AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382150 MtrunA17_Chr2g0285841 93.569 311 20 0 1 311 1 311 0.0 593
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382150 AT1G30130.3 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa1382150 AT1G30130.1 58.438 320 115 3 1 311 1 311 6.55e-136 388
Msa1382150 AT1G30130.2 58.438 320 115 3 1 311 1 311 6.55e-136 388

Find 92 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTTACCTCATGTCAAATT+TGG 0.161730 tig0020490:+82032 None:intergenic
TCCTTGTTGGTGTTTAATTT+TGG 0.182388 tig0020490:+85377 None:intergenic
GTCCATTGGTATCGGTAATT+TGG 0.233892 tig0020490:+85032 None:intergenic
TTAGGTGGATTGACGCTAAA+TGG 0.269497 tig0020490:-82328 Msa1382150:CDS
TGTAGGTTGACTTTGTATTC+TGG 0.272744 tig0020490:-82224 Msa1382150:three_prime_UTR
TATAATTTACATACCATAAA+AGG 0.293975 tig0020490:+83894 None:intergenic
TCCTGGTTGCTTCCTCTTTG+TGG 0.305566 tig0020490:+82389 None:intergenic
TCAGTTCATCACCCTGAGTT+TGG 0.330540 tig0020490:-83486 Msa1382150:CDS
TCCTCCAGGCTATAAAATTA+TGG 0.331657 tig0020490:-82514 Msa1382150:intron
GGTTACCATCATTACCAGTT+TGG 0.334757 tig0020490:+82248 None:intergenic
AGTACCTTCGTAGAGAGATA+TGG 0.376715 tig0020490:+85177 None:intergenic
GTTACCATCATTACCAGTTT+GGG 0.387512 tig0020490:+82249 None:intergenic
GTAATTTGGCGAGCTTCATC+TGG 0.388533 tig0020490:+85046 None:intergenic
GTCCTAGAGACAGGTGGTTT+AGG 0.396339 tig0020490:-82346 Msa1382150:CDS
AATAAGAGTGGTGAAGGAAA+TGG 0.409411 tig0020490:+85288 None:intergenic
TATAACGAACATTCCCAAAC+TGG 0.420353 tig0020490:-82262 Msa1382150:three_prime_UTR
AGGTTGCTGTATGGATATAC+TGG 0.426939 tig0020490:-83374 Msa1382150:CDS
GTAAAATAGTTTCCAAACTC+AGG 0.442321 tig0020490:+83474 None:intergenic
TATGGGTTCAGCTCCGTCAT+TGG 0.448545 tig0020490:+85195 None:intergenic
GCGCGTGAGGTGCACGGTCG+AGG 0.452719 tig0020490:+85086 None:intergenic
TGATGTCGAGCACAACTTGT+TGG 0.459330 tig0020490:+83437 None:intergenic
CGCCGCAGTAGCGCGTGAAA+AGG 0.462406 tig0020490:+85250 None:intergenic
AATATCAAAGCAAGTGATCC+TGG 0.464370 tig0020490:-83531 Msa1382150:CDS
TGTTCATATCCCACACTAGC+TGG 0.466991 tig0020490:+84850 None:intergenic
TTCATCTGGAGAAAGATGAT+TGG 0.468451 tig0020490:+85060 None:intergenic
GAACCGGGTGGCGGCGCTGA+TGG 0.470400 tig0020490:+85149 None:intergenic
TTGTAATAATAGTGTACATC+AGG 0.472463 tig0020490:-82110 Msa1382150:three_prime_UTR
TACGTGGGAATGGCATATCT+AGG 0.480461 tig0020490:+82464 None:intergenic
CTTCGTCAGCTAAATAATCC+TGG 0.483547 tig0020490:+82372 None:intergenic
AACTATGACAGGATATGCTT+GGG 0.484809 tig0020490:-83560 Msa1382150:intron
CATTCCCAAACTGGTAATGA+TGG 0.485448 tig0020490:-82253 Msa1382150:three_prime_UTR
TAGCAATAATACACACTCAA+TGG 0.488999 tig0020490:+84823 None:intergenic
AGGACTGACATGCAAAGCTT+TGG 0.490500 tig0020490:+83914 None:intergenic
TTCGTCCCTGTACGTGGGAA+TGG 0.491251 tig0020490:+82454 None:intergenic
ATCCATACAGCAACCTTATG+AGG 0.491264 tig0020490:+83381 None:intergenic
TATTGAAAGGAATGGTGAAC+CGG 0.494360 tig0020490:+85133 None:intergenic
AGAATGCGGATTGAAAATAA+AGG 0.498652 tig0020490:+83947 None:intergenic
TCATCTGGAGAAAGATGATT+GGG 0.500771 tig0020490:+85061 None:intergenic
CTACCATCAGCGCCGCCACC+CGG 0.504605 tig0020490:-85152 Msa1382150:CDS
GAACTATGACAGGATATGCT+TGG 0.507027 tig0020490:-83561 Msa1382150:intron
GATATGCCATTCCCACGTAC+AGG 0.511186 tig0020490:-82460 Msa1382150:CDS
GACAGGATATGCTTGGGAGT+TGG 0.511416 tig0020490:-83554 Msa1382150:intron
TTCAGCTCCGTCATTGGAAG+AGG 0.511539 tig0020490:+85201 None:intergenic
GTACCTTCGTAGAGAGATAT+GGG 0.518661 tig0020490:+85178 None:intergenic
TCGATCCACATTTCACTATG+TGG 0.518798 tig0020490:+82157 None:intergenic
AAACACTTACATGGGTCCAT+TGG 0.525548 tig0020490:+85018 None:intergenic
AGGAATGGTGAACCGGGTGG+CGG 0.528502 tig0020490:+85140 None:intergenic
GCTTCTTCCTCTTCCAATGA+CGG 0.530349 tig0020490:-85208 Msa1382150:CDS
GGATAGAATAAGAGTGGTGA+AGG 0.535689 tig0020490:+85282 None:intergenic
AAGGTTACTCTTTCAGCCCA+TGG 0.536237 tig0020490:+83966 None:intergenic
CTAGAGACAGGTGGTTTAGG+TGG 0.538191 tig0020490:-82343 Msa1382150:CDS
ATTGACAATTCCAGCTAGTG+TGG 0.542422 tig0020490:-84860 Msa1382150:CDS
ACGAAGCAAGTCCTAGAGAC+AGG 0.547793 tig0020490:-82355 Msa1382150:CDS
CACCTAAACCACCTGTCTCT+AGG 0.548815 tig0020490:+82344 None:intergenic
CGCGTGAAAAGGAAGGATAA+TGG 0.557879 tig0020490:+85261 None:intergenic
GATAGAAAACTGCAGTGTTG+TGG 0.563843 tig0020490:-82419 Msa1382150:CDS
TAAAGCTTCGTCCCTGTACG+TGG 0.567298 tig0020490:+82448 None:intergenic
GATAATGGATAGAATAAGAG+TGG 0.572586 tig0020490:+85276 None:intergenic
TGCCTCATAAGGTTGCTGTA+TGG 0.575098 tig0020490:-83383 Msa1382150:CDS
TAAAATAGTTTCCAAACTCA+GGG 0.579999 tig0020490:+83475 None:intergenic
ACGTGGGAATGGCATATCTA+GGG 0.589402 tig0020490:+82465 None:intergenic
AGAGGAAGAAGCGGCGCGTG+AGG 0.594894 tig0020490:+85219 None:intergenic
GAATACAAAGTCAACCTACA+TGG 0.596208 tig0020490:+82227 None:intergenic
GTAGCGAACATTGTATTGAA+AGG 0.600684 tig0020490:+85120 None:intergenic
TCCACAAAGAGGAAGCAACC+AGG 0.603581 tig0020490:-82390 Msa1382150:CDS
TTACATGGGTCCATTGGTAT+CGG 0.607772 tig0020490:+85024 None:intergenic
CGCCAAATTACCGATACCAA+TGG 0.613455 tig0020490:-85034 Msa1382150:CDS
GGATTGACGCTAAATGGCCA+TGG 0.618793 tig0020490:-82322 Msa1382150:CDS
GAACATTGTATTGAAAGGAA+TGG 0.618795 tig0020490:+85125 None:intergenic
TGGGTGGCGCGTGAGGTGCA+CGG 0.621460 tig0020490:+85080 None:intergenic
AGATGATTGGGTGGCGCGTG+AGG 0.621550 tig0020490:+85073 None:intergenic
GCAGTAGCGCGTGAAAAGGA+AGG 0.621678 tig0020490:+85254 None:intergenic
TATGTCCACATAGTGAAATG+TGG 0.624391 tig0020490:-82162 Msa1382150:three_prime_UTR
TCCAGGCTATAAAATTATGG+TGG 0.628267 tig0020490:-82511 Msa1382150:intron
GTCATTGGAAGAGGAAGAAG+CGG 0.628278 tig0020490:+85210 None:intergenic
GTTGTGCTCGACATCAGCAT+CGG 0.629113 tig0020490:-83430 Msa1382150:CDS
ATATGCCATTCCCACGTACA+GGG 0.629309 tig0020490:-82459 Msa1382150:CDS
GGTAATGATGGTAACCATGT+AGG 0.629430 tig0020490:-82241 Msa1382150:three_prime_UTR
AAGTCACCAAATTTGACATG+AGG 0.642319 tig0020490:-82038 Msa1382150:three_prime_UTR
TCAGGTAACAAATACACCAT+GGG 0.642717 tig0020490:-83982 Msa1382150:intron
TTTGAAGAAGTGCATTGCTG+AGG 0.643953 tig0020490:-84776 Msa1382150:intron
TTCAGGTAACAAATACACCA+TGG 0.647309 tig0020490:-83983 Msa1382150:intron
TTGACAATTCCAGCTAGTGT+GGG 0.653320 tig0020490:-84859 Msa1382150:CDS
TCTGGAGAAAGATGATTGGG+TGG 0.677082 tig0020490:+85064 None:intergenic
ATTGAAAGGAATGGTGAACC+GGG 0.679558 tig0020490:+85134 None:intergenic
ACCAAAATTAAACACCAACA+AGG 0.684374 tig0020490:-85378 Msa1382150:five_prime_UTR
TGTGGATTCAGTCCACAAAG+AGG 0.695546 tig0020490:-82401 Msa1382150:CDS
GAAAGGAATGGTGAACCGGG+TGG 0.699357 tig0020490:+85137 None:intergenic
AAAGCTTCGTCCCTGTACGT+GGG 0.700795 tig0020490:+82449 None:intergenic
TTGGCTACTAGATCAGAATG+CGG 0.714234 tig0020490:+83933 None:intergenic
AAGCAAGTCCTAGAGACAGG+TGG 0.718600 tig0020490:-82352 Msa1382150:CDS
GAACCCATATCTCTCTACGA+AGG 0.724309 tig0020490:-85181 Msa1382150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATTCCATTATTATTTT+TGG + tig0020490:82159-82178 None:intergenic 10.0%
!! AATACTTAATCATTTAAAAA+TGG + tig0020490:84153-84172 None:intergenic 10.0%
!!! ATTTTCACCAAAAATAATAA+TGG - tig0020490:82149-82168 Msa1382150:three_prime_UTR 15.0%
!! ATTATATGTGTAAATTGAAA+AGG + tig0020490:82778-82797 None:intergenic 15.0%
!!! GTATTTTGATAAAGAAATAT+AGG - tig0020490:82886-82905 Msa1382150:intron 15.0%
!! TATAATTTACATACCATAAA+AGG + tig0020490:83599-83618 None:intergenic 15.0%
!!! TTAATTTAAGTTAACTATGT+AGG + tig0020490:83842-83861 None:intergenic 15.0%
!!! TTAGTTATTTTGAAAATTGA+GGG + tig0020490:84406-84425 None:intergenic 15.0%
!! CATAAAAAACATTGTTTATA+TGG - tig0020490:84593-84612 Msa1382150:intron 15.0%
!!! TAAAAATGTTTTTTCCTTGT+TGG + tig0020490:82129-82148 None:intergenic 20.0%
!!! ATTCTTTACTTTTTCTCAAT+TGG - tig0020490:82501-82520 Msa1382150:CDS 20.0%
!!! TTCTTTACTTTTTCTCAATT+GGG - tig0020490:82502-82521 Msa1382150:CDS 20.0%
!! TTACGTTTCAATTTAAATGT+AGG - tig0020490:82554-82573 Msa1382150:intron 20.0%
!! TGAGAAGATTAATTAATTAG+TGG - tig0020490:82864-82883 Msa1382150:intron 20.0%
!! TTCTATCATAAACCATATTT+GGG - tig0020490:83194-83213 Msa1382150:intron 20.0%
!! CAAAAAATATTTACTTCTCA+TGG + tig0020490:84267-84286 None:intergenic 20.0%
!!! AAATATTTTTTGCTTGAGAT+TGG - tig0020490:84275-84294 Msa1382150:intron 20.0%
!!! AATATTTTTTGCTTGAGATT+GGG - tig0020490:84276-84295 Msa1382150:intron 20.0%
!!! TTTGACTTAAAATGCATTTT+TGG - tig0020490:84331-84350 Msa1382150:intron 20.0%
!!! TATTTTTAAATCCACGATTT+TGG - tig0020490:84379-84398 Msa1382150:intron 20.0%
!!! GTTAGTTATTTTGAAAATTG+AGG + tig0020490:84407-84426 None:intergenic 20.0%
!! TTTCAATTCAAATGCAAAAA+TGG + tig0020490:84824-84843 None:intergenic 20.0%
!! ACATAAAGTAATTCCTAAAA+AGG + tig0020490:84908-84927 None:intergenic 20.0%
!!! TGTGTAAATTCTAAATTTTG+AGG - tig0020490:85411-85430 Msa1382150:five_prime_UTR 20.0%
!! TTTTATATGGGTGTTAACAT+AGG - tig0020490:82038-82057 Msa1382150:three_prime_UTR 25.0%
! ATGAAGAAAAACACTTACAT+GGG + tig0020490:82483-82502 None:intergenic 25.0%
! AATGAAGAAAAACACTTACA+TGG + tig0020490:82484-82503 None:intergenic 25.0%
!! CGTAAAAATCAAATTTTGCA+TGG + tig0020490:82539-82558 None:intergenic 25.0%
! CATATGGAGAAAATTCAATT+GGG - tig0020490:83016-83035 Msa1382150:intron 25.0%
! TTGTTAGGTTATCATGTTAT+GGG + tig0020490:83107-83126 None:intergenic 25.0%
! GTTCTATCATAAACCATATT+TGG - tig0020490:83193-83212 Msa1382150:intron 25.0%
! AAACTATAAGAGAAACTGTT+AGG + tig0020490:83246-83265 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - tig0020490:83250-83269 Msa1382150:intron 25.0%
! AGAAGAATAAACTGACAAAA+TGG + tig0020490:83302-83321 None:intergenic 25.0%
! GTCAGTTTATTCTTCTTTAT+AGG - tig0020490:83306-83325 Msa1382150:intron 25.0%
!! ATTCAGATACTTGATAATTC+AGG - tig0020490:83396-83415 Msa1382150:CDS 25.0%
!!! CGATGTTTTTTTTTTGTTTC+AGG - tig0020490:83490-83509 Msa1382150:CDS 25.0%
!!! ATAGCTTTTCTGCATTTTTT+CGG - tig0020490:83885-83904 Msa1382150:intron 25.0%
! TAAAATAGTTTCCAAACTCA+GGG + tig0020490:84018-84037 None:intergenic 25.0%
!! TTGTTATGATGAATTTTCGT+TGG - tig0020490:84194-84213 Msa1382150:intron 25.0%
!! AGCAATTTAAAATCTCACTT+CGG - tig0020490:84219-84238 Msa1382150:intron 25.0%
! TCTGTGACATAATACTATTT+AGG - tig0020490:84500-84519 Msa1382150:intron 25.0%
!!! TATTTTTAGATCCCTGAATT+TGG + tig0020490:84741-84760 None:intergenic 25.0%
! AATTCAGGGATCTAAAAATA+TGG - tig0020490:84741-84760 Msa1382150:intron 25.0%
! ATTCAGGGATCTAAAAATAT+GGG - tig0020490:84742-84761 Msa1382150:intron 25.0%
!! TATTTTGTCTCATACGATTT+TGG + tig0020490:84769-84788 None:intergenic 25.0%
! AAAATAAAGGCAGTAAAGTT+GGG + tig0020490:84854-84873 None:intergenic 25.0%
! TAAAATAAAGGCAGTAAAGT+TGG + tig0020490:84855-84874 None:intergenic 25.0%
!!! CTTTACTGCCTTTATTTTAA+TGG - tig0020490:84856-84875 Msa1382150:CDS 25.0%
! CAACATGTCCATTAAAATAA+AGG + tig0020490:84867-84886 None:intergenic 25.0%
! TTGTAATAATAGTGTACATC+AGG - tig0020490:85380-85399 Msa1382150:five_prime_UTR 25.0%
ACCAAAATTAAACACCAACA+AGG - tig0020490:82112-82131 Msa1382150:three_prime_UTR 30.0%
!! TCCTTGTTGGTGTTTAATTT+TGG + tig0020490:82116-82135 None:intergenic 30.0%
!! GATAATGGATAGAATAAGAG+TGG + tig0020490:82217-82236 None:intergenic 30.0%
GAACATTGTATTGAAAGGAA+TGG + tig0020490:82368-82387 None:intergenic 30.0%
TAGCAATAATACACACTCAA+TGG + tig0020490:82670-82689 None:intergenic 30.0%
TTTGTCGCTAAACATAGTAA+GGG - tig0020490:82829-82848 Msa1382150:intron 30.0%
TAACAATGAATTTGTCTGAG+TGG - tig0020490:82931-82950 Msa1382150:intron 30.0%
GCATATGGAGAAAATTCAAT+TGG - tig0020490:83015-83034 Msa1382150:intron 30.0%
GTTGTTAGGTTATCATGTTA+TGG + tig0020490:83108-83127 None:intergenic 30.0%
!!! TGGTTGTTTTTGTTGTTGTT+AGG + tig0020490:83122-83141 None:intergenic 30.0%
ATGTAGCTATCTCATTTAGT+AGG + tig0020490:83153-83172 None:intergenic 30.0%
TACTAAATGAGATAGCTACA+TGG - tig0020490:83152-83171 Msa1382150:intron 30.0%
CTTCTTTATAGGATTTCTCT+TGG - tig0020490:83317-83336 Msa1382150:intron 30.0%
!! TGGTGTTTTTCACTTTTATG+TGG - tig0020490:83359-83378 Msa1382150:intron 30.0%
!! GGTGTTTTTCACTTTTATGT+GGG - tig0020490:83360-83379 Msa1382150:intron 30.0%
!! AAGTAGAGTATTGTGAAAAC+TGG - tig0020490:83464-83483 Msa1382150:CDS 30.0%
! AGAATGCGGATTGAAAATAA+AGG + tig0020490:83546-83565 None:intergenic 30.0%
! ACCATTTCTATGCAGATTTT+AGG - tig0020490:83618-83637 Msa1382150:intron 30.0%
TCCTAAAATCTGCATAGAAA+TGG + tig0020490:83622-83641 None:intergenic 30.0%
GAAGAGGAAAACACAATATA+TGG + tig0020490:83729-83748 None:intergenic 30.0%
! ATTGTGTTTTCCTCTTCTTT+TGG - tig0020490:83732-83751 Msa1382150:intron 30.0%
GCATAATATGATTCAAACTG+AGG - tig0020490:83760-83779 Msa1382150:intron 30.0%
CAATCAACACATACATATCA+TGG - tig0020490:83798-83817 Msa1382150:intron 30.0%
GTAAAATAGTTTCCAAACTC+AGG + tig0020490:84019-84038 None:intergenic 30.0%
! GCAATTTAAAATCTCACTTC+GGG - tig0020490:84220-84239 Msa1382150:intron 30.0%
! CAATTTAAAATCTCACTTCG+GGG - tig0020490:84221-84240 Msa1382150:intron 30.0%
CTTCTCATGGAAGAAAATAA+TGG + tig0020490:84254-84273 None:intergenic 30.0%
CAACAACAACAACAAAATAG+AGG + tig0020490:84359-84378 None:intergenic 30.0%
TAATTGTGTGAGAACTAAGA+TGG + tig0020490:84649-84668 None:intergenic 30.0%
!!! TGGGTTGATTTTTGATGATT+TGG + tig0020490:84681-84700 None:intergenic 30.0%
AAAATCAACCCAAATGCATA+TGG - tig0020490:84689-84708 Msa1382150:intron 30.0%
AAATCAACCCAAATGCATAT+GGG - tig0020490:84690-84709 Msa1382150:intron 30.0%
! CTTGATATTTTCTATGACCA+TGG + tig0020490:85188-85207 None:intergenic 30.0%
AATAAGAGTGGTGAAGGAAA+TGG + tig0020490:82205-82224 None:intergenic 35.0%
TATTGAAAGGAATGGTGAAC+CGG + tig0020490:82360-82379 None:intergenic 35.0%
GTAGCGAACATTGTATTGAA+AGG + tig0020490:82373-82392 None:intergenic 35.0%
TCATCTGGAGAAAGATGATT+GGG + tig0020490:82432-82451 None:intergenic 35.0%
TTCATCTGGAGAAAGATGAT+TGG + tig0020490:82433-82452 None:intergenic 35.0%
!!! CAAATTTTGCATGGTTCTGA+GGG + tig0020490:82530-82549 None:intergenic 35.0%
!! TCAAATTTTGCATGGTTCTG+AGG + tig0020490:82531-82550 None:intergenic 35.0%
CTTTGTCGCTAAACATAGTA+AGG - tig0020490:82828-82847 Msa1382150:intron 35.0%
TTCTCCATATGCAATAGTCA+GGG + tig0020490:83007-83026 None:intergenic 35.0%
TTTCTCCATATGCAATAGTC+AGG + tig0020490:83008-83027 None:intergenic 35.0%
ATGGAGAAAATTCAATTGGG+AGG - tig0020490:83019-83038 Msa1382150:intron 35.0%
TGGAGAAAATTCAATTGGGA+GGG - tig0020490:83020-83039 Msa1382150:intron 35.0%
AGCTATCTCATTTAGTAGGA+TGG + tig0020490:83149-83168 None:intergenic 35.0%
! CAATGAGTTGAACCCAAATA+TGG + tig0020490:83209-83228 None:intergenic 35.0%
GTTGAGTGAAAAACAGTTTG+TGG - tig0020490:83339-83358 Msa1382150:intron 35.0%
TTCAGGTAACAAATACACCA+TGG - tig0020490:83507-83526 Msa1382150:CDS 35.0%
TCAGGTAACAAATACACCAT+GGG - tig0020490:83508-83527 Msa1382150:CDS 35.0%
! TTTGCATGTCAGTCCTTTTA+TGG - tig0020490:83583-83602 Msa1382150:intron 35.0%
TATGCAATGACCAAAAGAAG+AGG + tig0020490:83745-83764 None:intergenic 35.0%
CAACACATACATATCATGGT+TGG - tig0020490:83802-83821 Msa1382150:intron 35.0%
AACTATGACAGGATATGCTT+GGG - tig0020490:83930-83949 Msa1382150:CDS 35.0%
AATATCAAAGCAAGTGATCC+TGG - tig0020490:83959-83978 Msa1382150:CDS 35.0%
! GATATGCTAAGATTTTCTCC+AGG + tig0020490:83980-83999 None:intergenic 35.0%
GAAATACCAGAACAACACTT+TGG - tig0020490:84298-84317 Msa1382150:intron 35.0%
AGCTTCAAAATGTGTAACTG+GGG + tig0020490:84435-84454 None:intergenic 35.0%
CAGCTTCAAAATGTGTAACT+GGG + tig0020490:84436-84455 None:intergenic 35.0%
TCAGCTTCAAAATGTGTAAC+TGG + tig0020490:84437-84456 None:intergenic 35.0%
AAAACCGAATGACCAAATTC+AGG - tig0020490:84726-84745 Msa1382150:intron 35.0%
AAACCGAATGACCAAATTCA+GGG - tig0020490:84727-84746 Msa1382150:intron 35.0%
! TTTAATGGACATGTTGCCTT+TGG - tig0020490:84871-84890 Msa1382150:intron 35.0%
!! AAAGGTTGATGTTGTTCCAA+AGG + tig0020490:84890-84909 None:intergenic 35.0%
! GGAACAACATCAACCTTTTT+AGG - tig0020490:84892-84911 Msa1382150:intron 35.0%
TCCTCCAGGCTATAAAATTA+TGG - tig0020490:84976-84995 Msa1382150:intron 35.0%
! ACCATAATTTTATAGCCTGG+AGG + tig0020490:84980-84999 None:intergenic 35.0%
TCCAGGCTATAAAATTATGG+TGG - tig0020490:84979-84998 Msa1382150:intron 35.0%
! TCCACCATAATTTTATAGCC+TGG + tig0020490:84983-85002 None:intergenic 35.0%
TATAACGAACATTCCCAAAC+TGG - tig0020490:85228-85247 Msa1382150:CDS 35.0%
GTTACCATCATTACCAGTTT+GGG + tig0020490:85244-85263 None:intergenic 35.0%
GAATACAAAGTCAACCTACA+TGG + tig0020490:85266-85285 None:intergenic 35.0%
! TGTAGGTTGACTTTGTATTC+TGG - tig0020490:85266-85285 Msa1382150:CDS 35.0%
TATGTCCACATAGTGAAATG+TGG - tig0020490:85328-85347 Msa1382150:exon 35.0%
GGATAGAATAAGAGTGGTGA+AGG + tig0020490:82211-82230 None:intergenic 40.0%
GTACCTTCGTAGAGAGATAT+GGG + tig0020490:82315-82334 None:intergenic 40.0%
AGTACCTTCGTAGAGAGATA+TGG + tig0020490:82316-82335 None:intergenic 40.0%
ATTGAAAGGAATGGTGAACC+GGG + tig0020490:82359-82378 None:intergenic 40.0%
!! GTCCATTGGTATCGGTAATT+TGG + tig0020490:82461-82480 None:intergenic 40.0%
TTACATGGGTCCATTGGTAT+CGG + tig0020490:82469-82488 None:intergenic 40.0%
AAACACTTACATGGGTCCAT+TGG + tig0020490:82475-82494 None:intergenic 40.0%
ATTGACAATTCCAGCTAGTG+TGG - tig0020490:82630-82649 Msa1382150:intron 40.0%
TTGACAATTCCAGCTAGTGT+GGG - tig0020490:82631-82650 Msa1382150:intron 40.0%
! TTTGAAGAAGTGCATTGCTG+AGG - tig0020490:82714-82733 Msa1382150:intron 40.0%
ATGAATTTGTCTGAGTGGTG+AGG - tig0020490:82936-82955 Msa1382150:intron 40.0%
TGAATTTGTCTGAGTGGTGA+GGG - tig0020490:82937-82956 Msa1382150:intron 40.0%
TGATCCCTGACTATTGCATA+TGG - tig0020490:83000-83019 Msa1382150:intron 40.0%
GGAGAAAATTCAATTGGGAG+GGG - tig0020490:83021-83040 Msa1382150:intron 40.0%
GAGAAAATTCAATTGGGAGG+GGG - tig0020490:83022-83041 Msa1382150:intron 40.0%
AGAAAATTCAATTGGGAGGG+GGG - tig0020490:83023-83042 Msa1382150:intron 40.0%
TCATTTAGTAGGATGGAGCT+TGG + tig0020490:83142-83161 None:intergenic 40.0%
GAGTCGAACATGGTTTATGA+TGG + tig0020490:83280-83299 None:intergenic 40.0%
TGACAAAATGGAGTCGAACA+TGG + tig0020490:83290-83309 None:intergenic 40.0%
TTGGCTACTAGATCAGAATG+CGG + tig0020490:83560-83579 None:intergenic 40.0%
AGCATATCCTGTCATAGTTC+AGG + tig0020490:83929-83948 None:intergenic 40.0%
GAACTATGACAGGATATGCT+TGG - tig0020490:83929-83948 Msa1382150:CDS 40.0%
!! CTTTTGGTTGATGCCTCATA+AGG - tig0020490:84096-84115 Msa1382150:intron 40.0%
ATCCATACAGCAACCTTATG+AGG + tig0020490:84112-84131 None:intergenic 40.0%
AGGTTGCTGTATGGATATAC+TGG - tig0020490:84116-84135 Msa1382150:intron 40.0%
!! TACACACCAAAGTGTTGTTC+TGG + tig0020490:84307-84326 None:intergenic 40.0%
AAATTGAGGGACCAAAATCG+TGG + tig0020490:84393-84412 None:intergenic 40.0%
GCTTCAAAATGTGTAACTGG+GGG + tig0020490:84434-84453 None:intergenic 40.0%
GATCCCTGAATTTGGTCATT+CGG + tig0020490:84733-84752 None:intergenic 40.0%
GATAGAAAACTGCAGTGTTG+TGG - tig0020490:85071-85090 Msa1382150:CDS 40.0%
CTTCGTCAGCTAAATAATCC+TGG + tig0020490:85121-85140 None:intergenic 40.0%
!! TTAGGTGGATTGACGCTAAA+TGG - tig0020490:85162-85181 Msa1382150:CDS 40.0%
! CATTCCCAAACTGGTAATGA+TGG - tig0020490:85237-85256 Msa1382150:CDS 40.0%
GGTTACCATCATTACCAGTT+TGG + tig0020490:85245-85264 None:intergenic 40.0%
GGTAATGATGGTAACCATGT+AGG - tig0020490:85249-85268 Msa1382150:CDS 40.0%
TCGATCCACATTTCACTATG+TGG + tig0020490:85336-85355 None:intergenic 40.0%
CGCGTGAAAAGGAAGGATAA+TGG + tig0020490:82232-82251 None:intergenic 45.0%
GTCATTGGAAGAGGAAGAAG+CGG + tig0020490:82283-82302 None:intergenic 45.0%
GCTTCTTCCTCTTCCAATGA+CGG - tig0020490:82282-82301 Msa1382150:three_prime_UTR 45.0%
GAACCCATATCTCTCTACGA+AGG - tig0020490:82309-82328 Msa1382150:exon 45.0%
TCTGGAGAAAGATGATTGGG+TGG + tig0020490:82429-82448 None:intergenic 45.0%
GTAATTTGGCGAGCTTCATC+TGG + tig0020490:82447-82466 None:intergenic 45.0%
CGCCAAATTACCGATACCAA+TGG - tig0020490:82456-82475 Msa1382150:CDS 45.0%
TGTTCATATCCCACACTAGC+TGG + tig0020490:82643-82662 None:intergenic 45.0%
AGTTGAGCCACTTAAGCAAG+TGG - tig0020490:82968-82987 Msa1382150:intron 45.0%
GAAAATTCAATTGGGAGGGG+GGG - tig0020490:83024-83043 Msa1382150:intron 45.0%
CAAAGTTTCGCACACATGGT+GGG + tig0020490:83082-83101 None:intergenic 45.0%
ACAAAGTTTCGCACACATGG+TGG + tig0020490:83083-83102 None:intergenic 45.0%
AAGGTTACTCTTTCAGCCCA+TGG + tig0020490:83527-83546 None:intergenic 45.0%
AGGACTGACATGCAAAGCTT+TGG + tig0020490:83579-83598 None:intergenic 45.0%
GTTACTTCCTCAGTTTCGCT+CGG - tig0020490:83702-83721 Msa1382150:intron 45.0%
! CCTGTCATAGTTCAGGTTCA+GGG + tig0020490:83922-83941 None:intergenic 45.0%
! TCCTGTCATAGTTCAGGTTC+AGG + tig0020490:83923-83942 None:intergenic 45.0%
TCAGTTCATCACCCTGAGTT+TGG - tig0020490:84004-84023 Msa1382150:intron 45.0%
TGATGTCGAGCACAACTTGT+TGG + tig0020490:84056-84075 None:intergenic 45.0%
! CGGATCACGCAGTTTTCTTT+TGG - tig0020490:84080-84099 Msa1382150:intron 45.0%
TGCCTCATAAGGTTGCTGTA+TGG - tig0020490:84107-84126 Msa1382150:intron 45.0%
GTCTGCTCCCATATGCATTT+GGG + tig0020490:84700-84719 None:intergenic 45.0%
TGTCTGCTCCCATATGCATT+TGG + tig0020490:84701-84720 None:intergenic 45.0%
GGAGGACGAATGGACATAAT+GGG + tig0020490:84962-84981 None:intergenic 45.0%
TGGAGGACGAATGGACATAA+TGG + tig0020490:84963-84982 None:intergenic 45.0%
ATTATGTCCATTCGTCCTCC+AGG - tig0020490:84962-84981 Msa1382150:intron 45.0%
TTTATAGCCTGGAGGACGAA+TGG + tig0020490:84972-84991 None:intergenic 45.0%
ACGTGGGAATGGCATATCTA+GGG + tig0020490:85028-85047 None:intergenic 45.0%
TACGTGGGAATGGCATATCT+AGG + tig0020490:85029-85048 None:intergenic 45.0%
ATATGCCATTCCCACGTACA+GGG - tig0020490:85031-85050 Msa1382150:CDS 45.0%
TGTGGATTCAGTCCACAAAG+AGG - tig0020490:85089-85108 Msa1382150:CDS 45.0%
! TTCCTTTTCACGCGCTACTG+CGG - tig0020490:82238-82257 Msa1382150:three_prime_UTR 50.0%
TTCAGCTCCGTCATTGGAAG+AGG + tig0020490:82292-82311 None:intergenic 50.0%
TATGGGTTCAGCTCCGTCAT+TGG + tig0020490:82298-82317 None:intergenic 50.0%
AGCCACTTAAGCAAGTGGTC+AGG - tig0020490:82973-82992 Msa1382150:intron 50.0%
GCCACTTAAGCAAGTGGTCA+GGG - tig0020490:82974-82993 Msa1382150:intron 50.0%
CCACTTAAGCAAGTGGTCAG+GGG - tig0020490:82975-82994 Msa1382150:intron 50.0%
GGCACAAAGTTTCGCACACA+TGG + tig0020490:83086-83105 None:intergenic 50.0%
ATATGGACCGAGCGAAACTG+AGG + tig0020490:83712-83731 None:intergenic 50.0%
CCCTGAACCTGAACTATGAC+AGG - tig0020490:83919-83938 Msa1382150:CDS 50.0%
GACAGGATATGCTTGGGAGT+TGG - tig0020490:83936-83955 Msa1382150:CDS 50.0%
GTTGTGCTCGACATCAGCAT+CGG - tig0020490:84060-84079 Msa1382150:intron 50.0%
GATATGCCATTCCCACGTAC+AGG - tig0020490:85030-85049 Msa1382150:CDS 50.0%
AAAGCTTCGTCCCTGTACGT+GGG + tig0020490:85044-85063 None:intergenic 50.0%
TAAAGCTTCGTCCCTGTACG+TGG + tig0020490:85045-85064 None:intergenic 50.0%
TCCACAAAGAGGAAGCAACC+AGG - tig0020490:85100-85119 Msa1382150:CDS 50.0%
TCCTGGTTGCTTCCTCTTTG+TGG + tig0020490:85104-85123 None:intergenic 50.0%
ACGAAGCAAGTCCTAGAGAC+AGG - tig0020490:85135-85154 Msa1382150:CDS 50.0%
AAGCAAGTCCTAGAGACAGG+TGG - tig0020490:85138-85157 Msa1382150:CDS 50.0%
GTCCTAGAGACAGGTGGTTT+AGG - tig0020490:85144-85163 Msa1382150:CDS 50.0%
CACCTAAACCACCTGTCTCT+AGG + tig0020490:85149-85168 None:intergenic 50.0%
CTAGAGACAGGTGGTTTAGG+TGG - tig0020490:85147-85166 Msa1382150:CDS 50.0%
GGATTGACGCTAAATGGCCA+TGG - tig0020490:85168-85187 Msa1382150:CDS 50.0%
GCAGTAGCGCGTGAAAAGGA+AGG + tig0020490:82239-82258 None:intergenic 55.0%
GAAAGGAATGGTGAACCGGG+TGG + tig0020490:82356-82375 None:intergenic 55.0%
CCCCTGACCACTTGCTTAAG+TGG + tig0020490:82978-82997 None:intergenic 55.0%
GAGAACCCACCTTGTGTGGT+TGG - tig0020490:83046-83065 Msa1382150:intron 55.0%
ACCCACCTTGTGTGGTTGGA+AGG - tig0020490:83050-83069 Msa1382150:intron 55.0%
CCCTTCCAACCACACAAGGT+GGG + tig0020490:83054-83073 None:intergenic 55.0%
CCCACCTTGTGTGGTTGGAA+GGG - tig0020490:83051-83070 Msa1382150:intron 55.0%
CCACCTTGTGTGGTTGGAAG+GGG - tig0020490:83052-83071 Msa1382150:intron 55.0%
TCTCCCCTTCCAACCACACA+AGG + tig0020490:83058-83077 None:intergenic 55.0%
TTCGTCCCTGTACGTGGGAA+TGG + tig0020490:85039-85058 None:intergenic 55.0%
AGGAATGGTGAACCGGGTGG+CGG + tig0020490:82353-82372 None:intergenic 60.0%
AGATGATTGGGTGGCGCGTG+AGG + tig0020490:82420-82439 None:intergenic 60.0%
CCCCTTCCAACCACACAAGG+TGG + tig0020490:83055-83074 None:intergenic 60.0%
CGCCGCAGTAGCGCGTGAAA+AGG + tig0020490:82243-82262 None:intergenic 65.0%
AGAGGAAGAAGCGGCGCGTG+AGG + tig0020490:82274-82293 None:intergenic 65.0%
GGGGGAGAACCCACCTTGTG+TGG - tig0020490:83042-83061 Msa1382150:intron 65.0%
CTACCATCAGCGCCGCCACC+CGG - tig0020490:82338-82357 Msa1382150:CDS 70.0%
TGGGTGGCGCGTGAGGTGCA+CGG + tig0020490:82413-82432 None:intergenic 70.0%
! GAACCGGGTGGCGGCGCTGA+TGG + tig0020490:82344-82363 None:intergenic 75.0%
GCGCGTGAGGTGCACGGTCG+AGG + tig0020490:82407-82426 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0020490 gene 82038 85474 82038 ID=Msa1382150;Name=Msa1382150
tig0020490 mRNA 82038 85474 82038 ID=Msa1382150-mRNA-1;Parent=Msa1382150;Name=Msa1382150-mRNA-1;_AED=0.07;_eAED=0.07;_QI=130|1|1|1|1|1|5|278|311
tig0020490 exon 82038 82528 82038 ID=Msa1382150-mRNA-1:exon:7956;Parent=Msa1382150-mRNA-1
tig0020490 exon 83371 83571 83371 ID=Msa1382150-mRNA-1:exon:7955;Parent=Msa1382150-mRNA-1
tig0020490 exon 83908 84000 83908 ID=Msa1382150-mRNA-1:exon:7954;Parent=Msa1382150-mRNA-1
tig0020490 exon 84777 84888 84777 ID=Msa1382150-mRNA-1:exon:7953;Parent=Msa1382150-mRNA-1
tig0020490 exon 85028 85474 85028 ID=Msa1382150-mRNA-1:exon:7952;Parent=Msa1382150-mRNA-1
tig0020490 five_prime_UTR 85345 85474 85345 ID=Msa1382150-mRNA-1:five_prime_utr;Parent=Msa1382150-mRNA-1
tig0020490 CDS 85028 85344 85028 ID=Msa1382150-mRNA-1:cds;Parent=Msa1382150-mRNA-1
tig0020490 CDS 84777 84888 84777 ID=Msa1382150-mRNA-1:cds;Parent=Msa1382150-mRNA-1
tig0020490 CDS 83908 84000 83908 ID=Msa1382150-mRNA-1:cds;Parent=Msa1382150-mRNA-1
tig0020490 CDS 83371 83571 83371 ID=Msa1382150-mRNA-1:cds;Parent=Msa1382150-mRNA-1
tig0020490 CDS 82316 82528 82316 ID=Msa1382150-mRNA-1:cds;Parent=Msa1382150-mRNA-1
tig0020490 three_prime_UTR 82038 82315 82038 ID=Msa1382150-mRNA-1:three_prime_utr;Parent=Msa1382150-mRNA-1
Gene Sequence

>Msa1382150

ATGGAATTAATTTATCTTCTATGCTCTATAGTCTCCATTTCCTTCACCACTCTTATTCTATCCATTATCCTTCCTTTTCACGCGCTACTGCGGCGTTTAGTAACCTCACGCGCCGCTTCTTCCTCTTCCAATGACGGAGCTGAACCCATATCTCTCTACGAAGGTACTGTCTACCATCAGCGCCGCCACCCGGTTCACCATTCCTTTCAATACAATGTTCGCTACGCACTTATTGACCTCGACCGTGCACCTCACGCGCCACCCAATCATCTTTCTCCAGATGAAGCTCGCCAAATTACCGATACCAATGGACCCATTTTGCTATTGACAATTCCAGCTAGTGTGGGATATGAACAGAATCCATTGAGTGTGTATTATTGCTATGATGTTGAAGACTCTGATACACGTTTGAAGAAGTGCATTGCTGAGGTAACAAATACACCATGGGCTGAAAGAGTAACCTTTATTTTCAATCCGCATTCTGATCTAGTAGCCAAAGCTTTGCATGTCAGTCCTTTTATGGATATGCTTGGGAGTTGGAATATCAAAGCAAGTGATCCTGGAGAAAATCTTAGCATATCAATTTCAGTTCATCACCCTGAGTTTGGAAACTATTTTACTGCTAGTCTGAGAGCCAACAAGTTGTGCTCGACATCAGCATCGGATCACGCAGTTTTCTTTTGGTTGATGCCTCATAAGGTTGCTGTATGGATATACTGGCATGCTATAAAATTATGGTGGAAGAATGTGAAATTTATACAACACCCTAGATATGCCATTCCCACGTACAGGGACGAAGCTTTAATACGAGATAGAAAACTGCAGTGTTGTGGATTCAGTCCACAAAGAGGAAGCAACCAGGATTATTTAGCTGACGAAGCAAGTCCTAGAGACAGGTGGTTTAGGTGGATTGACGCTAAATGGCCATGGTCATAG

Protein sequence

>Msa1382150

MELIYLLCSIVSISFTTLILSIILPFHALLRRLVTSRAASSSSNDGAEPISLYEGTVYHQRRHPVHHSFQYNVRYALIDLDRAPHAPPNHLSPDEARQITDTNGPILLLTIPASVGYEQNPLSVYYCYDVEDSDTRLKKCIAEVTNTPWAERVTFIFNPHSDLVAKALHVSPFMDMLGSWNIKASDPGENLSISISVHHPEFGNYFTASLRANKLCSTSASDHAVFFWLMPHKVAVWIYWHAIKLWWKNVKFIQHPRYAIPTYRDEALIRDRKLQCCGFSPQRGSNQDYLADEASPRDRWFRWIDAKWPWS*