Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435150 | RHN71147.1 | 92.857 | 42 | 3 | 0 | 1 | 42 | 227 | 268 | 9.64e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435150 | sp|P30181|TOP1A_ARATH | 90.476 | 42 | 4 | 0 | 1 | 42 | 850 | 891 | 4.78e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435150 | A0A396J7B6 | 92.857 | 42 | 3 | 0 | 1 | 42 | 227 | 268 | 4.60e-20 | 89.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031180 | Msa0435150 | 0.800010 | 1.761509e-48 | -8.615850e-47 |
| Msa0042550 | Msa0435150 | 0.823426 | 1.394264e-53 | -8.615850e-47 |
| Msa0054820 | Msa0435150 | 0.803605 | 3.218212e-49 | -8.615850e-47 |
| Msa0055740 | Msa0435150 | 0.815241 | 1.022722e-51 | -8.615850e-47 |
| Msa0058600 | Msa0435150 | 0.816143 | 6.437997e-52 | -8.615850e-47 |
| Msa0064110 | Msa0435150 | 0.818916 | 1.527036e-52 | -8.615850e-47 |
| Msa0100160 | Msa0435150 | 0.807385 | 5.186787e-50 | -8.615850e-47 |
| Msa0138020 | Msa0435150 | 0.816404 | 5.628998e-52 | -8.615850e-47 |
| Msa0178510 | Msa0435150 | 0.822910 | 1.839435e-53 | -8.615850e-47 |
| Msa0194440 | Msa0435150 | 0.812959 | 3.260689e-51 | -8.615850e-47 |
| Msa0204840 | Msa0435150 | 0.824206 | 9.150714e-54 | -8.615850e-47 |
| Msa0218350 | Msa0435150 | 0.804874 | 1.751715e-49 | -8.615850e-47 |
| Msa0223120 | Msa0435150 | 0.810293 | 1.238483e-50 | -8.615850e-47 |
| Msa0417330 | Msa0435150 | 0.813086 | 3.057795e-51 | -8.615850e-47 |
| Msa0428050 | Msa0435150 | 0.801318 | 9.529681e-49 | -8.615850e-47 |
| Msa0434180 | Msa0435150 | 0.802541 | 5.342353e-49 | -8.615850e-47 |
| Msa0435150 | Msa0455760 | 0.817617 | 3.005329e-52 | -8.615850e-47 |
| Msa0435150 | Msa0468320 | 0.810975 | 8.823841e-51 | -8.615850e-47 |
| Msa0435150 | Msa0474390 | 0.805112 | 1.561958e-49 | -8.615850e-47 |
| Msa0435150 | Msa0484780 | 0.807765 | 4.307180e-50 | -8.615850e-47 |
| Msa0435150 | Msa0485490 | 0.811529 | 6.689449e-51 | -8.615850e-47 |
| Msa0435150 | Msa0518440 | 0.829969 | 3.822717e-55 | -8.615850e-47 |
| Msa0435150 | Msa0532960 | 0.800427 | 1.448545e-48 | -8.615850e-47 |
| Msa0435150 | Msa0598160 | 0.814209 | 1.731188e-51 | -8.615850e-47 |
| Msa0435150 | Msa0652940 | 0.800512 | 1.391779e-48 | -8.615850e-47 |
| Msa0435150 | Msa0689250 | 0.806487 | 8.033102e-50 | -8.615850e-47 |
| Msa0435150 | Msa0704920 | 0.809008 | 2.339656e-50 | -8.615850e-47 |
| Msa0435150 | Msa0715410 | 0.810936 | 8.995451e-51 | -8.615850e-47 |
| Msa0435150 | Msa0741070 | 0.832857 | 7.441723e-56 | -8.615850e-47 |
| Msa0435150 | Msa0773310 | 0.802198 | 6.285184e-49 | -8.615850e-47 |
| Msa0435150 | Msa0797770 | 0.812242 | 4.678389e-51 | -8.615850e-47 |
| Msa0435150 | Msa0821190 | 0.810644 | 1.040243e-50 | -8.615850e-47 |
| Msa0435150 | Msa0830230 | 0.801757 | 7.744161e-49 | -8.615850e-47 |
| Msa0435150 | Msa0831850 | 0.818266 | 2.144407e-52 | -8.615850e-47 |
| Msa0435150 | Msa0832090 | 0.813635 | 2.316760e-51 | -8.615850e-47 |
| Msa0435150 | Msa0835230 | 0.805842 | 1.098238e-49 | -8.615850e-47 |
| Msa0435150 | Msa1004840 | 0.807776 | 4.285328e-50 | -8.615850e-47 |
| Msa0435150 | Msa1026940 | 0.805601 | 1.233760e-49 | -8.615850e-47 |
| Msa0435150 | Msa1076960 | 0.803372 | 3.597308e-49 | -8.615850e-47 |
| Msa0435150 | Msa1080960 | 0.809490 | 1.843748e-50 | -8.615850e-47 |
| Msa0435150 | Msa1104560 | 0.835118 | 2.020814e-56 | -8.615850e-47 |
| Msa0435150 | Msa1119090 | 0.805738 | 1.154518e-49 | -8.615850e-47 |
| Msa0435150 | Msa1204630 | 0.807152 | 5.811512e-50 | -8.615850e-47 |
| Msa0435150 | Msa1205370 | 0.808972 | 2.381134e-50 | -8.615850e-47 |
| Msa0435150 | Msa1235390 | 0.808365 | 3.210520e-50 | -8.615850e-47 |
| Msa0435150 | Msa1243870 | 0.803060 | 4.173840e-49 | -8.615850e-47 |
| Msa0435150 | Msa1250290 | 0.821342 | 4.247945e-53 | -8.615850e-47 |
| Msa0435150 | Msa1368430 | 0.804272 | 2.339222e-49 | -8.615850e-47 |
| Msa0435150 | Msa1372150 | 0.830017 | 3.720859e-55 | -8.615850e-47 |
| Msa0435150 | Msa1382790 | 0.807150 | 5.818657e-50 | -8.615850e-47 |
| Msa0435150 | Msa1389880 | 0.804184 | 2.440322e-49 | -8.615850e-47 |
| Msa0241140 | Msa0435150 | 0.801058 | 1.077030e-48 | -8.615850e-47 |
| Msa0255850 | Msa0435150 | 0.800822 | 1.203263e-48 | -8.615850e-47 |
| Msa0271550 | Msa0435150 | 0.802091 | 6.613015e-49 | -8.615850e-47 |
| Msa0307310 | Msa0435150 | 0.827568 | 1.456334e-54 | -8.615850e-47 |
| Msa0339740 | Msa0435150 | 0.801605 | 8.323292e-49 | -8.615850e-47 |
| Msa0342010 | Msa0435150 | 0.810297 | 1.236441e-50 | -8.615850e-47 |
| Msa0358890 | Msa0435150 | 0.821010 | 5.068244e-53 | -8.615850e-47 |
| Msa0363790 | Msa0435150 | 0.803215 | 3.877427e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435150 | MtrunA17_Chr3g0143091 | 92.857 | 42 | 3 | 0 | 1 | 42 | 227 | 268 | 8.86e-24 | 89.4 |
| Msa0435150 | MtrunA17_Chr3g0143201 | 95.238 | 42 | 2 | 0 | 1 | 42 | 243 | 284 | 5.26e-23 | 88.2 |
| Msa0435150 | MtrunA17_Chr4g0021051 | 90.476 | 42 | 4 | 0 | 1 | 42 | 849 | 890 | 1.39e-21 | 85.5 |
| Msa0435150 | MtrunA17_Chr1g0165771 | 90.476 | 42 | 4 | 0 | 1 | 42 | 836 | 877 | 1.55e-21 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0435150 | AT5G55300.3 | 90.476 | 42 | 4 | 0 | 1 | 42 | 498 | 539 | 1.75e-22 | 88.6 |
| Msa0435150 | AT4G26701.1 | 83.333 | 42 | 7 | 0 | 1 | 42 | 6 | 47 | 1.96e-22 | 81.3 |
| Msa0435150 | AT5G55300.2 | 90.476 | 42 | 4 | 0 | 1 | 42 | 850 | 891 | 4.72e-22 | 87.4 |
| Msa0435150 | AT5G55300.1 | 90.476 | 42 | 4 | 0 | 1 | 42 | 850 | 891 | 4.86e-22 | 87.0 |
| Msa0435150 | AT5G55310.1 | 80.952 | 42 | 8 | 0 | 1 | 42 | 848 | 889 | 5.70e-20 | 81.3 |
Find 33 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGACAAAATTGAGAATT+TGG | 0.106634 | 3_2:-88191453 | None:intergenic |
| TTGGGATTTGTGTTGATTTC+GGG | 0.201106 | 3_2:-88191434 | None:intergenic |
| TGCGATTTGGGAACTGAATA+AGG | 0.228656 | 3_2:-88191602 | None:intergenic |
| TTTGGGATTTGTGTTGATTT+CGG | 0.273934 | 3_2:-88191435 | None:intergenic |
| TTGGGAACTGAATAAGGATT+TGG | 0.278346 | 3_2:-88191596 | None:intergenic |
| TGATTAGGGTTCATGCGATT+TGG | 0.285584 | 3_2:-88191615 | None:intergenic |
| TCGTTCTTCGGCAAGCTTTA+CGG | 0.287583 | 3_2:+88191811 | Msa0435150:five_prime_UTR |
| CAAGACAAAATTGAGAATTT+GGG | 0.320456 | 3_2:-88191452 | None:intergenic |
| CACGCCAGAACATCCATTCT+TGG | 0.321163 | 3_2:-88194882 | None:intergenic |
| ACCAGTTTATCGAGTGATTA+GGG | 0.342340 | 3_2:-88191629 | None:intergenic |
| ACGATTGTCGATTGGTGATT+TGG | 0.343263 | 3_2:-88191558 | None:intergenic |
| TGGGAACTGAATAAGGATTT+GGG | 0.344637 | 3_2:-88191595 | None:intergenic |
| GATTAGGGTTCATGCGATTT+GGG | 0.346416 | 3_2:-88191614 | None:intergenic |
| TACCAGTTTATCGAGTGATT+AGG | 0.347748 | 3_2:-88191630 | None:intergenic |
| ACCCTAATCACTCGATAAAC+TGG | 0.383554 | 3_2:+88191628 | Msa0435150:five_prime_UTR |
| GGGATCTAGGTAGTTTATCT+TGG | 0.388665 | 3_2:-88192646 | None:intergenic |
| GACGCCAAGAATGGATGTTC+TGG | 0.402100 | 3_2:+88194878 | Msa0435150:CDS |
| GCACCAGGCAACTGATATCC+TGG | 0.414673 | 3_2:-88192667 | None:intergenic |
| CAACTGATATCCTGGGATCT+AGG | 0.463630 | 3_2:-88192659 | None:intergenic |
| TTGGCGTCAGTGGCGGATCC+AGG | 0.465306 | 3_2:-88194863 | None:intergenic |
| AACCTCATGCCGCTTGCACC+AGG | 0.474250 | 3_2:-88192682 | None:intergenic |
| GGTTGCGATTCAGAGAGTTA+TGG | 0.477584 | 3_2:-88191537 | None:intergenic |
| TCCGCCACTGACGCCAAGAA+TGG | 0.497363 | 3_2:+88194869 | Msa0435150:CDS |
| ATCCCAGGATATCAGTTGCC+TGG | 0.512138 | 3_2:+88192664 | Msa0435150:CDS |
| TAACCTACAGGGTAGAGAAA+AGG | 0.512332 | 3_2:+88192539 | Msa0435150:intron |
| GCATGAGGTTCCTATTGAAA+AGG | 0.523214 | 3_2:+88192695 | Msa0435150:CDS |
| CACCAGGCAACTGATATCCT+GGG | 0.546235 | 3_2:-88192666 | None:intergenic |
| TGCCTGGTGCAAGCGGCATG+AGG | 0.552842 | 3_2:+88192680 | Msa0435150:CDS |
| TCCATTCTTGGCGTCAGTGG+CGG | 0.553110 | 3_2:-88194870 | None:intergenic |
| ACAGAATGACGATTGTCGAT+TGG | 0.578171 | 3_2:-88191566 | None:intergenic |
| AGATAAACTACCTAGATCCC+AGG | 0.592465 | 3_2:+88192649 | Msa0435150:CDS |
| TATCAGTTGCCTGGTGCAAG+CGG | 0.597542 | 3_2:+88192673 | Msa0435150:CDS |
| ACATCCATTCTTGGCGTCAG+TGG | 0.600642 | 3_2:-88194873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAACAAAAAATTATA+TGG | - | chr3_2:88193098-88193117 | None:intergenic | 10.0% |
| !!! | AAATATGTTTTTATTTAGAA+GGG | - | chr3_2:88193158-88193177 | None:intergenic | 10.0% |
| !!! | TAAATATGTTTTTATTTAGA+AGG | - | chr3_2:88193159-88193178 | None:intergenic | 10.0% |
| !!! | ATTTTATAAAGATAATTAGA+TGG | - | chr3_2:88193184-88193203 | None:intergenic | 10.0% |
| !! | ATCTAATTATCTTTATAAAA+TGG | + | chr3_2:88193183-88193202 | Msa0435150:intron | 10.0% |
| !!! | AATTTTTTGTTTTGTTTTGA+TGG | + | chr3_2:88193101-88193120 | Msa0435150:intron | 15.0% |
| !!! | ATTTTTTGTTTTGTTTTGAT+GGG | + | chr3_2:88193102-88193121 | Msa0435150:intron | 15.0% |
| !!! | TGAATGTTTGATTTTAATTT+TGG | + | chr3_2:88193211-88193230 | Msa0435150:intron | 15.0% |
| !! | TACATTATGTATAAATCTTA+AGG | + | chr3_2:88193943-88193962 | Msa0435150:intron | 15.0% |
| !!! | ATATATTAAATTTGACTTTG+GGG | - | chr3_2:88194142-88194161 | None:intergenic | 15.0% |
| !!! | CATATATTAAATTTGACTTT+GGG | - | chr3_2:88194143-88194162 | None:intergenic | 15.0% |
| !!! | TCATATATTAAATTTGACTT+TGG | - | chr3_2:88194144-88194163 | None:intergenic | 15.0% |
| !!! | AATTTTATAATATGGTTATG+TGG | + | chr3_2:88194411-88194430 | Msa0435150:intron | 15.0% |
| !!! | AAAAAAAAGTATTCGAAAAA+AGG | - | chr3_2:88194497-88194516 | None:intergenic | 15.0% |
| !!! | TTTTAGAGGTAAAAATTAAA+GGG | - | chr3_2:88194607-88194626 | None:intergenic | 15.0% |
| !!! | ATTTTAGAGGTAAAAATTAA+AGG | - | chr3_2:88194608-88194627 | None:intergenic | 15.0% |
| !! | ATCAACGTTAACAAAATATT+AGG | - | chr3_2:88191946-88191965 | None:intergenic | 20.0% |
| !!! | TAATTTTTTAGAAATGTGGA+GGG | - | chr3_2:88192923-88192942 | None:intergenic | 20.0% |
| !!! | TGTGTAATTTTTTAGAAATG+TGG | - | chr3_2:88192927-88192946 | None:intergenic | 20.0% |
| !! | GAAACAAAAACAATATTTCA+AGG | - | chr3_2:88193067-88193086 | None:intergenic | 20.0% |
| !!! | TGACATACTTATTTTTCTTT+GGG | + | chr3_2:88193249-88193268 | Msa0435150:intron | 20.0% |
| !!! | AAACTTATTTTTCATGTAGA+AGG | - | chr3_2:88193426-88193445 | None:intergenic | 20.0% |
| !!! | GTATAAAATTTAAGATCTCA+GGG | - | chr3_2:88193753-88193772 | None:intergenic | 20.0% |
| !! | AAACACATAACTTTCAATTT+GGG | - | chr3_2:88194051-88194070 | None:intergenic | 20.0% |
| !! | AAATTTGTAATATGATCATG+TGG | - | chr3_2:88194186-88194205 | None:intergenic | 20.0% |
| !!! | CAACGATGAATTTTATAATA+TGG | + | chr3_2:88194403-88194422 | Msa0435150:intron | 20.0% |
| !! | AATTAAAAATCACGTTGAAA+AGG | - | chr3_2:88194572-88194591 | None:intergenic | 20.0% |
| !! | TTTAGAGGTAAAAATTAAAG+GGG | - | chr3_2:88194606-88194625 | None:intergenic | 20.0% |
| ! | CAAGACAAAATTGAGAATTT+GGG | - | chr3_2:88191455-88191474 | None:intergenic | 25.0% |
| ! | ACAAGACAAAATTGAGAATT+TGG | - | chr3_2:88191456-88191475 | None:intergenic | 25.0% |
| !! | TTGATTTTCTTTTCGTTCTT+CGG | + | chr3_2:88191799-88191818 | Msa0435150:five_prime_UTR | 25.0% |
| ! | GTTAACAAAATATTAGGCTT+GGG | - | chr3_2:88191940-88191959 | None:intergenic | 25.0% |
| ! | ACTAGCAATATTATATCACA+GGG | - | chr3_2:88192298-88192317 | None:intergenic | 25.0% |
| ! | AACTAGCAATATTATATCAC+AGG | - | chr3_2:88192299-88192318 | None:intergenic | 25.0% |
| ! | AAAAGATGATCTAAAAACTG+TGG | + | chr3_2:88192611-88192630 | Msa0435150:CDS | 25.0% |
| !!! | GTTAATTGGTTTTCATCAAT+TGG | - | chr3_2:88192769-88192788 | None:intergenic | 25.0% |
| ! | TTTGTATGATCTTTGCTTAA+AGG | + | chr3_2:88192817-88192836 | Msa0435150:intron | 25.0% |
| !!! | TAGTCTTTAACATGTTTTTG+AGG | + | chr3_2:88192887-88192906 | Msa0435150:intron | 25.0% |
| !!! | GTAATTTTTTAGAAATGTGG+AGG | - | chr3_2:88192924-88192943 | None:intergenic | 25.0% |
| !! | TATTTTCAGAAATGTACTCA+CGG | + | chr3_2:88192947-88192966 | Msa0435150:intron | 25.0% |
| ! | ACGAAGAGAAAAAAAATAGA+CGG | + | chr3_2:88193131-88193150 | Msa0435150:intron | 25.0% |
| !!! | CTGACATACTTATTTTTCTT+TGG | + | chr3_2:88193248-88193267 | Msa0435150:intron | 25.0% |
| ! | TACAAATACAACTAACTATG+CGG | + | chr3_2:88193373-88193392 | Msa0435150:intron | 25.0% |
| !! | GGTATAAAATTTAAGATCTC+AGG | - | chr3_2:88193754-88193773 | None:intergenic | 25.0% |
| !! | TTATTATATTTTGCATACCC+TGG | + | chr3_2:88193786-88193805 | Msa0435150:intron | 25.0% |
| ! | TGTGAAATGAAAAGGATAAT+CGG | - | chr3_2:88193892-88193911 | None:intergenic | 25.0% |
| ! | TATCAGAATGTGAAATGAAA+AGG | - | chr3_2:88193900-88193919 | None:intergenic | 25.0% |
| !! | GAATTTGGCTTATAAGTATA+AGG | - | chr3_2:88194027-88194046 | None:intergenic | 25.0% |
| ! | CAAACACATAACTTTCAATT+TGG | - | chr3_2:88194052-88194071 | None:intergenic | 25.0% |
| ! | GTACAAAATTTGACATTACT+CGG | - | chr3_2:88194353-88194372 | None:intergenic | 25.0% |
| ! | CATTGAAAGTTATTATCACA+TGG | - | chr3_2:88194383-88194402 | None:intergenic | 25.0% |
| !! | AATGCAACTAATCATTTTAG+AGG | - | chr3_2:88194621-88194640 | None:intergenic | 25.0% |
| !!! | CATGAGTTTTATTTAAGTGT+TGG | + | chr3_2:88194655-88194674 | Msa0435150:intron | 25.0% |
| !! | TTTGGGATTTGTGTTGATTT+CGG | - | chr3_2:88191438-88191457 | None:intergenic | 30.0% |
| ! | GCAATGAATCAGATTTTCAA+AGG | - | chr3_2:88191684-88191703 | None:intergenic | 30.0% |
| CGTTAACAAAATATTAGGCT+TGG | - | chr3_2:88191941-88191960 | None:intergenic | 30.0% | |
| GTGATTTATACAGCAAGATA+AGG | - | chr3_2:88192276-88192295 | None:intergenic | 30.0% | |
| !! | GTATCTTGCTGTTAGAAAAT+TGG | + | chr3_2:88192345-88192364 | Msa0435150:intron | 30.0% |
| AAACTGAAAATAGTAGCGTA+GGG | + | chr3_2:88192480-88192499 | Msa0435150:intron | 30.0% | |
| TTGTGATTTATGTAACCTAC+AGG | + | chr3_2:88192527-88192546 | Msa0435150:intron | 30.0% | |
| TGTGATTTATGTAACCTACA+GGG | + | chr3_2:88192528-88192547 | Msa0435150:intron | 30.0% | |
| ATAGAAGCTCAACTGTTAAT+TGG | - | chr3_2:88192783-88192802 | None:intergenic | 30.0% | |
| ATTAACAGTTGAGCTTCTAT+TGG | + | chr3_2:88192783-88192802 | Msa0435150:intron | 30.0% | |
| AGCAAAGATCATACAAACAA+GGG | - | chr3_2:88192814-88192833 | None:intergenic | 30.0% | |
| AAGCAAAGATCATACAAACA+AGG | - | chr3_2:88192815-88192834 | None:intergenic | 30.0% | |
| TTCAAGGACTATAACGAAAA+TGG | - | chr3_2:88193051-88193070 | None:intergenic | 30.0% | |
| CGAAGAGAAAAAAAATAGAC+GGG | + | chr3_2:88193132-88193151 | Msa0435150:intron | 30.0% | |
| ! | TTTGCTGCAAAAATTTGCTT+GGG | + | chr3_2:88193299-88193318 | Msa0435150:intron | 30.0% |
| ! | AGATTTCAGAATCTGAAGTT+AGG | - | chr3_2:88193339-88193358 | None:intergenic | 30.0% |
| !! | AGATTCTGAAATCTATGAGA+TGG | + | chr3_2:88193345-88193364 | Msa0435150:intron | 30.0% |
| !!! | TTCTTTATTTTCATGTCCAG+CGG | + | chr3_2:88193449-88193468 | Msa0435150:intron | 30.0% |
| GTGAAATGAAAAGGATAATC+GGG | - | chr3_2:88193891-88193910 | None:intergenic | 30.0% | |
| TAAGGCTAAAATGTAGAACT+TGG | + | chr3_2:88193961-88193980 | Msa0435150:intron | 30.0% | |
| AAGGCTAAAATGTAGAACTT+GGG | + | chr3_2:88193962-88193981 | Msa0435150:intron | 30.0% | |
| TAAAATGTAGAACTTGGGAA+GGG | + | chr3_2:88193967-88193986 | Msa0435150:intron | 30.0% | |
| ACTTTCAATTTGGGTGAATT+TGG | - | chr3_2:88194042-88194061 | None:intergenic | 30.0% | |
| GTTATGATCAATTGACACAA+CGG | - | chr3_2:88194475-88194494 | None:intergenic | 30.0% | |
| TGAGAACACGCAAAAAGAAA+CGG | + | chr3_2:88191512-88191531 | Msa0435150:five_prime_UTR | 35.0% | |
| TGGGAACTGAATAAGGATTT+GGG | - | chr3_2:88191598-88191617 | None:intergenic | 35.0% | |
| TTGGGAACTGAATAAGGATT+TGG | - | chr3_2:88191599-88191618 | None:intergenic | 35.0% | |
| ACCAGTTTATCGAGTGATTA+GGG | - | chr3_2:88191632-88191651 | None:intergenic | 35.0% | |
| TACCAGTTTATCGAGTGATT+AGG | - | chr3_2:88191633-88191652 | None:intergenic | 35.0% | |
| CATCATTCGACACTGTATAT+TGG | - | chr3_2:88191989-88192008 | None:intergenic | 35.0% | |
| AGTTCAATCATCTCACGAAA+AGG | - | chr3_2:88192117-88192136 | None:intergenic | 35.0% | |
| GAAACTGAAAATAGTAGCGT+AGG | + | chr3_2:88192479-88192498 | Msa0435150:intron | 35.0% | |
| TTAGATCACTAGTCCAATTC+TGG | - | chr3_2:88192866-88192885 | None:intergenic | 35.0% | |
| TTCCAGTGAAAATCTGATTC+AGG | - | chr3_2:88193275-88193294 | None:intergenic | 35.0% | |
| ! | CTTTGCTGCAAAAATTTGCT+TGG | + | chr3_2:88193298-88193317 | Msa0435150:intron | 35.0% |
| !! | TTCTGAAATCTATGAGATGG+AGG | + | chr3_2:88193348-88193367 | Msa0435150:intron | 35.0% |
| AAATACAACTAACTATGCGG+TGG | + | chr3_2:88193376-88193395 | Msa0435150:intron | 35.0% | |
| CAATTGCCTCATTTAACACT+GGG | - | chr3_2:88193542-88193561 | None:intergenic | 35.0% | |
| ACAATTGCCTCATTTAACAC+TGG | - | chr3_2:88193543-88193562 | None:intergenic | 35.0% | |
| TTTGTGATAGCTTATGCCAA+TGG | + | chr3_2:88193607-88193626 | Msa0435150:intron | 35.0% | |
| ! | TTTGCATACCCTGGAATTTT+TGG | + | chr3_2:88193795-88193814 | Msa0435150:intron | 35.0% |
| ! | TTGCATACCCTGGAATTTTT+GGG | + | chr3_2:88193796-88193815 | Msa0435150:intron | 35.0% |
| TACTGTTATGTAAGAACCGA+AGG | - | chr3_2:88193846-88193865 | None:intergenic | 35.0% | |
| CTAAAATGTAGAACTTGGGA+AGG | + | chr3_2:88193966-88193985 | Msa0435150:intron | 35.0% | |
| !!! | AGTTGCGCTGATTTTAATGA+TGG | + | chr3_2:88194729-88194748 | Msa0435150:intron | 35.0% |
| ! | ACGATTGTCGATTGGTGATT+TGG | - | chr3_2:88191561-88191580 | None:intergenic | 40.0% |
| ACAGAATGACGATTGTCGAT+TGG | - | chr3_2:88191569-88191588 | None:intergenic | 40.0% | |
| ! | TGCGATTTGGGAACTGAATA+AGG | - | chr3_2:88191605-88191624 | None:intergenic | 40.0% |
| GATTAGGGTTCATGCGATTT+GGG | - | chr3_2:88191617-88191636 | None:intergenic | 40.0% | |
| TGATTAGGGTTCATGCGATT+TGG | - | chr3_2:88191618-88191637 | None:intergenic | 40.0% | |
| ACCCTAATCACTCGATAAAC+TGG | + | chr3_2:88191628-88191647 | Msa0435150:five_prime_UTR | 40.0% | |
| GTTGATGTTCTTATGCTCAC+CGG | + | chr3_2:88192052-88192071 | Msa0435150:intron | 40.0% | |
| CTTCAGATCAAATGCATGTC+CGG | - | chr3_2:88192074-88192093 | None:intergenic | 40.0% | |
| ! | TTGATCTGAAGTGTCTGTGT+CGG | + | chr3_2:88192083-88192102 | Msa0435150:intron | 40.0% |
| AGCAGTTGTGTTGCAGATTT+AGG | + | chr3_2:88192439-88192458 | Msa0435150:intron | 40.0% | |
| TAACCTACAGGGTAGAGAAA+AGG | + | chr3_2:88192539-88192558 | Msa0435150:intron | 40.0% | |
| ! | TATCCTTTTCTCTACCCTGT+AGG | - | chr3_2:88192545-88192564 | None:intergenic | 40.0% |
| ! | GCATTTCTCAATTTTTGCGC+TGG | - | chr3_2:88192575-88192594 | None:intergenic | 40.0% |
| GATCTAAAAACTGTGGCACT+TGG | + | chr3_2:88192618-88192637 | Msa0435150:CDS | 40.0% | |
| GGGATCTAGGTAGTTTATCT+TGG | - | chr3_2:88192649-88192668 | None:intergenic | 40.0% | |
| AGATAAACTACCTAGATCCC+AGG | + | chr3_2:88192649-88192668 | Msa0435150:CDS | 40.0% | |
| GCATGAGGTTCCTATTGAAA+AGG | + | chr3_2:88192695-88192714 | Msa0435150:CDS | 40.0% | |
| AGGTTCCTATTGAAAAGGTC+TGG | + | chr3_2:88192700-88192719 | Msa0435150:intron | 40.0% | |
| ! | GAAGTCCAGACCTTTTCAAT+AGG | - | chr3_2:88192708-88192727 | None:intergenic | 40.0% |
| TGGGAAGCAACAATAGCTTA+CGG | - | chr3_2:88192843-88192862 | None:intergenic | 40.0% | |
| ATCACTAGTCCAATTCTGGT+GGG | - | chr3_2:88192862-88192881 | None:intergenic | 40.0% | |
| TTCAGAAATGTACTCACGGA+TGG | + | chr3_2:88192951-88192970 | Msa0435150:intron | 40.0% | |
| TTTGCAGCATAAATTTCCGC+TGG | - | chr3_2:88193468-88193487 | None:intergenic | 40.0% | |
| GTGATACCCAGTGTTAAATG+AGG | + | chr3_2:88193533-88193552 | Msa0435150:intron | 40.0% | |
| TGATAGCTTATGCCAATGGT+GGG | + | chr3_2:88193611-88193630 | Msa0435150:intron | 40.0% | |
| TGAACATTCAAACCCACCAT+TGG | - | chr3_2:88193626-88193645 | None:intergenic | 40.0% | |
| TCAAAATGGCACTCATTGGA+AGG | - | chr3_2:88193673-88193692 | None:intergenic | 40.0% | |
| !!! | TCCAATGAGTGCCATTTTGA+TGG | + | chr3_2:88193673-88193692 | Msa0435150:intron | 40.0% |
| AGTGCAACCCAAAAATTCCA+GGG | - | chr3_2:88193806-88193825 | None:intergenic | 40.0% | |
| AAGTGCAACCCAAAAATTCC+AGG | - | chr3_2:88193807-88193826 | None:intergenic | 40.0% | |
| GGTTGCGATTCAGAGAGTTA+TGG | - | chr3_2:88191540-88191559 | None:intergenic | 45.0% | |
| TCGTTCTTCGGCAAGCTTTA+CGG | + | chr3_2:88191811-88191830 | Msa0435150:five_prime_UTR | 45.0% | |
| ACACAACTGCTGATCCTACA+CGG | - | chr3_2:88192430-88192449 | None:intergenic | 45.0% | |
| CAACTGATATCCTGGGATCT+AGG | - | chr3_2:88192662-88192681 | None:intergenic | 45.0% | |
| ! | TTGTTGCTTCCCACCAGAAT+TGG | + | chr3_2:88192850-88192869 | Msa0435150:intron | 45.0% |
| GATCACTAGTCCAATTCTGG+TGG | - | chr3_2:88192863-88192882 | None:intergenic | 45.0% | |
| ! | GGCCTGAATCAGATTTTCAC+TGG | + | chr3_2:88193270-88193289 | Msa0435150:intron | 45.0% |
| GTGATAGCTTATGCCAATGG+TGG | + | chr3_2:88193610-88193629 | Msa0435150:intron | 45.0% | |
| GCCATCAAAATGGCACTCAT+TGG | - | chr3_2:88193677-88193696 | None:intergenic | 45.0% | |
| TGTAAGAACCGAAGGACATG+CGG | - | chr3_2:88193838-88193857 | None:intergenic | 45.0% | |
| GAAAAGGATAATCGGGCAGT+TGG | - | chr3_2:88193884-88193903 | None:intergenic | 45.0% | |
| !! | ATATAATAAAACAATATAAT+TGG | - | chr3_2:88193775-88193794 | None:intergenic | 5.0% |
| !!! | TTTTTTAATATGTTTTAAAA+TGG | + | chr3_2:88194535-88194554 | Msa0435150:intron | 5.0% |
| GTGCATACTGATGTCCGTGT+AGG | + | chr3_2:88192413-88192432 | Msa0435150:intron | 50.0% | |
| ATCCCAGGATATCAGTTGCC+TGG | + | chr3_2:88192664-88192683 | Msa0435150:CDS | 50.0% | |
| CACCAGGCAACTGATATCCT+GGG | - | chr3_2:88192669-88192688 | None:intergenic | 50.0% | |
| TATCAGTTGCCTGGTGCAAG+CGG | + | chr3_2:88192673-88192692 | Msa0435150:CDS | 50.0% | |
| ACATCCATTCTTGGCGTCAG+TGG | - | chr3_2:88194876-88194895 | None:intergenic | 50.0% | |
| GACGCCAAGAATGGATGTTC+TGG | + | chr3_2:88194878-88194897 | Msa0435150:CDS | 50.0% | |
| CACGCCAGAACATCCATTCT+TGG | - | chr3_2:88194885-88194904 | None:intergenic | 50.0% | |
| GCACCAGGCAACTGATATCC+TGG | - | chr3_2:88192670-88192689 | None:intergenic | 55.0% | |
| TTGGCGTCGCGCCATCAAAA+TGG | - | chr3_2:88193687-88193706 | None:intergenic | 55.0% | |
| TGCACACCCTCAAGTGCACT+TGG | - | chr3_2:88193722-88193741 | None:intergenic | 55.0% | |
| GCATTGCACCGCATGTCCTT+CGG | + | chr3_2:88193827-88193846 | Msa0435150:intron | 55.0% | |
| ! | GGATAATCGGGCAGTTGGTG+AGG | - | chr3_2:88193879-88193898 | None:intergenic | 55.0% |
| AAGTTTGCACCCCCTGATCC+AGG | + | chr3_2:88194838-88194857 | Msa0435150:intron | 55.0% | |
| AGTTTGCACCCCCTGATCCA+GGG | + | chr3_2:88194839-88194858 | Msa0435150:intron | 55.0% | |
| TCCATTCTTGGCGTCAGTGG+CGG | - | chr3_2:88194873-88194892 | None:intergenic | 55.0% | |
| ! | AACCTCATGCCGCTTGCACC+AGG | - | chr3_2:88192685-88192704 | None:intergenic | 60.0% |
| GCGGAGCCAAGTGCACTTGA+GGG | + | chr3_2:88193713-88193732 | Msa0435150:intron | 60.0% | |
| ATCCAGGACCCTGGATCAGG+GGG | - | chr3_2:88194850-88194869 | None:intergenic | 60.0% | |
| GATCCAGGACCCTGGATCAG+GGG | - | chr3_2:88194851-88194870 | None:intergenic | 60.0% | |
| GGATCCAGGACCCTGGATCA+GGG | - | chr3_2:88194852-88194871 | None:intergenic | 60.0% | |
| TCCGCCACTGACGCCAAGAA+TGG | + | chr3_2:88194869-88194888 | Msa0435150:CDS | 60.0% | |
| TGCCTGGTGCAAGCGGCATG+AGG | + | chr3_2:88192680-88192699 | Msa0435150:CDS | 65.0% | |
| ! | TGATGGCGCGACGCCAAGCA+AGG | + | chr3_2:88193690-88193709 | Msa0435150:intron | 65.0% |
| GATGGCGCGACGCCAAGCAA+GGG | + | chr3_2:88193691-88193710 | Msa0435150:intron | 65.0% | |
| CACTTGGCTCCGCCCTTGCT+TGG | - | chr3_2:88193706-88193725 | None:intergenic | 65.0% | |
| GGCGGAGCCAAGTGCACTTG+AGG | + | chr3_2:88193712-88193731 | Msa0435150:intron | 65.0% | |
| CGGATCCAGGACCCTGGATC+AGG | - | chr3_2:88194853-88194872 | None:intergenic | 65.0% | |
| !! | TTGGCGTCAGTGGCGGATCC+AGG | - | chr3_2:88194866-88194885 | None:intergenic | 65.0% |
| CACCCCCTGATCCAGGGTCC+TGG | + | chr3_2:88194845-88194864 | Msa0435150:intron | 70.0% | |
| !! | CAGTGGCGGATCCAGGACCC+TGG | - | chr3_2:88194859-88194878 | None:intergenic | 70.0% |
| GGCGCGACGCCAAGCAAGGG+CGG | + | chr3_2:88193694-88193713 | Msa0435150:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 88191435 | 88194907 | 88191435 | ID=Msa0435150;Name=Msa0435150 |
| chr3_2 | mRNA | 88191435 | 88194907 | 88191435 | ID=Msa0435150-mRNA-1;Parent=Msa0435150;Name=Msa0435150-mRNA-1;_AED=0.23;_eAED=0.23;_QI=440|0.5|0.66|0.66|0.5|0.33|3|0|57 |
| chr3_2 | exon | 88191435 | 88191832 | 88191435 | ID=Msa0435150-mRNA-1:exon:25929;Parent=Msa0435150-mRNA-1 |
| chr3_2 | exon | 88192549 | 88192716 | 88192549 | ID=Msa0435150-mRNA-1:exon:25930;Parent=Msa0435150-mRNA-1 |
| chr3_2 | exon | 88194860 | 88194907 | 88194860 | ID=Msa0435150-mRNA-1:exon:25931;Parent=Msa0435150-mRNA-1 |
| chr3_2 | five_prime_UTR | 88191435 | 88191832 | 88191435 | ID=Msa0435150-mRNA-1:five_prime_utr;Parent=Msa0435150-mRNA-1 |
| chr3_2 | five_prime_UTR | 88192549 | 88192590 | 88192549 | ID=Msa0435150-mRNA-1:five_prime_utr;Parent=Msa0435150-mRNA-1 |
| chr3_2 | CDS | 88192591 | 88192716 | 88192591 | ID=Msa0435150-mRNA-1:cds;Parent=Msa0435150-mRNA-1 |
| chr3_2 | CDS | 88194860 | 88194907 | 88194860 | ID=Msa0435150-mRNA-1:cds;Parent=Msa0435150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
