Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498550 | XP_003599800.1 | 96.135 | 414 | 12 | 3 | 1 | 412 | 1 | 412 | 0.0 | 815 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498550 | sp|Q680C0|GDL62_ARATH | 28.056 | 360 | 225 | 9 | 40 | 383 | 9 | 350 | 1.05e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498550 | G7IXG5 | 96.135 | 414 | 12 | 3 | 1 | 412 | 1 | 412 | 0.0 | 815 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0498550 | 0.818241 | 2.172051e-52 | -8.615850e-47 |
| Msa0020540 | Msa0498550 | 0.812745 | 3.632339e-51 | -8.615850e-47 |
| Msa0032980 | Msa0498550 | 0.800341 | 1.508447e-48 | -8.615850e-47 |
| Msa0062340 | Msa0498550 | 0.820363 | 7.136025e-53 | -8.615850e-47 |
| Msa0074360 | Msa0498550 | 0.802005 | 6.886654e-49 | -8.615850e-47 |
| Msa0077560 | Msa0498550 | 0.803745 | 3.010696e-49 | -8.615850e-47 |
| Msa0106630 | Msa0498550 | 0.813524 | 2.450436e-51 | -8.615850e-47 |
| Msa0125590 | Msa0498550 | 0.800113 | 1.678390e-48 | -8.615850e-47 |
| Msa0140380 | Msa0498550 | 0.812804 | 3.525718e-51 | -8.615850e-47 |
| Msa0153210 | Msa0498550 | 0.811937 | 5.452252e-51 | -8.615850e-47 |
| Msa0159590 | Msa0498550 | 0.814543 | 1.460171e-51 | -8.615850e-47 |
| Msa0159620 | Msa0498550 | 0.821215 | 4.546334e-53 | -8.615850e-47 |
| Msa0232760 | Msa0498550 | 0.813494 | 2.487564e-51 | -8.615850e-47 |
| Msa0373500 | Msa0498550 | 0.820904 | 5.360971e-53 | -8.615850e-47 |
| Msa0383000 | Msa0498550 | 0.826531 | 2.577122e-54 | -8.615850e-47 |
| Msa0405620 | Msa0498550 | 0.809853 | 1.541131e-50 | -8.615850e-47 |
| Msa0433150 | Msa0498550 | 0.803640 | 3.165099e-49 | -8.615850e-47 |
| Msa0433760 | Msa0498550 | 0.802849 | 4.614711e-49 | -8.615850e-47 |
| Msa0468620 | Msa0498550 | 0.812548 | 4.011638e-51 | -8.615850e-47 |
| Msa0477630 | Msa0498550 | 0.803000 | 4.296125e-49 | -8.615850e-47 |
| Msa0480730 | Msa0498550 | 0.800213 | 1.601232e-48 | -8.615850e-47 |
| Msa0481890 | Msa0498550 | 0.823614 | 1.260039e-53 | -8.615850e-47 |
| Msa0269210 | Msa0498550 | 0.810842 | 9.427503e-51 | -8.615850e-47 |
| Msa0358680 | Msa0498550 | 0.865132 | 7.368162e-65 | -8.615850e-47 |
| Msa0498550 | Msa0514020 | 0.802180 | 6.339549e-49 | -8.615850e-47 |
| Msa0498550 | Msa0514500 | 0.812922 | 3.322811e-51 | -8.615850e-47 |
| Msa0498550 | Msa0521680 | 0.815076 | 1.112647e-51 | -8.615850e-47 |
| Msa0498550 | Msa0559100 | 0.809640 | 1.712157e-50 | -8.615850e-47 |
| Msa0498550 | Msa0563900 | 0.807303 | 5.398075e-50 | -8.615850e-47 |
| Msa0498550 | Msa0569530 | 0.801072 | 1.069874e-48 | -8.615850e-47 |
| Msa0498550 | Msa0607800 | 0.822684 | 2.077019e-53 | -8.615850e-47 |
| Msa0498550 | Msa0613630 | 0.819275 | 1.265292e-52 | -8.615850e-47 |
| Msa0498550 | Msa0621710 | 0.806897 | 6.579811e-50 | -8.615850e-47 |
| Msa0498550 | Msa0648040 | 0.818692 | 1.716282e-52 | -8.615850e-47 |
| Msa0498550 | Msa0690740 | 0.816998 | 4.141606e-52 | -8.615850e-47 |
| Msa0498550 | Msa0709440 | 0.822076 | 2.874768e-53 | -8.615850e-47 |
| Msa0498550 | Msa0714520 | 0.823766 | 1.160731e-53 | -8.615850e-47 |
| Msa0498550 | Msa0754430 | 0.806231 | 9.096800e-50 | -8.615850e-47 |
| Msa0498550 | Msa0754450 | 0.813418 | 2.585881e-51 | -8.615850e-47 |
| Msa0498550 | Msa0780910 | 0.813572 | 2.391723e-51 | -8.615850e-47 |
| Msa0498550 | Msa0821160 | 0.806402 | 8.372654e-50 | -8.615850e-47 |
| Msa0498550 | Msa0855230 | 0.800313 | 1.528385e-48 | -8.615850e-47 |
| Msa0498550 | Msa0931590 | 0.825067 | 5.737923e-54 | -8.615850e-47 |
| Msa0498550 | Msa1084530 | 0.827890 | 1.218476e-54 | -8.615850e-47 |
| Msa0498550 | Msa1125820 | 0.824125 | 9.561866e-54 | -8.615850e-47 |
| Msa0498550 | Msa1125990 | 0.820808 | 5.640644e-53 | -8.615850e-47 |
| Msa0498550 | Msa1171290 | 0.824835 | 6.509252e-54 | -8.615850e-47 |
| Msa0498550 | Msa1188790 | 0.805732 | 1.158118e-49 | -8.615850e-47 |
| Msa0498550 | Msa1201780 | 0.829393 | 5.278785e-55 | -8.615850e-47 |
| Msa0498550 | Msa1218820 | 0.811274 | 7.599061e-51 | -8.615850e-47 |
| Msa0498550 | Msa1254540 | 0.824671 | 7.112404e-54 | -8.615850e-47 |
| Msa0498550 | Msa1294460 | 0.815259 | 1.013137e-51 | -8.615850e-47 |
| Msa0498550 | Msa1294790 | 0.805402 | 1.358325e-49 | -8.615850e-47 |
| Msa0498550 | Msa1300460 | 0.811433 | 7.017237e-51 | -8.615850e-47 |
| Msa0498550 | Msa1332950 | 0.827421 | 1.579245e-54 | -8.615850e-47 |
| Msa0498550 | Msa1366150 | 0.801595 | 8.359399e-49 | -8.615850e-47 |
| Msa0498550 | Msa1381470 | 0.819809 | 9.557295e-53 | -8.615850e-47 |
| Msa0498550 | Msa1384150 | 0.822365 | 2.462849e-53 | -8.615850e-47 |
| Msa0498550 | Msa1387440 | 0.823326 | 1.471145e-53 | -8.615850e-47 |
| Msa0498550 | Msa1429070 | 0.813147 | 2.965400e-51 | -8.615850e-47 |
| Msa0498550 | Msa1450190 | 0.802678 | 5.005929e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498550 | MtrunA17_Chr3g0096121 | 96.135 | 414 | 12 | 3 | 1 | 412 | 1 | 412 | 0.0 | 815 |
| Msa0498550 | MtrunA17_Chr5g0442991 | 72.283 | 368 | 81 | 6 | 36 | 394 | 13 | 368 | 0.0 | 539 |
| Msa0498550 | MtrunA17_Chr5g0443021 | 58.678 | 363 | 133 | 6 | 43 | 395 | 16 | 371 | 2.50e-138 | 405 |
| Msa0498550 | MtrunA17_Chr5g0443011 | 55.254 | 295 | 107 | 6 | 103 | 384 | 7 | 289 | 3.55e-101 | 302 |
| Msa0498550 | MtrunA17_Chr8g0388281 | 33.518 | 361 | 201 | 8 | 39 | 383 | 7 | 344 | 9.68e-59 | 195 |
| Msa0498550 | MtrunA17_Chr5g0396551 | 33.889 | 360 | 193 | 9 | 40 | 380 | 8 | 341 | 2.87e-52 | 178 |
| Msa0498550 | MtrunA17_Chr5g0410331 | 30.495 | 364 | 202 | 7 | 39 | 380 | 7 | 341 | 3.97e-48 | 167 |
| Msa0498550 | MtrunA17_Chr5g0443031 | 44.516 | 155 | 61 | 6 | 246 | 394 | 3 | 138 | 2.95e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498550 | AT5G50890.1 | 68.717 | 374 | 105 | 4 | 30 | 394 | 36 | 406 | 0.0 | 533 |
| Msa0498550 | AT2G05260.1 | 29.155 | 367 | 221 | 8 | 40 | 383 | 8 | 358 | 4.55e-48 | 167 |
| Msa0498550 | AT5G24230.1 | 30.239 | 377 | 216 | 9 | 17 | 369 | 1 | 354 | 2.69e-47 | 166 |
| Msa0498550 | AT5G24230.3 | 30.239 | 377 | 216 | 9 | 17 | 369 | 1 | 354 | 2.69e-47 | 166 |
| Msa0498550 | AT5G24230.2 | 30.239 | 377 | 216 | 9 | 17 | 369 | 1 | 354 | 2.69e-47 | 166 |
| Msa0498550 | AT4G10955.2 | 28.056 | 360 | 225 | 9 | 40 | 383 | 9 | 350 | 1.06e-45 | 161 |
| Msa0498550 | AT4G10955.1 | 28.056 | 360 | 225 | 9 | 40 | 383 | 9 | 350 | 1.06e-45 | 161 |
| Msa0498550 | AT2G05260.2 | 31.884 | 276 | 172 | 5 | 40 | 315 | 8 | 267 | 1.30e-44 | 157 |
| Msa0498550 | AT5G24220.1 | 27.577 | 359 | 213 | 8 | 39 | 377 | 24 | 355 | 5.54e-42 | 152 |
| Msa0498550 | AT5G24180.1 | 28.150 | 373 | 214 | 10 | 29 | 377 | 12 | 354 | 1.06e-39 | 146 |
| Msa0498550 | AT5G24200.2 | 31.769 | 277 | 161 | 6 | 40 | 315 | 8 | 257 | 9.64e-34 | 129 |
| Msa0498550 | AT5G24200.3 | 31.769 | 277 | 161 | 6 | 40 | 315 | 8 | 257 | 9.64e-34 | 129 |
| Msa0498550 | AT5G24200.1 | 31.769 | 277 | 161 | 6 | 40 | 315 | 8 | 257 | 9.64e-34 | 129 |
| Msa0498550 | AT5G24210.2 | 27.887 | 355 | 199 | 12 | 43 | 371 | 16 | 339 | 1.01e-26 | 110 |
| Msa0498550 | AT5G24210.3 | 27.887 | 355 | 199 | 12 | 43 | 371 | 16 | 339 | 1.01e-26 | 110 |
| Msa0498550 | AT5G24210.1 | 27.887 | 355 | 199 | 12 | 43 | 371 | 16 | 339 | 1.01e-26 | 110 |
| Msa0498550 | AT5G24190.1 | 23.967 | 242 | 143 | 5 | 163 | 377 | 3 | 230 | 4.79e-16 | 77.8 |
Find 78 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTTGGTTAATCTTAAT+TGG | 0.166949 | 3_4:-35331557 | Msa0498550:CDS |
| ACATGACAACCATTATTATT+TGG | 0.185396 | 3_4:+35328743 | None:intergenic |
| AGCTTGAAGAATCATAATTT+TGG | 0.238345 | 3_4:-35328893 | Msa0498550:CDS |
| CGTGTCTGGTCCAAGGAATT+TGG | 0.289105 | 3_4:-35331571 | Msa0498550:CDS |
| CTTAGTGCTAAAACAGCTTT+TGG | 0.294791 | 3_4:+35329325 | None:intergenic |
| ATGACAGTTCTCTTGTAGTT+TGG | 0.302940 | 3_4:+35329565 | None:intergenic |
| AAAGGTGTTTGTTGTGAATA+AGG | 0.307684 | 3_4:-35328714 | Msa0498550:CDS |
| CTCGCTTGGGAAAGCCTAAA+AGG | 0.308656 | 3_4:-35329244 | Msa0498550:CDS |
| TCTTTCTCATTGGATCTATC+AGG | 0.309753 | 3_4:+35328800 | None:intergenic |
| TTGAAGGGAATCCACCAATT+TGG | 0.321746 | 3_4:+35329466 | None:intergenic |
| TCATGTTGTTGTTAAGGTTT+CGG | 0.341956 | 3_4:+35331712 | None:intergenic |
| TGTGTAGCAGGACATTCATT+AGG | 0.374475 | 3_4:-35329151 | Msa0498550:CDS |
| TAATTCTTCTCAAGTATTGC+AGG | 0.375963 | 3_4:-35328555 | Msa0498550:CDS |
| AGGTATCAACACAAGCAAAT+AGG | 0.380464 | 3_4:+35328472 | None:intergenic |
| AAAATGCTCTAGCTCCAAAT+TGG | 0.383483 | 3_4:-35329480 | Msa0498550:CDS |
| CAGCTTAAATCTTTGTATAC+AGG | 0.386722 | 3_4:-35328593 | Msa0498550:CDS |
| TAATAAGGTCTTGCTCTCAT+TGG | 0.387838 | 3_4:-35328518 | Msa0498550:three_prime_UTR |
| ATGACCTTCGGTTCCTCGCT+TGG | 0.396243 | 3_4:-35329258 | Msa0498550:CDS |
| AGCAGCATCCTCTTTCTCAT+TGG | 0.402731 | 3_4:+35328790 | None:intergenic |
| GGAAGAAGAAGTAAAAGAAC+TGG | 0.403485 | 3_4:-35331664 | Msa0498550:CDS |
| CCTTATGCATTTCACGTGTC+TGG | 0.403890 | 3_4:-35331585 | Msa0498550:CDS |
| AAAAGAACTGGAAGAGGAAA+AGG | 0.409815 | 3_4:-35331652 | Msa0498550:CDS |
| TCAACTCCTTCGCTGCTTGA+AGG | 0.414457 | 3_4:+35328971 | None:intergenic |
| TGACCTTCGGTTCCTCGCTT+GGG | 0.418160 | 3_4:-35329257 | Msa0498550:CDS |
| AGTAGCAATGTTTGTGTAGC+AGG | 0.421432 | 3_4:-35329163 | Msa0498550:CDS |
| GGAAAGGCTAGTAAATAATA+AGG | 0.423775 | 3_4:-35328533 | Msa0498550:exon |
| TTAAGATTAACCAAATTCCT+TGG | 0.425756 | 3_4:+35331561 | None:intergenic |
| AAATCAGTGTCTGATGCATA+TGG | 0.439991 | 3_4:-35329187 | Msa0498550:CDS |
| TGGTCTGATCAGTACTAAAT+CGG | 0.441069 | 3_4:+35329357 | None:intergenic |
| AGAAGTAAAAGAACTGGAAG+AGG | 0.451551 | 3_4:-35331658 | Msa0498550:CDS |
| GTTGAAAAGCAAGGAGAAGA+AGG | 0.452574 | 3_4:-35331621 | Msa0498550:CDS |
| TCGTGTTCATGTTGTTGTTA+AGG | 0.454182 | 3_4:+35331706 | None:intergenic |
| CGAGGAACCGAAGGTCATCT+TGG | 0.457144 | 3_4:+35329263 | None:intergenic |
| CAGAAGTTTCATGAAGCTCA+TGG | 0.477562 | 3_4:-35328686 | Msa0498550:CDS |
| AATGTCGGTCCAAATAATAA+TGG | 0.479362 | 3_4:-35328752 | Msa0498550:CDS |
| TTTCGGTGCAATACTCGAAT+GGG | 0.486400 | 3_4:-35329398 | Msa0498550:CDS |
| TTTGTTAGCTTGTACTTGAA+GGG | 0.500967 | 3_4:+35329451 | None:intergenic |
| TATACAGGTGGTAGTGGTAG+TGG | 0.501866 | 3_4:-35328578 | Msa0498550:CDS |
| TGATAGATCCAATGAGAAAG+AGG | 0.502016 | 3_4:-35328798 | Msa0498550:CDS |
| GAAACAACAACAAGAAGAGT+TGG | 0.503495 | 3_4:-35328931 | Msa0498550:CDS |
| GCAGGACATTCATTAGGAGC+TGG | 0.512468 | 3_4:-35329145 | Msa0498550:CDS |
| ATGCTCTAGCTCCAAATTGG+TGG | 0.515850 | 3_4:-35329477 | Msa0498550:CDS |
| ATTGTGTTTGAAATCTGAAG+AGG | 0.516069 | 3_4:+35331764 | None:intergenic |
| GAGATCTCATTAGTTCTAGC+TGG | 0.517088 | 3_4:-35331533 | Msa0498550:intron |
| GGAAAATCGTTAGCAAAAGA+AGG | 0.524713 | 3_4:-35329106 | Msa0498550:CDS |
| CCAGACACGTGAAATGCATA+AGG | 0.536683 | 3_4:+35331585 | None:intergenic |
| TTCTCAAGTATTGCAGGGAA+AGG | 0.542324 | 3_4:-35328549 | Msa0498550:CDS |
| CAACAACATGAACACGAACA+TGG | 0.543272 | 3_4:-35331700 | Msa0498550:exon |
| TCTTTGTATACAGGTGGTAG+TGG | 0.544485 | 3_4:-35328584 | Msa0498550:CDS |
| AAAGCCTAAAAGGTTCTGTA+AGG | 0.545305 | 3_4:-35329234 | Msa0498550:CDS |
| GAGACATCCAAGATGACCTT+CGG | 0.546318 | 3_4:-35329270 | Msa0498550:CDS |
| AGAGGAAAGAGCGGAAGTGA+AGG | 0.546716 | 3_4:+35331782 | None:intergenic |
| GGATGTCTCTTCGCATTGTG+TGG | 0.558898 | 3_4:+35329284 | None:intergenic |
| GTTGTTGTGGTTGAAAAGCA+AGG | 0.564724 | 3_4:-35331630 | Msa0498550:CDS |
| GATTCTCTTCCAAGCTAACT+CGG | 0.565024 | 3_4:+35329006 | None:intergenic |
| AATTCTTCTCAAGTATTGCA+GGG | 0.565859 | 3_4:-35328554 | Msa0498550:CDS |
| GCTATGAGTCTAAGAAACAT+TGG | 0.572525 | 3_4:-35329037 | Msa0498550:CDS |
| CATTTCACGTGTCTGGTCCA+AGG | 0.574642 | 3_4:-35331578 | Msa0498550:CDS |
| ACAAGAAGAGTTGGATGCCA+TGG | 0.575559 | 3_4:-35328922 | Msa0498550:CDS |
| CTCATAGCAATTGAAACAGA+AGG | 0.596681 | 3_4:+35329052 | None:intergenic |
| ATGCTTCCTTCAAGCAGCGA+AGG | 0.596900 | 3_4:-35328977 | Msa0498550:CDS |
| TTTCCCAAGCGAGGAACCGA+AGG | 0.599086 | 3_4:+35329254 | None:intergenic |
| CTTAAATCTTTGTATACAGG+TGG | 0.607222 | 3_4:-35328590 | Msa0498550:CDS |
| GATAATAACAAGGAGAATGT+CGG | 0.609120 | 3_4:-35328767 | Msa0498550:CDS |
| TGGTTGTCATGTTGCTGCAA+AGG | 0.611656 | 3_4:-35328732 | Msa0498550:CDS |
| GTTGATAATATCAACAACGA+TGG | 0.618756 | 3_4:-35328953 | Msa0498550:CDS |
| TAGCAATTGAAACAGAAGGC+GGG | 0.620328 | 3_4:+35329056 | None:intergenic |
| CTCATGGAATTGAACAATGG+TGG | 0.620564 | 3_4:-35328670 | Msa0498550:CDS |
| GAACATGGAAATCACTACAA+AGG | 0.627680 | 3_4:-35331685 | Msa0498550:CDS |
| GAAATCTGAAGAGGAAAGAG+CGG | 0.643468 | 3_4:+35331773 | None:intergenic |
| TTCTTCAAGCTAGTTAACCA+TGG | 0.647087 | 3_4:+35328905 | None:intergenic |
| GGATGCTGCTGATAATAACA+AGG | 0.657880 | 3_4:-35328777 | Msa0498550:CDS |
| GGAAGAGGAAAAGGTTGTTG+TGG | 0.677635 | 3_4:-35331643 | Msa0498550:CDS |
| CTATTGTTCACATAGAGATG+AGG | 0.677824 | 3_4:+35328854 | None:intergenic |
| ATAGCAATTGAAACAGAAGG+CGG | 0.679402 | 3_4:+35329055 | None:intergenic |
| TTAGTACTGATCAGACCAAG+TGG | 0.693039 | 3_4:-35329352 | Msa0498550:CDS |
| ACACTTATAGACGAAAGAGA+CGG | 0.699729 | 3_4:-35329427 | Msa0498550:CDS |
| AAGCTCATGGAATTGAACAA+TGG | 0.723699 | 3_4:-35328673 | Msa0498550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAGTGAATTTAAAATT+TGG | - | chr3_4:35328754-35328773 | Msa0498550:CDS | 10.0% |
| !!! | AGAATTTTGAATTTAAATTT+AGG | - | chr3_4:35328909-35328928 | Msa0498550:CDS | 10.0% |
| !!! | GAATTTTGAATTTAAATTTA+GGG | - | chr3_4:35328910-35328929 | Msa0498550:CDS | 10.0% |
| !! | ATTAAGGAAATAAATAAATT+GGG | + | chr3_4:35329327-35329346 | None:intergenic | 10.0% |
| !! | AATTAAGGAAATAAATAAAT+TGG | + | chr3_4:35329328-35329347 | None:intergenic | 10.0% |
| !!! | ATTTTTTAAAATTGAGATAA+AGG | - | chr3_4:35329498-35329517 | Msa0498550:CDS | 10.0% |
| !! | TTTATACATTTGTAATTTAT+TGG | - | chr3_4:35330081-35330100 | Msa0498550:intron | 10.0% |
| !!! | CTTTCTTATTTTTATTTTTT+TGG | - | chr3_4:35331732-35331751 | Msa0498550:five_prime_UTR | 10.0% |
| !!! | ATTTGATTTGATGAAAATTT+TGG | - | chr3_4:35328696-35328715 | Msa0498550:CDS | 15.0% |
| !!! | AAATTTGGTTTTATTTGAAA+TGG | - | chr3_4:35328769-35328788 | Msa0498550:CDS | 15.0% |
| !!! | AATTTAAGTTAGTTTCTAAA+TGG | - | chr3_4:35328878-35328897 | Msa0498550:CDS | 15.0% |
| !!! | ATTTAAGTTAGTTTCTAAAT+GGG | - | chr3_4:35328879-35328898 | Msa0498550:CDS | 15.0% |
| !! | TTATTTACTCAAATTATTAG+CGG | + | chr3_4:35329113-35329132 | None:intergenic | 15.0% |
| !! | AATTTAAGAAAATAGATATG+AGG | - | chr3_4:35329873-35329892 | Msa0498550:intron | 15.0% |
| !! | ATTTAAGAAAATAGATATGA+GGG | - | chr3_4:35329874-35329893 | Msa0498550:intron | 15.0% |
| !! | AATAAGTTACAATTGTATAA+AGG | + | chr3_4:35330368-35330387 | None:intergenic | 15.0% |
| !! | TTTATACAATTGTAACTTAT+TGG | - | chr3_4:35330367-35330386 | Msa0498550:intron | 15.0% |
| !! | AAAAATAAGAAAGTTAAACA+AGG | + | chr3_4:35331725-35331744 | None:intergenic | 15.0% |
| !!! | TGTTTTAGATTATTTCCTTT+GGG | + | chr3_4:35328371-35328390 | None:intergenic | 20.0% |
| !!! | TTGTTTTAGATTATTTCCTT+TGG | + | chr3_4:35328372-35328391 | None:intergenic | 20.0% |
| !! | ACAAAAGCTACAAATAAAAA+GGG | + | chr3_4:35328673-35328692 | None:intergenic | 20.0% |
| !! | AACAAAAGCTACAAATAAAA+AGG | + | chr3_4:35328674-35328693 | None:intergenic | 20.0% |
| !!! | AATTTTGGTTTTTGTTATGT+CGG | - | chr3_4:35328711-35328730 | Msa0498550:CDS | 20.0% |
| !!! | ATAATTTTTTGATGAGTTTC+TGG | - | chr3_4:35329223-35329242 | Msa0498550:CDS | 20.0% |
| !!! | TTCCTTAATTGTTTTGTAAT+TGG | - | chr3_4:35329338-35329357 | Msa0498550:CDS | 20.0% |
| !!! | TCCTTAATTGTTTTGTAATT+GGG | - | chr3_4:35329339-35329358 | Msa0498550:CDS | 20.0% |
| !! | AAGAAAATCCATGATATTAA+TGG | + | chr3_4:35329399-35329418 | None:intergenic | 20.0% |
| !! | ATTCATATCAAAACTAAACA+GGG | + | chr3_4:35329426-35329445 | None:intergenic | 20.0% |
| !! | AATTCATATCAAAACTAAAC+AGG | + | chr3_4:35329427-35329446 | None:intergenic | 20.0% |
| !!! | ATATAAAAACCTGTTTTAAC+TGG | - | chr3_4:35329787-35329806 | Msa0498550:intron | 20.0% |
| !! | AAACTTAAATAATTGAAAGC+TGG | + | chr3_4:35330052-35330071 | None:intergenic | 20.0% |
| !! | TTTATAATATTGTTTGAGAG+AGG | - | chr3_4:35330449-35330468 | Msa0498550:intron | 20.0% |
| !!! | ATTATATGAAGTTCTAGTAA+AGG | + | chr3_4:35330555-35330574 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTGGACAAGT+TGG | - | chr3_4:35331741-35331760 | Msa0498550:five_prime_UTR | 20.0% |
| !! | TTTTAGATTATTTCCTTTGG+GGG | + | chr3_4:35328369-35328388 | None:intergenic | 25.0% |
| !!! | GTTTTAGATTATTTCCTTTG+GGG | + | chr3_4:35328370-35328389 | None:intergenic | 25.0% |
| ! | TTAAGATTAACCAAATTCCT+TGG | + | chr3_4:35328616-35328635 | None:intergenic | 25.0% |
| ! | GGAATTTGGTTAATCTTAAT+TGG | - | chr3_4:35328617-35328636 | Msa0498550:CDS | 25.0% |
| ! | TTGGTGAAAATTTGAGAAAA+TGG | - | chr3_4:35328847-35328866 | Msa0498550:CDS | 25.0% |
| ! | TGGTGAAAATTTGAGAAAAT+GGG | - | chr3_4:35328848-35328867 | Msa0498550:CDS | 25.0% |
| !! | ATCCGTTTTCAGAAAATATT+GGG | - | chr3_4:35328962-35328981 | Msa0498550:CDS | 25.0% |
| !!! | AACCCAATATTTTCTGAAAA+CGG | + | chr3_4:35328967-35328986 | None:intergenic | 25.0% |
| !! | TTTAAGTTTATGACCTATGA+AGG | - | chr3_4:35329046-35329065 | Msa0498550:CDS | 25.0% |
| ! | AGCTTCATTAATTTAACTAC+AGG | - | chr3_4:35329279-35329298 | Msa0498550:CDS | 25.0% |
| ! | ATTAATTTAACTACAGGCTT+TGG | - | chr3_4:35329285-35329304 | Msa0498550:CDS | 25.0% |
| ! | TCCCAATTACAAAACAATTA+AGG | + | chr3_4:35329343-35329362 | None:intergenic | 25.0% |
| ! | TAGCCTATTCTAGATAATTT+CGG | + | chr3_4:35329605-35329624 | None:intergenic | 25.0% |
| !!! | TAGCATAATTGAGTTGATTA+TGG | - | chr3_4:35330136-35330155 | Msa0498550:intron | 25.0% |
| !! | AAGGAAGCATATGAAAAATA+GGG | + | chr3_4:35330218-35330237 | None:intergenic | 25.0% |
| ! | ACTGATAATACAGTCAAATA+AGG | + | chr3_4:35330423-35330442 | None:intergenic | 25.0% |
| ! | ATTTGACTGTATTATCAGTA+TGG | - | chr3_4:35330424-35330443 | Msa0498550:intron | 25.0% |
| ! | TTTGACTGTATTATCAGTAT+GGG | - | chr3_4:35330425-35330444 | Msa0498550:intron | 25.0% |
| ! | AGAACGAAAATGAAAAACTA+GGG | + | chr3_4:35330505-35330524 | None:intergenic | 25.0% |
| ! | AAGAACGAAAATGAAAAACT+AGG | + | chr3_4:35330506-35330525 | None:intergenic | 25.0% |
| !! | AGCTTGAAGAATCATAATTT+TGG | - | chr3_4:35331281-35331300 | Msa0498550:intron | 25.0% |
| !!! | AAGAATCATAATTTTGGTGT+TGG | - | chr3_4:35331287-35331306 | Msa0498550:intron | 25.0% |
| !!! | ATAATTTTGGTGTTGGAAAA+TGG | - | chr3_4:35331294-35331313 | Msa0498550:intron | 25.0% |
| !!! | TAATTTTGGTGTTGGAAAAT+GGG | - | chr3_4:35331295-35331314 | Msa0498550:intron | 25.0% |
| ! | ACATGACAACCATTATTATT+TGG | + | chr3_4:35331434-35331453 | None:intergenic | 25.0% |
| ! | ATTGTGTTTGAAATCTGAAG+AGG | + | chr3_4:35328413-35328432 | None:intergenic | 30.0% |
| ! | TCATGTTGTTGTTAAGGTTT+CGG | + | chr3_4:35328465-35328484 | None:intergenic | 30.0% |
| ! | ACAGAGTGTGAATTATCTTT+TGG | - | chr3_4:35328796-35328815 | Msa0498550:CDS | 30.0% |
| !! | GTGTGAATTATCTTTTGGTT+TGG | - | chr3_4:35328801-35328820 | Msa0498550:CDS | 30.0% |
| !!! | TTGGTTTGGTACTTTTTTGA+AGG | - | chr3_4:35328815-35328834 | Msa0498550:CDS | 30.0% |
| !!! | TGGTTTGGTACTTTTTTGAA+GGG | - | chr3_4:35328816-35328835 | Msa0498550:CDS | 30.0% |
| !!! | GTACTTTTTTGAAGGGTTTA+GGG | - | chr3_4:35328823-35328842 | Msa0498550:CDS | 30.0% |
| ! | GATCCGTTTTCAGAAAATAT+TGG | - | chr3_4:35328961-35328980 | Msa0498550:CDS | 30.0% |
| ! | ATATTGGGTTTTCAGATTTG+AGG | - | chr3_4:35328977-35328996 | Msa0498550:CDS | 30.0% |
| !! | GATTTGAGGTTTTTGATTGA+CGG | - | chr3_4:35328991-35329010 | Msa0498550:CDS | 30.0% |
| !!! | ACTATGGATTTTTAGGTTTG+AGG | - | chr3_4:35329015-35329034 | Msa0498550:CDS | 30.0% |
| !!! | TTTTTTTGTCTGTGTCATGT+TGG | - | chr3_4:35329149-35329168 | Msa0498550:CDS | 30.0% |
| TTGTAATTGGGATCGAAATT+TGG | - | chr3_4:35329351-35329370 | Msa0498550:CDS | 30.0% | |
| TGTAATTGGGATCGAAATTT+GGG | - | chr3_4:35329352-35329371 | Msa0498550:CDS | 30.0% | |
| AGCCTATTCTAGATAATTTC+GGG | + | chr3_4:35329604-35329623 | None:intergenic | 30.0% | |
| !!! | ACTGTCGTGAATTTTTTTCT+CGG | - | chr3_4:35329713-35329732 | Msa0498550:intron | 30.0% |
| CAGAGTCACATATATTACTA+AGG | + | chr3_4:35329754-35329773 | None:intergenic | 30.0% | |
| TTAGTAGTTAGACCAGAAAT+CGG | - | chr3_4:35329940-35329959 | Msa0498550:intron | 30.0% | |
| TTTAACATTGTCCGATAGTA+TGG | - | chr3_4:35330166-35330185 | Msa0498550:intron | 30.0% | |
| TAGTAGTAACACCATACTAT+CGG | + | chr3_4:35330180-35330199 | None:intergenic | 30.0% | |
| ! | AGGAAGCATATGAAAAATAG+GGG | + | chr3_4:35330217-35330236 | None:intergenic | 30.0% |
| ! | GAAGGAAGCATATGAAAAAT+AGG | + | chr3_4:35330219-35330238 | None:intergenic | 30.0% |
| TGCTGAAAATATTAGAGACA+TGG | + | chr3_4:35330476-35330495 | None:intergenic | 30.0% | |
| ! | TCTCTAATATTTTCAGCAAG+AGG | - | chr3_4:35330478-35330497 | Msa0498550:intron | 30.0% |
| ! | TATGAAGTTCTAGTAAAGGT+TGG | + | chr3_4:35330551-35330570 | None:intergenic | 30.0% |
| !!! | TGTCATTGCTTGTTTTATAC+AGG | - | chr3_4:35330626-35330645 | Msa0498550:intron | 30.0% |
| !! | TTTGTTAGCTTGTACTTGAA+GGG | + | chr3_4:35330726-35330745 | None:intergenic | 30.0% |
| !!! | TTTTGTTAGCTTGTACTTGA+AGG | + | chr3_4:35330727-35330746 | None:intergenic | 30.0% |
| !! | GTTGATAATATCAACAACGA+TGG | - | chr3_4:35331221-35331240 | Msa0498550:intron | 30.0% |
| GATAATAACAAGGAGAATGT+CGG | - | chr3_4:35331407-35331426 | Msa0498550:intron | 30.0% | |
| AATGTCGGTCCAAATAATAA+TGG | - | chr3_4:35331422-35331441 | Msa0498550:intron | 30.0% | |
| !! | AAAGGTGTTTGTTGTGAATA+AGG | - | chr3_4:35331460-35331479 | Msa0498550:intron | 30.0% |
| CAGCTTAAATCTTTGTATAC+AGG | - | chr3_4:35331581-35331600 | Msa0498550:CDS | 30.0% | |
| CTTAAATCTTTGTATACAGG+TGG | - | chr3_4:35331584-35331603 | Msa0498550:CDS | 30.0% | |
| ! | TAATTCTTCTCAAGTATTGC+AGG | - | chr3_4:35331619-35331638 | Msa0498550:CDS | 30.0% |
| ! | AATTCTTCTCAAGTATTGCA+GGG | - | chr3_4:35331620-35331639 | Msa0498550:CDS | 30.0% |
| GGAAAGGCTAGTAAATAATA+AGG | - | chr3_4:35331641-35331660 | Msa0498550:CDS | 30.0% | |
| ! | TCGTGTTCATGTTGTTGTTA+AGG | + | chr3_4:35328471-35328490 | None:intergenic | 35.0% |
| GAACATGGAAATCACTACAA+AGG | - | chr3_4:35328489-35328508 | Msa0498550:three_prime_UTR | 35.0% | |
| GGAAGAAGAAGTAAAAGAAC+TGG | - | chr3_4:35328510-35328529 | Msa0498550:three_prime_UTR | 35.0% | |
| AGAAGTAAAAGAACTGGAAG+AGG | - | chr3_4:35328516-35328535 | Msa0498550:three_prime_UTR | 35.0% | |
| AAAAGAACTGGAAGAGGAAA+AGG | - | chr3_4:35328522-35328541 | Msa0498550:exon | 35.0% | |
| !!! | GGTACTTTTTTGAAGGGTTT+AGG | - | chr3_4:35328822-35328841 | Msa0498550:CDS | 35.0% |
| !! | TTTTTGAAGGGTTTAGGGTT+TGG | - | chr3_4:35328828-35328847 | Msa0498550:CDS | 35.0% |
| !! | GTTTTTGATTGACGGAACTA+TGG | - | chr3_4:35328999-35329018 | Msa0498550:CDS | 35.0% |
| ! | TGACGGAACTATGGATTTTT+AGG | - | chr3_4:35329008-35329027 | Msa0498550:CDS | 35.0% |
| AGTTTATGACCTATGAAGGA+CGG | - | chr3_4:35329050-35329069 | Msa0498550:CDS | 35.0% | |
| GTAATTGGGATCGAAATTTG+GGG | - | chr3_4:35329353-35329372 | Msa0498550:CDS | 35.0% | |
| !! | AGCATTGGCCATTAATATCA+TGG | - | chr3_4:35329388-35329407 | Msa0498550:CDS | 35.0% |
| ! | GTCCCGAAATTATCTAGAAT+AGG | - | chr3_4:35329599-35329618 | Msa0498550:intron | 35.0% |
| TCCACTTAATTTAACACGGT+CGG | - | chr3_4:35329687-35329706 | Msa0498550:intron | 35.0% | |
| !!! | CTGTCGTGAATTTTTTTCTC+GGG | - | chr3_4:35329714-35329733 | Msa0498550:intron | 35.0% |
| TCTAATCAGCCAGTTAAAAC+AGG | + | chr3_4:35329799-35329818 | None:intergenic | 35.0% | |
| AAAATCAAACTCGTTTCCAC+AGG | + | chr3_4:35330001-35330020 | None:intergenic | 35.0% | |
| !! | CTGGTTTCATTGATTTAACC+AGG | + | chr3_4:35330024-35330043 | None:intergenic | 35.0% |
| ! | TAATTGAAAGCTGGTTCAAC+TGG | + | chr3_4:35330043-35330062 | None:intergenic | 35.0% |
| ATATGAAAAATAGGGGACTC+TGG | + | chr3_4:35330210-35330229 | None:intergenic | 35.0% | |
| AAGTGTGAAGGAAACATAGA+AGG | - | chr3_4:35330309-35330328 | Msa0498550:intron | 35.0% | |
| ! | ATACCAATTTTGTTGCATGC+AGG | - | chr3_4:35330580-35330599 | Msa0498550:intron | 35.0% |
| ATGACAGTTCTCTTGTAGTT+TGG | + | chr3_4:35330612-35330631 | None:intergenic | 35.0% | |
| ! | AAAATGCTCTAGCTCCAAAT+TGG | - | chr3_4:35330694-35330713 | Msa0498550:intron | 35.0% |
| ACACTTATAGACGAAAGAGA+CGG | - | chr3_4:35330747-35330766 | Msa0498550:intron | 35.0% | |
| ! | GAAAGAGACGGTTCAATTTT+CGG | - | chr3_4:35330759-35330778 | Msa0498550:intron | 35.0% |
| TGGTCTGATCAGTACTAAAT+CGG | + | chr3_4:35330820-35330839 | None:intergenic | 35.0% | |
| ! | CTTAGTGCTAAAACAGCTTT+TGG | + | chr3_4:35330852-35330871 | None:intergenic | 35.0% |
| !!! | AAAGCTGTTTTAGCACTAAG+AGG | - | chr3_4:35330852-35330871 | Msa0498550:intron | 35.0% |
| AAAGCCTAAAAGGTTCTGTA+AGG | - | chr3_4:35330940-35330959 | Msa0498550:intron | 35.0% | |
| ! | TGAACCTTACAGAACCTTTT+AGG | + | chr3_4:35330947-35330966 | None:intergenic | 35.0% |
| AAATCAGTGTCTGATGCATA+TGG | - | chr3_4:35330987-35331006 | Msa0498550:intron | 35.0% | |
| GGAAAATCGTTAGCAAAAGA+AGG | - | chr3_4:35331068-35331087 | Msa0498550:intron | 35.0% | |
| ATAGCAATTGAAACAGAAGG+CGG | + | chr3_4:35331122-35331141 | None:intergenic | 35.0% | |
| CTCATAGCAATTGAAACAGA+AGG | + | chr3_4:35331125-35331144 | None:intergenic | 35.0% | |
| GCTATGAGTCTAAGAAACAT+TGG | - | chr3_4:35331137-35331156 | Msa0498550:intron | 35.0% | |
| GAAACAACAACAAGAAGAGT+TGG | - | chr3_4:35331243-35331262 | Msa0498550:intron | 35.0% | |
| TTCTTCAAGCTAGTTAACCA+TGG | + | chr3_4:35331272-35331291 | None:intergenic | 35.0% | |
| CTATTGTTCACATAGAGATG+AGG | + | chr3_4:35331323-35331342 | None:intergenic | 35.0% | |
| TCTTTCTCATTGGATCTATC+AGG | + | chr3_4:35331377-35331396 | None:intergenic | 35.0% | |
| TGATAGATCCAATGAGAAAG+AGG | - | chr3_4:35331376-35331395 | Msa0498550:intron | 35.0% | |
| AAGCTCATGGAATTGAACAA+TGG | - | chr3_4:35331501-35331520 | Msa0498550:intron | 35.0% | |
| TAATAAGGTCTTGCTCTCAT+TGG | - | chr3_4:35331656-35331675 | Msa0498550:CDS | 35.0% | |
| AGGTATCAACACAAGCAAAT+AGG | + | chr3_4:35331705-35331724 | None:intergenic | 35.0% | |
| GAAATCTGAAGAGGAAAGAG+CGG | + | chr3_4:35328404-35328423 | None:intergenic | 40.0% | |
| CAACAACATGAACACGAACA+TGG | - | chr3_4:35328474-35328493 | Msa0498550:three_prime_UTR | 40.0% | |
| GTTGTTGTGGTTGAAAAGCA+AGG | - | chr3_4:35328544-35328563 | Msa0498550:CDS | 40.0% | |
| GTTGAAAAGCAAGGAGAAGA+AGG | - | chr3_4:35328553-35328572 | Msa0498550:CDS | 40.0% | |
| !! | GAGATCTCATTAGTTCTAGC+TGG | - | chr3_4:35328641-35328660 | Msa0498550:CDS | 40.0% |
| GAAATTTGGGGATCCTGATT+TGG | - | chr3_4:35329365-35329384 | Msa0498550:CDS | 40.0% | |
| AAAATTGTCGCCTCTGACTT+TGG | - | chr3_4:35329465-35329484 | Msa0498550:CDS | 40.0% | |
| ATAGGCTATCACCGTTAGAT+TGG | - | chr3_4:35329617-35329636 | Msa0498550:intron | 40.0% | |
| TGTGGCAGTTTCCAATCTAA+CGG | + | chr3_4:35329631-35329650 | None:intergenic | 40.0% | |
| TTGGAAACTGCCACAATACA+TGG | - | chr3_4:35329636-35329655 | Msa0498550:intron | 40.0% | |
| TGGAAACTGCCACAATACAT+GGG | - | chr3_4:35329637-35329656 | Msa0498550:intron | 40.0% | |
| GGGCTCCACTTAATTTAACA+CGG | - | chr3_4:35329683-35329702 | Msa0498550:intron | 40.0% | |
| CCACTTAATTTAACACGGTC+GGG | - | chr3_4:35329688-35329707 | Msa0498550:intron | 40.0% | |
| GCTGATTAGACCTATGAACA+CGG | - | chr3_4:35329809-35329828 | Msa0498550:intron | 40.0% | |
| CTGGTCTAACTACTAATCCT+AGG | + | chr3_4:35329936-35329955 | None:intergenic | 40.0% | |
| AGATGCATTTCAGAACGACA+TGG | + | chr3_4:35329975-35329994 | None:intergenic | 40.0% | |
| !! | GGAAACGAGTTTGATTTTCC+TGG | - | chr3_4:35330003-35330022 | Msa0498550:intron | 40.0% |
| ! | TTATTGACTGAACGAGTCAC+TGG | + | chr3_4:35330112-35330131 | None:intergenic | 40.0% |
| CAGTTGCGTTAGTATTGTGT+TGG | - | chr3_4:35330248-35330267 | Msa0498550:intron | 40.0% | |
| ! | CGTTAGTATTGTGTTGGTGT+CGG | - | chr3_4:35330254-35330273 | Msa0498550:intron | 40.0% |
| ! | GAAGTTCTAGTAAAGGTTGG+AGG | + | chr3_4:35330548-35330567 | None:intergenic | 40.0% |
| CTTCCTGCATGCAACAAAAT+TGG | + | chr3_4:35330586-35330605 | None:intergenic | 40.0% | |
| ! | CAATTTTGTTGCATGCAGGA+AGG | - | chr3_4:35330584-35330603 | Msa0498550:intron | 40.0% |
| !! | TTTGGAGCTAGAGCATTTTC+TGG | + | chr3_4:35330693-35330712 | None:intergenic | 40.0% |
| TTGAAGGGAATCCACCAATT+TGG | + | chr3_4:35330711-35330730 | None:intergenic | 40.0% | |
| !! | TTTTCGGTGCAATACTCGAA+TGG | - | chr3_4:35330775-35330794 | Msa0498550:intron | 40.0% |
| ! | TTTCGGTGCAATACTCGAAT+GGG | - | chr3_4:35330776-35330795 | Msa0498550:intron | 40.0% |
| !! | TTAGTACTGATCAGACCAAG+TGG | - | chr3_4:35330822-35330841 | Msa0498550:intron | 40.0% |
| AGTAGCAATGTTTGTGTAGC+AGG | - | chr3_4:35331011-35331030 | Msa0498550:intron | 40.0% | |
| TGTGTAGCAGGACATTCATT+AGG | - | chr3_4:35331023-35331042 | Msa0498550:intron | 40.0% | |
| TAGCAATTGAAACAGAAGGC+GGG | + | chr3_4:35331121-35331140 | None:intergenic | 40.0% | |
| GATTCTCTTCCAAGCTAACT+CGG | + | chr3_4:35331171-35331190 | None:intergenic | 40.0% | |
| GGATGCTGCTGATAATAACA+AGG | - | chr3_4:35331397-35331416 | Msa0498550:intron | 40.0% | |
| CAGAAGTTTCATGAAGCTCA+TGG | - | chr3_4:35331488-35331507 | Msa0498550:intron | 40.0% | |
| CTCATGGAATTGAACAATGG+TGG | - | chr3_4:35331504-35331523 | Msa0498550:intron | 40.0% | |
| TCTTTGTATACAGGTGGTAG+TGG | - | chr3_4:35331590-35331609 | Msa0498550:CDS | 40.0% | |
| ! | TTCTCAAGTATTGCAGGGAA+AGG | - | chr3_4:35331625-35331644 | Msa0498550:CDS | 40.0% |
| GGAAGAGGAAAAGGTTGTTG+TGG | - | chr3_4:35328531-35328550 | Msa0498550:exon | 45.0% | |
| CCAGACACGTGAAATGCATA+AGG | + | chr3_4:35328592-35328611 | None:intergenic | 45.0% | |
| CCTTATGCATTTCACGTGTC+TGG | - | chr3_4:35328589-35328608 | Msa0498550:CDS | 45.0% | |
| ACACGAACACTCCTCAGATT+AGG | + | chr3_4:35329186-35329205 | None:intergenic | 45.0% | |
| AATGGCCAATGCTCCAAATC+AGG | + | chr3_4:35329381-35329400 | None:intergenic | 45.0% | |
| CAATTGAGAGCCAAAGTCAG+AGG | + | chr3_4:35329478-35329497 | None:intergenic | 45.0% | |
| AAACTGCCACAATACATGGG+TGG | - | chr3_4:35329640-35329659 | Msa0498550:intron | 45.0% | |
| AACTGCCACAATACATGGGT+GGG | - | chr3_4:35329641-35329660 | Msa0498550:intron | 45.0% | |
| CCCGACCGTGTTAAATTAAG+TGG | + | chr3_4:35329691-35329710 | None:intergenic | 45.0% | |
| ! | TGGTTTGTGTCCGTGTTCAT+AGG | + | chr3_4:35329822-35329841 | None:intergenic | 45.0% |
| ACGATACTAACACGTCGACA+TGG | - | chr3_4:35329845-35329864 | Msa0498550:intron | 45.0% | |
| TTGTCGAGTCAATGCTACCT+AGG | - | chr3_4:35329916-35329935 | Msa0498550:intron | 45.0% | |
| CTGAAATGCATCTGAACCTG+TGG | - | chr3_4:35329982-35330001 | Msa0498550:intron | 45.0% | |
| ACGCAACTGCACAAAGTAGA+AGG | + | chr3_4:35330237-35330256 | None:intergenic | 45.0% | |
| ! | CGCTTCAATCTGAAGTGTGA+AGG | - | chr3_4:35330297-35330316 | Msa0498550:intron | 45.0% |
| AGGTTGGAGGATTCTCAATC+AGG | + | chr3_4:35330535-35330554 | None:intergenic | 45.0% | |
| ! | ATGCTCTAGCTCCAAATTGG+TGG | - | chr3_4:35330697-35330716 | Msa0498550:intron | 45.0% |
| GAGACATCCAAGATGACCTT+CGG | - | chr3_4:35330904-35330923 | Msa0498550:intron | 45.0% | |
| !!! | GCTGGTTTTGCACTTCAAGT+TGG | - | chr3_4:35331047-35331066 | Msa0498550:intron | 45.0% |
| GAGAAAAAGCCGAGTTAGCT+TGG | - | chr3_4:35331159-35331178 | Msa0498550:intron | 45.0% | |
| ACAAGAAGAGTTGGATGCCA+TGG | - | chr3_4:35331252-35331271 | Msa0498550:intron | 45.0% | |
| AGCAGCATCCTCTTTCTCAT+TGG | + | chr3_4:35331387-35331406 | None:intergenic | 45.0% | |
| TGGTTGTCATGTTGCTGCAA+AGG | - | chr3_4:35331442-35331461 | Msa0498550:intron | 45.0% | |
| !! | TATACAGGTGGTAGTGGTAG+TGG | - | chr3_4:35331596-35331615 | Msa0498550:CDS | 45.0% |
| AGAGGAAAGAGCGGAAGTGA+AGG | + | chr3_4:35328395-35328414 | None:intergenic | 50.0% | |
| CATTTCACGTGTCTGGTCCA+AGG | - | chr3_4:35328596-35328615 | Msa0498550:CDS | 50.0% | |
| CGTGTCTGGTCCAAGGAATT+TGG | - | chr3_4:35328603-35328622 | Msa0498550:CDS | 50.0% | |
| CCTATGAAGGACGGATACAC+CGG | - | chr3_4:35329059-35329078 | Msa0498550:CDS | 50.0% | |
| TGTCAGACACGCCTAATCTG+AGG | - | chr3_4:35329172-35329191 | Msa0498550:CDS | 50.0% | |
| !! | GGGATCCTGATTTGGAGCAT+TGG | - | chr3_4:35329373-35329392 | Msa0498550:CDS | 50.0% |
| ! | GCGGGCATACAAAGTGGATT+GGG | - | chr3_4:35329663-35329682 | Msa0498550:intron | 50.0% |
| CGACGTGTTAGTATCGTGTC+TGG | + | chr3_4:35329842-35329861 | None:intergenic | 50.0% | |
| ! | TGGTGACTCTGACCGATTTC+TGG | + | chr3_4:35329955-35329974 | None:intergenic | 50.0% |
| GAAAAATAGGGGACTCTGGC+TGG | + | chr3_4:35330206-35330225 | None:intergenic | 50.0% | |
| !! | ACAGCTTTTGGTGCACCACT+TGG | + | chr3_4:35330840-35330859 | None:intergenic | 50.0% |
| GGATGTCTCTTCGCATTGTG+TGG | + | chr3_4:35330893-35330912 | None:intergenic | 50.0% | |
| ! | CTTTTAGGCTTTCCCAAGCG+AGG | + | chr3_4:35330932-35330951 | None:intergenic | 50.0% |
| CTCGCTTGGGAAAGCCTAAA+AGG | - | chr3_4:35330930-35330949 | Msa0498550:intron | 50.0% | |
| GCAGGACATTCATTAGGAGC+TGG | - | chr3_4:35331029-35331048 | Msa0498550:intron | 50.0% | |
| ATGCTTCCTTCAAGCAGCGA+AGG | - | chr3_4:35331197-35331216 | Msa0498550:intron | 50.0% | |
| TCAACTCCTTCGCTGCTTGA+AGG | + | chr3_4:35331206-35331225 | None:intergenic | 50.0% | |
| CCGGTGTATCCGTCCTTCAT+AGG | + | chr3_4:35329062-35329081 | None:intergenic | 55.0% | |
| GTTTGTGTCCGTGTCGTGTC+CGG | + | chr3_4:35329081-35329100 | None:intergenic | 55.0% | |
| TGCCACAATACATGGGTGGG+CGG | - | chr3_4:35329644-35329663 | Msa0498550:intron | 55.0% | |
| GGCGGGCATACAAAGTGGAT+TGG | - | chr3_4:35329662-35329681 | Msa0498550:intron | 55.0% | |
| CGAGGAACCGAAGGTCATCT+TGG | + | chr3_4:35330914-35330933 | None:intergenic | 55.0% | |
| ATGACCTTCGGTTCCTCGCT+TGG | - | chr3_4:35330916-35330935 | Msa0498550:intron | 55.0% | |
| TGACCTTCGGTTCCTCGCTT+GGG | - | chr3_4:35330917-35330936 | Msa0498550:intron | 55.0% | |
| TTTCCCAAGCGAGGAACCGA+AGG | + | chr3_4:35330923-35330942 | None:intergenic | 55.0% | |
| CGGATACACCGGACACGACA+CGG | - | chr3_4:35329070-35329089 | Msa0498550:CDS | 60.0% | |
| GCCACAATACATGGGTGGGC+GGG | - | chr3_4:35329645-35329664 | Msa0498550:intron | 60.0% | |
| GCCCGCCCACCCATGTATTG+TGG | + | chr3_4:35329649-35329668 | None:intergenic | 65.0% | |
| GGGTGGGCGGGCATACAAAG+TGG | - | chr3_4:35329657-35329676 | Msa0498550:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 35328365 | 35331831 | 35328365 | ID=Msa0498550;Name=Msa0498550 |
| chr3_4 | mRNA | 35328365 | 35331831 | 35328365 | ID=Msa0498550-mRNA-1;Parent=Msa0498550;Name=Msa0498550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|173|412 |
| chr3_4 | exon | 35328365 | 35329594 | 35328365 | ID=Msa0498550-mRNA-1:exon:7388;Parent=Msa0498550-mRNA-1 |
| chr3_4 | exon | 35331534 | 35331831 | 35331534 | ID=Msa0498550-mRNA-1:exon:7387;Parent=Msa0498550-mRNA-1 |
| chr3_4 | five_prime_UTR | 35331716 | 35331831 | 35331716 | ID=Msa0498550-mRNA-1:five_prime_utr;Parent=Msa0498550-mRNA-1 |
| chr3_4 | CDS | 35331534 | 35331715 | 35331534 | ID=Msa0498550-mRNA-1:cds;Parent=Msa0498550-mRNA-1 |
| chr3_4 | CDS | 35328538 | 35329594 | 35328538 | ID=Msa0498550-mRNA-1:cds;Parent=Msa0498550-mRNA-1 |
| chr3_4 | three_prime_UTR | 35328365 | 35328537 | 35328365 | ID=Msa0498550-mRNA-1:three_prime_utr;Parent=Msa0498550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
