AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0559100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559100 MtrunA17_Chr4g0049011 97.800 591 13 0 48 638 43 633 0.0 1194
Msa0559100 MtrunA17_Chr2g0280421 65.597 561 172 5 76 627 222 770 0.0 725
Msa0559100 MtrunA17_Chr2g0280421 28.938 273 123 8 1 210 1 265 1.87e-13 73.9
Msa0559100 MtrunA17_Chr2g0319271 60.401 548 197 4 99 637 214 750 0.0 640
Msa0559100 MtrunA17_Chr4g0042061 60.401 548 196 5 99 637 247 782 0.0 639
Msa0559100 MtrunA17_Chr7g0272871 42.782 381 188 8 256 626 94 454 1.65e-84 280
Msa0559100 MtrunA17_Chr2g0312631 43.207 368 195 4 259 626 359 712 8.53e-84 284
Msa0559100 MtrunA17_Chr7g0271961 42.779 367 177 7 272 630 389 730 1.02e-82 280
Msa0559100 MtrunA17_Chr1g0191851 40.741 378 200 6 256 626 114 474 1.05e-82 276
Msa0559100 MtrunA17_Chr1g0192481 42.276 369 182 9 272 630 46 393 9.46e-82 269
Msa0559100 MtrunA17_Chr5g0411971 36.492 496 259 10 168 626 248 724 5.07e-81 276
Msa0559100 MtrunA17_Chr5g0421591 38.596 456 238 9 193 625 262 698 8.80e-81 273
Msa0559100 MtrunA17_Chr5g0421521 42.328 378 197 6 250 625 340 698 8.82e-79 269
Msa0559100 MtrunA17_Chr5g0407791 36.902 439 239 9 193 623 802 1210 9.48e-79 272
Msa0559100 MtrunA17_Chr1g0195111 40.599 367 190 7 272 630 384 730 1.57e-78 269
Msa0559100 MtrunA17_Chr8g0369881 36.404 456 247 11 189 623 763 1196 2.54e-78 271
Msa0559100 MtrunA17_Chr3g0102921 41.713 362 198 8 272 626 426 781 9.99e-75 259
Msa0559100 MtrunA17_Chr7g0257301 38.318 428 229 13 227 626 326 746 2.87e-74 258
Msa0559100 MtrunA17_Chr5g0447041 38.718 390 199 7 272 626 422 806 1.43e-73 256
Msa0559100 MtrunA17_Chr1g0191181 36.554 383 223 6 245 624 49 414 6.64e-67 230
Msa0559100 MtrunA17_Chr2g0327581 36.915 363 207 9 275 624 39 392 1.10e-56 207
Msa0559100 MtrunA17_Chr3g0122121 37.978 366 174 11 285 624 99 437 4.08e-56 206
Msa0559100 MtrunA17_Chr1g0178411 37.778 360 194 11 284 624 13 361 2.11e-55 203
Msa0559100 MtrunA17_Chr7g0266631 37.500 360 195 11 284 624 9 357 5.81e-55 202
Msa0559100 MtrunA17_Chr8g0377731 37.368 380 185 11 270 624 40 391 1.27e-54 201
Msa0559100 MtrunA17_Chr4g0045381 36.957 368 176 10 284 624 193 531 2.38e-53 198
Msa0559100 MtrunA17_Chr1g0182151 36.932 352 204 8 284 624 54 398 6.09e-53 196
Msa0559100 MtrunA17_Chr2g0322291 40.379 317 148 8 329 624 130 426 3.24e-52 194
Msa0559100 MtrunA17_Chr4g0069141 35.000 380 185 10 275 624 144 491 7.36e-51 191
Msa0559100 MtrunA17_Chr5g0427481 35.530 349 208 7 285 624 18 358 1.04e-50 190
Msa0559100 MtrunA17_Chr8g0367581 35.833 360 204 8 271 629 133 466 3.06e-50 188
Msa0559100 MtrunA17_Chr3g0134191 34.771 371 196 10 285 624 9 364 3.48e-50 188
Msa0559100 MtrunA17_Chr1g0193221 35.530 349 183 9 285 620 4 323 1.42e-48 183
Msa0559100 MtrunA17_Chr1g0153061 35.054 368 199 12 285 624 9 364 2.49e-48 182
Msa0559100 MtrunA17_Chr4g0053211 34.409 372 202 12 284 624 12 372 7.44e-48 181
Msa0559100 MtrunA17_Chr3g0132921 34.270 356 204 9 284 624 9 349 1.57e-47 175
Msa0559100 MtrunA17_Chr2g0307481 35.227 352 193 9 285 624 69 397 5.63e-47 175
Msa0559100 MtrunA17_Chr1g0152231 35.065 308 167 6 329 623 46 333 3.01e-45 172
Msa0559100 MtrunA17_Chr4g0035661 35.447 347 192 11 284 625 89 408 6.12e-44 169
Msa0559100 MtrunA17_Chr4g0062291 35.376 359 192 10 285 627 124 458 2.11e-43 166
Msa0559100 MtrunA17_Chr3g0145071 35.817 349 188 12 284 625 99 418 2.75e-43 167
Msa0559100 MtrunA17_Chr8g0386891 54.676 139 63 0 488 626 21 159 7.82e-42 156
Msa0559100 MtrunA17_Chr7g0269681 45.506 178 97 0 453 630 23 200 1.79e-41 157
Msa0559100 MtrunA17_Chr6g0483701 34.006 347 196 7 285 623 31 352 1.08e-40 159
Msa0559100 MtrunA17_Chr6g0484501 48.000 175 91 0 453 627 16 190 1.44e-40 148
Msa0559100 MtrunA17_Chr4g0070001 32.308 390 207 13 269 634 125 481 5.59e-40 157
Msa0559100 MtrunA17_Chr7g0238581 32.378 349 195 10 285 619 26 347 1.91e-39 154
Msa0559100 MtrunA17_Chr7g0258991 33.333 351 200 10 282 625 71 394 2.85e-39 155
Msa0559100 MtrunA17_Chr3g0142261 33.699 365 183 11 285 623 20 351 3.56e-39 155
Msa0559100 MtrunA17_Chr5g0398521 30.133 375 210 10 281 625 54 406 5.79e-39 154
Msa0559100 MtrunA17_Chr5g0445211 32.884 371 199 13 277 624 67 410 8.93e-39 154
Msa0559100 MtrunA17_Chr3g0101021 32.808 317 177 8 329 624 108 409 1.18e-38 153
Msa0559100 MtrunA17_Chr4g0036001 31.044 364 215 8 264 617 3 340 6.35e-38 150
Msa0559100 MtrunA17_Chr6g0485471 34.462 325 180 10 318 637 154 450 5.46e-37 147
Msa0559100 MtrunA17_Chr8g0390991 51.923 156 75 0 471 626 4 159 1.40e-36 144
Msa0559100 MtrunA17_Chr8g0372171 32.113 355 184 11 285 618 20 338 5.16e-36 145
Msa0559100 MtrunA17_Chr7g0245931 30.352 369 210 8 281 624 49 395 5.89e-36 144
Msa0559100 MtrunA17_Chr5g0405181 31.624 351 191 9 285 618 21 339 1.09e-35 144
Msa0559100 MtrunA17_Chr2g0331761 31.847 314 183 6 318 626 224 511 7.61e-35 140
Msa0559100 MtrunA17_Chr8g0386901 42.289 201 100 7 240 432 440 632 2.87e-32 132
Msa0559100 MtrunA17_Chr8g0390981 38.532 218 125 6 220 434 454 665 3.98e-32 132
Msa0559100 MtrunA17_Chr1g0187411 31.856 361 211 12 285 628 131 473 6.36e-32 132
Msa0559100 MtrunA17_Chr2g0295881 31.481 324 177 8 318 623 237 533 4.57e-31 129
Msa0559100 MtrunA17_Chr6g0484511 40.936 171 85 5 272 434 277 439 2.92e-30 125
Msa0559100 MtrunA17_Chr4g0067421 30.031 323 181 7 318 623 245 539 4.35e-30 126
Msa0559100 MtrunA17_Chr7g0269691 40.854 164 90 5 272 432 388 547 1.43e-28 120
Msa0559100 MtrunA17_Chr3g0142841 29.167 312 172 11 331 625 145 424 1.95e-20 96.3
Msa0559100 MtrunA17_Chr6g0470541 26.235 324 205 10 285 602 6 301 1.69e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0559100 AT4G05190.1 63.363 565 190 4 76 627 213 773 0.0 702
Msa0559100 AT4G05190.2 63.604 566 187 5 76 627 200 760 0.0 701
Msa0559100 AT4G21270.1 63.345 562 195 3 76 627 216 776 0.0 699
Msa0559100 AT4G27180.1 59.415 547 194 7 99 632 206 737 0.0 621
Msa0559100 AT4G27180.2 59.415 547 194 7 99 632 206 737 0.0 621
Msa0559100 AT5G54670.1 58.000 550 201 8 99 638 215 744 0.0 609
Msa0559100 AT5G54670.2 58.000 550 201 8 99 638 215 744 0.0 609
Msa0559100 AT5G54670.3 58.000 550 201 8 99 638 155 684 0.0 608
Msa0559100 AT1G72250.1 46.175 366 180 5 263 626 470 820 3.55e-91 306
Msa0559100 AT1G72250.2 46.175 366 180 5 263 626 479 829 4.29e-91 306
Msa0559100 AT1G72250.4 46.175 366 180 5 263 626 490 840 5.11e-91 306
Msa0559100 AT1G72250.3 46.175 366 180 5 263 626 491 841 5.16e-91 306
Msa0559100 AT1G73860.2 35.714 602 281 15 70 626 218 758 3.36e-87 292
Msa0559100 AT1G73860.1 35.714 602 281 15 70 626 301 841 7.10e-87 292
Msa0559100 AT5G27550.2 43.264 386 196 6 245 626 93 459 3.65e-86 285
Msa0559100 AT5G27550.1 43.264 386 196 6 245 626 93 459 3.65e-86 285
Msa0559100 AT2G22610.2 42.440 377 200 3 250 626 383 742 3.16e-85 288
Msa0559100 AT2G22610.1 42.440 377 200 3 250 626 383 742 4.35e-85 288
Msa0559100 AT2G22610.3 42.440 377 200 3 250 626 384 743 4.53e-85 288
Msa0559100 AT1G18410.5 45.055 364 163 8 272 626 467 802 3.46e-83 282
Msa0559100 AT1G18410.3 44.687 367 168 8 272 626 477 820 1.09e-82 281
Msa0559100 AT1G18410.2 44.687 367 168 8 272 626 477 820 1.09e-82 281
Msa0559100 AT1G18410.1 45.055 364 163 8 272 626 620 955 1.09e-81 280
Msa0559100 AT1G18410.4 44.687 367 168 8 272 626 620 963 2.34e-81 279
Msa0559100 AT5G41310.1 42.175 377 171 7 258 626 398 735 6.81e-81 275
Msa0559100 AT1G63640.2 42.199 391 199 8 240 626 429 796 7.12e-81 276
Msa0559100 AT1G63640.5 42.132 394 202 8 240 626 419 793 7.39e-81 276
Msa0559100 AT1G63640.3 42.132 394 202 8 240 626 429 803 8.29e-81 276
Msa0559100 AT1G63640.1 42.132 394 202 8 240 626 429 803 9.44e-81 276
Msa0559100 AT1G63640.4 42.132 394 202 8 240 626 429 803 9.44e-81 276
Msa0559100 AT1G09170.4 38.498 426 241 8 210 630 358 767 1.20e-79 270
Msa0559100 AT1G09170.3 38.498 426 241 8 210 630 358 767 1.37e-79 269
Msa0559100 AT1G09170.7 38.498 426 241 8 210 630 358 767 1.37e-79 269
Msa0559100 AT2G47500.2 41.713 362 191 5 272 630 387 731 1.58e-79 271
Msa0559100 AT1G09170.2 38.498 426 241 8 210 630 358 767 2.98e-79 270
Msa0559100 AT2G47500.1 41.713 362 191 5 272 630 387 731 3.68e-79 271
Msa0559100 AT1G09170.5 38.498 426 241 8 210 630 358 767 1.56e-78 270
Msa0559100 AT5G27000.1 41.689 367 186 7 272 630 382 728 2.54e-77 266
Msa0559100 AT5G65930.1 37.071 437 249 8 189 623 796 1208 3.09e-77 268
Msa0559100 AT5G65930.2 37.071 437 249 8 189 623 797 1209 3.11e-77 268
Msa0559100 AT5G65930.3 36.697 436 252 7 189 623 803 1215 4.27e-77 268
Msa0559100 AT3G44730.1 40.166 361 189 7 274 626 367 708 1.92e-76 265
Msa0559100 AT3G44730.4 40.166 361 189 7 274 626 367 708 1.92e-76 265
Msa0559100 AT3G44730.2 40.166 361 189 7 274 626 412 753 2.35e-76 265
Msa0559100 AT3G44730.3 40.166 361 189 7 274 626 412 753 2.35e-76 265
Msa0559100 AT1G55550.1 38.542 384 203 7 250 626 57 414 6.89e-76 259
Msa0559100 AT3G10310.2 39.753 405 208 11 237 626 309 692 6.92e-75 259
Msa0559100 AT3G10310.1 39.753 405 208 11 237 626 309 692 7.10e-75 258
Msa0559100 AT5G27950.1 37.135 377 217 7 250 623 45 404 1.37e-67 233
Msa0559100 AT1G09170.1 35.765 425 218 8 210 630 358 731 2.88e-67 238
Msa0559100 AT1G09170.6 37.500 384 219 8 210 588 358 725 1.25e-65 229
Msa0559100 AT1G09170.8 37.500 384 219 8 210 588 358 725 1.25e-65 229
Msa0559100 AT3G45850.2 37.222 360 191 9 284 624 55 398 1.08e-56 207
Msa0559100 AT3G45850.1 37.222 360 191 9 284 624 55 398 1.08e-56 207
Msa0559100 AT2G37420.1 37.288 354 199 9 284 624 48 391 1.77e-55 204
Msa0559100 AT2G37420.2 37.288 354 199 9 284 624 48 391 1.77e-55 204
Msa0559100 AT2G36200.1 38.333 360 192 11 284 624 12 360 5.43e-55 202
Msa0559100 AT2G36200.2 38.333 360 192 11 284 624 12 360 9.75e-55 202
Msa0559100 AT2G28620.3 37.360 356 196 10 284 624 50 393 1.36e-54 201
Msa0559100 AT2G28620.2 37.360 356 196 10 284 624 50 393 1.36e-54 201
Msa0559100 AT2G28620.1 37.360 356 196 10 284 624 50 393 1.46e-54 201
Msa0559100 AT3G19050.1 37.017 362 184 10 284 624 193 531 2.49e-52 196
Msa0559100 AT3G44050.1 40.220 363 171 13 284 624 93 431 3.18e-52 195
Msa0559100 AT4G14150.1 38.199 322 157 8 327 624 124 427 9.71e-51 190
Msa0559100 AT3G23670.2 37.461 323 160 8 326 624 128 432 1.87e-49 186
Msa0559100 AT3G23670.1 37.152 323 161 7 326 624 128 432 2.98e-49 186
Msa0559100 AT3G17360.1 35.422 367 183 9 284 624 168 506 1.20e-48 184
Msa0559100 AT3G17360.3 35.422 367 183 9 284 624 168 506 1.22e-48 184
Msa0559100 AT3G17360.2 35.422 367 183 9 284 624 168 506 1.23e-48 184
Msa0559100 AT3G50240.2 34.605 367 202 10 285 624 26 381 2.56e-48 182
Msa0559100 AT3G50240.1 34.605 367 202 10 285 624 26 381 2.84e-48 182
Msa0559100 AT3G50240.4 34.605 367 202 10 285 624 26 381 2.92e-48 182
Msa0559100 AT5G65460.6 30.254 433 258 8 196 620 53 449 3.61e-48 182
Msa0559100 AT5G65460.4 30.088 452 270 9 177 620 36 449 3.61e-48 182
Msa0559100 AT5G65460.1 30.088 452 270 9 177 620 36 449 3.68e-48 182
Msa0559100 AT5G65460.2 30.254 433 258 8 196 620 53 449 3.72e-48 182
Msa0559100 AT3G10180.2 35.244 349 185 7 285 620 4 324 5.45e-48 182
Msa0559100 AT3G10180.1 35.244 349 185 7 285 620 4 324 7.10e-48 182
Msa0559100 AT5G60930.1 37.618 319 174 10 329 624 45 361 2.55e-47 180
Msa0559100 AT5G60930.3 37.618 319 174 10 329 624 45 361 3.16e-47 180
Msa0559100 AT5G60930.2 37.618 319 174 10 329 624 45 361 3.87e-47 179
Msa0559100 AT5G65460.3 29.605 456 274 9 177 620 36 456 8.96e-47 178
Msa0559100 AT4G39050.1 35.616 365 199 12 268 625 82 417 2.02e-46 177
Msa0559100 AT2G21380.2 36.389 360 185 14 277 625 97 423 3.39e-46 176
Msa0559100 AT2G21380.1 36.389 360 185 14 277 625 97 423 3.39e-46 176
Msa0559100 AT5G47820.2 33.244 373 205 10 284 624 11 371 3.59e-45 173
Msa0559100 AT5G47820.1 33.244 373 205 10 284 624 11 371 3.59e-45 173
Msa0559100 AT1G59540.1 36.000 300 165 7 331 623 46 325 4.22e-45 172
Msa0559100 AT5G10470.1 29.929 421 253 8 214 620 61 453 1.02e-43 169
Msa0559100 AT5G10470.2 29.929 421 253 8 214 620 61 453 1.14e-43 169
Msa0559100 AT5G06670.2 33.616 354 201 11 279 625 61 387 2.39e-43 167
Msa0559100 AT5G06670.3 33.616 354 201 11 279 625 61 387 2.39e-43 167
Msa0559100 AT5G06670.5 33.616 354 201 11 279 625 61 387 3.28e-43 166
Msa0559100 AT5G06670.8 33.616 354 201 11 279 625 61 387 3.49e-43 166
Msa0559100 AT5G06670.4 33.616 354 201 11 279 625 61 387 3.49e-43 166
Msa0559100 AT5G06670.7 33.616 354 201 11 279 625 61 387 3.49e-43 166
Msa0559100 AT1G18550.1 36.213 301 165 7 329 624 204 482 5.36e-43 165
Msa0559100 AT1G21730.1 36.080 352 191 12 281 625 72 396 1.34e-42 165
Msa0559100 AT3G49650.1 34.402 343 198 7 290 627 29 349 1.77e-42 164
Msa0559100 AT5G06670.6 33.058 363 200 12 279 625 61 396 8.58e-42 163
Msa0559100 AT5G06670.1 33.058 363 200 12 279 625 61 396 8.58e-42 163
Msa0559100 AT3G63480.2 33.520 358 196 12 284 624 3 335 1.04e-41 157
Msa0559100 AT3G12020.4 33.705 359 204 10 274 625 59 390 6.02e-41 160
Msa0559100 AT3G12020.1 33.705 359 204 10 274 625 59 390 6.02e-41 160
Msa0559100 AT3G12020.3 33.705 359 204 10 274 625 59 390 1.27e-40 159
Msa0559100 AT3G12020.2 33.705 359 204 10 274 625 59 390 1.27e-40 159
Msa0559100 AT3G63480.1 33.611 360 197 12 284 624 3 339 2.04e-40 154
Msa0559100 AT3G54870.1 32.923 325 175 9 323 625 144 447 2.26e-40 159
Msa0559100 AT3G54870.2 32.923 325 175 9 323 625 144 447 2.32e-40 159
Msa0559100 AT3G54870.3 32.923 325 175 9 323 625 144 447 2.49e-40 158
Msa0559100 AT1G18370.1 34.314 306 170 7 329 628 78 358 3.39e-39 155
Msa0559100 AT1G12430.1 31.267 371 202 11 285 625 71 418 1.33e-38 153
Msa0559100 AT1G12430.2 31.267 371 202 11 285 625 71 418 1.43e-38 153
Msa0559100 AT3G50240.3 37.234 282 147 7 368 624 3 279 1.84e-38 153
Msa0559100 AT5G02370.1 30.252 357 188 8 284 619 20 336 8.68e-38 148
Msa0559100 AT4G38950.3 32.797 311 167 7 329 623 60 344 7.32e-37 147
Msa0559100 AT4G38950.5 32.797 311 167 7 329 623 60 344 7.32e-37 147
Msa0559100 AT4G38950.4 32.797 311 167 7 329 623 60 344 7.32e-37 147
Msa0559100 AT4G38950.1 32.797 311 167 7 329 623 60 344 7.32e-37 147
Msa0559100 AT4G38950.2 32.797 311 167 7 329 623 60 344 7.32e-37 147
Msa0559100 AT3G51150.2 33.238 349 188 10 285 618 18 336 8.51e-37 148
Msa0559100 AT3G51150.4 33.238 349 188 10 285 618 18 336 8.51e-37 148
Msa0559100 AT3G51150.3 33.238 349 188 10 285 618 18 336 8.51e-37 148
Msa0559100 AT3G43210.3 34.897 341 186 11 285 617 30 342 8.85e-37 147
Msa0559100 AT3G43210.5 34.897 341 186 11 285 617 30 342 8.85e-37 147
Msa0559100 AT3G43210.2 34.897 341 186 11 285 617 30 342 8.85e-37 147
Msa0559100 AT3G43210.4 34.897 341 186 11 285 617 30 342 8.85e-37 147
Msa0559100 AT3G43210.1 34.897 341 186 11 285 617 30 342 8.85e-37 147
Msa0559100 AT3G51150.1 33.238 349 188 10 285 618 18 336 8.88e-37 147
Msa0559100 AT1G01950.2 30.352 369 210 10 281 624 57 403 1.11e-35 144
Msa0559100 AT1G01950.1 30.352 369 210 10 281 624 57 403 1.41e-35 144
Msa0559100 AT4G14330.1 34.641 306 172 10 329 628 89 372 1.68e-35 144
Msa0559100 AT5G66310.2 34.783 299 158 6 329 618 67 337 1.86e-35 144
Msa0559100 AT5G66310.3 34.783 299 158 6 329 618 67 337 1.86e-35 144
Msa0559100 AT5G66310.1 34.783 299 158 6 329 618 67 337 1.86e-35 144
Msa0559100 AT1G01950.3 30.352 369 210 10 281 624 57 403 2.03e-35 143
Msa0559100 AT3G16060.1 32.484 314 181 7 318 626 208 495 8.93e-35 140
Msa0559100 AT4G24170.1 33.876 307 157 10 326 618 47 321 1.52e-34 140
Msa0559100 AT4G24170.2 33.876 307 157 10 326 618 47 321 1.52e-34 140
Msa0559100 AT5G27950.2 36.546 249 145 5 377 623 1 238 1.68e-34 137
Msa0559100 AT2G21300.2 30.623 369 210 12 264 617 3 340 1.74e-34 140
Msa0559100 AT2G21300.4 30.623 369 210 12 264 617 3 340 1.74e-34 140
Msa0559100 AT2G21300.3 30.623 369 210 12 264 617 3 340 1.74e-34 140
Msa0559100 AT2G21300.1 30.623 369 210 12 264 617 3 340 1.74e-34 140
Msa0559100 AT2G21300.5 30.623 369 210 12 264 617 3 340 1.74e-34 140
Msa0559100 AT3G20150.1 33.333 318 172 10 329 623 136 436 1.82e-34 140
Msa0559100 AT3G20150.2 33.333 318 172 10 329 623 136 436 2.06e-34 140
Msa0559100 AT1G59540.2 35.573 253 137 6 377 623 1 233 1.90e-32 134
Msa0559100 AT3G16630.2 29.917 361 203 9 285 623 194 526 5.21e-30 126
Msa0559100 AT3G16630.1 29.917 361 203 9 285 623 194 526 5.21e-30 126
Msa0559100 AT1G01950.4 31.206 282 153 7 364 624 1 262 5.45e-26 114
Msa0559100 AT5G42490.2 32.922 243 132 5 329 566 56 272 1.43e-22 103
Msa0559100 AT5G42490.1 32.922 243 132 5 329 566 56 272 1.58e-22 103
Msa0559100 AT3G51150.5 42.553 141 67 3 488 618 47 183 1.10e-20 97.4
Msa0559100 AT5G65460.5 30.476 210 124 3 411 619 14 202 1.05e-19 94.4
Msa0559100 AT5G23910.2 28.808 302 174 13 324 620 54 319 5.79e-19 91.7
Msa0559100 AT5G23910.1 28.808 302 174 13 324 620 50 315 6.28e-19 91.7
Msa0559100 AT1G20060.3 29.450 309 181 10 331 625 165 450 3.11e-17 86.7
Msa0559100 AT1G20060.7 29.450 309 181 10 331 625 165 450 3.50e-17 86.3
Msa0559100 AT1G20060.9 29.450 309 181 10 331 625 165 450 3.53e-17 86.3
Msa0559100 AT1G20060.8 29.450 309 181 10 331 625 165 450 3.54e-17 86.3
Msa0559100 AT1G20060.10 29.450 309 181 10 331 625 165 450 3.57e-17 86.3
Msa0559100 AT1G20060.4 29.450 309 181 10 331 625 165 450 3.60e-17 86.3
Msa0559100 AT1G20060.2 29.450 309 181 10 331 625 165 450 3.70e-17 86.3
Msa0559100 AT1G20060.6 29.450 309 181 10 331 625 165 450 3.80e-17 86.3
Msa0559100 AT1G20060.5 29.450 309 181 10 331 625 165 450 4.21e-17 86.3
Msa0559100 AT1G20060.1 31.651 218 118 9 331 540 165 359 6.16e-13 72.8

Find 146 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGCATGTTCCTTTC+AGG 0.194253 4_1:+58120840 Msa0559100:CDS
ATACTCAAAATTGGATAAAT+TGG 0.218313 4_1:+58118056 Msa0559100:CDS
TAGAGTCAATGCTGTGAAAT+TGG 0.225841 4_1:+58121514 Msa0559100:CDS
AAATGGAAACACACATGTTT+TGG 0.247585 4_1:+58120008 Msa0559100:CDS
TCGTACCAGTTGACGGATTC+AGG 0.250426 4_1:-58115921 None:intergenic
AAACACAATAATACCTGATT+TGG 0.252458 4_1:-58120092 None:intergenic
GTTGACAAACATCAAAGTTT+TGG 0.254499 4_1:-58121435 None:intergenic
CCACTCAATGTTTAGAATCT+TGG 0.262112 4_1:+58121563 Msa0559100:exon
TAAGATCTCTTGTATCATTA+AGG 0.268393 4_1:-58117462 None:intergenic
ATATGAAACATACTCAAAAT+TGG 0.276205 4_1:+58118047 Msa0559100:CDS
ACCTGATTTGGGCAGCCTTT+TGG 0.295707 4_1:-58120080 None:intergenic
TGACAATAACAAATCTTTGA+TGG 0.318383 4_1:-58119908 None:intergenic
GCTTATGGACAAACGGGTTC+AGG 0.323393 4_1:+58119645 Msa0559100:CDS
GAAGGTAGGGTTTGCGGAGG+TGG 0.324439 4_1:-58115885 None:intergenic
GAAACAGCGCTGCTGTGTTT+GGG 0.337325 4_1:-58115807 None:intergenic
CTGTACCAGTTGTGATATTT+CGG 0.337342 4_1:-58119012 None:intergenic
AAAGGAGAAAATAAATATAC+TGG 0.354702 4_1:+58118222 Msa0559100:CDS
AGAGTCAATGCTGTGAAATT+GGG 0.355203 4_1:+58121515 Msa0559100:CDS
CACTTCCAGCCAAATCAATC+AGG 0.357452 4_1:-58120609 None:intergenic
CGAGCAGAAAATAGTGTTCA+TGG 0.366475 4_1:+58119958 Msa0559100:CDS
GAGCAATGTCATATTTGCTT+TGG 0.367142 4_1:+58120811 Msa0559100:CDS
GGCATTGAGTTGGAACAAAA+TGG 0.370931 4_1:+58118809 Msa0559100:CDS
AGAGTGTAGAACGAAATAAT+TGG 0.372051 4_1:-58121676 None:intergenic
TGTCTTAAACCTGATTGATT+TGG 0.373703 4_1:+58120600 Msa0559100:CDS
CTGGTCTACCCATCATTGTA+TGG 0.374103 4_1:-58119674 None:intergenic
GGGGTGTGATTTGTGAAATT+GGG 0.374727 4_1:-58115848 None:intergenic
GGAAACAGCGCTGCTGTGTT+TGG 0.375224 4_1:-58115808 None:intergenic
ATGAAGCGTTTCAATCTTGT+TGG 0.379069 4_1:-58116841 None:intergenic
AAAGAATTTCAAGTAGTTGA+AGG 0.379952 4_1:+58118549 Msa0559100:CDS
TTGTTCACCATTGCAGTTAA+CGG 0.384857 4_1:-58116228 None:intergenic
TCCAAAAGGCTGCCCAAATC+AGG 0.391053 4_1:+58120079 Msa0559100:CDS
GTGATTTGTGAAATTGGGAT+TGG 0.395381 4_1:-58115843 None:intergenic
AAGATTTGTTATTGTCAAAT+CGG 0.396139 4_1:+58119914 Msa0559100:CDS
CTCTTGTGTCTTCAGGTCAA+TGG 0.401417 4_1:+58120401 Msa0559100:intron
TGATACAAGAGATCTTAATA+AGG 0.404932 4_1:+58117468 Msa0559100:CDS
CCTTTGAGATCTGGAGAGTC+TGG 0.409206 4_1:-58119693 None:intergenic
AGATCTTAATAAGGAATTGC+AGG 0.409956 4_1:+58117477 Msa0559100:CDS
GGCTTAAGCTTTGTGTTCAA+TGG 0.411472 4_1:+58116814 Msa0559100:CDS
GTTAAGAAGTGTTCTGATAC+TGG 0.413284 4_1:+58116882 Msa0559100:CDS
CTTTCAAGGAGTGGGGCCAC+TGG 0.419503 4_1:+58120637 Msa0559100:CDS
AAATGATGTAATGTTAGAAC+GGG 0.420277 4_1:+58118005 Msa0559100:CDS
ATGGAAAGACAAAGAGTGTC+TGG 0.422928 4_1:+58116186 Msa0559100:CDS
GGTATCATCCCTTTGAGATC+TGG 0.431597 4_1:-58119702 None:intergenic
GGCCACTGGGGAACGTTTGA+AGG 0.442182 4_1:+58120651 Msa0559100:CDS
AAATATGACATTGCTCAAAC+AGG 0.446159 4_1:-58120804 None:intergenic
TTTCAAGGAGTGGGGCCACT+GGG 0.447460 4_1:+58120638 Msa0559100:CDS
AACACAATAATACCTGATTT+GGG 0.450436 4_1:-58120091 None:intergenic
TGCTCAAACAGGAGAGACTT+TGG 0.452914 4_1:-58120793 None:intergenic
TTTCACCGAAATATCACAAC+TGG 0.454210 4_1:+58119007 Msa0559100:CDS
GATGGCTGATTTATCTGCTA+TGG 0.457746 4_1:+58118461 Msa0559100:intron
CTGGTACAGAGTGCCCTTGA+TGG 0.459905 4_1:+58119026 Msa0559100:CDS
CTGGAAGTGAAAGACTTTCA+AGG 0.460124 4_1:+58120623 Msa0559100:CDS
AGAAGAGCATGTTCCTTTCA+GGG 0.462036 4_1:+58120841 Msa0559100:CDS
TCTTGTGTCTTCAGGTCAAT+GGG 0.464776 4_1:+58120402 Msa0559100:intron
GTCGTTACTTTGCGCATATG+TGG 0.465467 4_1:+58120465 Msa0559100:CDS
GTCCTCCTGAATCCGTCAAC+TGG 0.468446 4_1:+58115916 Msa0559100:five_prime_UTR
GTCAATAGAAATGCTTGGCC+GGG 0.470648 4_1:+58118787 Msa0559100:CDS
CATGTTTCTTGTAGAAATAG+AGG 0.474231 4_1:+58121642 Msa0559100:three_prime_UTR
CGTCAATAGAAATGCTTGGC+CGG 0.476762 4_1:+58118786 Msa0559100:CDS
TGCTGAAAGGGAGAAGTTAG+AGG 0.476851 4_1:+58118258 Msa0559100:CDS
AAAACTTACACACCTACTTC+AGG 0.477645 4_1:+58120868 Msa0559100:CDS
GGAGACTTGTTCCTCTCAAA+AGG 0.477958 4_1:+58118204 Msa0559100:intron
TGGCTTCTCGGAATCAGAAC+CGG 0.478047 4_1:+58116029 Msa0559100:CDS
GAATCACCTTGTAGCCATCA+AGG 0.484630 4_1:-58119040 None:intergenic
TTAAACCTGATTGATTTGGC+TGG 0.484981 4_1:+58120604 Msa0559100:CDS
TCGTAAACTACAAGATCAAT+TGG 0.486302 4_1:+58118521 Msa0559100:CDS
ATTTGTGAAATTGGGATTGG+TGG 0.487553 4_1:-58115840 None:intergenic
TGGTGAGAAGGTAGGGTTTG+CGG 0.491872 4_1:-58115891 None:intergenic
ATATTACTAGGCATCAGTAT+TGG 0.491971 4_1:+58119870 Msa0559100:intron
GGATTGCAGCCATGTCTTGA+AGG 0.492427 4_1:+58121407 Msa0559100:intron
CTTTAAGAGACTGACTGGTC+TGG 0.494270 4_1:-58119746 None:intergenic
GGAGGTGGAGTTAGAAGAGA+AGG 0.497800 4_1:-58115870 None:intergenic
GCAAAAGTTACATGCTGAAA+GGG 0.498320 4_1:+58118246 Msa0559100:CDS
TGGTCTACCCATCATTGTAT+GGG 0.498624 4_1:-58119673 None:intergenic
TAAATGATGTAATGTTAGAA+CGG 0.499918 4_1:+58118004 Msa0559100:CDS
GCGCTGCTGTGTTTGGGGAG+GGG 0.501045 4_1:-58115801 None:intergenic
GCTTGGCCGGGGCATTGAGT+TGG 0.504578 4_1:+58118799 Msa0559100:CDS
AGTCTCTTAAAGACCAGGGC+TGG 0.508242 4_1:+58119757 Msa0559100:CDS
GTGAAAGACTTTCAAGGAGT+GGG 0.510340 4_1:+58120629 Msa0559100:CDS
TCGTCAATTGAAGATTGATC+AGG 0.511344 4_1:-58121464 None:intergenic
AGCGCTGCTGTGTTTGGGGA+GGG 0.513394 4_1:-58115802 None:intergenic
AAAGGTTGGATCTGAAGAGA+TGG 0.513763 4_1:+58116167 Msa0559100:intron
GATGATCGCGATCGCCTACA+AGG 0.518619 4_1:+58117976 Msa0559100:CDS
GAGGTGGAGTTAGAAGAGAA+GGG 0.519391 4_1:-58115869 None:intergenic
TGAAATTGGGATTGGTGGCT+CGG 0.521834 4_1:-58115835 None:intergenic
AAAACTGCACAACACTGTCT+TGG 0.526321 4_1:+58118587 Msa0559100:CDS
GATTTCCTCCCTCCTCCAAA+AGG 0.527021 4_1:+58120065 Msa0559100:CDS
TTGGAATCCCCTTCAAGACA+TGG 0.527970 4_1:-58121416 None:intergenic
ACAAGATTCGTACCAGTTGA+CGG 0.538175 4_1:-58115928 None:intergenic
CAGTCAGTCTCTTAAAGACC+AGG 0.538247 4_1:+58119752 Msa0559100:CDS
AATATCTGTTCTAAAGAAAG+TGG 0.538396 4_1:-58119723 None:intergenic
CAGACTCTCCAGATCTCAAA+GGG 0.540107 4_1:+58119694 Msa0559100:CDS
GATTGCAGCCATGTCTTGAA+GGG 0.543595 4_1:+58121408 Msa0559100:intron
AAACAGCGCTGCTGTGTTTG+GGG 0.544574 4_1:-58115806 None:intergenic
TCTGAACGGTCTCGTAGTAA+AGG 0.547365 4_1:-58118737 None:intergenic
TGGGATTGGTGGCTCGGTGA+AGG 0.550844 4_1:-58115829 None:intergenic
GAGTGCCCTTGATGGCTACA+AGG 0.551892 4_1:+58119034 Msa0559100:CDS
AGGACGATGGTGAGAAGGTA+GGG 0.552194 4_1:-58115898 None:intergenic
TAAACATTGAGTGGATGTCT+AGG 0.556673 4_1:-58121554 None:intergenic
AGCAAAAGTTACATGCTGAA+AGG 0.557415 4_1:+58118245 Msa0559100:CDS
TTTGTTCCAACTCAATGCCC+CGG 0.558295 4_1:-58118805 None:intergenic
CTGGTCTTTAAGAGACTGAC+TGG 0.561616 4_1:-58119751 None:intergenic
GAGGACGATGGTGAGAAGGT+AGG 0.563898 4_1:-58115899 None:intergenic
GGGCTGGAATTACAAAATGC+AGG 0.564720 4_1:+58119773 Msa0559100:CDS
AGGTGGAGTTAGAAGAGAAG+GGG 0.565354 4_1:-58115868 None:intergenic
CCAAGATTCTAAACATTGAG+TGG 0.566179 4_1:-58121563 None:intergenic
CAGCGCTGCTGTGTTTGGGG+AGG 0.573453 4_1:-58115803 None:intergenic
CAAGCATTTCTATTGACGTA+GGG 0.573774 4_1:-58118781 None:intergenic
AAGTAAAACAGAGGCACTTG+AGG 0.575761 4_1:+58118080 Msa0559100:CDS
TAGTTGAAGGAGAAAAGCTA+AGG 0.579762 4_1:+58118562 Msa0559100:CDS
GAGATCTGATTGAAGCTCCT+CGG 0.580804 4_1:-58117380 None:intergenic
TCAGGAGGACGATGGTGAGA+AGG 0.581350 4_1:-58115903 None:intergenic
GAGTCAATGCTGTGAAATTG+GGG 0.581648 4_1:+58121516 Msa0559100:CDS
ATAAATGGCTTACATTGGAG+TGG 0.585939 4_1:-58116063 None:intergenic
CCTACGTCAATAGAAATGCT+TGG 0.587483 4_1:+58118782 Msa0559100:CDS
TCAATAGAAATGCTTGGCCG+GGG 0.588845 4_1:+58118788 Msa0559100:CDS
CCAGACTCTCCAGATCTCAA+AGG 0.588994 4_1:+58119693 Msa0559100:CDS
ATGTTTCTTGTAGAAATAGA+GGG 0.591156 4_1:+58121643 Msa0559100:three_prime_UTR
GGTGGAGTTAGAAGAGAAGG+GGG 0.592235 4_1:-58115867 None:intergenic
AGACCGTTCAGAAACGAAAA+CGG 0.594643 4_1:+58118748 Msa0559100:CDS
CCAAGCATTTCTATTGACGT+AGG 0.594729 4_1:-58118782 None:intergenic
TAGAGCGCCGTTAACTGCAA+TGG 0.596034 4_1:+58116221 Msa0559100:CDS
AGTGAAAGACTTTCAAGGAG+TGG 0.608249 4_1:+58120628 Msa0559100:CDS
AACACTGAACAACAAGTACA+AGG 0.609494 4_1:+58120577 Msa0559100:CDS
TGCGCAAAGTAACGACAAAG+TGG 0.612147 4_1:-58120458 None:intergenic
TATTGTCAAATCGGTCAAGT+GGG 0.612810 4_1:+58119923 Msa0559100:CDS
TTATTGTCAAATCGGTCAAG+TGG 0.613155 4_1:+58119922 Msa0559100:CDS
AATCACCTTGTAGCCATCAA+GGG 0.622158 4_1:-58119039 None:intergenic
ATTGCAGCCATGTCTTGAAG+GGG 0.623975 4_1:+58121409 Msa0559100:intron
GGAACGTTTGAAGGAAACTC+AGG 0.625035 4_1:+58120660 Msa0559100:CDS
TTCCTTCAAACGTTCCCCAG+TGG 0.633447 4_1:-58120653 None:intergenic
GAGGAGGGAGGAAATCTCAT+CGG 0.641873 4_1:-58120058 None:intergenic
TGAAAGACTTTCAAGGAGTG+GGG 0.656119 4_1:+58120630 Msa0559100:CDS
ATGAGAGAAATACACTGGAG+AGG 0.661952 4_1:+58115776 None:intergenic
TAAATTGGCAAGTAAAACAG+AGG 0.665756 4_1:+58118071 Msa0559100:CDS
GGTGAAAACGTCATGCTGAG+AGG 0.665998 4_1:-58118991 None:intergenic
GGCACTACAAACATCGACAA+TGG 0.670045 4_1:-58120037 None:intergenic
AGATGGTGGATCTTATTAAG+CGG 0.670837 4_1:+58116793 Msa0559100:CDS
TACAAACATCGACAATGGTG+AGG 0.674542 4_1:-58120032 None:intergenic
AGATCTCAATTCAGCTAACG+AGG 0.675031 4_1:+58117396 Msa0559100:CDS
TGACGGATTCAGGAGGACGA+TGG 0.677109 4_1:-58115911 None:intergenic
TGAGAAGGTAGGGTTTGCGG+AGG 0.685494 4_1:-58115888 None:intergenic
TTCAAGGAGTGGGGCCACTG+GGG 0.688770 4_1:+58120639 Msa0559100:CDS
TACCAGTTGACGGATTCAGG+AGG 0.691403 4_1:-58115918 None:intergenic
AGTCAGTCTCTTAAAGACCA+GGG 0.703830 4_1:+58119753 Msa0559100:CDS
GCGCATATGTGGTATAAACG+AGG 0.734281 4_1:+58120476 Msa0559100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATATAAACAAATATAA+AGG - chr4_1:58119366-58119385 None:intergenic 10.0%
!!! GATTTTTATTTTACTTTTTT+TGG + chr4_1:58121121-58121140 Msa0559100:intron 10.0%
!! TTAACTACATGATAAAATTA+GGG - chr4_1:58115973-58115992 None:intergenic 15.0%
!!! AGCTTAATTTTTTTTATAGA+TGG + chr4_1:58116009-58116028 Msa0559100:intron 15.0%
!! AAAAATACGAATTTGATAAA+TGG - chr4_1:58116081-58116100 None:intergenic 15.0%
!!! TCAAATATTTTATCTTTAAG+CGG + chr4_1:58116543-58116562 Msa0559100:intron 15.0%
!!! TCTTTTAATGTTATAAAAGT+AGG + chr4_1:58116697-58116716 Msa0559100:intron 15.0%
!! ATTATATTTATCACAAAAGA+CGG - chr4_1:58116921-58116940 None:intergenic 15.0%
!! TAAATATAATAAAACCCAAT+TGG - chr4_1:58118288-58118307 None:intergenic 15.0%
!!! GGGTTTTATTATATTTAATA+TGG + chr4_1:58118291-58118310 Msa0559100:intron 15.0%
!!! TTATGAGAAACTTTTAATAA+TGG - chr4_1:58118328-58118347 None:intergenic 15.0%
!! AAATGATAAAATGTTTATGA+TGG + chr4_1:58118350-58118369 Msa0559100:intron 15.0%
!!! GCTAAATTATTTTTATTTCT+AGG + chr4_1:58118676-58118695 Msa0559100:intron 15.0%
!!! AACACTCAATTTTTTTTTTT+AGG - chr4_1:58119120-58119139 None:intergenic 15.0%
!!! ATTTTCATATTCATATTACT+AGG + chr4_1:58119858-58119877 Msa0559100:intron 15.0%
!! GCATTATGAAATAAATAATA+AGG - chr4_1:58120538-58120557 None:intergenic 15.0%
!! TCAATAATGCAAAATTATAT+GGG - chr4_1:58120904-58120923 None:intergenic 15.0%
!! ATCAATAATGCAAAATTATA+TGG - chr4_1:58120905-58120924 None:intergenic 15.0%
!! GTTAACTACATGATAAAATT+AGG - chr4_1:58115974-58115993 None:intergenic 20.0%
!!! TTTCTTATGATTTCTGAAAA+AGG + chr4_1:58116149-58116168 Msa0559100:intron 20.0%
!!! TTATCTTACTCAATTTTTCA+AGG + chr4_1:58116373-58116392 Msa0559100:intron 20.0%
!!! TATCTTACTCAATTTTTCAA+GGG + chr4_1:58116374-58116393 Msa0559100:intron 20.0%
!!! TTTTGATATGCAGAAAAAAA+TGG + chr4_1:58116767-58116786 Msa0559100:intron 20.0%
!! TGTGATAAATATAATTGTGT+TGG + chr4_1:58116926-58116945 Msa0559100:intron 20.0%
!! GTGATAAATATAATTGTGTT+GGG + chr4_1:58116927-58116946 Msa0559100:intron 20.0%
!!! AAGTAGTTTGCTTATATAAT+AGG + chr4_1:58117122-58117141 Msa0559100:intron 20.0%
!!! TAAAGCAAAACAAAGATTTT+TGG - chr4_1:58117249-58117268 None:intergenic 20.0%
!! ACTCAAAATAAATACTTTCA+GGG - chr4_1:58117285-58117304 None:intergenic 20.0%
!! TACTCAAAATAAATACTTTC+AGG - chr4_1:58117286-58117305 None:intergenic 20.0%
!!! TGAAAGTATTTATTTTGAGT+AGG + chr4_1:58117285-58117304 Msa0559100:intron 20.0%
!!! CACATACATTTTTTATGATT+TGG - chr4_1:58117598-58117617 None:intergenic 20.0%
!! AAAAAATTTCCAATAGGTAT+AGG - chr4_1:58117623-58117642 None:intergenic 20.0%
!! TTTGTTAAAGAATGAATTGA+AGG + chr4_1:58117648-58117667 Msa0559100:intron 20.0%
!!! TAATTTTTTTTAGTTCTTCG+CGG - chr4_1:58117954-58117973 None:intergenic 20.0%
!! TAAATGATGTAATGTTAGAA+CGG + chr4_1:58118004-58118023 Msa0559100:CDS 20.0%
!! ATATGAAACATACTCAAAAT+TGG + chr4_1:58118047-58118066 Msa0559100:CDS 20.0%
!! ATACTCAAAATTGGATAAAT+TGG + chr4_1:58118056-58118075 Msa0559100:CDS 20.0%
!! AAAGGAGAAAATAAATATAC+TGG + chr4_1:58118222-58118241 Msa0559100:CDS 20.0%
!! ATTGATTGAATGTTTAATGT+TGG + chr4_1:58119196-58119215 Msa0559100:intron 20.0%
!!! TTTAAAACAGAGGTTTTTAA+AGG - chr4_1:58119311-58119330 None:intergenic 20.0%
!!! TTGATTTGTTGTTTTGTTTT+GGG + chr4_1:58119571-58119590 Msa0559100:intron 20.0%
!! GTAATATGAATATGAAAATC+AGG - chr4_1:58119857-58119876 None:intergenic 20.0%
!!! AAGATTTGTTATTGTCAAAT+CGG + chr4_1:58119914-58119933 Msa0559100:CDS 20.0%
!! CATATAAAGAAAACATTTAC+AGG - chr4_1:58120133-58120152 None:intergenic 20.0%
!!! CTGTAAATGTTTTCTTTATA+TGG + chr4_1:58120131-58120150 Msa0559100:intron 20.0%
!!! TGGAAATAGTATTTTCAATA+CGG - chr4_1:58120209-58120228 None:intergenic 20.0%
!! ATTGGATTCTAATATACTTA+TGG + chr4_1:58121047-58121066 Msa0559100:intron 20.0%
!! TTGGATTCTAATATACTTAT+GGG + chr4_1:58121048-58121067 Msa0559100:intron 20.0%
!!! ACAATTAAAAGCATCAATTA+AGG + chr4_1:58121090-58121109 Msa0559100:intron 20.0%
!! CGACAATATAAATATGTTAT+GGG - chr4_1:58121388-58121407 None:intergenic 20.0%
!! CCATAACATATTTATATTGT+CGG + chr4_1:58121386-58121405 Msa0559100:intron 20.0%
!!! TTTTTTTATAGATGGCTTCT+CGG + chr4_1:58116017-58116036 Msa0559100:intron 25.0%
! ATTTGATAAATGGCTTACAT+TGG - chr4_1:58116071-58116090 None:intergenic 25.0%
!! TTATGATTTCTGAAAAAGGT+TGG + chr4_1:58116153-58116172 Msa0559100:intron 25.0%
! CTTAATGAGAAGATGAAAAA+GGG + chr4_1:58116324-58116343 Msa0559100:intron 25.0%
! AGACAAACCTTATTATCAAA+AGG - chr4_1:58116354-58116373 None:intergenic 25.0%
!!! TTTTGGAGAACTTTTGAAAA+CGG + chr4_1:58116447-58116466 Msa0559100:intron 25.0%
!! AATTAGGTTGTTTATCCAAT+CGG + chr4_1:58116662-58116681 Msa0559100:intron 25.0%
!!! ATAAAAGTAGGTGTTGTTTA+TGG + chr4_1:58116709-58116728 Msa0559100:intron 25.0%
!! TGTTGTTTATGGAACTTATT+TGG + chr4_1:58116720-58116739 Msa0559100:intron 25.0%
! GTTGTTTATGGAACTTATTT+GGG + chr4_1:58116721-58116740 Msa0559100:intron 25.0%
! CTAATCAGTCACAATATTTA+GGG - chr4_1:58117008-58117027 None:intergenic 25.0%
! TAAGATCTCTTGTATCATTA+AGG - chr4_1:58117465-58117484 None:intergenic 25.0%
! TGATACAAGAGATCTTAATA+AGG + chr4_1:58117468-58117487 Msa0559100:CDS 25.0%
!!! CATCATTTAATTTTCCTTGT+AGG - chr4_1:58117993-58118012 None:intergenic 25.0%
! AAATGATGTAATGTTAGAAC+GGG + chr4_1:58118005-58118024 Msa0559100:CDS 25.0%
! TAAATAGACGATCTTAACAT+AGG - chr4_1:58118129-58118148 None:intergenic 25.0%
!!! ATTTATTTTCTCCTTTTGAG+AGG - chr4_1:58118218-58118237 None:intergenic 25.0%
!! ACCAACTTATATTTTCTTTC+TGG + chr4_1:58118426-58118445 Msa0559100:intron 25.0%
!! CCAACTTATATTTTCTTTCT+GGG + chr4_1:58118427-58118446 Msa0559100:intron 25.0%
!! CAACTTATATTTTCTTTCTG+GGG + chr4_1:58118428-58118447 Msa0559100:intron 25.0%
!! AAAGAATTTCAAGTAGTTGA+AGG + chr4_1:58118549-58118568 Msa0559100:CDS 25.0%
! TGAAAATCGTAAGAAACAAT+AGG - chr4_1:58118867-58118886 None:intergenic 25.0%
!! GAAATAAACTGAACTTTTTG+TGG - chr4_1:58119431-58119450 None:intergenic 25.0%
!!! GTTGATTTGTTGTTTTGTTT+TGG + chr4_1:58119570-58119589 Msa0559100:intron 25.0%
! TTTGGGTATAAATTATGATC+TGG + chr4_1:58119588-58119607 Msa0559100:intron 25.0%
! TATAAATTATGATCTGGACA+TGG + chr4_1:58119594-58119613 Msa0559100:intron 25.0%
!!! AATATCTGTTCTAAAGAAAG+TGG - chr4_1:58119726-58119745 None:intergenic 25.0%
! TGACAATAACAAATCTTTGA+TGG - chr4_1:58119911-58119930 None:intergenic 25.0%
! ACTATTAGACATGACAAAAA+TGG + chr4_1:58119991-58120010 Msa0559100:CDS 25.0%
! AACACAATAATACCTGATTT+GGG - chr4_1:58120094-58120113 None:intergenic 25.0%
! AAACACAATAATACCTGATT+TGG - chr4_1:58120095-58120114 None:intergenic 25.0%
!! TCAAAAAGTGATAAGTTGAA+TGG - chr4_1:58120229-58120248 None:intergenic 25.0%
! TGGTTTCATTTATGAAACAT+AGG + chr4_1:58120360-58120379 Msa0559100:intron 25.0%
! ATTGTAGATTGTGTTATGAT+TGG - chr4_1:58121284-58121303 None:intergenic 25.0%
! CCGACAATATAAATATGTTA+TGG - chr4_1:58121389-58121408 None:intergenic 25.0%
! ATGTTTCTTGTAGAAATAGA+GGG + chr4_1:58121643-58121662 Msa0559100:three_prime_UTR 25.0%
ACTACATGATAAAATTAGGG+AGG - chr4_1:58115970-58115989 None:intergenic 30.0%
! ATCTTTTGTGAACTCAATTG+CGG - chr4_1:58116289-58116308 None:intergenic 30.0%
GTTCACAAAAGATGATATAG+AGG + chr4_1:58116296-58116315 Msa0559100:intron 30.0%
GCTTAATGAGAAGATGAAAA+AGG + chr4_1:58116323-58116342 Msa0559100:intron 30.0%
AGCTGCAAATTAAGCTAATT+AGG + chr4_1:58116646-58116665 Msa0559100:intron 30.0%
! ATTAGGTTGTTTATCCAATC+GGG + chr4_1:58116663-58116682 Msa0559100:intron 30.0%
TTCTGCATATCAAAAACATG+AGG - chr4_1:58116762-58116781 None:intergenic 30.0%
CCTAATCAGTCACAATATTT+AGG - chr4_1:58117009-58117028 None:intergenic 30.0%
CCTAAATATTGTGACTGATT+AGG + chr4_1:58117006-58117025 Msa0559100:intron 30.0%
AGATCTTAATAAGGAATTGC+AGG + chr4_1:58117477-58117496 Msa0559100:CDS 30.0%
AGCAGCAAAAAATTTCCAAT+AGG - chr4_1:58117629-58117648 None:intergenic 30.0%
CAAAATTCAAGTGCTTGAAA+AGG - chr4_1:58117747-58117766 None:intergenic 30.0%
TTGCAGAGAGGAAATAATTA+AGG + chr4_1:58117787-58117806 Msa0559100:intron 30.0%
CTTGCAACAAAAATATGGAA+AGG - chr4_1:58117848-58117867 None:intergenic 30.0%
AATCCTGAGATAAGAAGAAA+GGG - chr4_1:58117897-58117916 None:intergenic 30.0%
TAAATTGGCAAGTAAAACAG+AGG + chr4_1:58118071-58118090 Msa0559100:CDS 30.0%
AAGTTAGAGGTAATCCAATT+GGG + chr4_1:58118271-58118290 Msa0559100:intron 30.0%
!!! ATATAAGTTGGTGTCAGTTT+TGG - chr4_1:58118418-58118437 None:intergenic 30.0%
CCCAGAAAGAAAATATAAGT+TGG - chr4_1:58118430-58118449 None:intergenic 30.0%
TCGTAAACTACAAGATCAAT+TGG + chr4_1:58118521-58118540 Msa0559100:CDS 30.0%
!!! TTTTATTTCTAGGAGCTGAA+AGG + chr4_1:58118686-58118705 Msa0559100:intron 30.0%
TTGTCCTGTAAAAAATTAGC+AGG + chr4_1:58118924-58118943 Msa0559100:intron 30.0%
! ACAGCTTTTTACATTTGACA+AGG + chr4_1:58118953-58118972 Msa0559100:CDS 30.0%
ATGATACATTATGAAGCGAA+AGG - chr4_1:58119076-58119095 None:intergenic 30.0%
CTTTCTTGTGTTTGATATCT+TGG + chr4_1:58119392-58119411 Msa0559100:intron 30.0%
CAAAGAATATGTGAAGGAAA+AGG - chr4_1:58119540-58119559 None:intergenic 30.0%
! CTTTTCCTTCACATATTCTT+TGG + chr4_1:58119538-58119557 Msa0559100:intron 30.0%
! TAGGTATGCATTTTTGCTTA+TGG + chr4_1:58119630-58119649 Msa0559100:intron 30.0%
! CATTTTTGCTTATGGACAAA+CGG + chr4_1:58119638-58119657 Msa0559100:CDS 30.0%
! ATTTTTGCTTATGGACAAAC+GGG + chr4_1:58119639-58119658 Msa0559100:CDS 30.0%
TTGACATGTTGTCACATAAA+TGG + chr4_1:58119823-58119842 Msa0559100:intron 30.0%
ATATTACTAGGCATCAGTAT+TGG + chr4_1:58119870-58119889 Msa0559100:intron 30.0%
! AAATGGAAACACACATGTTT+TGG + chr4_1:58120008-58120027 Msa0559100:CDS 30.0%
TATTGTGTTTGCTCCATATT+AGG + chr4_1:58120105-58120124 Msa0559100:intron 30.0%
ACATTTACAGGATCCTAATA+TGG - chr4_1:58120121-58120140 None:intergenic 30.0%
TGGTGTAAGAATAAACATTG+TGG + chr4_1:58120151-58120170 Msa0559100:intron 30.0%
GGTGTAAGAATAAACATTGT+GGG + chr4_1:58120152-58120171 Msa0559100:intron 30.0%
TGTAACAAAACTTATCGTGA+AGG - chr4_1:58120508-58120527 None:intergenic 30.0%
TGTCTTAAACCTGATTGATT+TGG + chr4_1:58120600-58120619 Msa0559100:CDS 30.0%
TTCATTGTTGTGTCATATTC+AGG + chr4_1:58120763-58120782 Msa0559100:intron 30.0%
AAATATGACATTGCTCAAAC+AGG - chr4_1:58120807-58120826 None:intergenic 30.0%
! GGTTTTTATATACCTGAAGT+AGG - chr4_1:58120883-58120902 None:intergenic 30.0%
GCAGTATCATTTCTTAAGAT+TGG + chr4_1:58121029-58121048 Msa0559100:intron 30.0%
ATCATCTCATGTTAGAACTT+AGG + chr4_1:58121251-58121270 Msa0559100:intron 30.0%
! GTTGACAAACATCAAAGTTT+TGG - chr4_1:58121438-58121457 None:intergenic 30.0%
CATGTTTCTTGTAGAAATAG+AGG + chr4_1:58121642-58121661 Msa0559100:three_prime_UTR 30.0%
ATTTGTGAAATTGGGATTGG+TGG - chr4_1:58115843-58115862 None:intergenic 35.0%
! GTGATTTGTGAAATTGGGAT+TGG - chr4_1:58115846-58115865 None:intergenic 35.0%
AGGGAGGAATGAAATTGAAA+TGG - chr4_1:58115954-58115973 None:intergenic 35.0%
ATAAATGGCTTACATTGGAG+TGG - chr4_1:58116066-58116085 None:intergenic 35.0%
TTGTTCACCATTGCAGTTAA+CGG - chr4_1:58116231-58116250 None:intergenic 35.0%
!! GGGAACTCCTTTTGATAATA+AGG + chr4_1:58116344-58116363 Msa0559100:intron 35.0%
TCGAATAAGTCAATCCAAAC+GGG - chr4_1:58116400-58116419 None:intergenic 35.0%
CTCGAATAAGTCAATCCAAA+CGG - chr4_1:58116401-58116420 None:intergenic 35.0%
!! GAACTTTTGAAAACGGCTTA+TGG + chr4_1:58116454-58116473 Msa0559100:intron 35.0%
! TTAGGTTGTTTATCCAATCG+GGG + chr4_1:58116664-58116683 Msa0559100:intron 35.0%
ATGGAACTTATTTGGGTGTT+TGG + chr4_1:58116728-58116747 Msa0559100:intron 35.0%
!! AGATGGTGGATCTTATTAAG+CGG + chr4_1:58116793-58116812 Msa0559100:CDS 35.0%
! ATGAAGCGTTTCAATCTTGT+TGG - chr4_1:58116844-58116863 None:intergenic 35.0%
!! GTTAAGAAGTGTTCTGATAC+TGG + chr4_1:58116882-58116901 Msa0559100:CDS 35.0%
CTAGTGATTGTGCCATAATT+TGG + chr4_1:58117165-58117184 Msa0559100:intron 35.0%
TGAGATGAAAAATAAGACCG+AGG + chr4_1:58117363-58117382 Msa0559100:CDS 35.0%
GTATGTGAACCTATACCTAT+TGG + chr4_1:58117611-58117630 Msa0559100:intron 35.0%
AATTCAAGTGCTTGAAAAGG+AGG - chr4_1:58117744-58117763 None:intergenic 35.0%
TAAGTAACATTGTTGCAGAG+AGG + chr4_1:58117775-58117794 Msa0559100:intron 35.0%
AGAGGCTTGCAACAAAAATA+TGG - chr4_1:58117853-58117872 None:intergenic 35.0%
AACGCAACACAAAAAATGAG+AGG - chr4_1:58117871-58117890 None:intergenic 35.0%
GAATCCTGAGATAAGAAGAA+AGG - chr4_1:58117898-58117917 None:intergenic 35.0%
CAATAGTGTGTTTCCTTTAC+AGG + chr4_1:58118183-58118202 Msa0559100:intron 35.0%
AGCAAAAGTTACATGCTGAA+AGG + chr4_1:58118245-58118264 Msa0559100:CDS 35.0%
GCAAAAGTTACATGCTGAAA+GGG + chr4_1:58118246-58118265 Msa0559100:CDS 35.0%
GAAGTTAGAGGTAATCCAAT+TGG + chr4_1:58118270-58118289 Msa0559100:intron 35.0%
TAGTTGAAGGAGAAAAGCTA+AGG + chr4_1:58118562-58118581 Msa0559100:CDS 35.0%
!! AACACTGTCTTGGTAATGTT+TGG + chr4_1:58118597-58118616 Msa0559100:intron 35.0%
CAAGCATTTCTATTGACGTA+GGG - chr4_1:58118784-58118803 None:intergenic 35.0%
ATCGTAAGAAACAATAGGAG+TGG - chr4_1:58118862-58118881 None:intergenic 35.0%
!!! CTGTCCTGCTAATTTTTTAC+AGG - chr4_1:58118931-58118950 None:intergenic 35.0%
TTTCACCGAAATATCACAAC+TGG + chr4_1:58119007-58119026 Msa0559100:CDS 35.0%
CTGTACCAGTTGTGATATTT+CGG - chr4_1:58119015-58119034 None:intergenic 35.0%
ATACATTATGAAGCGAAAGG+AGG - chr4_1:58119073-58119092 None:intergenic 35.0%
!!! GTGGAGCTTTTTTAAAACAG+AGG - chr4_1:58119321-58119340 None:intergenic 35.0%
!! TTGTGTACTTCAAGTGTTGA+TGG - chr4_1:58119343-58119362 None:intergenic 35.0%
AGAAGCCAAAGAATATGTGA+AGG - chr4_1:58119546-58119565 None:intergenic 35.0%
ACATGGCTGTTTATTATGCT+AGG + chr4_1:58119611-58119630 Msa0559100:intron 35.0%
AGGAAAAACCCATACAATGA+TGG + chr4_1:58119665-58119684 Msa0559100:CDS 35.0%
GGAAAAACCCATACAATGAT+GGG + chr4_1:58119666-58119685 Msa0559100:CDS 35.0%
TGGAATTACAAAATGCAGGT+TGG + chr4_1:58119777-58119796 Msa0559100:intron 35.0%
TTATTGTCAAATCGGTCAAG+TGG + chr4_1:58119922-58119941 Msa0559100:CDS 35.0%
TATTGTCAAATCGGTCAAGT+GGG + chr4_1:58119923-58119942 Msa0559100:CDS 35.0%
ACTAGAGTCTACATATAGCT+TGG + chr4_1:58120337-58120356 Msa0559100:intron 35.0%
AACACTGAACAACAAGTACA+AGG + chr4_1:58120577-58120596 Msa0559100:CDS 35.0%
!! TTAAACCTGATTGATTTGGC+TGG + chr4_1:58120604-58120623 Msa0559100:CDS 35.0%
TATTTATGATCTTGAGCTCC+TGG + chr4_1:58120706-58120725 Msa0559100:intron 35.0%
AGAAAGTTGAATCATTCACC+AGG - chr4_1:58120727-58120746 None:intergenic 35.0%
GAGCAATGTCATATTTGCTT+TGG + chr4_1:58120811-58120830 Msa0559100:CDS 35.0%
!!! GTAAGTTTTGAATCCCTGAA+AGG - chr4_1:58120857-58120876 None:intergenic 35.0%
AAAACTTACACACCTACTTC+AGG + chr4_1:58120868-58120887 Msa0559100:CDS 35.0%
!! CTTGTTTCAACGGATTAAAG+CGG - chr4_1:58121197-58121216 None:intergenic 35.0%
! GAGTGACTTTCTTGTTTCAA+CGG - chr4_1:58121207-58121226 None:intergenic 35.0%
TCAAGTCCATATTCTCTGAA+GGG - chr4_1:58121229-58121248 None:intergenic 35.0%
ATCAAGTCCATATTCTCTGA+AGG - chr4_1:58121230-58121249 None:intergenic 35.0%
! TAAATATGTTATGGGAGCAC+TGG - chr4_1:58121380-58121399 None:intergenic 35.0%
TCGTCAATTGAAGATTGATC+AGG - chr4_1:58121467-58121486 None:intergenic 35.0%
TAGAGTCAATGCTGTGAAAT+TGG + chr4_1:58121514-58121533 Msa0559100:CDS 35.0%
AGAGTCAATGCTGTGAAATT+GGG + chr4_1:58121515-58121534 Msa0559100:CDS 35.0%
TAAACATTGAGTGGATGTCT+AGG - chr4_1:58121557-58121576 None:intergenic 35.0%
CCAAGATTCTAAACATTGAG+TGG - chr4_1:58121566-58121585 None:intergenic 35.0%
! CCACTCAATGTTTAGAATCT+TGG + chr4_1:58121563-58121582 Msa0559100:exon 35.0%
! GGGGTGTGATTTGTGAAATT+GGG - chr4_1:58115851-58115870 None:intergenic 40.0%
ACAAGATTCGTACCAGTTGA+CGG - chr4_1:58115931-58115950 None:intergenic 40.0%
!! CTTACATTGGAGTGGTTTTG+AGG - chr4_1:58116058-58116077 None:intergenic 40.0%
AAAGGTTGGATCTGAAGAGA+TGG + chr4_1:58116167-58116186 Msa0559100:intron 40.0%
!! ATGGAAAGACAAAGAGTGTC+TGG + chr4_1:58116186-58116205 Msa0559100:CDS 40.0%
GCTACTGCAAGTAATGTAGA+GGG + chr4_1:58116252-58116271 Msa0559100:intron 40.0%
! AAGCACTTGTGAGACTGTTT+TGG + chr4_1:58116430-58116449 Msa0559100:intron 40.0%
TTTCCAGCAAAAAGCTATGC+TGG - chr4_1:58116520-58116539 None:intergenic 40.0%
AGATAGATTAAAGCCCCGAT+TGG - chr4_1:58116680-58116699 None:intergenic 40.0%
GCAGAAAAAAATGGAGCAGA+TGG + chr4_1:58116776-58116795 Msa0559100:intron 40.0%
GAAAAAAATGGAGCAGATGG+TGG + chr4_1:58116779-58116798 Msa0559100:intron 40.0%
! GGCTTAAGCTTTGTGTTCAA+TGG + chr4_1:58116814-58116833 Msa0559100:CDS 40.0%
CCAAAAGACCAAAACTAACG+CGG + chr4_1:58116960-58116979 Msa0559100:intron 40.0%
!! TTTTGTGTGTGCTTTTTGCG+TGG + chr4_1:58117037-58117056 Msa0559100:intron 40.0%
CTCTCTACAGTGCCAAATTA+TGG - chr4_1:58117180-58117199 None:intergenic 40.0%
AGATCTCAATTCAGCTAACG+AGG + chr4_1:58117396-58117415 Msa0559100:CDS 40.0%
ATGAATTGAAGGAGAGTAGC+TGG + chr4_1:58117659-58117678 Msa0559100:intron 40.0%
TGAATTGAAGGAGAGTAGCT+GGG + chr4_1:58117660-58117679 Msa0559100:intron 40.0%
GATCCCTTTCTTCTTATCTC+AGG + chr4_1:58117891-58117910 Msa0559100:intron 40.0%
!! AAGTAAAACAGAGGCACTTG+AGG + chr4_1:58118080-58118099 Msa0559100:CDS 40.0%
!!! TATTTTCTTTCTGGGGCTTC+TGG + chr4_1:58118435-58118454 Msa0559100:intron 40.0%
! GATGGCTGATTTATCTGCTA+TGG + chr4_1:58118461-58118480 Msa0559100:intron 40.0%
AAAACTGCACAACACTGTCT+TGG + chr4_1:58118587-58118606 Msa0559100:CDS 40.0%
AGACCGTTCAGAAACGAAAA+CGG + chr4_1:58118748-58118767 Msa0559100:CDS 40.0%
! CAACCGTTTTCGTTTCTGAA+CGG - chr4_1:58118754-58118773 None:intergenic 40.0%
CCAAGCATTTCTATTGACGT+AGG - chr4_1:58118785-58118804 None:intergenic 40.0%
CCTACGTCAATAGAAATGCT+TGG + chr4_1:58118782-58118801 Msa0559100:CDS 40.0%
!! GGCATTGAGTTGGAACAAAA+TGG + chr4_1:58118809-58118828 Msa0559100:CDS 40.0%
AAACAATAGGAGTGGAGTAG+CGG - chr4_1:58118854-58118873 None:intergenic 40.0%
AATCACCTTGTAGCCATCAA+GGG - chr4_1:58119042-58119061 None:intergenic 40.0%
!! TGTACTTCAAGTGTTGATGG+TGG - chr4_1:58119340-58119359 None:intergenic 40.0%
TGATATCTTGGATGTGCCTT+TGG + chr4_1:58119404-58119423 Msa0559100:intron 40.0%
! CTGAACTTTTTGTGGTCCAA+AGG - chr4_1:58119423-58119442 None:intergenic 40.0%
ATTGTACCCTTACGTAGACA+TGG + chr4_1:58119499-58119518 Msa0559100:intron 40.0%
AGTAAGCCATGTCTACGTAA+GGG - chr4_1:58119508-58119527 None:intergenic 40.0%
TGGTCTACCCATCATTGTAT+GGG - chr4_1:58119676-58119695 None:intergenic 40.0%
AGTCAGTCTCTTAAAGACCA+GGG + chr4_1:58119753-58119772 Msa0559100:CDS 40.0%
! CACTATTTTCTGCTCGTGTT+TGG - chr4_1:58119954-58119973 None:intergenic 40.0%
CGAGCAGAAAATAGTGTTCA+TGG + chr4_1:58119958-58119977 Msa0559100:CDS 40.0%
TACAAACATCGACAATGGTG+AGG - chr4_1:58120035-58120054 None:intergenic 40.0%
! CAGTATGCTCTTGTTGTACT+TGG + chr4_1:58120309-58120328 Msa0559100:intron 40.0%
AGAGTCTACATATAGCTTGG+TGG + chr4_1:58120340-58120359 Msa0559100:intron 40.0%
ATTGACCTGAAGACACAAGA+GGG - chr4_1:58120402-58120421 None:intergenic 40.0%
TCTTGTGTCTTCAGGTCAAT+GGG + chr4_1:58120402-58120421 Msa0559100:intron 40.0%
CTGGAAGTGAAAGACTTTCA+AGG + chr4_1:58120623-58120642 Msa0559100:CDS 40.0%
AGTGAAAGACTTTCAAGGAG+TGG + chr4_1:58120628-58120647 Msa0559100:CDS 40.0%
GTGAAAGACTTTCAAGGAGT+GGG + chr4_1:58120629-58120648 Msa0559100:CDS 40.0%
TGAAAGACTTTCAAGGAGTG+GGG + chr4_1:58120630-58120649 Msa0559100:CDS 40.0%
! AAGAAGAGCATGTTCCTTTC+AGG + chr4_1:58120840-58120859 Msa0559100:CDS 40.0%
! AGAAGAGCATGTTCCTTTCA+GGG + chr4_1:58120841-58120860 Msa0559100:CDS 40.0%
GAGTCAATGCTGTGAAATTG+GGG + chr4_1:58121516-58121535 Msa0559100:CDS 40.0%
! TGAAATTGGGATTGGTGGCT+CGG - chr4_1:58115838-58115857 None:intergenic 45.0%
! GGGGGTGTGATTTGTGAAAT+TGG - chr4_1:58115852-58115871 None:intergenic 45.0%
AGGTGGAGTTAGAAGAGAAG+GGG - chr4_1:58115871-58115890 None:intergenic 45.0%
GAGGTGGAGTTAGAAGAGAA+GGG - chr4_1:58115872-58115891 None:intergenic 45.0%
!!! ACATTGGAGTGGTTTTGAGG+AGG - chr4_1:58116055-58116074 None:intergenic 45.0%
CGCTACTGCAAGTAATGTAG+AGG + chr4_1:58116251-58116270 Msa0559100:intron 45.0%
!!! CAATTTTTCAAGGGCCCGTT+TGG + chr4_1:58116383-58116402 Msa0559100:intron 45.0%
! TCTCCAGCATAGCTTTTTGC+TGG + chr4_1:58116514-58116533 Msa0559100:intron 45.0%
!!! CCGCGTTAGTTTTGGTCTTT+TGG - chr4_1:58116963-58116982 None:intergenic 45.0%
!! AAGTCTCTCCGCGTTAGTTT+TGG - chr4_1:58116971-58116990 None:intergenic 45.0%
GAGATCTGATTGAAGCTCCT+CGG - chr4_1:58117383-58117402 None:intergenic 45.0%
!!! AGGCTAATGTTTTAGCCCAG+TGG - chr4_1:58117721-58117740 None:intergenic 45.0%
TCAAGTGCTTGAAAAGGAGG+AGG - chr4_1:58117741-58117760 None:intergenic 45.0%
GAGGAACAAGTCTCCTGTAA+AGG - chr4_1:58118199-58118218 None:intergenic 45.0%
! GGAGACTTGTTCCTCTCAAA+AGG + chr4_1:58118204-58118223 Msa0559100:intron 45.0%
TGCTGAAAGGGAGAAGTTAG+AGG + chr4_1:58118258-58118277 Msa0559100:CDS 45.0%
TCTGAACGGTCTCGTAGTAA+AGG - chr4_1:58118740-58118759 None:intergenic 45.0%
CGTCAATAGAAATGCTTGGC+CGG + chr4_1:58118786-58118805 Msa0559100:CDS 45.0%
GTCAATAGAAATGCTTGGCC+GGG + chr4_1:58118787-58118806 Msa0559100:CDS 45.0%
TCAATAGAAATGCTTGGCCG+GGG + chr4_1:58118788-58118807 Msa0559100:CDS 45.0%
TTTGTTCCAACTCAATGCCC+CGG - chr4_1:58118808-58118827 None:intergenic 45.0%
GAATCACCTTGTAGCCATCA+AGG - chr4_1:58119043-58119062 None:intergenic 45.0%
CAATCCACTTCACTTCCATG+TGG - chr4_1:58119483-58119502 None:intergenic 45.0%
CAGTAAGCCATGTCTACGTA+AGG - chr4_1:58119509-58119528 None:intergenic 45.0%
CTTACGTAGACATGGCTTAC+TGG + chr4_1:58119507-58119526 Msa0559100:intron 45.0%
CTGGTCTACCCATCATTGTA+TGG - chr4_1:58119677-58119696 None:intergenic 45.0%
CAGACTCTCCAGATCTCAAA+GGG + chr4_1:58119694-58119713 Msa0559100:CDS 45.0%
!! GGTATCATCCCTTTGAGATC+TGG - chr4_1:58119705-58119724 None:intergenic 45.0%
! CTTTAAGAGACTGACTGGTC+TGG - chr4_1:58119749-58119768 None:intergenic 45.0%
! CTGGTCTTTAAGAGACTGAC+TGG - chr4_1:58119754-58119773 None:intergenic 45.0%
CAGTCAGTCTCTTAAAGACC+AGG + chr4_1:58119752-58119771 Msa0559100:CDS 45.0%
! GCATTTTGTAATTCCAGCCC+TGG - chr4_1:58119773-58119792 None:intergenic 45.0%
GGGCTGGAATTACAAAATGC+AGG + chr4_1:58119773-58119792 Msa0559100:CDS 45.0%
GGCACTACAAACATCGACAA+TGG - chr4_1:58120040-58120059 None:intergenic 45.0%
CATTACCCTCTTGTGTCTTC+AGG + chr4_1:58120394-58120413 Msa0559100:intron 45.0%
CATTGACCTGAAGACACAAG+AGG - chr4_1:58120403-58120422 None:intergenic 45.0%
CTCTTGTGTCTTCAGGTCAA+TGG + chr4_1:58120401-58120420 Msa0559100:intron 45.0%
TGCGCAAAGTAACGACAAAG+TGG - chr4_1:58120461-58120480 None:intergenic 45.0%
! GTCGTTACTTTGCGCATATG+TGG + chr4_1:58120465-58120484 Msa0559100:CDS 45.0%
GCGCATATGTGGTATAAACG+AGG + chr4_1:58120476-58120495 Msa0559100:CDS 45.0%
CACTTCCAGCCAAATCAATC+AGG - chr4_1:58120612-58120631 None:intergenic 45.0%
GGAACGTTTGAAGGAAACTC+AGG + chr4_1:58120660-58120679 Msa0559100:CDS 45.0%
TGCTCAAACAGGAGAGACTT+TGG - chr4_1:58120796-58120815 None:intergenic 45.0%
GTCACTCCCTTCAGAGAATA+TGG + chr4_1:58121220-58121239 Msa0559100:intron 45.0%
GATTGCAGCCATGTCTTGAA+GGG + chr4_1:58121408-58121427 Msa0559100:intron 45.0%
ATTGCAGCCATGTCTTGAAG+GGG + chr4_1:58121409-58121428 Msa0559100:intron 45.0%
TTGGAATCCCCTTCAAGACA+TGG - chr4_1:58121419-58121438 None:intergenic 45.0%
!! AAAAAAAAAAAAAATCATAT+TGG - chr4_1:58117533-58117552 None:intergenic 5.0%
AAACAGCGCTGCTGTGTTTG+GGG - chr4_1:58115809-58115828 None:intergenic 50.0%
GAAACAGCGCTGCTGTGTTT+GGG - chr4_1:58115810-58115829 None:intergenic 50.0%
GGTGGAGTTAGAAGAGAAGG+GGG - chr4_1:58115870-58115889 None:intergenic 50.0%
GGAGGTGGAGTTAGAAGAGA+AGG - chr4_1:58115873-58115892 None:intergenic 50.0%
TGGTGAGAAGGTAGGGTTTG+CGG - chr4_1:58115894-58115913 None:intergenic 50.0%
AGGACGATGGTGAGAAGGTA+GGG - chr4_1:58115901-58115920 None:intergenic 50.0%
!! TACCAGTTGACGGATTCAGG+AGG - chr4_1:58115921-58115940 None:intergenic 50.0%
!! TCGTACCAGTTGACGGATTC+AGG - chr4_1:58115924-58115943 None:intergenic 50.0%
TGGCTTCTCGGAATCAGAAC+CGG + chr4_1:58116029-58116048 Msa0559100:CDS 50.0%
!! TAGAGCGCCGTTAACTGCAA+TGG + chr4_1:58116221-58116240 Msa0559100:CDS 50.0%
! CTAACGCGGAGAGACTTGTT+TGG + chr4_1:58116974-58116993 Msa0559100:intron 50.0%
GAGTTGCTAGGCAAGAGCAA+TGG - chr4_1:58117695-58117714 None:intergenic 50.0%
GGTGAAAACGTCATGCTGAG+AGG - chr4_1:58118994-58119013 None:intergenic 50.0%
ATCTGTCATGAGACGCCACA+TGG + chr4_1:58119465-58119484 Msa0559100:intron 50.0%
! GCTTATGGACAAACGGGTTC+AGG + chr4_1:58119645-58119664 Msa0559100:CDS 50.0%
!! CCTTTGAGATCTGGAGAGTC+TGG - chr4_1:58119696-58119715 None:intergenic 50.0%
CCAGACTCTCCAGATCTCAA+AGG + chr4_1:58119693-58119712 Msa0559100:CDS 50.0%
AGTCTCTTAAAGACCAGGGC+TGG + chr4_1:58119757-58119776 Msa0559100:CDS 50.0%
GAGGAGGGAGGAAATCTCAT+CGG - chr4_1:58120061-58120080 None:intergenic 50.0%
GATTTCCTCCCTCCTCCAAA+AGG + chr4_1:58120065-58120084 Msa0559100:CDS 50.0%
!! TGATTTGGGCAGCCTTTTGG+AGG - chr4_1:58120080-58120099 None:intergenic 50.0%
TCCAAAAGGCTGCCCAAATC+AGG + chr4_1:58120079-58120098 Msa0559100:CDS 50.0%
!!! ACCTGATTTGGGCAGCCTTT+TGG - chr4_1:58120083-58120102 None:intergenic 50.0%
TTCCTTCAAACGTTCCCCAG+TGG - chr4_1:58120656-58120675 None:intergenic 50.0%
GGATTGCAGCCATGTCTTGA+AGG + chr4_1:58121407-58121426 Msa0559100:intron 50.0%
GGAAACAGCGCTGCTGTGTT+TGG - chr4_1:58115811-58115830 None:intergenic 55.0%
TGAGAAGGTAGGGTTTGCGG+AGG - chr4_1:58115891-58115910 None:intergenic 55.0%
GAGGACGATGGTGAGAAGGT+AGG - chr4_1:58115902-58115921 None:intergenic 55.0%
TCAGGAGGACGATGGTGAGA+AGG - chr4_1:58115906-58115925 None:intergenic 55.0%
!! TGACGGATTCAGGAGGACGA+TGG - chr4_1:58115914-58115933 None:intergenic 55.0%
GTCCTCCTGAATCCGTCAAC+TGG + chr4_1:58115916-58115935 Msa0559100:five_prime_UTR 55.0%
!!! TGGAGTGGTTTTGAGGAGGC+CGG - chr4_1:58116051-58116070 None:intergenic 55.0%
TGCCTAGCAACTCTCTCCAC+TGG + chr4_1:58117702-58117721 Msa0559100:intron 55.0%
GCCTAGCAACTCTCTCCACT+GGG + chr4_1:58117703-58117722 Msa0559100:intron 55.0%
GATGATCGCGATCGCCTACA+AGG + chr4_1:58117976-58117995 Msa0559100:CDS 55.0%
!! TTCTGGGGCTTCTGGCTAGA+TGG + chr4_1:58118443-58118462 Msa0559100:intron 55.0%
! CTGGTACAGAGTGCCCTTGA+TGG + chr4_1:58119026-58119045 Msa0559100:CDS 55.0%
! GAGTGCCCTTGATGGCTACA+AGG + chr4_1:58119034-58119053 Msa0559100:CDS 55.0%
! TTTTCTGTGTCTGCGCCCTG+CGG + chr4_1:58119273-58119292 Msa0559100:intron 55.0%
GACGCCACATGGAAGTGAAG+TGG + chr4_1:58119476-58119495 Msa0559100:intron 55.0%
!! TTGGGCAGCCTTTTGGAGGA+GGG - chr4_1:58120076-58120095 None:intergenic 55.0%
!! TTTGGGCAGCCTTTTGGAGG+AGG - chr4_1:58120077-58120096 None:intergenic 55.0%
TTTCAAGGAGTGGGGCCACT+GGG + chr4_1:58120638-58120657 Msa0559100:CDS 55.0%
AGCGCTGCTGTGTTTGGGGA+GGG - chr4_1:58115805-58115824 None:intergenic 60.0%
!! TGGGATTGGTGGCTCGGTGA+AGG - chr4_1:58115832-58115851 None:intergenic 60.0%
GAAGGTAGGGTTTGCGGAGG+TGG - chr4_1:58115888-58115907 None:intergenic 60.0%
GCCCAGTGGAGAGAGTTGCT+AGG - chr4_1:58117707-58117726 None:intergenic 60.0%
! AGGCAGAAGTGCAGACCGCA+GGG - chr4_1:58119291-58119310 None:intergenic 60.0%
! AAGGCAGAAGTGCAGACCGC+AGG - chr4_1:58119292-58119311 None:intergenic 60.0%
CTTTCAAGGAGTGGGGCCAC+TGG + chr4_1:58120637-58120656 Msa0559100:CDS 60.0%
TTCAAGGAGTGGGGCCACTG+GGG + chr4_1:58120639-58120658 Msa0559100:CDS 60.0%
GGCCACTGGGGAACGTTTGA+AGG + chr4_1:58120651-58120670 Msa0559100:CDS 60.0%
GCGCTGCTGTGTTTGGGGAG+GGG - chr4_1:58115804-58115823 None:intergenic 65.0%
CAGCGCTGCTGTGTTTGGGG+AGG - chr4_1:58115806-58115825 None:intergenic 65.0%
!! GCTTGGCCGGGGCATTGAGT+TGG + chr4_1:58118799-58118818 Msa0559100:CDS 65.0%
!! GGCAGCCTTTTGGAGGAGGG+AGG - chr4_1:58120073-58120092 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 58115791 58121697 58115791 ID=Msa0559100;Name=Msa0559100
chr4_1 mRNA 58115791 58121697 58115791 ID=Msa0559100-mRNA-1;Parent=Msa0559100;Name=Msa0559100-mRNA-1;_AED=0.08;_eAED=0.08;_QI=147|0.86|0.87|1|0.86|0.87|16|120|638
chr4_1 exon 58115791 58115937 58115791 ID=Msa0559100-mRNA-1:exon:17692;Parent=Msa0559100-mRNA-1
chr4_1 exon 58116028 58116072 58116028 ID=Msa0559100-mRNA-1:exon:17693;Parent=Msa0559100-mRNA-1
chr4_1 exon 58116171 58116266 58116171 ID=Msa0559100-mRNA-1:exon:17694;Parent=Msa0559100-mRNA-1
chr4_1 exon 58116780 58116903 58116780 ID=Msa0559100-mRNA-1:exon:17695;Parent=Msa0559100-mRNA-1
chr4_1 exon 58117359 58117519 58117359 ID=Msa0559100-mRNA-1:exon:17696;Parent=Msa0559100-mRNA-1
chr4_1 exon 58117913 58118101 58117913 ID=Msa0559100-mRNA-1:exon:17697;Parent=Msa0559100-mRNA-1
chr4_1 exon 58118205 58118279 58118205 ID=Msa0559100-mRNA-1:exon:17698;Parent=Msa0559100-mRNA-1
chr4_1 exon 58118462 58118608 58118462 ID=Msa0559100-mRNA-1:exon:17699;Parent=Msa0559100-mRNA-1
chr4_1 exon 58118698 58118830 58118698 ID=Msa0559100-mRNA-1:exon:17700;Parent=Msa0559100-mRNA-1
chr4_1 exon 58118946 58119055 58118946 ID=Msa0559100-mRNA-1:exon:17701;Parent=Msa0559100-mRNA-1
chr4_1 exon 58119633 58119794 58119633 ID=Msa0559100-mRNA-1:exon:17702;Parent=Msa0559100-mRNA-1
chr4_1 exon 58119880 58120100 58119880 ID=Msa0559100-mRNA-1:exon:17703;Parent=Msa0559100-mRNA-1
chr4_1 exon 58120416 58120497 58120416 ID=Msa0559100-mRNA-1:exon:17704;Parent=Msa0559100-mRNA-1
chr4_1 exon 58120577 58120681 58120577 ID=Msa0559100-mRNA-1:exon:17705;Parent=Msa0559100-mRNA-1
chr4_1 exon 58120785 58120889 58120785 ID=Msa0559100-mRNA-1:exon:17706;Parent=Msa0559100-mRNA-1
chr4_1 exon 58121416 58121697 58121416 ID=Msa0559100-mRNA-1:exon:17707;Parent=Msa0559100-mRNA-1
chr4_1 five_prime_UTR 58115791 58115937 58115791 ID=Msa0559100-mRNA-1:five_prime_utr;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58116028 58116072 58116028 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58116171 58116266 58116171 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58116780 58116903 58116780 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58117359 58117519 58117359 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58117913 58118101 58117913 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58118205 58118279 58118205 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58118462 58118608 58118462 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58118698 58118830 58118698 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58118946 58119055 58118946 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58119633 58119794 58119633 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58119880 58120100 58119880 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58120416 58120497 58120416 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58120577 58120681 58120577 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58120785 58120889 58120785 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 CDS 58121416 58121577 58121416 ID=Msa0559100-mRNA-1:cds;Parent=Msa0559100-mRNA-1
chr4_1 three_prime_UTR 58121578 58121697 58121578 ID=Msa0559100-mRNA-1:three_prime_utr;Parent=Msa0559100-mRNA-1
Gene Sequence

>Msa0559100

ATGGCTTCTCGGAATCAGAACCGGCCTCCTCAAAACCACTCCAATGTTGGATCTGAAGAGATGGAAAGACAAAGAGTGTCTGGTAGAGCTAAAGCTAGAGCGCCGTTAACTGCAATGGTGAACAACGCTACTGCAAGTAATAAAAAAATGGAGCAGATGGTGGATCTTATTAAGCGGCTTAAGCTTTGTGTTCAATGGTGCGCCAACAAGATTGAAACGCTTCATTCTGAAGTTGAGTCTGCTGTTAAGAAGTGTTCTGATACTGAGATTGAGATGAAAAATAAGACCGAGGAGCTTCAATCAGATCTCAATTCAGCTAACGAGGCTTATAGAAGACTTGAAACAGAGAAATCAATCATTGTTGAGAGCCTTAATGATACAAGAGATCTTAATAAGGAATTGCAGGATCGATTGAAATCTGTTAAAGATTCTCAGAGTGAAGCTATAAAGCATAAAGAAATGTTCCGCGAAGAACTAAAAAAAATTACAGATGATCGCGATCGCCTACAAGGAAAATTAAATGATGTAATGTTAGAACGGGAAAAATACATAAAATTTAAATATGAAACATACTCAAAATTGGATAAATTGGCAAGTAAAACAGAGGCACTTGAGGAGACTTGTTCCTCTCAAAAGGAGAAAATAAATATACTGGAGCAAAAGTTACATGCTGAAAGGGAGAAGTTAGAGATGGCTGATTTATCTGCTATGGAAACAAGAGCAACGTTTGAAGAGCAGAAAAGATTCATTCGTAAACTACAAGATCAATTGGCAGATAAAGAATTTCAAGTAGTTGAAGGAGAAAAGCTAAGGAAAAAACTGCACAACACTGTCTTGGAGCTGAAAGGAAATATTCGTGTGTTTTGTCGTGTGCGACCTTTACTACGAGACCGTTCAGAAACGAAAACGGTTGTTTATTACCCTACGTCAATAGAAATGCTTGGCCGGGGCATTGAGTTGGAACAAAATGGACAGAAACAGCTTTTTACATTTGACAAGGTGTTTAATCATGACGCCTCTCAGCATGACGTTTTCACCGAAATATCACAACTGGTACAGAGTGCCCTTGATGGCTACAAGGTATGCATTTTTGCTTATGGACAAACGGGTTCAGGAAAAACCCATACAATGATGGGTAGACCAGACTCTCCAGATCTCAAAGGGATGATACCACTTTCTTTAGAACAGATATTCCAGACCAGTCAGTCTCTTAAAGACCAGGGCTGGAATTACAAAATGCAGGCATCAGTATTGGAAATATATAATGAGACCATCAAAGATTTGTTATTGTCAAATCGGTCAAGTGGGATTGACCAAACACGAGCAGAAAATAGTGTTCATGGAAAACAGTACACTATTAGACATGACAAAAATGGAAACACACATGTTTTGGACCTCACCATTGTCGATGTTTGTAGTGCCGATGAGATTTCCTCCCTCCTCCAAAAGGCTGCCCAAATCAGGTCAATGGGAAGAACACAAATGAATGAACAATCATCAAGAAGCCACTTTGTCGTTACTTTGCGCATATGTGGTATAAACGAGAACACTGAACAACAAGTACAAGGTGTCTTAAACCTGATTGATTTGGCTGGAAGTGAAAGACTTTCAAGGAGTGGGGCCACTGGGGAACGTTTGAAGGAAACTCAGGCTATCAACCAAAGTCTCTCCTGTTTGAGCAATGTCATATTTGCTTTGGCAAAGAAAGAAGAGCATGTTCCTTTCAGGGATTCAAAACTTACACACCTACTTCAGCCATGTCTTGAAGGGGATTCCAAAACTTTGATGTTTGTCAACATCTCACCTGATCAATCTTCAATTGACGAGTCACTTTGCTCTCTTCGATTTGCGTCTAGAGTCAATGCTGTGAAATTGGGGATTCACAATGTCAGACCTAGACATCCACTCAATGTTTAG

Protein sequence

>Msa0559100

MASRNQNRPPQNHSNVGSEEMERQRVSGRAKARAPLTAMVNNATASNKKMEQMVDLIKRLKLCVQWCANKIETLHSEVESAVKKCSDTEIEMKNKTEELQSDLNSANEAYRRLETEKSIIVESLNDTRDLNKELQDRLKSVKDSQSEAIKHKEMFREELKKITDDRDRLQGKLNDVMLEREKYIKFKYETYSKLDKLASKTEALEETCSSQKEKINILEQKLHAEREKLEMADLSAMETRATFEEQKRFIRKLQDQLADKEFQVVEGEKLRKKLHNTVLELKGNIRVFCRVRPLLRDRSETKTVVYYPTSIEMLGRGIELEQNGQKQLFTFDKVFNHDASQHDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPDSPDLKGMIPLSLEQIFQTSQSLKDQGWNYKMQASVLEIYNETIKDLLLSNRSSGIDQTRAENSVHGKQYTIRHDKNGNTHVLDLTIVDVCSADEISSLLQKAAQIRSMGRTQMNEQSSRSHFVVTLRICGINENTEQQVQGVLNLIDLAGSERLSRSGATGERLKETQAINQSLSCLSNVIFALAKKEEHVPFRDSKLTHLLQPCLEGDSKTLMFVNISPDQSSIDESLCSLRFASRVNAVKLGIHNVRPRHPLNV*