AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613630 MtrunA17_Chr4g0049011 97.800 591 13 0 48 638 43 633 0.0 1194
Msa0613630 MtrunA17_Chr2g0280421 65.419 561 173 5 76 627 222 770 0.0 722
Msa0613630 MtrunA17_Chr2g0280421 28.938 273 123 8 1 210 1 265 1.77e-13 73.9
Msa0613630 MtrunA17_Chr4g0042061 60.401 548 196 5 99 637 247 782 0.0 639
Msa0613630 MtrunA17_Chr2g0319271 60.219 548 198 4 99 637 214 750 0.0 638
Msa0613630 MtrunA17_Chr7g0272871 42.782 381 188 8 256 626 94 454 1.45e-84 280
Msa0613630 MtrunA17_Chr2g0312631 43.207 368 195 4 259 626 359 712 6.56e-84 284
Msa0613630 MtrunA17_Chr7g0271961 42.779 367 177 7 272 630 389 730 9.18e-83 280
Msa0613630 MtrunA17_Chr1g0191851 40.741 378 200 6 256 626 114 474 1.72e-82 276
Msa0613630 MtrunA17_Chr1g0192481 42.276 369 182 9 272 630 46 393 8.43e-82 269
Msa0613630 MtrunA17_Chr5g0411971 36.492 496 259 10 168 626 248 724 6.92e-81 276
Msa0613630 MtrunA17_Chr5g0421591 38.596 456 238 9 193 625 262 698 8.36e-81 273
Msa0613630 MtrunA17_Chr5g0407791 36.902 439 239 9 193 623 802 1210 8.77e-79 272
Msa0613630 MtrunA17_Chr5g0421521 42.328 378 197 6 250 625 340 698 8.82e-79 269
Msa0613630 MtrunA17_Chr1g0195111 40.599 367 190 7 272 630 384 730 1.31e-78 269
Msa0613630 MtrunA17_Chr8g0369881 36.404 456 247 11 189 623 763 1196 2.11e-78 271
Msa0613630 MtrunA17_Chr3g0102921 41.713 362 198 8 272 626 426 781 8.71e-75 259
Msa0613630 MtrunA17_Chr7g0257301 38.318 428 229 13 227 626 326 746 2.20e-74 258
Msa0613630 MtrunA17_Chr5g0447041 38.974 390 198 7 272 626 422 806 1.27e-73 257
Msa0613630 MtrunA17_Chr1g0191181 36.554 383 223 6 245 624 49 414 6.31e-67 230
Msa0613630 MtrunA17_Chr2g0327581 36.915 363 207 9 275 624 39 392 1.33e-56 207
Msa0613630 MtrunA17_Chr3g0122121 37.978 366 174 11 285 624 99 437 3.89e-56 206
Msa0613630 MtrunA17_Chr1g0178411 37.778 360 194 11 284 624 13 361 3.04e-55 203
Msa0613630 MtrunA17_Chr7g0266631 37.500 360 195 11 284 624 9 357 5.04e-55 202
Msa0613630 MtrunA17_Chr8g0377731 37.368 380 185 11 270 624 40 391 1.41e-54 201
Msa0613630 MtrunA17_Chr4g0045381 36.957 368 176 10 284 624 193 531 2.44e-53 198
Msa0613630 MtrunA17_Chr1g0182151 36.932 352 204 8 284 624 54 398 6.45e-53 196
Msa0613630 MtrunA17_Chr2g0322291 40.379 317 148 8 329 624 130 426 3.36e-52 194
Msa0613630 MtrunA17_Chr4g0069141 35.000 380 185 10 275 624 144 491 8.93e-51 190
Msa0613630 MtrunA17_Chr5g0427481 35.530 349 208 7 285 624 18 358 9.53e-51 190
Msa0613630 MtrunA17_Chr3g0134191 34.771 371 196 10 285 624 9 364 3.39e-50 188
Msa0613630 MtrunA17_Chr8g0367581 35.833 360 204 8 271 629 133 466 4.03e-50 188
Msa0613630 MtrunA17_Chr1g0193221 35.530 349 183 9 285 620 4 323 1.40e-48 183
Msa0613630 MtrunA17_Chr1g0153061 35.054 368 199 12 285 624 9 364 2.05e-48 182
Msa0613630 MtrunA17_Chr4g0053211 34.409 372 202 12 284 624 12 372 7.44e-48 181
Msa0613630 MtrunA17_Chr3g0132921 34.270 356 204 9 284 624 9 349 1.29e-47 175
Msa0613630 MtrunA17_Chr2g0307481 35.227 352 193 9 285 624 69 397 6.02e-47 175
Msa0613630 MtrunA17_Chr1g0152231 35.065 308 167 6 329 623 46 333 2.87e-45 172
Msa0613630 MtrunA17_Chr4g0035661 35.447 347 192 11 284 625 89 408 5.63e-44 169
Msa0613630 MtrunA17_Chr4g0062291 35.376 359 192 10 285 627 124 458 1.67e-43 166
Msa0613630 MtrunA17_Chr3g0145071 35.817 349 188 12 284 625 99 418 2.65e-43 167
Msa0613630 MtrunA17_Chr8g0386891 54.676 139 63 0 488 626 21 159 7.37e-42 156
Msa0613630 MtrunA17_Chr7g0269681 45.506 178 97 0 453 630 23 200 1.44e-41 157
Msa0613630 MtrunA17_Chr6g0483701 34.006 347 196 7 285 623 31 352 1.22e-40 159
Msa0613630 MtrunA17_Chr6g0484501 48.000 175 91 0 453 627 16 190 1.62e-40 148
Msa0613630 MtrunA17_Chr4g0070001 32.308 390 207 13 269 634 125 481 5.29e-40 157
Msa0613630 MtrunA17_Chr7g0238581 32.378 349 195 10 285 619 26 347 1.55e-39 154
Msa0613630 MtrunA17_Chr7g0258991 33.333 351 200 10 282 625 71 394 2.58e-39 155
Msa0613630 MtrunA17_Chr3g0142261 34.060 367 179 12 285 623 20 351 3.53e-39 155
Msa0613630 MtrunA17_Chr5g0398521 30.133 375 210 10 281 625 54 406 5.84e-39 154
Msa0613630 MtrunA17_Chr5g0445211 32.884 371 199 13 277 624 67 410 8.08e-39 154
Msa0613630 MtrunA17_Chr3g0101021 32.808 317 177 8 329 624 108 409 1.33e-38 153
Msa0613630 MtrunA17_Chr4g0036001 31.044 364 215 8 264 617 3 340 5.80e-38 150
Msa0613630 MtrunA17_Chr6g0485471 34.462 325 180 10 318 637 154 450 4.75e-37 147
Msa0613630 MtrunA17_Chr8g0390991 51.923 156 75 0 471 626 4 159 1.41e-36 144
Msa0613630 MtrunA17_Chr8g0372171 32.113 355 184 11 285 618 20 338 5.40e-36 145
Msa0613630 MtrunA17_Chr7g0245931 30.352 369 210 8 281 624 49 395 5.43e-36 144
Msa0613630 MtrunA17_Chr5g0405181 31.624 351 191 9 285 618 21 339 9.61e-36 144
Msa0613630 MtrunA17_Chr2g0331761 31.847 314 183 6 318 626 224 511 7.20e-35 140
Msa0613630 MtrunA17_Chr8g0386901 42.289 201 100 7 240 432 440 632 2.79e-32 132
Msa0613630 MtrunA17_Chr8g0390981 38.532 218 125 6 220 434 454 665 4.02e-32 132
Msa0613630 MtrunA17_Chr1g0187411 31.856 361 211 12 285 628 131 473 6.09e-32 132
Msa0613630 MtrunA17_Chr2g0295881 31.481 324 177 8 318 623 237 533 3.97e-31 129
Msa0613630 MtrunA17_Chr6g0484511 40.936 171 85 5 272 434 277 439 2.95e-30 124
Msa0613630 MtrunA17_Chr4g0067421 30.031 323 181 7 318 623 245 539 4.19e-30 126
Msa0613630 MtrunA17_Chr7g0269691 40.854 164 90 5 272 432 388 547 1.35e-28 120
Msa0613630 MtrunA17_Chr3g0142841 29.167 312 172 11 331 625 145 424 2.06e-20 96.3
Msa0613630 MtrunA17_Chr6g0470541 26.235 324 205 10 285 602 6 301 1.82e-17 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613630 AT4G05190.1 63.363 565 190 4 76 627 213 773 0.0 701
Msa0613630 AT4G05190.2 63.363 565 190 4 76 627 200 760 0.0 699
Msa0613630 AT4G21270.1 63.345 562 195 3 76 627 216 776 0.0 697
Msa0613630 AT4G27180.1 59.232 547 195 7 99 632 206 737 0.0 619
Msa0613630 AT4G27180.2 59.232 547 195 7 99 632 206 737 0.0 619
Msa0613630 AT5G54670.3 58.000 550 201 8 99 638 155 684 0.0 607
Msa0613630 AT5G54670.1 58.000 550 201 8 99 638 215 744 0.0 607
Msa0613630 AT5G54670.2 58.000 550 201 8 99 638 215 744 0.0 607
Msa0613630 AT1G72250.1 46.175 366 180 5 263 626 470 820 3.44e-91 306
Msa0613630 AT1G72250.2 46.175 366 180 5 263 626 479 829 3.69e-91 306
Msa0613630 AT1G72250.4 46.175 366 180 5 263 626 490 840 4.36e-91 306
Msa0613630 AT1G72250.3 46.175 366 180 5 263 626 491 841 4.40e-91 306
Msa0613630 AT1G73860.2 35.880 602 280 15 70 626 218 758 5.06e-88 294
Msa0613630 AT1G73860.1 35.880 602 280 15 70 626 301 841 1.35e-87 295
Msa0613630 AT5G27550.2 43.264 386 196 6 245 626 93 459 3.03e-86 286
Msa0613630 AT5G27550.1 43.264 386 196 6 245 626 93 459 3.03e-86 286
Msa0613630 AT2G22610.2 42.440 377 200 3 250 626 383 742 4.18e-85 288
Msa0613630 AT2G22610.3 42.440 377 200 3 250 626 384 743 4.40e-85 288
Msa0613630 AT2G22610.1 42.440 377 200 3 250 626 383 742 5.01e-85 288
Msa0613630 AT1G18410.5 45.055 364 163 8 272 626 467 802 4.07e-83 281
Msa0613630 AT1G18410.3 44.687 367 168 8 272 626 477 820 9.34e-83 281
Msa0613630 AT1G18410.2 44.687 367 168 8 272 626 477 820 9.34e-83 281
Msa0613630 AT1G18410.1 45.055 364 163 8 272 626 620 955 1.08e-81 280
Msa0613630 AT1G18410.4 44.687 367 168 8 272 626 620 963 2.43e-81 279
Msa0613630 AT1G63640.5 42.132 394 202 8 240 626 419 793 5.70e-81 277
Msa0613630 AT5G41310.1 42.175 377 171 7 258 626 398 735 6.34e-81 275
Msa0613630 AT1G63640.2 42.199 391 199 8 240 626 429 796 7.12e-81 276
Msa0613630 AT1G63640.1 42.132 394 202 8 240 626 429 803 8.71e-81 276
Msa0613630 AT1G63640.4 42.132 394 202 8 240 626 429 803 8.71e-81 276
Msa0613630 AT1G63640.3 42.132 394 202 8 240 626 429 803 8.98e-81 276
Msa0613630 AT1G09170.4 38.498 426 241 8 210 630 358 767 1.02e-79 270
Msa0613630 AT1G09170.3 38.498 426 241 8 210 630 358 767 1.39e-79 269
Msa0613630 AT1G09170.7 38.498 426 241 8 210 630 358 767 1.39e-79 269
Msa0613630 AT2G47500.2 41.713 362 191 5 272 630 387 731 2.10e-79 271
Msa0613630 AT2G47500.1 41.713 362 191 5 272 630 387 731 2.86e-79 271
Msa0613630 AT1G09170.2 38.498 426 241 8 210 630 358 767 3.36e-79 269
Msa0613630 AT1G09170.5 38.498 426 241 8 210 630 358 767 1.23e-78 270
Msa0613630 AT5G27000.1 41.509 371 181 7 272 630 382 728 2.69e-77 266
Msa0613630 AT5G65930.1 37.071 437 249 8 189 623 796 1208 2.86e-77 268
Msa0613630 AT5G65930.2 37.071 437 249 8 189 623 797 1209 3.33e-77 268
Msa0613630 AT5G65930.3 36.697 436 252 7 189 623 803 1215 3.99e-77 268
Msa0613630 AT3G44730.1 40.166 361 189 7 274 626 367 708 1.55e-76 265
Msa0613630 AT3G44730.4 40.166 361 189 7 274 626 367 708 1.55e-76 265
Msa0613630 AT3G44730.2 40.166 361 189 7 274 626 412 753 1.77e-76 265
Msa0613630 AT3G44730.3 40.166 361 189 7 274 626 412 753 1.77e-76 265
Msa0613630 AT1G55550.1 38.542 384 203 7 250 626 57 414 5.35e-76 260
Msa0613630 AT3G10310.1 39.753 405 208 11 237 626 309 692 7.77e-75 258
Msa0613630 AT3G10310.2 39.753 405 208 11 237 626 309 692 8.45e-75 258
Msa0613630 AT5G27950.1 37.135 377 217 7 250 623 45 404 1.36e-67 233
Msa0613630 AT1G09170.1 35.765 425 218 8 210 630 358 731 3.03e-67 238
Msa0613630 AT1G09170.6 37.500 384 219 8 210 588 358 725 1.01e-65 229
Msa0613630 AT1G09170.8 37.500 384 219 8 210 588 358 725 1.01e-65 229
Msa0613630 AT3G45850.2 37.222 360 191 9 284 624 55 398 1.03e-56 207
Msa0613630 AT3G45850.1 37.222 360 191 9 284 624 55 398 1.03e-56 207
Msa0613630 AT2G37420.1 37.288 354 199 9 284 624 48 391 1.78e-55 204
Msa0613630 AT2G37420.2 37.288 354 199 9 284 624 48 391 1.78e-55 204
Msa0613630 AT2G36200.1 38.333 360 192 11 284 624 12 360 6.44e-55 202
Msa0613630 AT2G36200.2 38.333 360 192 11 284 624 12 360 1.17e-54 201
Msa0613630 AT2G28620.3 37.360 356 196 10 284 624 50 393 1.54e-54 201
Msa0613630 AT2G28620.2 37.360 356 196 10 284 624 50 393 1.54e-54 201
Msa0613630 AT2G28620.1 37.360 356 196 10 284 624 50 393 1.58e-54 201
Msa0613630 AT3G19050.1 37.017 362 184 10 284 624 193 531 2.58e-52 195
Msa0613630 AT3G44050.1 40.220 363 171 13 284 624 93 431 2.88e-52 195
Msa0613630 AT4G14150.1 38.199 322 157 8 327 624 124 427 8.53e-51 191
Msa0613630 AT3G23670.2 37.461 323 160 8 326 624 128 432 2.22e-49 186
Msa0613630 AT3G23670.1 37.461 323 160 8 326 624 128 432 2.48e-49 186
Msa0613630 AT3G17360.3 35.422 367 183 9 284 624 168 506 1.10e-48 184
Msa0613630 AT3G17360.2 35.422 367 183 9 284 624 168 506 1.21e-48 184
Msa0613630 AT3G17360.1 35.422 367 183 9 284 624 168 506 1.30e-48 184
Msa0613630 AT3G50240.2 34.605 367 202 10 285 624 26 381 2.12e-48 182
Msa0613630 AT3G50240.4 34.605 367 202 10 285 624 26 381 2.47e-48 183
Msa0613630 AT3G50240.1 34.605 367 202 10 285 624 26 381 2.68e-48 182
Msa0613630 AT5G65460.2 30.254 433 258 8 196 620 53 449 3.15e-48 182
Msa0613630 AT5G65460.1 30.088 452 270 9 177 620 36 449 3.78e-48 182
Msa0613630 AT5G65460.6 30.324 432 257 8 196 619 53 448 3.82e-48 182
Msa0613630 AT5G65460.4 30.088 452 270 9 177 620 36 449 4.27e-48 182
Msa0613630 AT3G10180.1 35.244 349 185 7 285 620 4 324 6.30e-48 182
Msa0613630 AT3G10180.2 35.244 349 185 7 285 620 4 324 6.43e-48 182
Msa0613630 AT5G60930.1 37.618 319 174 10 329 624 45 361 2.55e-47 180
Msa0613630 AT5G60930.2 37.618 319 174 10 329 624 45 361 3.97e-47 179
Msa0613630 AT5G60930.3 37.618 319 174 10 329 624 45 361 4.05e-47 179
Msa0613630 AT5G65460.3 29.605 456 274 9 177 620 36 456 1.11e-46 178
Msa0613630 AT4G39050.1 35.616 365 199 12 268 625 82 417 2.12e-46 177
Msa0613630 AT2G21380.2 36.389 360 185 14 277 625 97 423 2.67e-46 177
Msa0613630 AT2G21380.1 36.389 360 185 14 277 625 97 423 2.67e-46 177
Msa0613630 AT5G47820.2 33.244 373 205 10 284 624 11 371 3.49e-45 173
Msa0613630 AT5G47820.1 33.244 373 205 10 284 624 11 371 3.49e-45 173
Msa0613630 AT1G59540.1 36.000 300 165 7 331 623 46 325 3.63e-45 172
Msa0613630 AT5G10470.1 29.929 421 253 8 214 620 61 453 9.49e-44 169
Msa0613630 AT5G10470.2 29.929 421 253 8 214 620 61 453 1.10e-43 169
Msa0613630 AT5G06670.2 33.616 354 201 11 279 625 61 387 2.03e-43 168
Msa0613630 AT5G06670.3 33.616 354 201 11 279 625 61 387 2.03e-43 168
Msa0613630 AT5G06670.8 33.616 354 201 11 279 625 61 387 3.21e-43 166
Msa0613630 AT5G06670.4 33.616 354 201 11 279 625 61 387 3.21e-43 166
Msa0613630 AT5G06670.7 33.616 354 201 11 279 625 61 387 3.21e-43 166
Msa0613630 AT5G06670.5 33.616 354 201 11 279 625 61 387 3.35e-43 166
Msa0613630 AT1G18550.1 36.213 301 165 7 329 624 204 482 5.11e-43 165
Msa0613630 AT1G21730.1 36.080 352 191 12 281 625 72 396 1.34e-42 165
Msa0613630 AT3G49650.1 34.402 343 198 7 290 627 29 349 1.66e-42 164
Msa0613630 AT5G06670.6 33.058 363 200 12 279 625 61 396 8.98e-42 163
Msa0613630 AT5G06670.1 33.058 363 200 12 279 625 61 396 8.98e-42 163
Msa0613630 AT3G63480.2 33.520 358 196 12 284 624 3 335 9.71e-42 157
Msa0613630 AT3G12020.4 33.705 359 204 10 274 625 59 390 4.38e-41 160
Msa0613630 AT3G12020.1 33.705 359 204 10 274 625 59 390 4.38e-41 160
Msa0613630 AT3G12020.3 33.705 359 204 10 274 625 59 390 1.06e-40 160
Msa0613630 AT3G12020.2 33.705 359 204 10 274 625 59 390 1.06e-40 160
Msa0613630 AT3G54870.3 32.923 325 175 9 323 625 144 447 1.88e-40 159
Msa0613630 AT3G54870.1 32.923 325 175 9 323 625 144 447 1.90e-40 159
Msa0613630 AT3G63480.1 33.611 360 197 12 284 624 3 339 2.04e-40 154
Msa0613630 AT3G54870.2 32.923 325 175 9 323 625 144 447 2.13e-40 159
Msa0613630 AT1G18370.1 33.987 306 171 6 329 628 78 358 2.96e-39 155
Msa0613630 AT1G12430.1 31.267 371 202 11 285 625 71 418 1.58e-38 153
Msa0613630 AT1G12430.2 31.267 371 202 11 285 625 71 418 1.67e-38 153
Msa0613630 AT3G50240.3 37.234 282 147 7 368 624 3 279 1.96e-38 152
Msa0613630 AT5G02370.1 30.252 357 188 8 284 619 20 336 8.20e-38 148
Msa0613630 AT4G38950.3 32.797 311 167 7 329 623 60 344 6.33e-37 148
Msa0613630 AT4G38950.5 32.797 311 167 7 329 623 60 344 6.33e-37 148
Msa0613630 AT4G38950.4 32.797 311 167 7 329 623 60 344 6.33e-37 148
Msa0613630 AT4G38950.1 32.797 311 167 7 329 623 60 344 6.33e-37 148
Msa0613630 AT4G38950.2 32.797 311 167 7 329 623 60 344 6.33e-37 148
Msa0613630 AT3G51150.2 33.238 349 188 10 285 618 18 336 7.43e-37 148
Msa0613630 AT3G51150.4 33.238 349 188 10 285 618 18 336 7.43e-37 148
Msa0613630 AT3G51150.3 33.238 349 188 10 285 618 18 336 7.43e-37 148
Msa0613630 AT3G43210.3 34.897 341 186 11 285 617 30 342 8.23e-37 147
Msa0613630 AT3G43210.5 34.897 341 186 11 285 617 30 342 8.23e-37 147
Msa0613630 AT3G43210.2 34.897 341 186 11 285 617 30 342 8.23e-37 147
Msa0613630 AT3G43210.4 34.897 341 186 11 285 617 30 342 8.23e-37 147
Msa0613630 AT3G43210.1 34.897 341 186 11 285 617 30 342 8.23e-37 147
Msa0613630 AT3G51150.1 33.238 349 188 10 285 618 18 336 8.64e-37 148
Msa0613630 AT1G01950.1 30.352 369 210 10 281 624 57 403 1.20e-35 144
Msa0613630 AT1G01950.2 30.352 369 210 10 281 624 57 403 1.23e-35 144
Msa0613630 AT4G14330.1 34.641 306 172 10 329 628 89 372 1.49e-35 144
Msa0613630 AT1G01950.3 30.352 369 210 10 281 624 57 403 1.61e-35 144
Msa0613630 AT5G66310.2 34.783 299 158 6 329 618 67 337 1.89e-35 144
Msa0613630 AT5G66310.3 34.783 299 158 6 329 618 67 337 1.89e-35 144
Msa0613630 AT5G66310.1 34.783 299 158 6 329 618 67 337 1.89e-35 144
Msa0613630 AT3G16060.1 32.484 314 181 7 318 626 208 495 8.15e-35 140
Msa0613630 AT5G27950.2 36.546 249 145 5 377 623 1 238 1.48e-34 137
Msa0613630 AT2G21300.2 30.623 369 210 12 264 617 3 340 1.66e-34 140
Msa0613630 AT2G21300.4 30.623 369 210 12 264 617 3 340 1.66e-34 140
Msa0613630 AT2G21300.3 30.623 369 210 12 264 617 3 340 1.66e-34 140
Msa0613630 AT2G21300.1 30.623 369 210 12 264 617 3 340 1.66e-34 140
Msa0613630 AT2G21300.5 30.623 369 210 12 264 617 3 340 1.66e-34 140
Msa0613630 AT4G24170.1 33.876 307 157 10 326 618 47 321 1.73e-34 140
Msa0613630 AT4G24170.2 33.876 307 157 10 326 618 47 321 1.73e-34 140
Msa0613630 AT3G20150.2 33.333 318 172 10 329 623 136 436 1.88e-34 140
Msa0613630 AT3G20150.1 33.333 318 172 10 329 623 136 436 1.94e-34 140
Msa0613630 AT1G59540.2 35.573 253 137 6 377 623 1 233 1.97e-32 134
Msa0613630 AT3G16630.2 29.917 361 203 9 285 623 194 526 5.16e-30 126
Msa0613630 AT3G16630.1 29.917 361 203 9 285 623 194 526 5.16e-30 126
Msa0613630 AT1G01950.4 31.206 282 153 7 364 624 1 262 6.00e-26 114
Msa0613630 AT5G42490.2 32.922 243 132 5 329 566 56 272 1.56e-22 103
Msa0613630 AT5G42490.1 32.922 243 132 5 329 566 56 272 1.67e-22 103
Msa0613630 AT3G51150.5 42.553 141 67 3 488 618 47 183 1.08e-20 97.4
Msa0613630 AT5G65460.5 30.476 210 124 3 411 619 14 202 9.48e-20 94.7
Msa0613630 AT5G23910.2 28.808 302 174 13 324 620 54 319 6.60e-19 91.7
Msa0613630 AT5G23910.1 28.808 302 174 13 324 620 50 315 6.74e-19 91.7
Msa0613630 AT1G20060.3 29.450 309 181 10 331 625 165 450 3.11e-17 86.7
Msa0613630 AT1G20060.4 29.450 309 181 10 331 625 165 450 3.63e-17 86.3
Msa0613630 AT1G20060.9 29.450 309 181 10 331 625 165 450 3.85e-17 86.3
Msa0613630 AT1G20060.8 29.450 309 181 10 331 625 165 450 3.89e-17 86.3
Msa0613630 AT1G20060.7 29.450 309 181 10 331 625 165 450 3.92e-17 86.3
Msa0613630 AT1G20060.2 29.450 309 181 10 331 625 165 450 4.22e-17 86.3
Msa0613630 AT1G20060.10 29.450 309 181 10 331 625 165 450 4.24e-17 86.3
Msa0613630 AT1G20060.6 29.450 309 181 10 331 625 165 450 4.32e-17 86.3
Msa0613630 AT1G20060.5 29.450 309 181 10 331 625 165 450 4.44e-17 85.9
Msa0613630 AT1G20060.1 31.651 218 118 9 331 540 165 359 6.60e-13 72.8

Find 140 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGCATGTTCCTTTC+AGG 0.194253 4_2:+62452541 Msa0613630:CDS
ATACTCAAAATTGGATAAAT+TGG 0.218313 4_2:+62449704 Msa0613630:CDS
TAGAGTCAATGCTGTGAAAT+TGG 0.225841 4_2:+62453214 Msa0613630:CDS
AAATGGAAACACACATGTTT+TGG 0.247585 4_2:+62451710 Msa0613630:CDS
AAACACAATAATACCTGATT+TGG 0.252458 4_2:-62451794 None:intergenic
GTTGACAAACATCAAAGTTT+TGG 0.254499 4_2:-62453135 None:intergenic
CCACTCAATGTTTAGAATCT+TGG 0.262112 4_2:+62453263 Msa0613630:exon
TAAGATCTCTTGTATCATTA+AGG 0.268393 4_2:-62449118 None:intergenic
ATATGAAACATACTCAAAAT+TGG 0.276205 4_2:+62449695 Msa0613630:CDS
ACCTGATTTGGGCAGCCTTT+TGG 0.295707 4_2:-62451782 None:intergenic
TGACAATAACAAATCTTTGA+TGG 0.318383 4_2:-62451610 None:intergenic
GCTTATGGACAAACAGGTTC+AGG 0.319847 4_2:+62451348 Msa0613630:CDS
CTGCACCAGTTGTGATATTT+CGG 0.332276 4_2:-62450657 None:intergenic
AAAGGAGAAAATAAATATAC+TGG 0.354702 4_2:+62449870 Msa0613630:CDS
AGAGTCAATGCTGTGAAATT+GGG 0.355203 4_2:+62453215 Msa0613630:CDS
CACTTCCAGCCAAATCAATC+AGG 0.357452 4_2:-62452312 None:intergenic
CGAGCAGAAAATAGTGTTCA+TGG 0.366475 4_2:+62451660 Msa0613630:CDS
GAGCAATGTCATATTTGCTT+TGG 0.367142 4_2:+62452512 Msa0613630:CDS
GGCATTGAGTTGGAACAAAA+TGG 0.370931 4_2:+62450455 Msa0613630:CDS
AGAGTGTAGAACGAAATAAT+TGG 0.372051 4_2:-62453376 None:intergenic
TGTCTTAAACCTGATTGATT+TGG 0.373703 4_2:+62452303 Msa0613630:CDS
GGGGTGTGATTTGTGAAATT+GGG 0.374727 4_2:-62447502 None:intergenic
GAAGGTAGGGTTTGCGGAGG+TGG 0.377448 4_2:-62447539 None:intergenic
ATGAAGCGTTTCAATCTTGT+TGG 0.379069 4_2:-62448495 None:intergenic
AAAGAATTTCAAGTAGTTGA+AGG 0.379952 4_2:+62450195 Msa0613630:CDS
TTGTTCACCATTGCAGTTAA+CGG 0.384857 4_2:-62447882 None:intergenic
TCCAAAAGGCTGCCCAAATC+AGG 0.391053 4_2:+62451781 Msa0613630:CDS
GTGATTTGTGAAATTGGGAT+TGG 0.395381 4_2:-62447497 None:intergenic
AAGATTTGTTATTGTCAAAT+CGG 0.396139 4_2:+62451616 Msa0613630:CDS
CTCTTGTGTCTTCAGGTCAA+TGG 0.401417 4_2:+62452104 Msa0613630:intron
TGATACAAGAGATCTTAATA+AGG 0.404932 4_2:+62449124 Msa0613630:CDS
AGATCTTAATAAGGAATTGC+AGG 0.409956 4_2:+62449133 Msa0613630:CDS
GGCTTAAGCTTTGTGTTCAA+TGG 0.411472 4_2:+62448468 Msa0613630:CDS
GTTAAGAAGTGTTCTGATAC+TGG 0.413284 4_2:+62448536 Msa0613630:CDS
CAGGCCTACCCATCATTGTA+TGG 0.417511 4_2:-62451377 None:intergenic
CTTTCAAGGAGTGGGGCCAC+TGG 0.419503 4_2:+62452340 Msa0613630:CDS
TCGTACCAGTTGACGGAGTC+AGG 0.425745 4_2:-62447575 None:intergenic
GGTATCATCCCTTTGAGATC+TGG 0.431597 4_2:-62451405 None:intergenic
ATGGAGAGACAAAGAGTGTC+TGG 0.432987 4_2:+62447840 Msa0613630:CDS
CCTTTGAGATCTGGAGAGTC+AGG 0.439610 4_2:-62451396 None:intergenic
GGCCACTGGGGAACGTTTGA+AGG 0.442182 4_2:+62452354 Msa0613630:CDS
AAATATGACATTGCTCAAAC+AGG 0.446159 4_2:-62452505 None:intergenic
TTTCAAGGAGTGGGGCCACT+GGG 0.447460 4_2:+62452341 Msa0613630:CDS
AACACAATAATACCTGATTT+GGG 0.450436 4_2:-62451793 None:intergenic
TGCTCAAACAGGAGAGACTT+TGG 0.452914 4_2:-62452494 None:intergenic
GATGGCTGATTTATCTGCTA+TGG 0.457746 4_2:+62450107 Msa0613630:intron
GTCTTCCTGACTCCGTCAAC+TGG 0.457850 4_2:+62447570 Msa0613630:five_prime_UTR
AAATGATGTCATGTTAGAAC+GGG 0.458801 4_2:+62449653 Msa0613630:CDS
CTGGAAGTGAAAGACTTTCA+AGG 0.460124 4_2:+62452326 Msa0613630:CDS
AGAAGAGCATGTTCCTTTCA+GGG 0.462036 4_2:+62452542 Msa0613630:CDS
TCTTGTGTCTTCAGGTCAAT+GGG 0.464776 4_2:+62452105 Msa0613630:intron
GTCGTTACTTTGCGCATATG+TGG 0.465467 4_2:+62452168 Msa0613630:CDS
TTTCACCGAAATATCACAAC+TGG 0.467691 4_2:+62450652 Msa0613630:CDS
GTCAATAGAAATGCTTGGCC+GGG 0.470648 4_2:+62450433 Msa0613630:CDS
CATGTTTCTTGTAGAAATAG+AGG 0.474231 4_2:+62453342 Msa0613630:three_prime_UTR
CGTCAATAGAAATGCTTGGC+CGG 0.476762 4_2:+62450432 Msa0613630:CDS
TGCTGAAAGGGAGAAGTTAG+AGG 0.476851 4_2:+62449906 Msa0613630:CDS
AAAACTTACACACCTACTTC+AGG 0.477645 4_2:+62452569 Msa0613630:CDS
GGAGACTTGTTCCTCTCAAA+AGG 0.477958 4_2:+62449852 Msa0613630:intron
TGGCTTCTCGGAATCAGAAC+CGG 0.478047 4_2:+62447682 Msa0613630:CDS
GAATTACCTTGTAGCCATCA+AGG 0.484630 4_2:-62450685 None:intergenic
TTAAACCTGATTGATTTGGC+TGG 0.484981 4_2:+62452307 Msa0613630:CDS
TCGTAAACTACAAGATCAAT+TGG 0.486302 4_2:+62450167 Msa0613630:CDS
ATTTGTGAAATTGGGATTGG+TGG 0.487553 4_2:-62447494 None:intergenic
ATATTACTAGGCATCAGTAT+TGG 0.491971 4_2:+62451572 Msa0613630:intron
GGATTGCAGCCATGTCTTGA+AGG 0.492427 4_2:+62453107 Msa0613630:intron
CTTTAAGAGACTGACTGGTC+TGG 0.494270 4_2:-62451449 None:intergenic
CTGGTGCAGAGTGCCCTTGA+TGG 0.494301 4_2:+62450671 Msa0613630:CDS
GGAGGTGGAGTTAGAAGAGA+AGG 0.497800 4_2:-62447524 None:intergenic
GCAAAAGTTACATGCTGAAA+GGG 0.498320 4_2:+62449894 Msa0613630:CDS
GCTTGGCCGGGGCATTGAGT+TGG 0.504578 4_2:+62450445 Msa0613630:CDS
TGGCGAGAAGGTAGGGTTTG+CGG 0.507641 4_2:-62447545 None:intergenic
AGTCTCTTAAAGACCAGGGC+TGG 0.508242 4_2:+62451460 Msa0613630:CDS
GTGAAAGACTTTCAAGGAGT+GGG 0.510340 4_2:+62452332 Msa0613630:CDS
TCGTCAATTGAAGATTGATC+AGG 0.511344 4_2:-62453164 None:intergenic
GAGGTGGAGTTAGAAGAGAA+GGG 0.519391 4_2:-62447523 None:intergenic
TGAAATTGGGATTGGTGGCT+CGG 0.521834 4_2:-62447489 None:intergenic
AAAACTGCACAACACTGTCT+TGG 0.526321 4_2:+62450233 Msa0613630:CDS
GATTTCCTCCCTCCTCCAAA+AGG 0.527021 4_2:+62451767 Msa0613630:CDS
TTGGAATCCCCTTCAAGACA+TGG 0.527970 4_2:-62453116 None:intergenic
AAGACGATGGCGAGAAGGTA+GGG 0.529617 4_2:-62447552 None:intergenic
CTGACTCTCCAGATCTCAAA+GGG 0.533076 4_2:+62451397 Msa0613630:CDS
AAAGGTTGGATCTGAAGAGA+TGG 0.533214 4_2:+62447821 Msa0613630:intron
CAGTCAGTCTCTTAAAGACC+AGG 0.538247 4_2:+62451455 Msa0613630:CDS
AATATCTGTTCTAAAGAAAG+TGG 0.538396 4_2:-62451426 None:intergenic
GATTGCAGCCATGTCTTGAA+GGG 0.543595 4_2:+62453108 Msa0613630:intron
TAAATGATGTCATGTTAGAA+CGG 0.544042 4_2:+62449652 Msa0613630:CDS
TCTGAACGGTCTCGTAGTAA+AGG 0.547365 4_2:-62450383 None:intergenic
GAAGACGATGGCGAGAAGGT+AGG 0.547511 4_2:-62447553 None:intergenic
AGGCCTACCCATCATTGTAT+GGG 0.548855 4_2:-62451376 None:intergenic
GAGTGCCCTTGATGGCTACA+AGG 0.550430 4_2:+62450679 Msa0613630:CDS
TGGGATTGGTGGCTCGGTGA+AGG 0.550844 4_2:-62447483 None:intergenic
TCAGGAAGACGATGGCGAGA+AGG 0.551767 4_2:-62447557 None:intergenic
TAAACATTGAGTGGATGTCT+AGG 0.556673 4_2:-62453254 None:intergenic
AGCAAAAGTTACATGCTGAA+AGG 0.557415 4_2:+62449893 Msa0613630:CDS
TTTGTTCCAACTCAATGCCC+CGG 0.558295 4_2:-62450451 None:intergenic
CTGGTCTTTAAGAGACTGAC+TGG 0.561616 4_2:-62451454 None:intergenic
GGGCTGGAATTACAAAATGC+AGG 0.564720 4_2:+62451476 Msa0613630:CDS
AGGTGGAGTTAGAAGAGAAG+GGG 0.565354 4_2:-62447522 None:intergenic
CCAAGATTCTAAACATTGAG+TGG 0.566179 4_2:-62453263 None:intergenic
CAAGCATTTCTATTGACGTA+GGG 0.573774 4_2:-62450427 None:intergenic
AAGTAAAACAGAGGCACTTG+AGG 0.575761 4_2:+62449728 Msa0613630:CDS
ATAAATGACTTACATTGGAG+TGG 0.577293 4_2:-62447716 None:intergenic
ACAAGATTCGTACCAGTTGA+CGG 0.578548 4_2:-62447582 None:intergenic
TAGTTGAAGGAGAAAAGCTA+AGG 0.579762 4_2:+62450208 Msa0613630:CDS
GAGATCTGATTGAAGCTCCT+CGG 0.580804 4_2:-62449036 None:intergenic
GATGATCGTGATCGCCTACA+AGG 0.581309 4_2:+62449624 Msa0613630:CDS
GAGTCAATGCTGTGAAATTG+GGG 0.581648 4_2:+62453216 Msa0613630:CDS
CCTACGTCAATAGAAATGCT+TGG 0.587483 4_2:+62450428 Msa0613630:CDS
TCAATAGAAATGCTTGGCCG+GGG 0.588845 4_2:+62450434 Msa0613630:CDS
ATGTTTCTTGTAGAAATAGA+GGG 0.591156 4_2:+62453343 Msa0613630:three_prime_UTR
GGTGGAGTTAGAAGAGAAGG+GGG 0.592235 4_2:-62447521 None:intergenic
CCAAGCATTTCTATTGACGT+AGG 0.594729 4_2:-62450428 None:intergenic
TAGAGCGCCGTTAACTGCAA+TGG 0.596034 4_2:+62447875 Msa0613630:CDS
CCTGACTCTCCAGATCTCAA+AGG 0.596635 4_2:+62451396 Msa0613630:CDS
AATTACCTTGTAGCCATCAA+GGG 0.603883 4_2:-62450684 None:intergenic
AGTGAAAGACTTTCAAGGAG+TGG 0.608249 4_2:+62452331 Msa0613630:CDS
AACACTGAACAACAAGTACA+AGG 0.609494 4_2:+62452280 Msa0613630:CDS
TGCGCAAAGTAACGACAAAG+TGG 0.612147 4_2:-62452161 None:intergenic
TATTGTCAAATCGGTCAAGT+GGG 0.612810 4_2:+62451625 Msa0613630:CDS
TTATTGTCAAATCGGTCAAG+TGG 0.613155 4_2:+62451624 Msa0613630:CDS
AAACCCATACAATGATGGGT+AGG 0.615951 4_2:+62451373 Msa0613630:CDS
ATTGCAGCCATGTCTTGAAG+GGG 0.623975 4_2:+62453109 Msa0613630:intron
GGAACGTTTGAAGGAAACTC+AGG 0.625035 4_2:+62452363 Msa0613630:CDS
TTCCTTCAAACGTTCCCCAG+TGG 0.633447 4_2:-62452356 None:intergenic
CAACCGTCTTCGTTTCTGAA+CGG 0.634819 4_2:-62450397 None:intergenic
GAGGAGGGAGGAAATCTCAT+CGG 0.641873 4_2:-62451760 None:intergenic
TGAAAGACTTTCAAGGAGTG+GGG 0.656119 4_2:+62452333 Msa0613630:CDS
TAAATTGGCAAGTAAAACAG+AGG 0.665756 4_2:+62449719 Msa0613630:CDS
GGTGAAAACGTCATGCTGAG+AGG 0.665998 4_2:-62450636 None:intergenic
GGCACTACAAACATCGACAA+TGG 0.670045 4_2:-62451739 None:intergenic
AGATGGTGGATCTTATTAAG+CGG 0.670837 4_2:+62448447 Msa0613630:CDS
TACAAACATCGACAATGGTG+AGG 0.674542 4_2:-62451734 None:intergenic
AGATCTCAATTCAGCTAACG+AGG 0.675031 4_2:+62449052 Msa0613630:CDS
TTCAAGGAGTGGGGCCACTG+GGG 0.688770 4_2:+62452342 Msa0613630:CDS
CGAGAAGGTAGGGTTTGCGG+AGG 0.696225 4_2:-62447542 None:intergenic
AGACCGTTCAGAAACGAAGA+CGG 0.700730 4_2:+62450394 Msa0613630:CDS
AGTCAGTCTCTTAAAGACCA+GGG 0.703830 4_2:+62451456 Msa0613630:CDS
TGACGGAGTCAGGAAGACGA+TGG 0.711558 4_2:-62447565 None:intergenic
GCGCATATGTGGTATAAACG+AGG 0.734281 4_2:+62452179 Msa0613630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAAAAAAATCATAT+TGG - chr4_2:62449189-62449208 None:intergenic 10.0%
!!! TTATGAGAAATTTTTAATAA+TGG - chr4_2:62449974-62449993 None:intergenic 10.0%
!! TATTATCATTTAATTACTTT+AGG + chr4_2:62450895-62450914 Msa0613630:intron 10.0%
!!! GATTTTTATTTTACTTTTTT+TGG + chr4_2:62452823-62452842 Msa0613630:intron 10.0%
!!! AAGCTTAATTTTTTTATAGA+TGG + chr4_2:62447662-62447681 Msa0613630:intron 15.0%
!!! TCAAATATTTTATCTTTAAG+CGG + chr4_2:62448197-62448216 Msa0613630:intron 15.0%
!!! TCTTTTAATGTTATAAAAGT+AGG + chr4_2:62448351-62448370 Msa0613630:intron 15.0%
!! ATTATATTTATCACAAAAGA+CGG - chr4_2:62448575-62448594 None:intergenic 15.0%
!!! AAAAGCAAAATAAAGATTTT+TGG - chr4_2:62448904-62448923 None:intergenic 15.0%
!!! TAATTTTTTTTAGTTCTTCT+CGG - chr4_2:62449602-62449621 None:intergenic 15.0%
!!! GGGTTTTATTATATTTAATA+TGG + chr4_2:62449939-62449958 Msa0613630:intron 15.0%
!! AAATGATAAAATGTTTATGA+TGG + chr4_2:62449996-62450015 Msa0613630:intron 15.0%
!!! GCTAAATTATTTTTATTTCT+AGG + chr4_2:62450322-62450341 Msa0613630:intron 15.0%
!!! ATTTTCATATTCATATTACT+AGG + chr4_2:62451560-62451579 Msa0613630:intron 15.0%
!! GCATTATGAAATAAATAATA+AGG - chr4_2:62452241-62452260 None:intergenic 15.0%
!! TCAATAATGCAAAATTATAT+GGG - chr4_2:62452605-62452624 None:intergenic 15.0%
!! ATCAATAATGCAAAATTATA+TGG - chr4_2:62452606-62452625 None:intergenic 15.0%
!! TTGACTACATGATAAAATTA+GGG - chr4_2:62447627-62447646 None:intergenic 20.0%
!! ATTTGATAAATGACTTACAT+TGG - chr4_2:62447724-62447743 None:intergenic 20.0%
!!! TTCTTATGATTTCTGAAAAA+AGG + chr4_2:62447803-62447822 Msa0613630:intron 20.0%
!!! TTATCTTACTCAATTTTTCA+AGG + chr4_2:62448027-62448046 Msa0613630:intron 20.0%
!!! TATCTTACTCAATTTTTCAA+GGG + chr4_2:62448028-62448047 Msa0613630:intron 20.0%
!! TGTGATAAATATAATTGTGT+TGG + chr4_2:62448580-62448599 Msa0613630:intron 20.0%
!! GTGATAAATATAATTGTGTT+GGG + chr4_2:62448581-62448600 Msa0613630:intron 20.0%
!!! AAGTAGTTTGCTTATATAAT+AGG + chr4_2:62448777-62448796 Msa0613630:intron 20.0%
!! ACTCAAAATAAATACTTTCA+GGG - chr4_2:62448941-62448960 None:intergenic 20.0%
!! TACTCAAAATAAATACTTTC+AGG - chr4_2:62448942-62448961 None:intergenic 20.0%
!!! TGAAAGTATTTATTTTGAGT+AGG + chr4_2:62448941-62448960 Msa0613630:intron 20.0%
!! ATATGAAACATACTCAAAAT+TGG + chr4_2:62449695-62449714 Msa0613630:CDS 20.0%
!! ATACTCAAAATTGGATAAAT+TGG + chr4_2:62449704-62449723 Msa0613630:CDS 20.0%
!! TAAATAAACGATCTTAACAT+AGG - chr4_2:62449777-62449796 None:intergenic 20.0%
!! AAAGGAGAAAATAAATATAC+TGG + chr4_2:62449870-62449889 Msa0613630:CDS 20.0%
!!! ACTAACTTATATTTTCTTTC+TGG + chr4_2:62450072-62450091 Msa0613630:intron 20.0%
!!! CTAACTTATATTTTCTTTCT+GGG + chr4_2:62450073-62450092 Msa0613630:intron 20.0%
!!! TAACTTATATTTTCTTTCTG+GGG + chr4_2:62450074-62450093 Msa0613630:intron 20.0%
!!! TTGATTTGTTGTTTTGTTTT+GGG + chr4_2:62451273-62451292 Msa0613630:intron 20.0%
!! GTAATATGAATATGAAAATC+AGG - chr4_2:62451559-62451578 None:intergenic 20.0%
!!! AAGATTTGTTATTGTCAAAT+CGG + chr4_2:62451616-62451635 Msa0613630:CDS 20.0%
!! CATATAAAGAAAACATTTAC+AGG - chr4_2:62451835-62451854 None:intergenic 20.0%
!!! CTGTAAATGTTTTCTTTATA+TGG + chr4_2:62451833-62451852 Msa0613630:intron 20.0%
!!! TGGAAATAGTATTTTCAATA+CGG - chr4_2:62451912-62451931 None:intergenic 20.0%
!! ATTGGATTCTAATATACTTA+TGG + chr4_2:62452749-62452768 Msa0613630:intron 20.0%
!! TTGGATTCTAATATACTTAT+GGG + chr4_2:62452750-62452769 Msa0613630:intron 20.0%
!!! ACAATTAAAAGCATCAATTA+AGG + chr4_2:62452792-62452811 Msa0613630:intron 20.0%
!! CGACAATATAAATATGTTAT+GGG - chr4_2:62453088-62453107 None:intergenic 20.0%
!! CCATAACATATTTATATTGT+CGG + chr4_2:62453086-62453105 Msa0613630:intron 20.0%
! GTTGACTACATGATAAAATT+AGG - chr4_2:62447628-62447647 None:intergenic 25.0%
!!! TTTTTTTATAGATGGCTTCT+CGG + chr4_2:62447670-62447689 Msa0613630:intron 25.0%
!! TATGATTTCTGAAAAAAGGT+TGG + chr4_2:62447807-62447826 Msa0613630:intron 25.0%
! CTTAATGAGAAGATGAAAAA+GGG + chr4_2:62447978-62447997 Msa0613630:intron 25.0%
! AGACAAACCTTATTATCAAA+AGG - chr4_2:62448008-62448027 None:intergenic 25.0%
!!! TTTTGGAGAACTTTTGAAAA+CGG + chr4_2:62448101-62448120 Msa0613630:intron 25.0%
!! AATTAGGTTGTTTATCCAAT+CGG + chr4_2:62448316-62448335 Msa0613630:intron 25.0%
!!! ATAAAAGTAGGTGTTGTTTA+TGG + chr4_2:62448363-62448382 Msa0613630:intron 25.0%
!! TGTTGTTTATGGAACTTATT+TGG + chr4_2:62448374-62448393 Msa0613630:intron 25.0%
! GTTGTTTATGGAACTTATTT+GGG + chr4_2:62448375-62448394 Msa0613630:intron 25.0%
!! TTTTGATACGCAGAAAAAAA+TGG + chr4_2:62448421-62448440 Msa0613630:intron 25.0%
! CTAATCAGTCACAATATTTA+GGG - chr4_2:62448662-62448681 None:intergenic 25.0%
! TTACTAGCAATTGTGAATTT+AGG + chr4_2:62448752-62448771 Msa0613630:intron 25.0%
! TAAGATCTCTTGTATCATTA+AGG - chr4_2:62449121-62449140 None:intergenic 25.0%
! TGATACAAGAGATCTTAATA+AGG + chr4_2:62449124-62449143 Msa0613630:CDS 25.0%
!! TCACAAACATTTTCATGATT+TGG - chr4_2:62449251-62449270 None:intergenic 25.0%
! TTCGTTAAAGAATGAATTGA+AGG + chr4_2:62449294-62449313 Msa0613630:intron 25.0%
! TAAATGATGTCATGTTAGAA+CGG + chr4_2:62449652-62449671 Msa0613630:CDS 25.0%
!!! ATTTATTTTCTCCTTTTGAG+AGG - chr4_2:62449866-62449885 None:intergenic 25.0%
!! ATATAAGTTAGTGTCAGTTT+TGG - chr4_2:62450064-62450083 None:intergenic 25.0%
!! AAAGAATTTCAAGTAGTTGA+AGG + chr4_2:62450195-62450214 Msa0613630:CDS 25.0%
! TTGATAAATTATGATGCGAA+AGG - chr4_2:62450721-62450740 None:intergenic 25.0%
! ACACTCAAAAAAAATTCTGT+AGG - chr4_2:62450765-62450784 None:intergenic 25.0%
! ATTGATTGAATGTTTAACGT+TGG + chr4_2:62450842-62450861 Msa0613630:intron 25.0%
!!! TTGTGTACTTAAAGTATTGA+TGG - chr4_2:62450991-62451010 None:intergenic 25.0%
! TTTATATTTCCTATGAACCT+TGG + chr4_2:62451023-62451042 Msa0613630:intron 25.0%
!! GCATGATATTTTGTTCAAAT+AGG + chr4_2:62451045-62451064 Msa0613630:intron 25.0%
!! TGATATTTTGTTCAAATAGG+AGG + chr4_2:62451048-62451067 Msa0613630:intron 25.0%
!!! GTTGATTTGTTGTTTTGTTT+TGG + chr4_2:62451272-62451291 Msa0613630:intron 25.0%
! TTGGGTATAAATTAATGATC+TGG + chr4_2:62451291-62451310 Msa0613630:intron 25.0%
! ATAAATTAATGATCTGGACA+TGG + chr4_2:62451297-62451316 Msa0613630:intron 25.0%
!!! AATATCTGTTCTAAAGAAAG+TGG - chr4_2:62451429-62451448 None:intergenic 25.0%
! TGACAATAACAAATCTTTGA+TGG - chr4_2:62451613-62451632 None:intergenic 25.0%
! ACTATTAGACATGACAAAAA+TGG + chr4_2:62451693-62451712 Msa0613630:CDS 25.0%
! AACACAATAATACCTGATTT+GGG - chr4_2:62451796-62451815 None:intergenic 25.0%
! AAACACAATAATACCTGATT+TGG - chr4_2:62451797-62451816 None:intergenic 25.0%
!! TCAAAAAGTGATAAGTTGAA+TGG - chr4_2:62451932-62451951 None:intergenic 25.0%
! TGGTTTCATTTATGAAACAT+AGG + chr4_2:62452063-62452082 Msa0613630:intron 25.0%
!! TTTTCATTGTTGTCATATTC+AGG + chr4_2:62452464-62452483 Msa0613630:intron 25.0%
! ATTGTAGATTGTGTTATGAT+TGG - chr4_2:62452986-62453005 None:intergenic 25.0%
! CCGACAATATAAATATGTTA+TGG - chr4_2:62453089-62453108 None:intergenic 25.0%
! ATGTTTCTTGTAGAAATAGA+GGG + chr4_2:62453343-62453362 Msa0613630:three_prime_UTR 25.0%
ACTACATGATAAAATTAGGG+AGG - chr4_2:62447624-62447643 None:intergenic 30.0%
ATAAATGACTTACATTGGAG+TGG - chr4_2:62447719-62447738 None:intergenic 30.0%
! ATCTTTTGTGAACTCAATTG+CGG - chr4_2:62447943-62447962 None:intergenic 30.0%
GTTCACAAAAGATGATATAG+AGG + chr4_2:62447950-62447969 Msa0613630:intron 30.0%
GCTTAATGAGAAGATGAAAA+AGG + chr4_2:62447977-62447996 Msa0613630:intron 30.0%
!! ATTTCTAGCAAAAAGCTATG+CGG - chr4_2:62448175-62448194 None:intergenic 30.0%
AGCTGCAAATTAAGCTAATT+AGG + chr4_2:62448300-62448319 Msa0613630:intron 30.0%
! ATTAGGTTGTTTATCCAATC+GGG + chr4_2:62448317-62448336 Msa0613630:intron 30.0%
CCTAATCAGTCACAATATTT+AGG - chr4_2:62448663-62448682 None:intergenic 30.0%
CCTAAATATTGTGACTGATT+AGG + chr4_2:62448660-62448679 Msa0613630:intron 30.0%
AGATCTTAATAAGGAATTGC+AGG + chr4_2:62449133-62449152 Msa0613630:CDS 30.0%
GAAAATGTTTGTGAACCTAT+TGG + chr4_2:62449257-62449276 Msa0613630:intron 30.0%
AGCAGCAAAAAATTTCCAAT+AGG - chr4_2:62449275-62449294 None:intergenic 30.0%
CAAAATTCAAGTGCTTGAAA+AGG - chr4_2:62449395-62449414 None:intergenic 30.0%
TTGCGAAGAGGAAATAATTA+AGG + chr4_2:62449435-62449454 Msa0613630:intron 30.0%
CTTGCAACAAAAATATGGAA+AGG - chr4_2:62449496-62449515 None:intergenic 30.0%
AATCCTGAGATAAGAAGAAA+GGG - chr4_2:62449545-62449564 None:intergenic 30.0%
!!! CATCATTTAGTTTTCCTTGT+AGG - chr4_2:62449641-62449660 None:intergenic 30.0%
AAATGATGTCATGTTAGAAC+GGG + chr4_2:62449653-62449672 Msa0613630:CDS 30.0%
TAAATTGGCAAGTAAAACAG+AGG + chr4_2:62449719-62449738 Msa0613630:CDS 30.0%
AAGTTAGAGGTAATGCAATT+GGG + chr4_2:62449919-62449938 Msa0613630:intron 30.0%
TCGTAAACTACAAGATCAAT+TGG + chr4_2:62450167-62450186 Msa0613630:CDS 30.0%
!!! TTTTATTTCTAGGAGCTGAA+AGG + chr4_2:62450332-62450351 Msa0613630:intron 30.0%
TGAAACTCGTAAGAAACAAT+AGG - chr4_2:62450513-62450532 None:intergenic 30.0%
TTTGTCCTGTAAAAATTAGC+AGG + chr4_2:62450569-62450588 Msa0613630:intron 30.0%
! ACAGCTTTTTACATTTGACA+AGG + chr4_2:62450598-62450617 Msa0613630:CDS 30.0%
ATAAATTATGATGCGAAAGG+AGG - chr4_2:62450718-62450737 None:intergenic 30.0%
! AAAACGTAGGAGGTTTTTAA+AGG - chr4_2:62450956-62450975 None:intergenic 30.0%
!! TGTACTTAAAGTATTGATGG+TGG - chr4_2:62450988-62451007 None:intergenic 30.0%
TTGAACAAAATATCATGCCA+AGG - chr4_2:62451043-62451062 None:intergenic 30.0%
ATTGTACCCTTATATTGACA+TGG + chr4_2:62451201-62451220 Msa0613630:intron 30.0%
AGTAAGCCATGTCAATATAA+GGG - chr4_2:62451210-62451229 None:intergenic 30.0%
TAGTAAGCCATGTCAATATA+AGG - chr4_2:62451211-62451230 None:intergenic 30.0%
! TAGGTATGCATTTTTGCTTA+TGG + chr4_2:62451333-62451352 Msa0613630:intron 30.0%
! ATTTTTGCTTATGGACAAAC+AGG + chr4_2:62451342-62451361 Msa0613630:CDS 30.0%
ATATTACTAGGCATCAGTAT+TGG + chr4_2:62451572-62451591 Msa0613630:intron 30.0%
! AAATGGAAACACACATGTTT+TGG + chr4_2:62451710-62451729 Msa0613630:CDS 30.0%
TATTGTGTTTGCTCCATATT+AGG + chr4_2:62451807-62451826 Msa0613630:intron 30.0%
ACATTTACAGGATCCTAATA+TGG - chr4_2:62451823-62451842 None:intergenic 30.0%
TGGTGTAAGAATAAACATTG+TGG + chr4_2:62451853-62451872 Msa0613630:intron 30.0%
GGTGTAAGAATAAACATTGT+GGG + chr4_2:62451854-62451873 Msa0613630:intron 30.0%
TGTAACAAAACTTATCGTGA+AGG - chr4_2:62452211-62452230 None:intergenic 30.0%
TGTCTTAAACCTGATTGATT+TGG + chr4_2:62452303-62452322 Msa0613630:CDS 30.0%
AAATATGACATTGCTCAAAC+AGG - chr4_2:62452508-62452527 None:intergenic 30.0%
! GGTTTTTATATACCTGAAGT+AGG - chr4_2:62452584-62452603 None:intergenic 30.0%
GCAGTATCATTTCTTAAGAT+TGG + chr4_2:62452731-62452750 Msa0613630:intron 30.0%
ATCATCTCATGTTAGAACTT+AGG + chr4_2:62452953-62452972 Msa0613630:intron 30.0%
! GTTGACAAACATCAAAGTTT+TGG - chr4_2:62453138-62453157 None:intergenic 30.0%
CATGTTTCTTGTAGAAATAG+AGG + chr4_2:62453342-62453361 Msa0613630:three_prime_UTR 30.0%
ATTTGTGAAATTGGGATTGG+TGG - chr4_2:62447497-62447516 None:intergenic 35.0%
! GTGATTTGTGAAATTGGGAT+TGG - chr4_2:62447500-62447519 None:intergenic 35.0%
AGGGAGGAATGAAATTGAAA+TGG - chr4_2:62447608-62447627 None:intergenic 35.0%
TTGTTCACCATTGCAGTTAA+CGG - chr4_2:62447885-62447904 None:intergenic 35.0%
!! GGGAACTCCTTTTGATAATA+AGG + chr4_2:62447998-62448017 Msa0613630:intron 35.0%
CTCGAATAAGTCAATCCAAA+CGG - chr4_2:62448055-62448074 None:intergenic 35.0%
!! GAACTTTTGAAAACGGCTTA+TGG + chr4_2:62448108-62448127 Msa0613630:intron 35.0%
! TTTCTAGCAAAAAGCTATGC+GGG - chr4_2:62448174-62448193 None:intergenic 35.0%
! TTAGGTTGTTTATCCAATCG+GGG + chr4_2:62448318-62448337 Msa0613630:intron 35.0%
ATGGAACTTATTTGGGTGTT+TGG + chr4_2:62448382-62448401 Msa0613630:intron 35.0%
TTCTGCGTATCAAAAACATG+AGG - chr4_2:62448416-62448435 None:intergenic 35.0%
!! AGATGGTGGATCTTATTAAG+CGG + chr4_2:62448447-62448466 Msa0613630:CDS 35.0%
! ATGAAGCGTTTCAATCTTGT+TGG - chr4_2:62448498-62448517 None:intergenic 35.0%
!! GTTAAGAAGTGTTCTGATAC+TGG + chr4_2:62448536-62448555 Msa0613630:CDS 35.0%
CCAAAAGACCAAAACTAATG+CGG + chr4_2:62448614-62448633 Msa0613630:intron 35.0%
CTAGTGACTGTGCAATAATT+TGG + chr4_2:62448820-62448839 Msa0613630:intron 35.0%
TGAGATGAAAAATAAGACCG+AGG + chr4_2:62449019-62449038 Msa0613630:CDS 35.0%
AATTCAAGTGCTTGAAAAGG+AGG - chr4_2:62449392-62449411 None:intergenic 35.0%
TAAGTAACATTGTTGCGAAG+AGG + chr4_2:62449423-62449442 Msa0613630:intron 35.0%
AGAGGCTTGCAACAAAAATA+TGG - chr4_2:62449501-62449520 None:intergenic 35.0%
AACGCAACACAAAAAATGAG+AGG - chr4_2:62449519-62449538 None:intergenic 35.0%
GAATCCTGAGATAAGAAGAA+AGG - chr4_2:62449546-62449565 None:intergenic 35.0%
CAATAGTGTGTTTCCTTTAC+AGG + chr4_2:62449831-62449850 Msa0613630:intron 35.0%
AGCAAAAGTTACATGCTGAA+AGG + chr4_2:62449893-62449912 Msa0613630:CDS 35.0%
GCAAAAGTTACATGCTGAAA+GGG + chr4_2:62449894-62449913 Msa0613630:CDS 35.0%
GAAGTTAGAGGTAATGCAAT+TGG + chr4_2:62449918-62449937 Msa0613630:intron 35.0%
TAGTTGAAGGAGAAAAGCTA+AGG + chr4_2:62450208-62450227 Msa0613630:CDS 35.0%
!! AACACTGTCTTGGTAATGTT+TGG + chr4_2:62450243-62450262 Msa0613630:intron 35.0%
CAAGCATTTCTATTGACGTA+GGG - chr4_2:62450430-62450449 None:intergenic 35.0%
! TCTGTCCTGCTAATTTTTAC+AGG - chr4_2:62450577-62450596 None:intergenic 35.0%
TTTCACCGAAATATCACAAC+TGG + chr4_2:62450652-62450671 Msa0613630:CDS 35.0%
AATTACCTTGTAGCCATCAA+GGG - chr4_2:62450687-62450706 None:intergenic 35.0%
!!! GAGCTTTTTTAAAACGTAGG+AGG - chr4_2:62450966-62450985 None:intergenic 35.0%
!!! GTGGAGCTTTTTTAAAACGT+AGG - chr4_2:62450969-62450988 None:intergenic 35.0%
AATATCATGCCAAGGTTCAT+AGG - chr4_2:62451035-62451054 None:intergenic 35.0%
TAATACCTCCAACTTTCTTG+TGG + chr4_2:62451082-62451101 Msa0613630:intron 35.0%
GATATCAACCACAAGAAAGT+TGG - chr4_2:62451093-62451112 None:intergenic 35.0%
! CTTTCTTGTGGTTGATATCT+TGG + chr4_2:62451094-62451113 Msa0613630:intron 35.0%
CAAAGAATACGTGAAGGAAA+AGG - chr4_2:62451242-62451261 None:intergenic 35.0%
! CTTTTCCTTCACGTATTCTT+TGG + chr4_2:62451240-62451259 Msa0613630:intron 35.0%
ACATGGCTGTTTATTATGCT+AGG + chr4_2:62451314-62451333 Msa0613630:intron 35.0%
AGGAAAAACCCATACAATGA+TGG + chr4_2:62451368-62451387 Msa0613630:CDS 35.0%
GGAAAAACCCATACAATGAT+GGG + chr4_2:62451369-62451388 Msa0613630:CDS 35.0%
TGGAATTACAAAATGCAGGT+TGG + chr4_2:62451480-62451499 Msa0613630:intron 35.0%
GTTGACATGTGTCACATAAA+TGG + chr4_2:62451525-62451544 Msa0613630:intron 35.0%
TTATTGTCAAATCGGTCAAG+TGG + chr4_2:62451624-62451643 Msa0613630:CDS 35.0%
TATTGTCAAATCGGTCAAGT+GGG + chr4_2:62451625-62451644 Msa0613630:CDS 35.0%
! CAATATGCTCTTGTTGTACT+TGG + chr4_2:62452012-62452031 Msa0613630:intron 35.0%
ACTAGAGTCTACATATAGCT+TGG + chr4_2:62452040-62452059 Msa0613630:intron 35.0%
AACACTGAACAACAAGTACA+AGG + chr4_2:62452280-62452299 Msa0613630:CDS 35.0%
!! TTAAACCTGATTGATTTGGC+TGG + chr4_2:62452307-62452326 Msa0613630:CDS 35.0%
TATTTATGATCTTGAGCTCC+TGG + chr4_2:62452409-62452428 Msa0613630:intron 35.0%
AGAAAGTTGAATCATTCACC+AGG - chr4_2:62452430-62452449 None:intergenic 35.0%
GAGCAATGTCATATTTGCTT+TGG + chr4_2:62452512-62452531 Msa0613630:CDS 35.0%
!!! GTAAGTTTTGAATCCCTGAA+AGG - chr4_2:62452558-62452577 None:intergenic 35.0%
AAAACTTACACACCTACTTC+AGG + chr4_2:62452569-62452588 Msa0613630:CDS 35.0%
!! CTTGTTTCAACGGATTAAAG+CGG - chr4_2:62452899-62452918 None:intergenic 35.0%
! GAGTGACTTTCTTGTTTCAA+CGG - chr4_2:62452909-62452928 None:intergenic 35.0%
TCAAGTCCATATTCTCTGAA+GGG - chr4_2:62452931-62452950 None:intergenic 35.0%
ATCAAGTCCATATTCTCTGA+AGG - chr4_2:62452932-62452951 None:intergenic 35.0%
! TAAATATGTTATGGGAGCAC+TGG - chr4_2:62453080-62453099 None:intergenic 35.0%
TCGTCAATTGAAGATTGATC+AGG - chr4_2:62453167-62453186 None:intergenic 35.0%
TAGAGTCAATGCTGTGAAAT+TGG + chr4_2:62453214-62453233 Msa0613630:CDS 35.0%
AGAGTCAATGCTGTGAAATT+GGG + chr4_2:62453215-62453234 Msa0613630:CDS 35.0%
TAAACATTGAGTGGATGTCT+AGG - chr4_2:62453257-62453276 None:intergenic 35.0%
CCAAGATTCTAAACATTGAG+TGG - chr4_2:62453266-62453285 None:intergenic 35.0%
! CCACTCAATGTTTAGAATCT+TGG + chr4_2:62453263-62453282 Msa0613630:exon 35.0%
! GGGGTGTGATTTGTGAAATT+GGG - chr4_2:62447505-62447524 None:intergenic 40.0%
ACAAGATTCGTACCAGTTGA+CGG - chr4_2:62447585-62447604 None:intergenic 40.0%
!! CTTACATTGGAGTGGTTTTG+AGG - chr4_2:62447711-62447730 None:intergenic 40.0%
AAAGGTTGGATCTGAAGAGA+TGG + chr4_2:62447821-62447840 Msa0613630:intron 40.0%
GCTACTGCAAGTAATGTAGA+GGG + chr4_2:62447906-62447925 Msa0613630:intron 40.0%
!!! CAATTTTTCAAGGGTCCGTT+TGG + chr4_2:62448037-62448056 Msa0613630:intron 40.0%
! AAGCACTTGTGAGACTGTTT+TGG + chr4_2:62448084-62448103 Msa0613630:intron 40.0%
AGATAGATTAAAGCCCCGAT+TGG - chr4_2:62448334-62448353 None:intergenic 40.0%
GCAGAAAAAAATGGAGCAGA+TGG + chr4_2:62448430-62448449 Msa0613630:intron 40.0%
GAAAAAAATGGAGCAGATGG+TGG + chr4_2:62448433-62448452 Msa0613630:intron 40.0%
! GGCTTAAGCTTTGTGTTCAA+TGG + chr4_2:62448468-62448487 Msa0613630:CDS 40.0%
!!! CCGCATTAGTTTTGGTCTTT+TGG - chr4_2:62448617-62448636 None:intergenic 40.0%
!! AAGTCTCTCCGCATTAGTTT+TGG - chr4_2:62448625-62448644 None:intergenic 40.0%
AGATCTCAATTCAGCTAACG+AGG + chr4_2:62449052-62449071 Msa0613630:CDS 40.0%
ATGAATTGAAGGAGAGTAGC+TGG + chr4_2:62449305-62449324 Msa0613630:intron 40.0%
TGAATTGAAGGAGAGTAGCT+GGG + chr4_2:62449306-62449325 Msa0613630:intron 40.0%
! AAAGGAGGAGGCTAATGTTT+TGG - chr4_2:62449377-62449396 None:intergenic 40.0%
GATCCCTTTCTTCTTATCTC+AGG + chr4_2:62449539-62449558 Msa0613630:intron 40.0%
!! AAGTAAAACAGAGGCACTTG+AGG + chr4_2:62449728-62449747 Msa0613630:CDS 40.0%
!!! TATTTTCTTTCTGGGGCTTC+TGG + chr4_2:62450081-62450100 Msa0613630:intron 40.0%
! GATGGCTGATTTATCTGCTA+TGG + chr4_2:62450107-62450126 Msa0613630:intron 40.0%
AAAACTGCACAACACTGTCT+TGG + chr4_2:62450233-62450252 Msa0613630:CDS 40.0%
CCAAGCATTTCTATTGACGT+AGG - chr4_2:62450431-62450450 None:intergenic 40.0%
CCTACGTCAATAGAAATGCT+TGG + chr4_2:62450428-62450447 Msa0613630:CDS 40.0%
!! GGCATTGAGTTGGAACAAAA+TGG + chr4_2:62450455-62450474 Msa0613630:CDS 40.0%
AAACAATAGGAGTGGAGTAG+CGG - chr4_2:62450500-62450519 None:intergenic 40.0%
CTCGTAAGAAACAATAGGAG+TGG - chr4_2:62450508-62450527 None:intergenic 40.0%
CTGCACCAGTTGTGATATTT+CGG - chr4_2:62450660-62450679 None:intergenic 40.0%
GAATTACCTTGTAGCCATCA+AGG - chr4_2:62450688-62450707 None:intergenic 40.0%
ATCAACCACAAGAAAGTTGG+AGG - chr4_2:62451090-62451109 None:intergenic 40.0%
TGATATCTTGGATGTGTCTG+TGG + chr4_2:62451106-62451125 Msa0613630:intron 40.0%
AGAAGCCAAAGAATACGTGA+AGG - chr4_2:62451248-62451267 None:intergenic 40.0%
!! AAACCCATACAATGATGGGT+AGG + chr4_2:62451373-62451392 Msa0613630:CDS 40.0%
AGTCAGTCTCTTAAAGACCA+GGG + chr4_2:62451456-62451475 Msa0613630:CDS 40.0%
! CACTATTTTCTGCTCGTGTT+TGG - chr4_2:62451656-62451675 None:intergenic 40.0%
CGAGCAGAAAATAGTGTTCA+TGG + chr4_2:62451660-62451679 Msa0613630:CDS 40.0%
TACAAACATCGACAATGGTG+AGG - chr4_2:62451737-62451756 None:intergenic 40.0%
AGAGTCTACATATAGCTTGG+TGG + chr4_2:62452043-62452062 Msa0613630:intron 40.0%
ATTGACCTGAAGACACAAGA+GGG - chr4_2:62452105-62452124 None:intergenic 40.0%
TCTTGTGTCTTCAGGTCAAT+GGG + chr4_2:62452105-62452124 Msa0613630:intron 40.0%
CTGGAAGTGAAAGACTTTCA+AGG + chr4_2:62452326-62452345 Msa0613630:CDS 40.0%
AGTGAAAGACTTTCAAGGAG+TGG + chr4_2:62452331-62452350 Msa0613630:CDS 40.0%
GTGAAAGACTTTCAAGGAGT+GGG + chr4_2:62452332-62452351 Msa0613630:CDS 40.0%
TGAAAGACTTTCAAGGAGTG+GGG + chr4_2:62452333-62452352 Msa0613630:CDS 40.0%
! AAGAAGAGCATGTTCCTTTC+AGG + chr4_2:62452541-62452560 Msa0613630:CDS 40.0%
! AGAAGAGCATGTTCCTTTCA+GGG + chr4_2:62452542-62452561 Msa0613630:CDS 40.0%
GAGTCAATGCTGTGAAATTG+GGG + chr4_2:62453216-62453235 Msa0613630:CDS 40.0%
! TGAAATTGGGATTGGTGGCT+CGG - chr4_2:62447492-62447511 None:intergenic 45.0%
! GGGGGTGTGATTTGTGAAAT+TGG - chr4_2:62447506-62447525 None:intergenic 45.0%
AGGTGGAGTTAGAAGAGAAG+GGG - chr4_2:62447525-62447544 None:intergenic 45.0%
GAGGTGGAGTTAGAAGAGAA+GGG - chr4_2:62447526-62447545 None:intergenic 45.0%
!!! ACATTGGAGTGGTTTTGAGG+AGG - chr4_2:62447708-62447727 None:intergenic 45.0%
!! ATGGAGAGACAAAGAGTGTC+TGG + chr4_2:62447840-62447859 Msa0613630:CDS 45.0%
CGCTACTGCAAGTAATGTAG+AGG + chr4_2:62447905-62447924 Msa0613630:intron 45.0%
! CTAATGCGGAGAGACTTGTT+TGG + chr4_2:62448628-62448647 Msa0613630:intron 45.0%
! TTTGTGTGCGCTTTTCTGTG+TGG + chr4_2:62448692-62448711 Msa0613630:intron 45.0%
GAGATCTGATTGAAGCTCCT+CGG - chr4_2:62449039-62449058 None:intergenic 45.0%
GTTGCTAGGCAAGATAGCAA+TGG - chr4_2:62449341-62449360 None:intergenic 45.0%
TCAAGTGCTTGAAAAGGAGG+AGG - chr4_2:62449389-62449408 None:intergenic 45.0%
GAGGAACAAGTCTCCTGTAA+AGG - chr4_2:62449847-62449866 None:intergenic 45.0%
! GGAGACTTGTTCCTCTCAAA+AGG + chr4_2:62449852-62449871 Msa0613630:intron 45.0%
TGCTGAAAGGGAGAAGTTAG+AGG + chr4_2:62449906-62449925 Msa0613630:CDS 45.0%
TCTGAACGGTCTCGTAGTAA+AGG - chr4_2:62450386-62450405 None:intergenic 45.0%
AGACCGTTCAGAAACGAAGA+CGG + chr4_2:62450394-62450413 Msa0613630:CDS 45.0%
CAACCGTCTTCGTTTCTGAA+CGG - chr4_2:62450400-62450419 None:intergenic 45.0%
CGTCAATAGAAATGCTTGGC+CGG + chr4_2:62450432-62450451 Msa0613630:CDS 45.0%
GTCAATAGAAATGCTTGGCC+GGG + chr4_2:62450433-62450452 Msa0613630:CDS 45.0%
TCAATAGAAATGCTTGGCCG+GGG + chr4_2:62450434-62450453 Msa0613630:CDS 45.0%
TTTGTTCCAACTCAATGCCC+CGG - chr4_2:62450454-62450473 None:intergenic 45.0%
CAATCCACTTCACTTCCATG+TGG - chr4_2:62451185-62451204 None:intergenic 45.0%
GCTTATGGACAAACAGGTTC+AGG + chr4_2:62451348-62451367 Msa0613630:CDS 45.0%
AGGCCTACCCATCATTGTAT+GGG - chr4_2:62451379-62451398 None:intergenic 45.0%
CTGACTCTCCAGATCTCAAA+GGG + chr4_2:62451397-62451416 Msa0613630:CDS 45.0%
!! GGTATCATCCCTTTGAGATC+TGG - chr4_2:62451408-62451427 None:intergenic 45.0%
! CTTTAAGAGACTGACTGGTC+TGG - chr4_2:62451452-62451471 None:intergenic 45.0%
! CTGGTCTTTAAGAGACTGAC+TGG - chr4_2:62451457-62451476 None:intergenic 45.0%
CAGTCAGTCTCTTAAAGACC+AGG + chr4_2:62451455-62451474 Msa0613630:CDS 45.0%
! GCATTTTGTAATTCCAGCCC+TGG - chr4_2:62451476-62451495 None:intergenic 45.0%
GGGCTGGAATTACAAAATGC+AGG + chr4_2:62451476-62451495 Msa0613630:CDS 45.0%
GGCACTACAAACATCGACAA+TGG - chr4_2:62451742-62451761 None:intergenic 45.0%
CATTACCCTCTTGTGTCTTC+AGG + chr4_2:62452097-62452116 Msa0613630:intron 45.0%
CATTGACCTGAAGACACAAG+AGG - chr4_2:62452106-62452125 None:intergenic 45.0%
CTCTTGTGTCTTCAGGTCAA+TGG + chr4_2:62452104-62452123 Msa0613630:intron 45.0%
TGCGCAAAGTAACGACAAAG+TGG - chr4_2:62452164-62452183 None:intergenic 45.0%
! GTCGTTACTTTGCGCATATG+TGG + chr4_2:62452168-62452187 Msa0613630:CDS 45.0%
GCGCATATGTGGTATAAACG+AGG + chr4_2:62452179-62452198 Msa0613630:CDS 45.0%
CACTTCCAGCCAAATCAATC+AGG - chr4_2:62452315-62452334 None:intergenic 45.0%
GGAACGTTTGAAGGAAACTC+AGG + chr4_2:62452363-62452382 Msa0613630:CDS 45.0%
TGCTCAAACAGGAGAGACTT+TGG - chr4_2:62452497-62452516 None:intergenic 45.0%
GTCACTCCCTTCAGAGAATA+TGG + chr4_2:62452922-62452941 Msa0613630:intron 45.0%
GATTGCAGCCATGTCTTGAA+GGG + chr4_2:62453108-62453127 Msa0613630:intron 45.0%
ATTGCAGCCATGTCTTGAAG+GGG + chr4_2:62453109-62453128 Msa0613630:intron 45.0%
TTGGAATCCCCTTCAAGACA+TGG - chr4_2:62453119-62453138 None:intergenic 45.0%
GGTGGAGTTAGAAGAGAAGG+GGG - chr4_2:62447524-62447543 None:intergenic 50.0%
GGAGGTGGAGTTAGAAGAGA+AGG - chr4_2:62447527-62447546 None:intergenic 50.0%
AAGACGATGGCGAGAAGGTA+GGG - chr4_2:62447555-62447574 None:intergenic 50.0%
TGGCTTCTCGGAATCAGAAC+CGG + chr4_2:62447682-62447701 Msa0613630:CDS 50.0%
!! TAGAGCGCCGTTAACTGCAA+TGG + chr4_2:62447875-62447894 Msa0613630:CDS 50.0%
TGCCTAGCAACTCTCTTCAC+TGG + chr4_2:62449350-62449369 Msa0613630:intron 50.0%
GCCTAGCAACTCTCTTCACT+GGG + chr4_2:62449351-62449370 Msa0613630:intron 50.0%
GATGATCGTGATCGCCTACA+AGG + chr4_2:62449624-62449643 Msa0613630:CDS 50.0%
GGTGAAAACGTCATGCTGAG+AGG - chr4_2:62450639-62450658 None:intergenic 50.0%
!!! TTTTTTGTGTCTGCGCCCTG+TGG + chr4_2:62450918-62450937 Msa0613630:intron 50.0%
ATCTGTCATGAGACGCCACA+TGG + chr4_2:62451167-62451186 Msa0613630:intron 50.0%
CAGGCCTACCCATCATTGTA+TGG - chr4_2:62451380-62451399 None:intergenic 50.0%
!! CCTTTGAGATCTGGAGAGTC+AGG - chr4_2:62451399-62451418 None:intergenic 50.0%
CCTGACTCTCCAGATCTCAA+AGG + chr4_2:62451396-62451415 Msa0613630:CDS 50.0%
AGTCTCTTAAAGACCAGGGC+TGG + chr4_2:62451460-62451479 Msa0613630:CDS 50.0%
GAGGAGGGAGGAAATCTCAT+CGG - chr4_2:62451763-62451782 None:intergenic 50.0%
GATTTCCTCCCTCCTCCAAA+AGG + chr4_2:62451767-62451786 Msa0613630:CDS 50.0%
!! TGATTTGGGCAGCCTTTTGG+AGG - chr4_2:62451782-62451801 None:intergenic 50.0%
TCCAAAAGGCTGCCCAAATC+AGG + chr4_2:62451781-62451800 Msa0613630:CDS 50.0%
!!! ACCTGATTTGGGCAGCCTTT+TGG - chr4_2:62451785-62451804 None:intergenic 50.0%
TTCCTTCAAACGTTCCCCAG+TGG - chr4_2:62452359-62452378 None:intergenic 50.0%
GGATTGCAGCCATGTCTTGA+AGG + chr4_2:62453107-62453126 Msa0613630:intron 50.0%
TGGCGAGAAGGTAGGGTTTG+CGG - chr4_2:62447548-62447567 None:intergenic 55.0%
GAAGACGATGGCGAGAAGGT+AGG - chr4_2:62447556-62447575 None:intergenic 55.0%
TCAGGAAGACGATGGCGAGA+AGG - chr4_2:62447560-62447579 None:intergenic 55.0%
TGACGGAGTCAGGAAGACGA+TGG - chr4_2:62447568-62447587 None:intergenic 55.0%
GTCTTCCTGACTCCGTCAAC+TGG + chr4_2:62447570-62447589 Msa0613630:five_prime_UTR 55.0%
TCGTACCAGTTGACGGAGTC+AGG - chr4_2:62447578-62447597 None:intergenic 55.0%
!!! TGGAGTGGTTTTGAGGAGGC+CGG - chr4_2:62447704-62447723 None:intergenic 55.0%
GCCCAGTGAAGAGAGTTGCT+AGG - chr4_2:62449355-62449374 None:intergenic 55.0%
!! TTCTGGGGCTTCTGGCTAGA+TGG + chr4_2:62450089-62450108 Msa0613630:intron 55.0%
! GAGTGCCCTTGATGGCTACA+AGG + chr4_2:62450679-62450698 Msa0613630:CDS 55.0%
! AGGCAGAAGTGCAGACCACA+GGG - chr4_2:62450936-62450955 None:intergenic 55.0%
! AAGGCAGAAGTGCAGACCAC+AGG - chr4_2:62450937-62450956 None:intergenic 55.0%
GACGCCACATGGAAGTGAAG+TGG + chr4_2:62451178-62451197 Msa0613630:intron 55.0%
!! TTGGGCAGCCTTTTGGAGGA+GGG - chr4_2:62451778-62451797 None:intergenic 55.0%
!! TTTGGGCAGCCTTTTGGAGG+AGG - chr4_2:62451779-62451798 None:intergenic 55.0%
TTTCAAGGAGTGGGGCCACT+GGG + chr4_2:62452341-62452360 Msa0613630:CDS 55.0%
!! TGGGATTGGTGGCTCGGTGA+AGG - chr4_2:62447486-62447505 None:intergenic 60.0%
GAAGGTAGGGTTTGCGGAGG+TGG - chr4_2:62447542-62447561 None:intergenic 60.0%
CGAGAAGGTAGGGTTTGCGG+AGG - chr4_2:62447545-62447564 None:intergenic 60.0%
! CTGGTGCAGAGTGCCCTTGA+TGG + chr4_2:62450671-62450690 Msa0613630:CDS 60.0%
CTTTCAAGGAGTGGGGCCAC+TGG + chr4_2:62452340-62452359 Msa0613630:CDS 60.0%
TTCAAGGAGTGGGGCCACTG+GGG + chr4_2:62452342-62452361 Msa0613630:CDS 60.0%
GGCCACTGGGGAACGTTTGA+AGG + chr4_2:62452354-62452373 Msa0613630:CDS 60.0%
!! GCTTGGCCGGGGCATTGAGT+TGG + chr4_2:62450445-62450464 Msa0613630:CDS 65.0%
!! GGCAGCCTTTTGGAGGAGGG+AGG - chr4_2:62451775-62451794 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62447463 62453397 62447463 ID=Msa0613630;Name=Msa0613630
chr4_2 mRNA 62447463 62453397 62447463 ID=Msa0613630-mRNA-1;Parent=Msa0613630;Name=Msa0613630-mRNA-1;_AED=0.11;_eAED=0.11;_QI=129|0.86|0.87|1|0.86|0.87|16|120|638
chr4_2 exon 62447463 62447591 62447463 ID=Msa0613630-mRNA-1:exon:17183;Parent=Msa0613630-mRNA-1
chr4_2 exon 62447681 62447725 62447681 ID=Msa0613630-mRNA-1:exon:17184;Parent=Msa0613630-mRNA-1
chr4_2 exon 62447825 62447920 62447825 ID=Msa0613630-mRNA-1:exon:17185;Parent=Msa0613630-mRNA-1
chr4_2 exon 62448434 62448557 62448434 ID=Msa0613630-mRNA-1:exon:17186;Parent=Msa0613630-mRNA-1
chr4_2 exon 62449015 62449175 62449015 ID=Msa0613630-mRNA-1:exon:17187;Parent=Msa0613630-mRNA-1
chr4_2 exon 62449561 62449749 62449561 ID=Msa0613630-mRNA-1:exon:17188;Parent=Msa0613630-mRNA-1
chr4_2 exon 62449853 62449927 62449853 ID=Msa0613630-mRNA-1:exon:17189;Parent=Msa0613630-mRNA-1
chr4_2 exon 62450108 62450254 62450108 ID=Msa0613630-mRNA-1:exon:17190;Parent=Msa0613630-mRNA-1
chr4_2 exon 62450344 62450476 62450344 ID=Msa0613630-mRNA-1:exon:17191;Parent=Msa0613630-mRNA-1
chr4_2 exon 62450591 62450700 62450591 ID=Msa0613630-mRNA-1:exon:17192;Parent=Msa0613630-mRNA-1
chr4_2 exon 62451336 62451497 62451336 ID=Msa0613630-mRNA-1:exon:17193;Parent=Msa0613630-mRNA-1
chr4_2 exon 62451582 62451802 62451582 ID=Msa0613630-mRNA-1:exon:17194;Parent=Msa0613630-mRNA-1
chr4_2 exon 62452119 62452200 62452119 ID=Msa0613630-mRNA-1:exon:17195;Parent=Msa0613630-mRNA-1
chr4_2 exon 62452280 62452384 62452280 ID=Msa0613630-mRNA-1:exon:17196;Parent=Msa0613630-mRNA-1
chr4_2 exon 62452486 62452590 62452486 ID=Msa0613630-mRNA-1:exon:17197;Parent=Msa0613630-mRNA-1
chr4_2 exon 62453116 62453397 62453116 ID=Msa0613630-mRNA-1:exon:17198;Parent=Msa0613630-mRNA-1
chr4_2 five_prime_UTR 62447463 62447591 62447463 ID=Msa0613630-mRNA-1:five_prime_utr;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62447681 62447725 62447681 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62447825 62447920 62447825 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62448434 62448557 62448434 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62449015 62449175 62449015 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62449561 62449749 62449561 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62449853 62449927 62449853 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62450108 62450254 62450108 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62450344 62450476 62450344 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62450591 62450700 62450591 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62451336 62451497 62451336 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62451582 62451802 62451582 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62452119 62452200 62452119 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62452280 62452384 62452280 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62452486 62452590 62452486 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 CDS 62453116 62453277 62453116 ID=Msa0613630-mRNA-1:cds;Parent=Msa0613630-mRNA-1
chr4_2 three_prime_UTR 62453278 62453397 62453278 ID=Msa0613630-mRNA-1:three_prime_utr;Parent=Msa0613630-mRNA-1
Gene Sequence

>Msa0613630

ATGGCTTCTCGGAATCAGAACCGGCCTCCTCAAAACCACTCCAATGTTGGATCTGAAGAGATGGAGAGACAAAGAGTGTCTGGTAGAGCTAAAGCTAGAGCGCCGTTAACTGCAATGGTGAACAACGCTACTGCAAGTAATAAAAAAATGGAGCAGATGGTGGATCTTATTAAGCGGCTTAAGCTTTGTGTTCAATGGTGCGCCAACAAGATTGAAACGCTTCATTCTGAAGTTGAGTCTGCTGTTAAGAAGTGTTCTGATACTGAGATTGAGATGAAAAATAAGACCGAGGAGCTTCAATCAGATCTCAATTCAGCTAACGAGGCTTATAGAAGACTTGAAACAGAGAAATCAATCATTGCTGAGAGCCTTAATGATACAAGAGATCTTAATAAGGAATTGCAGGATCGATTGAAATCTCTTAAAGATTCACAGAGTGAAGCTATAAAGCATAAAGAAATGTTCCGAGAAGAACTAAAAAAAATTACAGATGATCGTGATCGCCTACAAGGAAAACTAAATGATGTCATGTTAGAACGGGAAAAATACATAAAATTTAAATATGAAACATACTCAAAATTGGATAAATTGGCAAGTAAAACAGAGGCACTTGAGGAGACTTGTTCCTCTCAAAAGGAGAAAATAAATATACTGGAGCAAAAGTTACATGCTGAAAGGGAGAAGTTAGAGATGGCTGATTTATCTGCTATGGAAACAAGAGCAACGTTTGAAGAGCAGAAAAGATTCATTCGTAAACTACAAGATCAATTGGCAGATAAAGAATTTCAAGTAGTTGAAGGAGAAAAGCTAAGGAAAAAACTGCACAACACTGTCTTGGAGCTGAAAGGAAATATTCGTGTGTTTTGTCGTGTACGACCTTTACTACGAGACCGTTCAGAAACGAAGACGGTTGTTTATTACCCTACGTCAATAGAAATGCTTGGCCGGGGCATTGAGTTGGAACAAAATGGACAGAAACAGCTTTTTACATTTGACAAGGTGTTTAATCATGACGCCTCTCAGCATGACGTTTTCACCGAAATATCACAACTGGTGCAGAGTGCCCTTGATGGCTACAAGGTATGCATTTTTGCTTATGGACAAACAGGTTCAGGAAAAACCCATACAATGATGGGTAGGCCTGACTCTCCAGATCTCAAAGGGATGATACCACTTTCTTTAGAACAGATATTCCAGACCAGTCAGTCTCTTAAAGACCAGGGCTGGAATTACAAAATGCAGGCATCAGTATTGGAAATATATAATGAGACCATCAAAGATTTGTTATTGTCAAATCGGTCAAGTGGGATTGACCAAACACGAGCAGAAAATAGTGTTCATGGAAAACAGTACACTATTAGACATGACAAAAATGGAAACACACATGTTTTGGACCTCACCATTGTCGATGTTTGTAGTGCCGATGAGATTTCCTCCCTCCTCCAAAAGGCTGCCCAAATCAGGTCAATGGGAAGAACACAAATGAATGAACAATCATCAAGAAGCCACTTTGTCGTTACTTTGCGCATATGTGGTATAAACGAGAACACTGAACAACAAGTACAAGGTGTCTTAAACCTGATTGATTTGGCTGGAAGTGAAAGACTTTCAAGGAGTGGGGCCACTGGGGAACGTTTGAAGGAAACTCAGGCTATCAACCAAAGTCTCTCCTGTTTGAGCAATGTCATATTTGCTTTGGCAAAGAAAGAAGAGCATGTTCCTTTCAGGGATTCAAAACTTACACACCTACTTCAGCCATGTCTTGAAGGGGATTCCAAAACTTTGATGTTTGTCAACATCTCACCTGATCAATCTTCAATTGACGAGTCACTTTGCTCTCTTCGATTTGCGTCTAGAGTCAATGCTGTGAAATTGGGGATTCACAATGTCAGACCTAGACATCCACTCAATGTTTAG

Protein sequence

>Msa0613630

MASRNQNRPPQNHSNVGSEEMERQRVSGRAKARAPLTAMVNNATASNKKMEQMVDLIKRLKLCVQWCANKIETLHSEVESAVKKCSDTEIEMKNKTEELQSDLNSANEAYRRLETEKSIIAESLNDTRDLNKELQDRLKSLKDSQSEAIKHKEMFREELKKITDDRDRLQGKLNDVMLEREKYIKFKYETYSKLDKLASKTEALEETCSSQKEKINILEQKLHAEREKLEMADLSAMETRATFEEQKRFIRKLQDQLADKEFQVVEGEKLRKKLHNTVLELKGNIRVFCRVRPLLRDRSETKTVVYYPTSIEMLGRGIELEQNGQKQLFTFDKVFNHDASQHDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPDSPDLKGMIPLSLEQIFQTSQSLKDQGWNYKMQASVLEIYNETIKDLLLSNRSSGIDQTRAENSVHGKQYTIRHDKNGNTHVLDLTIVDVCSADEISSLLQKAAQIRSMGRTQMNEQSSRSHFVVTLRICGINENTEQQVQGVLNLIDLAGSERLSRSGATGERLKETQAINQSLSCLSNVIFALAKKEEHVPFRDSKLTHLLQPCLEGDSKTLMFVNISPDQSSIDESLCSLRFASRVNAVKLGIHNVRPRHPLNV*