AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480730 MtrunA17_Chr4g0049011 97.314 633 17 0 39 671 1 633 0.0 1273
Msa0480730 MtrunA17_Chr2g0280421 65.419 561 173 5 109 660 222 770 0.0 723
Msa0480730 MtrunA17_Chr2g0280421 36.264 273 136 8 1 243 1 265 7.77e-31 129
Msa0480730 MtrunA17_Chr4g0042061 49.369 792 269 19 1 670 1 782 0.0 648
Msa0480730 MtrunA17_Chr2g0319271 60.219 548 198 4 132 670 214 750 0.0 638
Msa0480730 MtrunA17_Chr7g0272871 42.782 381 188 8 289 659 94 454 3.71e-84 280
Msa0480730 MtrunA17_Chr2g0312631 43.207 368 195 4 292 659 359 712 1.86e-83 284
Msa0480730 MtrunA17_Chr7g0271961 42.779 367 177 7 305 663 389 730 2.46e-82 280
Msa0480730 MtrunA17_Chr1g0191851 40.741 378 200 6 289 659 114 474 2.91e-82 276
Msa0480730 MtrunA17_Chr1g0192481 42.276 369 182 9 305 663 46 393 1.56e-81 269
Msa0480730 MtrunA17_Chr5g0411971 36.492 496 259 10 201 659 248 724 1.32e-80 276
Msa0480730 MtrunA17_Chr5g0421591 38.681 455 237 9 227 658 263 698 2.25e-80 273
Msa0480730 MtrunA17_Chr5g0407791 36.902 439 239 9 226 656 802 1210 2.65e-78 272
Msa0480730 MtrunA17_Chr5g0421521 42.328 378 197 6 283 658 340 698 2.78e-78 268
Msa0480730 MtrunA17_Chr1g0195111 40.599 367 190 7 305 663 384 730 3.77e-78 269
Msa0480730 MtrunA17_Chr8g0369881 36.404 456 247 11 222 656 763 1196 4.85e-78 271
Msa0480730 MtrunA17_Chr3g0102921 41.436 362 199 8 305 659 426 781 2.23e-74 259
Msa0480730 MtrunA17_Chr7g0257301 38.318 428 229 13 260 659 326 746 5.34e-74 258
Msa0480730 MtrunA17_Chr5g0447041 38.718 390 199 7 305 659 422 806 2.29e-73 257
Msa0480730 MtrunA17_Chr1g0191181 36.649 382 222 6 278 656 49 413 8.21e-67 231
Msa0480730 MtrunA17_Chr2g0327581 36.915 363 207 9 308 657 39 392 2.08e-56 207
Msa0480730 MtrunA17_Chr3g0122121 37.978 366 174 11 318 657 99 437 8.30e-56 206
Msa0480730 MtrunA17_Chr1g0178411 37.778 360 194 11 317 657 13 361 4.89e-55 203
Msa0480730 MtrunA17_Chr7g0266631 37.500 360 195 11 317 657 9 357 1.30e-54 201
Msa0480730 MtrunA17_Chr8g0377731 37.368 380 185 11 303 657 40 391 2.36e-54 201
Msa0480730 MtrunA17_Chr4g0045381 36.957 368 176 10 317 657 193 531 3.46e-53 198
Msa0480730 MtrunA17_Chr1g0182151 36.932 352 204 8 317 657 54 398 1.10e-52 196
Msa0480730 MtrunA17_Chr2g0322291 40.379 317 148 8 362 657 130 426 5.09e-52 194
Msa0480730 MtrunA17_Chr4g0069141 35.000 380 185 10 308 657 144 491 1.31e-50 191
Msa0480730 MtrunA17_Chr5g0427481 35.530 349 208 7 318 657 18 358 2.26e-50 189
Msa0480730 MtrunA17_Chr8g0367581 35.833 360 204 8 304 662 133 466 5.42e-50 188
Msa0480730 MtrunA17_Chr3g0134191 34.771 371 196 10 318 657 9 364 8.31e-50 187
Msa0480730 MtrunA17_Chr1g0193221 35.530 349 183 9 318 653 4 323 2.15e-48 183
Msa0480730 MtrunA17_Chr1g0153061 35.054 368 199 12 318 657 9 364 4.53e-48 182
Msa0480730 MtrunA17_Chr4g0053211 34.409 372 202 12 317 657 12 372 1.33e-47 181
Msa0480730 MtrunA17_Chr3g0132921 34.270 356 204 9 317 657 9 349 1.92e-47 175
Msa0480730 MtrunA17_Chr2g0307481 35.227 352 193 9 318 657 69 397 4.95e-47 176
Msa0480730 MtrunA17_Chr1g0152231 35.065 308 167 6 362 656 46 333 5.86e-45 172
Msa0480730 MtrunA17_Chr4g0035661 35.447 347 192 11 317 658 89 408 1.08e-43 169
Msa0480730 MtrunA17_Chr4g0062291 35.376 359 192 10 318 660 124 458 2.78e-43 166
Msa0480730 MtrunA17_Chr3g0145071 35.817 349 188 12 317 658 99 418 5.58e-43 167
Msa0480730 MtrunA17_Chr8g0386891 54.676 139 63 0 521 659 21 159 9.52e-42 157
Msa0480730 MtrunA17_Chr7g0269681 45.506 178 97 0 486 663 23 200 1.91e-41 157
Msa0480730 MtrunA17_Chr6g0483701 34.006 347 196 7 318 656 31 352 1.78e-40 159
Msa0480730 MtrunA17_Chr6g0484501 48.000 175 91 0 486 660 16 190 2.23e-40 147
Msa0480730 MtrunA17_Chr4g0070001 32.308 390 207 13 302 667 125 481 8.06e-40 157
Msa0480730 MtrunA17_Chr7g0238581 32.378 349 195 10 318 652 26 347 2.06e-39 154
Msa0480730 MtrunA17_Chr7g0258991 33.333 351 200 10 315 658 71 394 3.16e-39 155
Msa0480730 MtrunA17_Chr3g0142261 33.699 365 183 11 318 656 20 351 4.71e-39 155
Msa0480730 MtrunA17_Chr5g0445211 32.884 371 199 13 310 657 67 410 1.11e-38 154
Msa0480730 MtrunA17_Chr5g0398521 30.133 375 210 10 314 658 54 406 1.35e-38 153
Msa0480730 MtrunA17_Chr3g0101021 32.808 317 177 8 362 657 108 409 1.65e-38 153
Msa0480730 MtrunA17_Chr4g0036001 31.319 364 214 9 297 650 3 340 1.05e-37 150
Msa0480730 MtrunA17_Chr6g0485471 34.462 325 180 10 351 670 154 450 8.22e-37 146
Msa0480730 MtrunA17_Chr8g0390991 51.923 156 75 0 504 659 4 159 1.71e-36 144
Msa0480730 MtrunA17_Chr8g0372171 32.113 355 184 11 318 651 20 338 6.79e-36 145
Msa0480730 MtrunA17_Chr7g0245931 30.352 369 210 8 314 657 49 395 8.21e-36 144
Msa0480730 MtrunA17_Chr5g0405181 31.624 351 191 9 318 651 21 339 1.26e-35 144
Msa0480730 MtrunA17_Chr2g0331761 31.847 314 183 6 351 659 224 511 1.02e-34 140
Msa0480730 MtrunA17_Chr8g0386901 42.289 201 100 7 273 465 440 632 3.62e-32 132
Msa0480730 MtrunA17_Chr8g0390981 38.967 213 121 6 253 462 454 660 6.36e-32 132
Msa0480730 MtrunA17_Chr1g0187411 31.856 361 211 12 318 661 131 473 8.19e-32 132
Msa0480730 MtrunA17_Chr2g0295881 31.481 324 177 8 351 656 237 533 5.61e-31 129
Msa0480730 MtrunA17_Chr6g0484511 40.936 171 85 5 305 467 277 439 3.01e-30 125
Msa0480730 MtrunA17_Chr4g0067421 30.031 323 181 7 351 656 245 539 5.46e-30 126
Msa0480730 MtrunA17_Chr7g0269691 40.854 164 90 5 305 465 388 547 1.76e-28 120
Msa0480730 MtrunA17_Chr3g0142841 29.167 312 172 11 364 658 145 424 2.29e-20 96.3
Msa0480730 MtrunA17_Chr6g0470541 26.235 324 205 10 318 635 6 301 1.56e-17 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480730 AT4G05190.2 63.604 566 187 5 109 660 200 760 0.0 700
Msa0480730 AT4G05190.2 31.200 250 138 8 21 252 13 246 1.57e-15 80.9
Msa0480730 AT4G05190.1 63.604 566 187 5 109 660 213 773 0.0 700
Msa0480730 AT4G05190.1 32.000 275 148 9 1 252 1 259 3.67e-19 92.8
Msa0480730 AT4G21270.1 59.641 612 229 4 59 660 173 776 0.0 699
Msa0480730 AT4G27180.1 59.232 547 195 7 132 665 206 737 0.0 618
Msa0480730 AT4G27180.2 59.232 547 195 7 132 665 206 737 0.0 618
Msa0480730 AT5G54670.1 58.000 550 201 8 132 671 215 744 0.0 607
Msa0480730 AT5G54670.2 58.000 550 201 8 132 671 215 744 0.0 607
Msa0480730 AT5G54670.3 58.000 550 201 8 132 671 155 684 0.0 606
Msa0480730 AT1G72250.1 46.175 366 180 5 296 659 470 820 7.30e-91 307
Msa0480730 AT1G72250.3 46.175 366 180 5 296 659 491 841 9.71e-91 306
Msa0480730 AT1G72250.2 46.175 366 180 5 296 659 479 829 9.74e-91 306
Msa0480730 AT1G72250.4 46.175 366 180 5 296 659 490 840 1.12e-90 306
Msa0480730 AT1G73860.2 35.880 602 280 15 103 659 218 758 1.29e-87 294
Msa0480730 AT1G73860.1 35.880 602 280 15 103 659 301 841 3.50e-87 294
Msa0480730 AT5G27550.2 43.264 386 196 6 278 659 93 459 8.42e-86 285
Msa0480730 AT5G27550.1 43.264 386 196 6 278 659 93 459 8.42e-86 285
Msa0480730 AT2G22610.2 42.440 377 200 3 283 659 383 742 7.26e-85 288
Msa0480730 AT2G22610.1 42.440 377 200 3 283 659 383 742 8.78e-85 288
Msa0480730 AT2G22610.3 42.440 377 200 3 283 659 384 743 1.22e-84 288
Msa0480730 AT1G18410.5 45.055 364 163 8 305 659 467 802 6.88e-83 282
Msa0480730 AT1G18410.3 44.687 367 168 8 305 659 477 820 1.38e-82 281
Msa0480730 AT1G18410.2 44.687 367 168 8 305 659 477 820 1.38e-82 281
Msa0480730 AT1G18410.1 45.055 364 163 8 305 659 620 955 2.10e-81 280
Msa0480730 AT1G18410.4 44.687 367 168 8 305 659 620 963 5.11e-81 279
Msa0480730 AT1G63640.2 42.199 391 199 8 273 659 429 796 1.28e-80 277
Msa0480730 AT1G63640.5 42.132 394 202 8 273 659 419 793 1.32e-80 276
Msa0480730 AT1G63640.1 42.132 394 202 8 273 659 429 803 1.35e-80 277
Msa0480730 AT1G63640.4 42.132 394 202 8 273 659 429 803 1.35e-80 277
Msa0480730 AT5G41310.1 42.175 377 171 7 291 659 398 735 1.49e-80 275
Msa0480730 AT1G63640.3 42.132 394 202 8 273 659 429 803 1.65e-80 276
Msa0480730 AT1G09170.4 38.498 426 241 8 243 663 358 767 1.97e-79 270
Msa0480730 AT1G09170.3 38.498 426 241 8 243 663 358 767 3.44e-79 269
Msa0480730 AT1G09170.7 38.498 426 241 8 243 663 358 767 3.44e-79 269
Msa0480730 AT2G47500.2 41.713 362 191 5 305 663 387 731 3.90e-79 271
Msa0480730 AT1G09170.2 38.498 426 241 8 243 663 358 767 4.45e-79 270
Msa0480730 AT2G47500.1 41.713 362 191 5 305 663 387 731 5.38e-79 271
Msa0480730 AT1G09170.5 38.498 426 241 8 243 663 358 767 1.45e-78 271
Msa0480730 AT5G27000.1 41.509 371 181 7 305 663 382 728 5.05e-77 266
Msa0480730 AT5G65930.2 37.071 437 249 8 222 656 797 1209 7.37e-77 268
Msa0480730 AT5G65930.1 36.697 436 252 7 222 656 796 1208 9.08e-77 268
Msa0480730 AT5G65930.3 36.697 436 252 7 222 656 803 1215 9.37e-77 268
Msa0480730 AT3G44730.1 40.166 361 189 7 307 659 367 708 3.02e-76 265
Msa0480730 AT3G44730.4 40.166 361 189 7 307 659 367 708 3.02e-76 265
Msa0480730 AT3G44730.2 40.166 361 189 7 307 659 412 753 5.01e-76 265
Msa0480730 AT3G44730.3 40.166 361 189 7 307 659 412 753 5.01e-76 265
Msa0480730 AT1G55550.1 38.542 384 203 7 283 659 57 414 1.65e-75 259
Msa0480730 AT3G10310.2 39.753 405 208 11 270 659 309 692 1.72e-74 258
Msa0480730 AT3G10310.1 39.753 405 208 11 270 659 309 692 1.78e-74 258
Msa0480730 AT5G27950.1 37.135 377 217 7 283 656 45 404 3.24e-67 232
Msa0480730 AT1G09170.1 35.765 425 218 8 243 663 358 731 5.15e-67 238
Msa0480730 AT1G09170.6 37.500 384 219 8 243 621 358 725 1.55e-65 230
Msa0480730 AT1G09170.8 37.500 384 219 8 243 621 358 725 1.55e-65 230
Msa0480730 AT3G45850.2 37.222 360 191 9 317 657 55 398 1.85e-56 207
Msa0480730 AT3G45850.1 37.222 360 191 9 317 657 55 398 1.85e-56 207
Msa0480730 AT2G37420.1 37.288 354 199 9 317 657 48 391 3.44e-55 204
Msa0480730 AT2G37420.2 37.288 354 199 9 317 657 48 391 3.44e-55 204
Msa0480730 AT2G36200.1 38.333 360 192 11 317 657 12 360 1.18e-54 202
Msa0480730 AT2G28620.1 37.360 356 196 10 317 657 50 393 2.70e-54 201
Msa0480730 AT2G36200.2 38.333 360 192 11 317 657 12 360 2.71e-54 201
Msa0480730 AT2G28620.3 37.360 356 196 10 317 657 50 393 2.75e-54 201
Msa0480730 AT2G28620.2 37.360 356 196 10 317 657 50 393 2.75e-54 201
Msa0480730 AT3G19050.1 37.017 362 184 10 317 657 193 531 3.13e-52 196
Msa0480730 AT3G44050.1 40.220 363 171 13 317 657 93 431 5.17e-52 195
Msa0480730 AT4G14150.1 38.199 322 157 8 360 657 124 427 1.29e-50 191
Msa0480730 AT3G23670.2 37.461 323 160 8 359 657 128 432 3.02e-49 186
Msa0480730 AT3G23670.1 37.461 323 160 8 359 657 128 432 4.77e-49 186
Msa0480730 AT3G17360.2 35.422 367 183 9 317 657 168 506 1.03e-48 185
Msa0480730 AT3G17360.3 35.422 367 183 9 317 657 168 506 1.13e-48 185
Msa0480730 AT3G17360.1 35.422 367 183 9 317 657 168 506 1.33e-48 185
Msa0480730 AT3G50240.2 34.605 367 202 10 318 657 26 381 5.31e-48 182
Msa0480730 AT5G65460.2 30.088 452 270 9 210 653 36 449 5.66e-48 182
Msa0480730 AT5G65460.6 30.324 432 257 8 229 652 53 448 5.89e-48 182
Msa0480730 AT5G65460.4 30.088 452 270 9 210 653 36 449 7.10e-48 182
Msa0480730 AT3G50240.4 34.605 367 202 10 318 657 26 381 7.40e-48 182
Msa0480730 AT3G50240.1 34.605 367 202 10 318 657 26 381 7.53e-48 182
Msa0480730 AT5G65460.1 30.088 452 270 9 210 653 36 449 8.06e-48 182
Msa0480730 AT3G10180.1 35.244 349 185 7 318 653 4 324 9.46e-48 182
Msa0480730 AT3G10180.2 35.244 349 185 7 318 653 4 324 9.57e-48 182
Msa0480730 AT5G60930.1 37.618 319 174 10 362 657 45 361 5.59e-47 179
Msa0480730 AT5G60930.3 37.618 319 174 10 362 657 45 361 6.79e-47 179
Msa0480730 AT5G60930.2 37.618 319 174 10 362 657 45 361 8.62e-47 179
Msa0480730 AT5G65460.3 29.605 456 274 9 210 653 36 456 2.11e-46 178
Msa0480730 AT4G39050.1 35.616 365 199 12 301 658 82 417 4.68e-46 176
Msa0480730 AT2G21380.2 36.389 360 185 14 310 658 97 423 6.36e-46 176
Msa0480730 AT2G21380.1 36.389 360 185 14 310 658 97 423 6.36e-46 176
Msa0480730 AT5G47820.2 33.244 373 205 10 317 657 11 371 6.21e-45 173
Msa0480730 AT5G47820.1 33.244 373 205 10 317 657 11 371 6.21e-45 173
Msa0480730 AT1G59540.1 36.000 300 165 7 364 656 46 325 6.78e-45 172
Msa0480730 AT5G10470.1 29.929 421 253 8 247 653 61 453 2.42e-43 169
Msa0480730 AT5G10470.2 29.929 421 253 8 247 653 61 453 2.58e-43 168
Msa0480730 AT5G06670.2 33.616 354 201 11 312 658 61 387 2.89e-43 168
Msa0480730 AT5G06670.3 33.616 354 201 11 312 658 61 387 2.89e-43 168
Msa0480730 AT5G06670.5 33.616 354 201 11 312 658 61 387 3.60e-43 166
Msa0480730 AT5G06670.8 33.616 354 201 11 312 658 61 387 4.88e-43 166
Msa0480730 AT5G06670.4 33.616 354 201 11 312 658 61 387 4.88e-43 166
Msa0480730 AT5G06670.7 33.616 354 201 11 312 658 61 387 4.88e-43 166
Msa0480730 AT1G18550.1 36.213 301 165 7 362 657 204 482 7.67e-43 165
Msa0480730 AT1G21730.1 36.080 352 191 12 314 658 72 396 1.70e-42 165
Msa0480730 AT3G49650.1 34.402 343 198 7 323 660 29 349 2.29e-42 164
Msa0480730 AT5G06670.6 33.058 363 200 12 312 658 61 396 9.73e-42 163
Msa0480730 AT5G06670.1 33.058 363 200 12 312 658 61 396 9.73e-42 163
Msa0480730 AT3G63480.2 33.520 358 196 12 317 657 3 335 1.80e-41 157
Msa0480730 AT3G12020.4 33.705 359 204 10 307 658 59 390 7.65e-41 160
Msa0480730 AT3G12020.1 33.705 359 204 10 307 658 59 390 7.65e-41 160
Msa0480730 AT3G12020.3 33.705 359 204 10 307 658 59 390 1.48e-40 160
Msa0480730 AT3G12020.2 33.705 359 204 10 307 658 59 390 1.48e-40 160
Msa0480730 AT3G63480.1 33.611 360 197 12 317 657 3 339 2.94e-40 154
Msa0480730 AT3G54870.2 32.923 325 175 9 356 658 144 447 3.93e-40 158
Msa0480730 AT3G54870.1 32.923 325 175 9 356 658 144 447 4.11e-40 158
Msa0480730 AT3G54870.3 32.923 325 175 9 356 658 144 447 4.18e-40 158
Msa0480730 AT1G18370.1 33.987 306 171 6 362 661 78 358 5.78e-39 155
Msa0480730 AT1G12430.1 31.267 371 202 11 318 658 71 418 2.33e-38 153
Msa0480730 AT1G12430.2 31.267 371 202 11 318 658 71 418 2.53e-38 152
Msa0480730 AT3G50240.3 37.234 282 147 7 401 657 3 279 3.12e-38 152
Msa0480730 AT5G02370.1 30.252 357 188 8 317 652 20 336 1.09e-37 148
Msa0480730 AT4G38950.3 32.797 311 167 7 362 656 60 344 1.08e-36 147
Msa0480730 AT4G38950.5 32.797 311 167 7 362 656 60 344 1.08e-36 147
Msa0480730 AT4G38950.4 32.797 311 167 7 362 656 60 344 1.08e-36 147
Msa0480730 AT4G38950.1 32.797 311 167 7 362 656 60 344 1.08e-36 147
Msa0480730 AT4G38950.2 32.797 311 167 7 362 656 60 344 1.08e-36 147
Msa0480730 AT3G51150.2 33.238 349 188 10 318 651 18 336 1.35e-36 147
Msa0480730 AT3G51150.4 33.238 349 188 10 318 651 18 336 1.35e-36 147
Msa0480730 AT3G51150.3 33.238 349 188 10 318 651 18 336 1.35e-36 147
Msa0480730 AT3G51150.1 33.238 349 188 10 318 651 18 336 1.42e-36 147
Msa0480730 AT3G43210.3 37.288 295 153 8 362 650 74 342 1.53e-36 147
Msa0480730 AT3G43210.5 37.288 295 153 8 362 650 74 342 1.53e-36 147
Msa0480730 AT3G43210.2 37.288 295 153 8 362 650 74 342 1.53e-36 147
Msa0480730 AT3G43210.4 37.288 295 153 8 362 650 74 342 1.53e-36 147
Msa0480730 AT3G43210.1 37.288 295 153 8 362 650 74 342 1.53e-36 147
Msa0480730 AT1G01950.2 30.352 369 210 10 314 657 57 403 1.65e-35 144
Msa0480730 AT1G01950.1 30.352 369 210 10 314 657 57 403 2.11e-35 144
Msa0480730 AT5G66310.2 34.783 299 158 6 362 651 67 337 2.17e-35 144
Msa0480730 AT5G66310.3 34.783 299 158 6 362 651 67 337 2.17e-35 144
Msa0480730 AT5G66310.1 34.783 299 158 6 362 651 67 337 2.17e-35 144
Msa0480730 AT1G01950.3 30.352 369 210 10 314 657 57 403 2.53e-35 143
Msa0480730 AT4G14330.1 34.641 306 172 10 362 661 89 372 3.10e-35 143
Msa0480730 AT3G16060.1 32.484 314 181 7 351 659 208 495 1.03e-34 140
Msa0480730 AT2G21300.2 30.623 369 210 12 297 650 3 340 2.08e-34 140
Msa0480730 AT2G21300.4 30.623 369 210 12 297 650 3 340 2.08e-34 140
Msa0480730 AT2G21300.3 30.623 369 210 12 297 650 3 340 2.08e-34 140
Msa0480730 AT2G21300.1 30.623 369 210 12 297 650 3 340 2.08e-34 140
Msa0480730 AT2G21300.5 30.623 369 210 12 297 650 3 340 2.08e-34 140
Msa0480730 AT4G24170.1 33.876 307 157 10 359 651 47 321 2.13e-34 140
Msa0480730 AT4G24170.2 33.876 307 157 10 359 651 47 321 2.13e-34 140
Msa0480730 AT5G27950.2 35.887 248 148 4 410 656 1 238 2.48e-34 137
Msa0480730 AT3G20150.1 33.333 318 172 10 362 656 136 436 2.68e-34 140
Msa0480730 AT3G20150.2 33.333 318 172 10 362 656 136 436 2.83e-34 140
Msa0480730 AT1G59540.2 35.573 253 137 6 410 656 1 233 2.16e-32 134
Msa0480730 AT3G16630.2 29.917 361 203 9 318 656 194 526 6.60e-30 126
Msa0480730 AT3G16630.1 29.917 361 203 9 318 656 194 526 6.60e-30 126
Msa0480730 AT1G01950.4 31.206 282 153 7 397 657 1 262 7.91e-26 113
Msa0480730 AT5G42490.2 32.922 243 132 5 362 599 56 272 1.63e-22 103
Msa0480730 AT5G42490.1 32.922 243 132 5 362 599 56 272 1.80e-22 103
Msa0480730 AT3G51150.5 42.553 141 67 3 521 651 47 183 1.09e-20 97.8
Msa0480730 AT5G65460.5 30.476 210 124 3 444 652 14 202 1.22e-19 94.4
Msa0480730 AT5G23910.2 28.808 302 174 13 357 653 54 319 5.92e-19 92.0
Msa0480730 AT5G23910.1 28.808 302 174 13 357 653 50 315 5.93e-19 91.7
Msa0480730 AT1G20060.9 29.450 309 181 10 364 658 165 450 3.79e-17 86.3
Msa0480730 AT1G20060.8 29.450 309 181 10 364 658 165 450 3.86e-17 86.3
Msa0480730 AT1G20060.4 29.450 309 181 10 364 658 165 450 3.99e-17 86.3
Msa0480730 AT1G20060.3 29.450 309 181 10 364 658 165 450 4.07e-17 86.3
Msa0480730 AT1G20060.7 29.450 309 181 10 364 658 165 450 4.09e-17 86.3
Msa0480730 AT1G20060.5 29.450 309 181 10 364 658 165 450 4.32e-17 86.3
Msa0480730 AT1G20060.10 29.450 309 181 10 364 658 165 450 4.39e-17 86.3
Msa0480730 AT1G20060.2 29.450 309 181 10 364 658 165 450 4.44e-17 86.3
Msa0480730 AT1G20060.6 29.450 309 181 10 364 658 165 450 4.55e-17 86.3
Msa0480730 AT1G20060.1 31.651 218 118 9 364 573 165 359 7.12e-13 72.8

Find 145 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAGCATGTTCCTTTC+AGG 0.194253 3_3:-86251448 Msa0480730:CDS
ATACTCAAAATTGGATAAAT+TGG 0.218313 3_3:-86254286 Msa0480730:CDS
TAGAGTCAATGCTGTGAAAT+TGG 0.225841 3_3:-86250775 Msa0480730:CDS
AAATGGAAACACACATGTTT+TGG 0.247585 3_3:-86252279 Msa0480730:CDS
AAACACAATAATACCTGATT+TGG 0.252458 3_3:+86252195 None:intergenic
GTTGACAAACATCAAAGTTT+TGG 0.254499 3_3:+86250854 None:intergenic
CCACTCAATGTTTAGAATCT+TGG 0.262112 3_3:-86250726 Msa0480730:exon
TAAGATCTCTTGTATCATTA+AGG 0.268393 3_3:+86254871 None:intergenic
AGGGGTGTGATTTGTGAAAT+TGG 0.274493 3_3:+86256486 None:intergenic
ATATGAAACATACTCAAAAT+TGG 0.276205 3_3:-86254295 Msa0480730:CDS
GCTTAATGAGAAGATGAAAA+AGG 0.279628 3_3:-86256012 Msa0480730:CDS
ACCTGATTTGGGCAGCCTTT+TGG 0.295707 3_3:+86252207 None:intergenic
TGACAATAACAAATCTTTGA+TGG 0.318383 3_3:+86252379 None:intergenic
GCTTATGGACAAACAGGTTC+AGG 0.319847 3_3:-86252642 Msa0480730:CDS
CTGCACCAGTTGTGATATTT+CGG 0.332276 3_3:+86253333 None:intergenic
AAAGGAGAAAATAAATATAC+TGG 0.354702 3_3:-86254120 Msa0480730:CDS
AGAGTCAATGCTGTGAAATT+GGG 0.355203 3_3:-86250774 Msa0480730:CDS
CACTTCCAGCCAAATCAATC+AGG 0.357452 3_3:+86251677 None:intergenic
TGATTTGTGAAATTGGGATT+TGG 0.359961 3_3:+86256493 None:intergenic
CGAGCAGAAAATAGTGTTCA+TGG 0.366475 3_3:-86252329 Msa0480730:CDS
GAGCAATGTCATATTTGCTT+TGG 0.367142 3_3:-86251477 Msa0480730:CDS
GGCATTGAGTTGGAACAAAA+TGG 0.370931 3_3:-86253535 Msa0480730:intron
AGAGTGTAGAACGAAATAAT+TGG 0.372051 3_3:+86250613 None:intergenic
TGTCTTAAACCTGATTGATT+TGG 0.373703 3_3:-86251686 Msa0480730:CDS
GAAGGTAGGGTTTGCGGAGG+TGG 0.377448 3_3:+86256450 None:intergenic
ATGAAGCGTTTCAATCTTGT+TGG 0.379069 3_3:+86255494 None:intergenic
AAAGAATTTCAAGTAGTTGA+AGG 0.379952 3_3:-86253795 Msa0480730:CDS
TTGTTCACCATTGCAGTTAA+CGG 0.384857 3_3:+86256107 None:intergenic
GGGGTGTGATTTGTGAAATT+GGG 0.389715 3_3:+86256487 None:intergenic
TCCAAAAGGCTGCCCAAATC+AGG 0.391053 3_3:-86252208 Msa0480730:intron
AAGATTTGTTATTGTCAAAT+CGG 0.396139 3_3:-86252373 Msa0480730:CDS
CTCTTGTGTCTTCAGGTCAA+TGG 0.401417 3_3:-86251885 Msa0480730:intron
TGATACAAGAGATCTTAATA+AGG 0.404932 3_3:-86254865 Msa0480730:CDS
AGATCTTAATAAGGAATTGC+AGG 0.409956 3_3:-86254856 Msa0480730:CDS
GGCTTAAGCTTTGTGTTCAA+TGG 0.411472 3_3:-86255521 Msa0480730:CDS
GTTAAGAAGTGTTCTGATAC+TGG 0.413284 3_3:-86255453 Msa0480730:intron
AGGTGGAGTTAGAAGAGAAA+GGG 0.414372 3_3:+86256467 None:intergenic
CAGGCCTACCCATCATTGTA+TGG 0.417511 3_3:+86252613 None:intergenic
CTTTCAAGGAGTGGGGCCAC+TGG 0.419503 3_3:-86251649 Msa0480730:CDS
GGTATCATCCCTTTGAGATC+TGG 0.431597 3_3:+86252585 None:intergenic
ATGGAGAGACAAAGAGTGTC+TGG 0.432987 3_3:-86256149 Msa0480730:CDS
CCTTTGAGATCTGGAGAGTC+AGG 0.439610 3_3:+86252594 None:intergenic
GGCCACTGGGGAACGTTTGA+AGG 0.442182 3_3:-86251635 Msa0480730:CDS
AAATATGACATTGCTCAAAC+AGG 0.446159 3_3:+86251484 None:intergenic
TTTCAAGGAGTGGGGCCACT+GGG 0.447460 3_3:-86251648 Msa0480730:CDS
AACACAATAATACCTGATTT+GGG 0.450436 3_3:+86252196 None:intergenic
TGCTCAAACAGGAGAGACTT+TGG 0.452914 3_3:+86251495 None:intergenic
GATGGCTGATTTATCTGCTA+TGG 0.457746 3_3:-86253883 Msa0480730:CDS
AAATGATGTCATGTTAGAAC+GGG 0.458801 3_3:-86254337 Msa0480730:CDS
CTGGAAGTGAAAGACTTTCA+AGG 0.460124 3_3:-86251663 Msa0480730:CDS
GTCCTTCTGACTCCGTCAAC+TGG 0.460325 3_3:-86256419 Msa0480730:intron
AGAAGAGCATGTTCCTTTCA+GGG 0.462036 3_3:-86251447 Msa0480730:CDS
TCTTGTGTCTTCAGGTCAAT+GGG 0.464776 3_3:-86251884 Msa0480730:intron
GTCGTTACTTTGCGCATATG+TGG 0.465467 3_3:-86251821 Msa0480730:CDS
TTTCACCGAAATATCACAAC+TGG 0.467691 3_3:-86253338 Msa0480730:CDS
GTCAATAGAAATGCTTGGCC+GGG 0.470648 3_3:-86253557 Msa0480730:CDS
CATGTTTCTTGTAGAAATAG+AGG 0.474231 3_3:-86250647 Msa0480730:three_prime_UTR
AGACAAACCTTATTATCAAA+AGG 0.474999 3_3:+86255984 None:intergenic
CGTCAATAGAAATGCTTGGC+CGG 0.476762 3_3:-86253558 Msa0480730:CDS
TGCTGAAAGGGAGAAGTTAG+AGG 0.476851 3_3:-86254084 Msa0480730:intron
AAAACTTACACACCTACTTC+AGG 0.477645 3_3:-86251420 Msa0480730:intron
GGAGACTTGTTCCTCTCAAA+AGG 0.477958 3_3:-86254138 Msa0480730:CDS
TGGCTTCTCGGAATCAGAAC+CGG 0.478047 3_3:-86256307 Msa0480730:CDS
GAATTACCTTGTAGCCATCA+AGG 0.484630 3_3:+86253305 None:intergenic
TTAAACCTGATTGATTTGGC+TGG 0.484981 3_3:-86251682 Msa0480730:CDS
GAGGTGGAGTTAGAAGAGAA+AGG 0.486188 3_3:+86256466 None:intergenic
TCGTAAACTACAAGATCAAT+TGG 0.486302 3_3:-86253823 Msa0480730:CDS
ATATTACTAGGCATCAGTAT+TGG 0.491971 3_3:-86252417 Msa0480730:intron
GGATTGCAGCCATGTCTTGA+AGG 0.492427 3_3:-86250882 Msa0480730:intron
CTTTAAGAGACTGACTGGTC+TGG 0.494270 3_3:+86252541 None:intergenic
CTGGTGCAGAGTGCCCTTGA+TGG 0.494301 3_3:-86253319 Msa0480730:CDS
GCAAAAGTTACATGCTGAAA+GGG 0.498320 3_3:-86254096 Msa0480730:CDS
AGGACGATGGCGAGAAGGTA+GGG 0.501260 3_3:+86256437 None:intergenic
TTTGTGAAATTGGGATTTGG+TGG 0.503298 3_3:+86256496 None:intergenic
GCTTGGCCGGGGCATTGAGT+TGG 0.504578 3_3:-86253545 Msa0480730:CDS
TGGCGAGAAGGTAGGGTTTG+CGG 0.507641 3_3:+86256444 None:intergenic
AGTCTCTTAAAGACCAGGGC+TGG 0.508242 3_3:-86252530 Msa0480730:CDS
GTGAAAGACTTTCAAGGAGT+GGG 0.510340 3_3:-86251657 Msa0480730:CDS
TCGTCAATTGAAGATTGATC+AGG 0.511344 3_3:+86250825 None:intergenic
GTTCACAAAAGATGATATAG+AGG 0.518156 3_3:-86256039 Msa0480730:CDS
GGGATTTGGTGGCTCGGTGA+AGG 0.525719 3_3:+86256507 None:intergenic
AAAACTGCACAACACTGTCT+TGG 0.526321 3_3:-86253757 Msa0480730:intron
GATTTCCTCCCTCCTCCAAA+AGG 0.527021 3_3:-86252222 Msa0480730:CDS
TTGGAATCCCCTTCAAGACA+TGG 0.527970 3_3:+86250873 None:intergenic
CTGACTCTCCAGATCTCAAA+GGG 0.533076 3_3:-86252593 Msa0480730:CDS
AAAGGTTGGATCTGAAGAGA+TGG 0.533214 3_3:-86256168 Msa0480730:intron
GGTGGAGTTAGAAGAGAAAG+GGG 0.535880 3_3:+86256468 None:intergenic
CAGTCAGTCTCTTAAAGACC+AGG 0.538247 3_3:-86252535 Msa0480730:CDS
AATATCTGTTCTAAAGAAAG+TGG 0.538396 3_3:+86252564 None:intergenic
GATTGCAGCCATGTCTTGAA+GGG 0.543595 3_3:-86250881 Msa0480730:intron
TAAATGATGTCATGTTAGAA+CGG 0.544042 3_3:-86254338 Msa0480730:CDS
TCTGAACGGTCTCGTAGTAA+AGG 0.547365 3_3:+86253607 None:intergenic
AAGGACGATGGCGAGAAGGT+AGG 0.547511 3_3:+86256436 None:intergenic
AGGCCTACCCATCATTGTAT+GGG 0.548855 3_3:+86252614 None:intergenic
GAGTGCCCTTGATGGCTACA+AGG 0.550430 3_3:-86253311 Msa0480730:intron
TCAGAAGGACGATGGCGAGA+AGG 0.551767 3_3:+86256432 None:intergenic
TAAACATTGAGTGGATGTCT+AGG 0.556673 3_3:+86250735 None:intergenic
CGCTACTGCAAGTAATGTAG+AGG 0.557272 3_3:-86256084 Msa0480730:CDS
AGCAAAAGTTACATGCTGAA+AGG 0.557415 3_3:-86254097 Msa0480730:CDS
TTTGTTCCAACTCAATGCCC+CGG 0.558295 3_3:+86253539 None:intergenic
CTGGTCTTTAAGAGACTGAC+TGG 0.561616 3_3:+86252536 None:intergenic
GGGCTGGAATTACAAAATGC+AGG 0.564720 3_3:-86252514 Msa0480730:intron
CCAAGATTCTAAACATTGAG+TGG 0.566179 3_3:+86250726 None:intergenic
CAAGCATTTCTATTGACGTA+GGG 0.573774 3_3:+86253563 None:intergenic
AAGTAAAACAGAGGCACTTG+AGG 0.575761 3_3:-86254262 Msa0480730:intron
ATAAATGACTTACATTGGAG+TGG 0.577293 3_3:+86256273 None:intergenic
ACAAGATTCGTACCAGTTGA+CGG 0.578548 3_3:+86256407 None:intergenic
TAGTTGAAGGAGAAAAGCTA+AGG 0.579762 3_3:-86253782 Msa0480730:CDS
GAGATCTGATTGAAGCTCCT+CGG 0.580804 3_3:+86254953 None:intergenic
GATGATCGTGATCGCCTACA+AGG 0.581309 3_3:-86254366 Msa0480730:CDS
GAGTCAATGCTGTGAAATTG+GGG 0.581648 3_3:-86250773 Msa0480730:CDS
CCTACGTCAATAGAAATGCT+TGG 0.587483 3_3:-86253562 Msa0480730:CDS
TCAATAGAAATGCTTGGCCG+GGG 0.588845 3_3:-86253556 Msa0480730:CDS
ATGTTTCTTGTAGAAATAGA+GGG 0.591156 3_3:-86250646 Msa0480730:three_prime_UTR
CCAAGCATTTCTATTGACGT+AGG 0.594729 3_3:+86253562 None:intergenic
TAGAGCGCCGTTAACTGCAA+TGG 0.596034 3_3:-86256114 Msa0480730:CDS
CCTGACTCTCCAGATCTCAA+AGG 0.596635 3_3:-86252594 Msa0480730:CDS
AATTACCTTGTAGCCATCAA+GGG 0.603883 3_3:+86253306 None:intergenic
AGTGAAAGACTTTCAAGGAG+TGG 0.608249 3_3:-86251658 Msa0480730:CDS
AACACTGAACAACAAGTACA+AGG 0.609494 3_3:-86251709 Msa0480730:CDS
TGCGCAAAGTAACGACAAAG+TGG 0.612147 3_3:+86251828 None:intergenic
TATTGTCAAATCGGTCAAGT+GGG 0.612810 3_3:-86252364 Msa0480730:CDS
TTATTGTCAAATCGGTCAAG+TGG 0.613155 3_3:-86252365 Msa0480730:CDS
TACCAGTTGACGGAGTCAGA+AGG 0.614400 3_3:+86256417 None:intergenic
AAACCCATACAATGATGGGT+AGG 0.615951 3_3:-86252617 Msa0480730:CDS
ATTGCAGCCATGTCTTGAAG+GGG 0.623975 3_3:-86250880 Msa0480730:intron
GGAACGTTTGAAGGAAACTC+AGG 0.625035 3_3:-86251626 Msa0480730:intron
TTCCTTCAAACGTTCCCCAG+TGG 0.633447 3_3:+86251633 None:intergenic
CAACCGTCTTCGTTTCTGAA+CGG 0.634819 3_3:+86253593 None:intergenic
GAAATTGGGATTTGGTGGCT+CGG 0.639823 3_3:+86256501 None:intergenic
GAGGAGGGAGGAAATCTCAT+CGG 0.641873 3_3:+86252229 None:intergenic
TGAAAGACTTTCAAGGAGTG+GGG 0.656119 3_3:-86251656 Msa0480730:CDS
TAAATTGGCAAGTAAAACAG+AGG 0.665756 3_3:-86254271 Msa0480730:CDS
GGTGAAAACGTCATGCTGAG+AGG 0.665998 3_3:+86253354 None:intergenic
GGCACTACAAACATCGACAA+TGG 0.670045 3_3:+86252250 None:intergenic
AGATGGTGGATCTTATTAAG+CGG 0.670837 3_3:-86255542 Msa0480730:CDS
GCTACTGCAAGTAATGTAGA+GGG 0.672984 3_3:-86256083 Msa0480730:CDS
TACAAACATCGACAATGGTG+AGG 0.674542 3_3:+86252255 None:intergenic
AGATCTCAATTCAGCTAACG+AGG 0.675031 3_3:-86254937 Msa0480730:CDS
TGACGGAGTCAGAAGGACGA+TGG 0.676298 3_3:+86256424 None:intergenic
TTCAAGGAGTGGGGCCACTG+GGG 0.688770 3_3:-86251647 Msa0480730:CDS
CGAGAAGGTAGGGTTTGCGG+AGG 0.696225 3_3:+86256447 None:intergenic
AGACCGTTCAGAAACGAAGA+CGG 0.700730 3_3:-86253596 Msa0480730:CDS
AGTCAGTCTCTTAAAGACCA+GGG 0.703830 3_3:-86252534 Msa0480730:CDS
GCGCATATGTGGTATAAACG+AGG 0.734281 3_3:-86251810 Msa0480730:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGAGAAATTTTTAATAA+TGG + chr3_3:86253125-86253144 None:intergenic 10.0%
!! TATTATCATTTAATTACTTT+AGG - chr3_3:86254046-86254065 Msa0480730:intron 10.0%
!!! GATTTTTATTTTACTTTTTT+TGG - chr3_3:86255975-86255994 Msa0480730:intron 10.0%
!! TTAACTACATGATAAAATTA+GGG + chr3_3:86250779-86250798 None:intergenic 15.0%
!!! AAGCTTAATTTTTTTATAGA+TGG - chr3_3:86250814-86250833 Msa0480730:CDS 15.0%
!!! TCAAATATTTTATCTTTAAG+CGG - chr3_3:86251349-86251368 Msa0480730:intron 15.0%
!!! TCTTTTAATGTTATAAAAGT+AGG - chr3_3:86251503-86251522 Msa0480730:CDS 15.0%
!! ATTATATTTATCACAAAAGA+CGG + chr3_3:86251727-86251746 None:intergenic 15.0%
!!! AAAAGCAAAATAAAGATTTT+TGG + chr3_3:86252056-86252075 None:intergenic 15.0%
!! GACAAAAAAAAAAATCATAT+TGG + chr3_3:86252341-86252360 None:intergenic 15.0%
!!! TAATTTTTTTTAGTTCTTCT+CGG + chr3_3:86252753-86252772 None:intergenic 15.0%
!!! GGGTTTTATTATATTTAATA+TGG - chr3_3:86253090-86253109 Msa0480730:intron 15.0%
!! AAATGATAAAATGTTTATGA+TGG - chr3_3:86253147-86253166 Msa0480730:intron 15.0%
!!! GCTAAATTATTTTTATTTCT+AGG - chr3_3:86253473-86253492 Msa0480730:intron 15.0%
!!! ATTTTCATATTCATATTACT+AGG - chr3_3:86254712-86254731 Msa0480730:intron 15.0%
!! GCATTATGAAATAAATAATA+AGG + chr3_3:86255393-86255412 None:intergenic 15.0%
!! TCAATAATGCAAAATTATAT+GGG + chr3_3:86255757-86255776 None:intergenic 15.0%
!! ATCAATAATGCAAAATTATA+TGG + chr3_3:86255758-86255777 None:intergenic 15.0%
!! GTTAACTACATGATAAAATT+AGG + chr3_3:86250780-86250799 None:intergenic 20.0%
!! ATTTGATAAATGACTTACAT+TGG + chr3_3:86250876-86250895 None:intergenic 20.0%
!!! TTCTTATGATTTCTGAAAAA+AGG - chr3_3:86250955-86250974 Msa0480730:intron 20.0%
!!! TTATCTTACTCAATTTTTCA+AGG - chr3_3:86251179-86251198 Msa0480730:intron 20.0%
!!! TATCTTACTCAATTTTTCAA+GGG - chr3_3:86251180-86251199 Msa0480730:intron 20.0%
!! TGTGATAAATATAATTGTGT+TGG - chr3_3:86251732-86251751 Msa0480730:intron 20.0%
!! GTGATAAATATAATTGTGTT+GGG - chr3_3:86251733-86251752 Msa0480730:intron 20.0%
!!! AAGTAGTTTGCTTATATAAT+AGG - chr3_3:86251929-86251948 Msa0480730:intron 20.0%
!! ACTCAAAATAAATACTTTCA+GGG + chr3_3:86252093-86252112 None:intergenic 20.0%
!! TACTCAAAATAAATACTTTC+AGG + chr3_3:86252094-86252113 None:intergenic 20.0%
!!! TGAAAGTATTTATTTTGAGT+AGG - chr3_3:86252093-86252112 Msa0480730:intron 20.0%
!! ATATGAAACATACTCAAAAT+TGG - chr3_3:86252846-86252865 Msa0480730:intron 20.0%
!! ATACTCAAAATTGGATAAAT+TGG - chr3_3:86252855-86252874 Msa0480730:intron 20.0%
!! TAAATAAACGATCTTAACAT+AGG + chr3_3:86252928-86252947 None:intergenic 20.0%
!! AAAGGAGAAAATAAATATAC+TGG - chr3_3:86253021-86253040 Msa0480730:intron 20.0%
!!! ACTAACTTATATTTTCTTTC+TGG - chr3_3:86253223-86253242 Msa0480730:intron 20.0%
!!! CTAACTTATATTTTCTTTCT+GGG - chr3_3:86253224-86253243 Msa0480730:intron 20.0%
!!! TAACTTATATTTTCTTTCTG+GGG - chr3_3:86253225-86253244 Msa0480730:intron 20.0%
!!! TTGATTTGTTGTTTTGTTTT+GGG - chr3_3:86254424-86254443 Msa0480730:CDS 20.0%
!! GTAATATGAATATGAAAATC+AGG + chr3_3:86254711-86254730 None:intergenic 20.0%
!!! AAGATTTGTTATTGTCAAAT+CGG - chr3_3:86254768-86254787 Msa0480730:intron 20.0%
!! CATATAAAGAAAACATTTAC+AGG + chr3_3:86254987-86255006 None:intergenic 20.0%
!!! CTGTAAATGTTTTCTTTATA+TGG - chr3_3:86254985-86255004 Msa0480730:intron 20.0%
!!! TGGAAATAGTATTTTCAATA+CGG + chr3_3:86255064-86255083 None:intergenic 20.0%
!! ATTGGATTCTAATATACTTA+TGG - chr3_3:86255901-86255920 Msa0480730:intron 20.0%
!! TTGGATTCTAATATACTTAT+GGG - chr3_3:86255902-86255921 Msa0480730:intron 20.0%
!!! ACAATTAAAAGCATCAATTA+AGG - chr3_3:86255944-86255963 Msa0480730:intron 20.0%
!! CGACAATATAAATATGTTAT+GGG + chr3_3:86256240-86256259 None:intergenic 20.0%
!! CCATAACATATTTATATTGT+CGG - chr3_3:86256238-86256257 Msa0480730:intron 20.0%
!!! TTTTTTTATAGATGGCTTCT+CGG - chr3_3:86250822-86250841 Msa0480730:CDS 25.0%
!! TATGATTTCTGAAAAAAGGT+TGG - chr3_3:86250959-86250978 Msa0480730:intron 25.0%
! CTTAATGAGAAGATGAAAAA+GGG - chr3_3:86251130-86251149 Msa0480730:intron 25.0%
! AGACAAACCTTATTATCAAA+AGG + chr3_3:86251160-86251179 None:intergenic 25.0%
!!! TTTTGGAGAACTTTTGAAAA+CGG - chr3_3:86251253-86251272 Msa0480730:intron 25.0%
!! AATTAGGTTGTTTATCCAAT+CGG - chr3_3:86251468-86251487 Msa0480730:CDS 25.0%
!!! ATAAAAGTAGGTGTTGTTTA+TGG - chr3_3:86251515-86251534 Msa0480730:intron 25.0%
!! TGTTGTTTATGGAACTTATT+TGG - chr3_3:86251526-86251545 Msa0480730:intron 25.0%
! GTTGTTTATGGAACTTATTT+GGG - chr3_3:86251527-86251546 Msa0480730:intron 25.0%
!! TTTTGATACGCAGAAAAAAA+TGG - chr3_3:86251573-86251592 Msa0480730:intron 25.0%
! CTAATCAGTCACAATATTTA+GGG + chr3_3:86251814-86251833 None:intergenic 25.0%
! TTACTAGCAATTGTGAATTT+AGG - chr3_3:86251904-86251923 Msa0480730:intron 25.0%
! TAAGATCTCTTGTATCATTA+AGG + chr3_3:86252273-86252292 None:intergenic 25.0%
! TGATACAAGAGATCTTAATA+AGG - chr3_3:86252276-86252295 Msa0480730:CDS 25.0%
!! TCACAAACATTTTCATGATT+TGG + chr3_3:86252402-86252421 None:intergenic 25.0%
! TTCGTTAAAGAATGAATTGA+AGG - chr3_3:86252445-86252464 Msa0480730:intron 25.0%
! TAAATGATGTCATGTTAGAA+CGG - chr3_3:86252803-86252822 Msa0480730:intron 25.0%
!!! ATTTATTTTCTCCTTTTGAG+AGG + chr3_3:86253017-86253036 None:intergenic 25.0%
!! ATATAAGTTAGTGTCAGTTT+TGG + chr3_3:86253215-86253234 None:intergenic 25.0%
!! AAAGAATTTCAAGTAGTTGA+AGG - chr3_3:86253346-86253365 Msa0480730:CDS 25.0%
! TTGATAAATTATGATGCGAA+AGG + chr3_3:86253872-86253891 None:intergenic 25.0%
! ACACTCAAAAAAAATTCTGT+AGG + chr3_3:86253916-86253935 None:intergenic 25.0%
! ATTGATTGAATGTTTAACGT+TGG - chr3_3:86253993-86254012 Msa0480730:intron 25.0%
!!! TTGTGTACTTAAAGTATTGA+TGG + chr3_3:86254142-86254161 None:intergenic 25.0%
! TTTATATTTCCTATGAACCT+TGG - chr3_3:86254174-86254193 Msa0480730:intron 25.0%
!! GCATGATATTTTGTTCAAAT+AGG - chr3_3:86254196-86254215 Msa0480730:intron 25.0%
!! TGATATTTTGTTCAAATAGG+AGG - chr3_3:86254199-86254218 Msa0480730:intron 25.0%
!!! GTTGATTTGTTGTTTTGTTT+TGG - chr3_3:86254423-86254442 Msa0480730:CDS 25.0%
! TTGGGTATAAATTAATGATC+TGG - chr3_3:86254442-86254461 Msa0480730:intron 25.0%
! ATAAATTAATGATCTGGACA+TGG - chr3_3:86254448-86254467 Msa0480730:intron 25.0%
!!! AATATCTGTTCTAAAGAAAG+TGG + chr3_3:86254580-86254599 None:intergenic 25.0%
! TGACAATAACAAATCTTTGA+TGG + chr3_3:86254765-86254784 None:intergenic 25.0%
! ACTATTAGACATGACAAAAA+TGG - chr3_3:86254845-86254864 Msa0480730:CDS 25.0%
! AACACAATAATACCTGATTT+GGG + chr3_3:86254948-86254967 None:intergenic 25.0%
! AAACACAATAATACCTGATT+TGG + chr3_3:86254949-86254968 None:intergenic 25.0%
!! TCAAAAAGTGATAAGTTGAA+TGG + chr3_3:86255084-86255103 None:intergenic 25.0%
! TGGTTTCATTTATGAAACAT+AGG - chr3_3:86255215-86255234 Msa0480730:intron 25.0%
!! TTTTCATTGTTGTCATATTC+AGG - chr3_3:86255616-86255635 Msa0480730:intron 25.0%
! ATTGTAGATTGTGTTATGAT+TGG + chr3_3:86256138-86256157 None:intergenic 25.0%
! CCGACAATATAAATATGTTA+TGG + chr3_3:86256241-86256260 None:intergenic 25.0%
! ATGTTTCTTGTAGAAATAGA+GGG - chr3_3:86256495-86256514 Msa0480730:five_prime_UTR 25.0%
! TGATTTGTGAAATTGGGATT+TGG + chr3_3:86250651-86250670 None:intergenic 30.0%
ACTACATGATAAAATTAGGG+AGG + chr3_3:86250776-86250795 None:intergenic 30.0%
ATAAATGACTTACATTGGAG+TGG + chr3_3:86250871-86250890 None:intergenic 30.0%
! ATCTTTTGTGAACTCAATTG+CGG + chr3_3:86251095-86251114 None:intergenic 30.0%
GTTCACAAAAGATGATATAG+AGG - chr3_3:86251102-86251121 Msa0480730:intron 30.0%
GCTTAATGAGAAGATGAAAA+AGG - chr3_3:86251129-86251148 Msa0480730:intron 30.0%
AGCTGCAAATTAAGCTAATT+AGG - chr3_3:86251452-86251471 Msa0480730:CDS 30.0%
! ATTAGGTTGTTTATCCAATC+GGG - chr3_3:86251469-86251488 Msa0480730:CDS 30.0%
CCTAATCAGTCACAATATTT+AGG + chr3_3:86251815-86251834 None:intergenic 30.0%
CCTAAATATTGTGACTGATT+AGG - chr3_3:86251812-86251831 Msa0480730:CDS 30.0%
AGATCTTAATAAGGAATTGC+AGG - chr3_3:86252285-86252304 Msa0480730:CDS 30.0%
GAAAATGTTTGTGAACCTAT+TGG - chr3_3:86252408-86252427 Msa0480730:CDS 30.0%
AGCAGCAAAAAATTTCCAAT+AGG + chr3_3:86252426-86252445 None:intergenic 30.0%
CAAAATTCAAGTGCTTGAAA+AGG + chr3_3:86252546-86252565 None:intergenic 30.0%
TTGCGAAGAGGAAATAATTA+AGG - chr3_3:86252586-86252605 Msa0480730:CDS 30.0%
CTTGCAACAAAAATATGGAA+AGG + chr3_3:86252647-86252666 None:intergenic 30.0%
AATCCTGAGATAAGAAGAAA+GGG + chr3_3:86252696-86252715 None:intergenic 30.0%
!!! CATCATTTAGTTTTCCTTGT+AGG + chr3_3:86252792-86252811 None:intergenic 30.0%
AAATGATGTCATGTTAGAAC+GGG - chr3_3:86252804-86252823 Msa0480730:intron 30.0%
TAAATTGGCAAGTAAAACAG+AGG - chr3_3:86252870-86252889 Msa0480730:intron 30.0%
AAGTTAGAGGTAATGCAATT+GGG - chr3_3:86253070-86253089 Msa0480730:intron 30.0%
TCGTAAACTACAAGATCAAT+TGG - chr3_3:86253318-86253337 Msa0480730:CDS 30.0%
!!! TTTTATTTCTAGGAGCTGAA+AGG - chr3_3:86253483-86253502 Msa0480730:intron 30.0%
TGAAACTCGTAAGAAACAAT+AGG + chr3_3:86253664-86253683 None:intergenic 30.0%
TTTGTCCTGTAAAAATTAGC+AGG - chr3_3:86253720-86253739 Msa0480730:intron 30.0%
! ACAGCTTTTTACATTTGACA+AGG - chr3_3:86253749-86253768 Msa0480730:intron 30.0%
ATAAATTATGATGCGAAAGG+AGG + chr3_3:86253869-86253888 None:intergenic 30.0%
! AAAACGTAGGAGGTTTTTAA+AGG + chr3_3:86254107-86254126 None:intergenic 30.0%
!! TGTACTTAAAGTATTGATGG+TGG + chr3_3:86254139-86254158 None:intergenic 30.0%
TTGAACAAAATATCATGCCA+AGG + chr3_3:86254194-86254213 None:intergenic 30.0%
ATTGTACCCTTATATTGACA+TGG - chr3_3:86254352-86254371 Msa0480730:CDS 30.0%
AGTAAGCCATGTCAATATAA+GGG + chr3_3:86254361-86254380 None:intergenic 30.0%
TAGTAAGCCATGTCAATATA+AGG + chr3_3:86254362-86254381 None:intergenic 30.0%
! TAGGTATGCATTTTTGCTTA+TGG - chr3_3:86254484-86254503 Msa0480730:intron 30.0%
! ATTTTTGCTTATGGACAAAC+AGG - chr3_3:86254493-86254512 Msa0480730:intron 30.0%
TTGACATGTTGTCACATAAA+TGG - chr3_3:86254677-86254696 Msa0480730:intron 30.0%
ATATTACTAGGCATCAGTAT+TGG - chr3_3:86254724-86254743 Msa0480730:intron 30.0%
! AAATGGAAACACACATGTTT+TGG - chr3_3:86254862-86254881 Msa0480730:CDS 30.0%
TATTGTGTTTGCTCCATATT+AGG - chr3_3:86254959-86254978 Msa0480730:CDS 30.0%
ACATTTACAGGATCCTAATA+TGG + chr3_3:86254975-86254994 None:intergenic 30.0%
TGGTGTAAGAATAAACATTG+TGG - chr3_3:86255005-86255024 Msa0480730:intron 30.0%
GGTGTAAGAATAAACATTGT+GGG - chr3_3:86255006-86255025 Msa0480730:intron 30.0%
TGTAACAAAACTTATCGTGA+AGG + chr3_3:86255363-86255382 None:intergenic 30.0%
TGTCTTAAACCTGATTGATT+TGG - chr3_3:86255455-86255474 Msa0480730:CDS 30.0%
AAATATGACATTGCTCAAAC+AGG + chr3_3:86255660-86255679 None:intergenic 30.0%
! GGTTTTTATATACCTGAAGT+AGG + chr3_3:86255736-86255755 None:intergenic 30.0%
GCAGTATCATTTCTTAAGAT+TGG - chr3_3:86255883-86255902 Msa0480730:intron 30.0%
ATCATCTCATGTTAGAACTT+AGG - chr3_3:86256105-86256124 Msa0480730:CDS 30.0%
! GTTGACAAACATCAAAGTTT+TGG + chr3_3:86256290-86256309 None:intergenic 30.0%
CATGTTTCTTGTAGAAATAG+AGG - chr3_3:86256494-86256513 Msa0480730:five_prime_UTR 30.0%
TTTGTGAAATTGGGATTTGG+TGG + chr3_3:86250648-86250667 None:intergenic 35.0%
AGGGAGGAATGAAATTGAAA+TGG + chr3_3:86250760-86250779 None:intergenic 35.0%
TTGTTCACCATTGCAGTTAA+CGG + chr3_3:86251037-86251056 None:intergenic 35.0%
!! GGGAACTCCTTTTGATAATA+AGG - chr3_3:86251150-86251169 Msa0480730:intron 35.0%
CTCGAATAAGTCAATCCAAA+CGG + chr3_3:86251207-86251226 None:intergenic 35.0%
!! GAACTTTTGAAAACGGCTTA+TGG - chr3_3:86251260-86251279 Msa0480730:intron 35.0%
ATTTCCAGCAAAAAGCTATG+CGG + chr3_3:86251327-86251346 None:intergenic 35.0%
! TTAGGTTGTTTATCCAATCG+GGG - chr3_3:86251470-86251489 Msa0480730:CDS 35.0%
ATGGAACTTATTTGGGTGTT+TGG - chr3_3:86251534-86251553 Msa0480730:intron 35.0%
TTCTGCGTATCAAAAACATG+AGG + chr3_3:86251568-86251587 None:intergenic 35.0%
!! AGATGGTGGATCTTATTAAG+CGG - chr3_3:86251599-86251618 Msa0480730:intron 35.0%
! ATGAAGCGTTTCAATCTTGT+TGG + chr3_3:86251650-86251669 None:intergenic 35.0%
!! GTTAAGAAGTGTTCTGATAC+TGG - chr3_3:86251688-86251707 Msa0480730:CDS 35.0%
CCAAAAGACCAAAACTAATG+CGG - chr3_3:86251766-86251785 Msa0480730:intron 35.0%
CTAGTGACTGTGCAATAATT+TGG - chr3_3:86251972-86251991 Msa0480730:intron 35.0%
TGAGATGAAAAATAAGACCG+AGG - chr3_3:86252171-86252190 Msa0480730:intron 35.0%
AATTCAAGTGCTTGAAAAGG+AGG + chr3_3:86252543-86252562 None:intergenic 35.0%
TAAGTAACATTGTTGCGAAG+AGG - chr3_3:86252574-86252593 Msa0480730:CDS 35.0%
AGAGGCTTGCAACAAAAATA+TGG + chr3_3:86252652-86252671 None:intergenic 35.0%
AACGCAACACAAAAAATGAG+AGG + chr3_3:86252670-86252689 None:intergenic 35.0%
GAATCCTGAGATAAGAAGAA+AGG + chr3_3:86252697-86252716 None:intergenic 35.0%
CAATAGTGTGTTTCCTTTAC+AGG - chr3_3:86252982-86253001 Msa0480730:intron 35.0%
AGCAAAAGTTACATGCTGAA+AGG - chr3_3:86253044-86253063 Msa0480730:intron 35.0%
GCAAAAGTTACATGCTGAAA+GGG - chr3_3:86253045-86253064 Msa0480730:intron 35.0%
GAAGTTAGAGGTAATGCAAT+TGG - chr3_3:86253069-86253088 Msa0480730:intron 35.0%
TAGTTGAAGGAGAAAAGCTA+AGG - chr3_3:86253359-86253378 Msa0480730:CDS 35.0%
!! AACACTGTCTTGGTAATGTT+TGG - chr3_3:86253394-86253413 Msa0480730:CDS 35.0%
CAAGCATTTCTATTGACGTA+GGG + chr3_3:86253581-86253600 None:intergenic 35.0%
! TCTGTCCTGCTAATTTTTAC+AGG + chr3_3:86253728-86253747 None:intergenic 35.0%
TTTCACCGAAATATCACAAC+TGG - chr3_3:86253803-86253822 Msa0480730:CDS 35.0%
AATTACCTTGTAGCCATCAA+GGG + chr3_3:86253838-86253857 None:intergenic 35.0%
!!! GAGCTTTTTTAAAACGTAGG+AGG + chr3_3:86254117-86254136 None:intergenic 35.0%
!!! GTGGAGCTTTTTTAAAACGT+AGG + chr3_3:86254120-86254139 None:intergenic 35.0%
AATATCATGCCAAGGTTCAT+AGG + chr3_3:86254186-86254205 None:intergenic 35.0%
TAATACCTCCAACTTTCTTG+TGG - chr3_3:86254233-86254252 Msa0480730:intron 35.0%
GATATCAACCACAAGAAAGT+TGG + chr3_3:86254244-86254263 None:intergenic 35.0%
! CTTTCTTGTGGTTGATATCT+TGG - chr3_3:86254245-86254264 Msa0480730:intron 35.0%
CAAAGAATACGTGAAGGAAA+AGG + chr3_3:86254393-86254412 None:intergenic 35.0%
! CTTTTCCTTCACGTATTCTT+TGG - chr3_3:86254391-86254410 Msa0480730:CDS 35.0%
ACATGGCTGTTTATTATGCT+AGG - chr3_3:86254465-86254484 Msa0480730:intron 35.0%
AGGAAAAACCCATACAATGA+TGG - chr3_3:86254519-86254538 Msa0480730:intron 35.0%
GGAAAAACCCATACAATGAT+GGG - chr3_3:86254520-86254539 Msa0480730:intron 35.0%
TGGAATTACAAAATGCAGGT+TGG - chr3_3:86254631-86254650 Msa0480730:intron 35.0%
TTATTGTCAAATCGGTCAAG+TGG - chr3_3:86254776-86254795 Msa0480730:intron 35.0%
TATTGTCAAATCGGTCAAGT+GGG - chr3_3:86254777-86254796 Msa0480730:intron 35.0%
! CAATATGCTCTTGTTGTACT+TGG - chr3_3:86255164-86255183 Msa0480730:intron 35.0%
ACTAGAGTCTACATATAGCT+TGG - chr3_3:86255192-86255211 Msa0480730:intron 35.0%
AACACTGAACAACAAGTACA+AGG - chr3_3:86255432-86255451 Msa0480730:intron 35.0%
!! TTAAACCTGATTGATTTGGC+TGG - chr3_3:86255459-86255478 Msa0480730:CDS 35.0%
TATTTATGATCTTGAGCTCC+TGG - chr3_3:86255561-86255580 Msa0480730:intron 35.0%
AGAAAGTTGAATCATTCACC+AGG + chr3_3:86255582-86255601 None:intergenic 35.0%
GAGCAATGTCATATTTGCTT+TGG - chr3_3:86255664-86255683 Msa0480730:intron 35.0%
!!! GTAAGTTTTGAATCCCTGAA+AGG + chr3_3:86255710-86255729 None:intergenic 35.0%
AAAACTTACACACCTACTTC+AGG - chr3_3:86255721-86255740 Msa0480730:intron 35.0%
!! CTTGTTTCAACGGATTAAAG+CGG + chr3_3:86256051-86256070 None:intergenic 35.0%
! GAGTGACTTTCTTGTTTCAA+CGG + chr3_3:86256061-86256080 None:intergenic 35.0%
TCAAGTCCATATTCTCTGAA+GGG + chr3_3:86256083-86256102 None:intergenic 35.0%
ATCAAGTCCATATTCTCTGA+AGG + chr3_3:86256084-86256103 None:intergenic 35.0%
! TAAATATGTTATGGGAGCAC+TGG + chr3_3:86256232-86256251 None:intergenic 35.0%
TCGTCAATTGAAGATTGATC+AGG + chr3_3:86256319-86256338 None:intergenic 35.0%
TAGAGTCAATGCTGTGAAAT+TGG - chr3_3:86256366-86256385 Msa0480730:intron 35.0%
AGAGTCAATGCTGTGAAATT+GGG - chr3_3:86256367-86256386 Msa0480730:intron 35.0%
TAAACATTGAGTGGATGTCT+AGG + chr3_3:86256409-86256428 None:intergenic 35.0%
CCAAGATTCTAAACATTGAG+TGG + chr3_3:86256418-86256437 None:intergenic 35.0%
! CCACTCAATGTTTAGAATCT+TGG - chr3_3:86256415-86256434 Msa0480730:intron 35.0%
! GGGGTGTGATTTGTGAAATT+GGG + chr3_3:86250657-86250676 None:intergenic 40.0%
! AGGGGTGTGATTTGTGAAAT+TGG + chr3_3:86250658-86250677 None:intergenic 40.0%
AGGTGGAGTTAGAAGAGAAA+GGG + chr3_3:86250677-86250696 None:intergenic 40.0%
ACAAGATTCGTACCAGTTGA+CGG + chr3_3:86250737-86250756 None:intergenic 40.0%
!! CTTACATTGGAGTGGTTTTG+AGG + chr3_3:86250863-86250882 None:intergenic 40.0%
AAAGGTTGGATCTGAAGAGA+TGG - chr3_3:86250973-86250992 Msa0480730:intron 40.0%
GCTACTGCAAGTAATGTAGA+GGG - chr3_3:86251058-86251077 Msa0480730:intron 40.0%
!!! CAATTTTTCAAGGGTCCGTT+TGG - chr3_3:86251189-86251208 Msa0480730:intron 40.0%
! AAGCACTTGTGAGACTGTTT+TGG - chr3_3:86251236-86251255 Msa0480730:intron 40.0%
TTTCCAGCAAAAAGCTATGC+GGG + chr3_3:86251326-86251345 None:intergenic 40.0%
AGATAGATTAAAGCCCCGAT+TGG + chr3_3:86251486-86251505 None:intergenic 40.0%
GCAGAAAAAAATGGAGCAGA+TGG - chr3_3:86251582-86251601 Msa0480730:intron 40.0%
GAAAAAAATGGAGCAGATGG+TGG - chr3_3:86251585-86251604 Msa0480730:intron 40.0%
! GGCTTAAGCTTTGTGTTCAA+TGG - chr3_3:86251620-86251639 Msa0480730:intron 40.0%
!!! CCGCATTAGTTTTGGTCTTT+TGG + chr3_3:86251769-86251788 None:intergenic 40.0%
!! AAGTCTCTCCGCATTAGTTT+TGG + chr3_3:86251777-86251796 None:intergenic 40.0%
AGATCTCAATTCAGCTAACG+AGG - chr3_3:86252204-86252223 Msa0480730:intron 40.0%
ATGAATTGAAGGAGAGTAGC+TGG - chr3_3:86252456-86252475 Msa0480730:intron 40.0%
TGAATTGAAGGAGAGTAGCT+GGG - chr3_3:86252457-86252476 Msa0480730:intron 40.0%
! AAAGGAGGAGGCTAATGTTT+TGG + chr3_3:86252528-86252547 None:intergenic 40.0%
GATCCCTTTCTTCTTATCTC+AGG - chr3_3:86252690-86252709 Msa0480730:intron 40.0%
!! AAGTAAAACAGAGGCACTTG+AGG - chr3_3:86252879-86252898 Msa0480730:intron 40.0%
!!! TATTTTCTTTCTGGGGCTTC+TGG - chr3_3:86253232-86253251 Msa0480730:intron 40.0%
! GATGGCTGATTTATCTGCTA+TGG - chr3_3:86253258-86253277 Msa0480730:intron 40.0%
AAAACTGCACAACACTGTCT+TGG - chr3_3:86253384-86253403 Msa0480730:CDS 40.0%
CCAAGCATTTCTATTGACGT+AGG + chr3_3:86253582-86253601 None:intergenic 40.0%
CCTACGTCAATAGAAATGCT+TGG - chr3_3:86253579-86253598 Msa0480730:CDS 40.0%
!! GGCATTGAGTTGGAACAAAA+TGG - chr3_3:86253606-86253625 Msa0480730:CDS 40.0%
AAACAATAGGAGTGGAGTAG+CGG + chr3_3:86253651-86253670 None:intergenic 40.0%
CTCGTAAGAAACAATAGGAG+TGG + chr3_3:86253659-86253678 None:intergenic 40.0%
CTGCACCAGTTGTGATATTT+CGG + chr3_3:86253811-86253830 None:intergenic 40.0%
GAATTACCTTGTAGCCATCA+AGG + chr3_3:86253839-86253858 None:intergenic 40.0%
ATCAACCACAAGAAAGTTGG+AGG + chr3_3:86254241-86254260 None:intergenic 40.0%
TGATATCTTGGATGTGTCTG+TGG - chr3_3:86254257-86254276 Msa0480730:intron 40.0%
AGAAGCCAAAGAATACGTGA+AGG + chr3_3:86254399-86254418 None:intergenic 40.0%
!! AAACCCATACAATGATGGGT+AGG - chr3_3:86254524-86254543 Msa0480730:intron 40.0%
AGTCAGTCTCTTAAAGACCA+GGG - chr3_3:86254607-86254626 Msa0480730:intron 40.0%
! CACTATTTTCTGCTCGTGTT+TGG + chr3_3:86254808-86254827 None:intergenic 40.0%
CGAGCAGAAAATAGTGTTCA+TGG - chr3_3:86254812-86254831 Msa0480730:intron 40.0%
TACAAACATCGACAATGGTG+AGG + chr3_3:86254889-86254908 None:intergenic 40.0%
AGAGTCTACATATAGCTTGG+TGG - chr3_3:86255195-86255214 Msa0480730:intron 40.0%
ATTGACCTGAAGACACAAGA+GGG + chr3_3:86255257-86255276 None:intergenic 40.0%
TCTTGTGTCTTCAGGTCAAT+GGG - chr3_3:86255257-86255276 Msa0480730:intron 40.0%
CTGGAAGTGAAAGACTTTCA+AGG - chr3_3:86255478-86255497 Msa0480730:CDS 40.0%
AGTGAAAGACTTTCAAGGAG+TGG - chr3_3:86255483-86255502 Msa0480730:CDS 40.0%
GTGAAAGACTTTCAAGGAGT+GGG - chr3_3:86255484-86255503 Msa0480730:CDS 40.0%
TGAAAGACTTTCAAGGAGTG+GGG - chr3_3:86255485-86255504 Msa0480730:CDS 40.0%
! AAGAAGAGCATGTTCCTTTC+AGG - chr3_3:86255693-86255712 Msa0480730:intron 40.0%
! AGAAGAGCATGTTCCTTTCA+GGG - chr3_3:86255694-86255713 Msa0480730:intron 40.0%
GAGTCAATGCTGTGAAATTG+GGG - chr3_3:86256368-86256387 Msa0480730:intron 40.0%
!! GAAATTGGGATTTGGTGGCT+CGG + chr3_3:86250643-86250662 None:intergenic 45.0%
GGTGGAGTTAGAAGAGAAAG+GGG + chr3_3:86250676-86250695 None:intergenic 45.0%
GAGGTGGAGTTAGAAGAGAA+AGG + chr3_3:86250678-86250697 None:intergenic 45.0%
!!! ACATTGGAGTGGTTTTGAGG+AGG + chr3_3:86250860-86250879 None:intergenic 45.0%
!! ATGGAGAGACAAAGAGTGTC+TGG - chr3_3:86250992-86251011 Msa0480730:intron 45.0%
CGCTACTGCAAGTAATGTAG+AGG - chr3_3:86251057-86251076 Msa0480730:intron 45.0%
! CTAATGCGGAGAGACTTGTT+TGG - chr3_3:86251780-86251799 Msa0480730:intron 45.0%
! TTTGTGTGCGCTTTTCTGTG+TGG - chr3_3:86251844-86251863 Msa0480730:CDS 45.0%
GAGATCTGATTGAAGCTCCT+CGG + chr3_3:86252191-86252210 None:intergenic 45.0%
GTTGCTAGGCAAGATAGCAA+TGG + chr3_3:86252492-86252511 None:intergenic 45.0%
TCAAGTGCTTGAAAAGGAGG+AGG + chr3_3:86252540-86252559 None:intergenic 45.0%
GAGGAACAAGTCTCCTGTAA+AGG + chr3_3:86252998-86253017 None:intergenic 45.0%
! GGAGACTTGTTCCTCTCAAA+AGG - chr3_3:86253003-86253022 Msa0480730:intron 45.0%
TGCTGAAAGGGAGAAGTTAG+AGG - chr3_3:86253057-86253076 Msa0480730:intron 45.0%
TCTGAACGGTCTCGTAGTAA+AGG + chr3_3:86253537-86253556 None:intergenic 45.0%
AGACCGTTCAGAAACGAAGA+CGG - chr3_3:86253545-86253564 Msa0480730:CDS 45.0%
CAACCGTCTTCGTTTCTGAA+CGG + chr3_3:86253551-86253570 None:intergenic 45.0%
CGTCAATAGAAATGCTTGGC+CGG - chr3_3:86253583-86253602 Msa0480730:CDS 45.0%
GTCAATAGAAATGCTTGGCC+GGG - chr3_3:86253584-86253603 Msa0480730:CDS 45.0%
TCAATAGAAATGCTTGGCCG+GGG - chr3_3:86253585-86253604 Msa0480730:CDS 45.0%
TTTGTTCCAACTCAATGCCC+CGG + chr3_3:86253605-86253624 None:intergenic 45.0%
CAATCCACTTCACTTCCATG+TGG + chr3_3:86254336-86254355 None:intergenic 45.0%
GCTTATGGACAAACAGGTTC+AGG - chr3_3:86254499-86254518 Msa0480730:intron 45.0%
AGGCCTACCCATCATTGTAT+GGG + chr3_3:86254530-86254549 None:intergenic 45.0%
CTGACTCTCCAGATCTCAAA+GGG - chr3_3:86254548-86254567 Msa0480730:intron 45.0%
!! GGTATCATCCCTTTGAGATC+TGG + chr3_3:86254559-86254578 None:intergenic 45.0%
! CTTTAAGAGACTGACTGGTC+TGG + chr3_3:86254603-86254622 None:intergenic 45.0%
! CTGGTCTTTAAGAGACTGAC+TGG + chr3_3:86254608-86254627 None:intergenic 45.0%
CAGTCAGTCTCTTAAAGACC+AGG - chr3_3:86254606-86254625 Msa0480730:intron 45.0%
! GCATTTTGTAATTCCAGCCC+TGG + chr3_3:86254627-86254646 None:intergenic 45.0%
GGGCTGGAATTACAAAATGC+AGG - chr3_3:86254627-86254646 Msa0480730:intron 45.0%
GGCACTACAAACATCGACAA+TGG + chr3_3:86254894-86254913 None:intergenic 45.0%
CATTACCCTCTTGTGTCTTC+AGG - chr3_3:86255249-86255268 Msa0480730:intron 45.0%
CATTGACCTGAAGACACAAG+AGG + chr3_3:86255258-86255277 None:intergenic 45.0%
CTCTTGTGTCTTCAGGTCAA+TGG - chr3_3:86255256-86255275 Msa0480730:intron 45.0%
TGCGCAAAGTAACGACAAAG+TGG + chr3_3:86255316-86255335 None:intergenic 45.0%
! GTCGTTACTTTGCGCATATG+TGG - chr3_3:86255320-86255339 Msa0480730:intron 45.0%
GCGCATATGTGGTATAAACG+AGG - chr3_3:86255331-86255350 Msa0480730:intron 45.0%
CACTTCCAGCCAAATCAATC+AGG + chr3_3:86255467-86255486 None:intergenic 45.0%
GGAACGTTTGAAGGAAACTC+AGG - chr3_3:86255515-86255534 Msa0480730:CDS 45.0%
TGCTCAAACAGGAGAGACTT+TGG + chr3_3:86255649-86255668 None:intergenic 45.0%
GTCACTCCCTTCAGAGAATA+TGG - chr3_3:86256074-86256093 Msa0480730:CDS 45.0%
GATTGCAGCCATGTCTTGAA+GGG - chr3_3:86256260-86256279 Msa0480730:intron 45.0%
ATTGCAGCCATGTCTTGAAG+GGG - chr3_3:86256261-86256280 Msa0480730:intron 45.0%
TTGGAATCCCCTTCAAGACA+TGG + chr3_3:86256271-86256290 None:intergenic 45.0%
TACCAGTTGACGGAGTCAGA+AGG + chr3_3:86250727-86250746 None:intergenic 50.0%
TGGCTTCTCGGAATCAGAAC+CGG - chr3_3:86250834-86250853 Msa0480730:CDS 50.0%
!! TAGAGCGCCGTTAACTGCAA+TGG - chr3_3:86251027-86251046 Msa0480730:intron 50.0%
! TCTCCCGCATAGCTTTTTGC+TGG - chr3_3:86251320-86251339 Msa0480730:intron 50.0%
TGCCTAGCAACTCTCTTCAC+TGG - chr3_3:86252501-86252520 Msa0480730:intron 50.0%
GCCTAGCAACTCTCTTCACT+GGG - chr3_3:86252502-86252521 Msa0480730:intron 50.0%
GATGATCGTGATCGCCTACA+AGG - chr3_3:86252775-86252794 Msa0480730:intron 50.0%
GGTGAAAACGTCATGCTGAG+AGG + chr3_3:86253790-86253809 None:intergenic 50.0%
!!! TTTTTTGTGTCTGCGCCCTG+TGG - chr3_3:86254069-86254088 Msa0480730:intron 50.0%
ATCTGTCATGAGACGCCACA+TGG - chr3_3:86254318-86254337 Msa0480730:CDS 50.0%
CAGGCCTACCCATCATTGTA+TGG + chr3_3:86254531-86254550 None:intergenic 50.0%
!! CCTTTGAGATCTGGAGAGTC+AGG + chr3_3:86254550-86254569 None:intergenic 50.0%
CCTGACTCTCCAGATCTCAA+AGG - chr3_3:86254547-86254566 Msa0480730:intron 50.0%
AGTCTCTTAAAGACCAGGGC+TGG - chr3_3:86254611-86254630 Msa0480730:intron 50.0%
GAGGAGGGAGGAAATCTCAT+CGG + chr3_3:86254915-86254934 None:intergenic 50.0%
GATTTCCTCCCTCCTCCAAA+AGG - chr3_3:86254919-86254938 Msa0480730:CDS 50.0%
!! TGATTTGGGCAGCCTTTTGG+AGG + chr3_3:86254934-86254953 None:intergenic 50.0%
TCCAAAAGGCTGCCCAAATC+AGG - chr3_3:86254933-86254952 Msa0480730:CDS 50.0%
!!! ACCTGATTTGGGCAGCCTTT+TGG + chr3_3:86254937-86254956 None:intergenic 50.0%
TTCCTTCAAACGTTCCCCAG+TGG + chr3_3:86255511-86255530 None:intergenic 50.0%
GGATTGCAGCCATGTCTTGA+AGG - chr3_3:86256259-86256278 Msa0480730:intron 50.0%
TGGCGAGAAGGTAGGGTTTG+CGG + chr3_3:86250700-86250719 None:intergenic 55.0%
AGGACGATGGCGAGAAGGTA+GGG + chr3_3:86250707-86250726 None:intergenic 55.0%
AAGGACGATGGCGAGAAGGT+AGG + chr3_3:86250708-86250727 None:intergenic 55.0%
TCAGAAGGACGATGGCGAGA+AGG + chr3_3:86250712-86250731 None:intergenic 55.0%
TGACGGAGTCAGAAGGACGA+TGG + chr3_3:86250720-86250739 None:intergenic 55.0%
GTCCTTCTGACTCCGTCAAC+TGG - chr3_3:86250722-86250741 Msa0480730:exon 55.0%
!!! TGGAGTGGTTTTGAGGAGGC+CGG + chr3_3:86250856-86250875 None:intergenic 55.0%
GCCCAGTGAAGAGAGTTGCT+AGG + chr3_3:86252506-86252525 None:intergenic 55.0%
!! TTCTGGGGCTTCTGGCTAGA+TGG - chr3_3:86253240-86253259 Msa0480730:intron 55.0%
! GAGTGCCCTTGATGGCTACA+AGG - chr3_3:86253830-86253849 Msa0480730:CDS 55.0%
! AGGCAGAAGTGCAGACCACA+GGG + chr3_3:86254087-86254106 None:intergenic 55.0%
! AAGGCAGAAGTGCAGACCAC+AGG + chr3_3:86254088-86254107 None:intergenic 55.0%
GACGCCACATGGAAGTGAAG+TGG - chr3_3:86254329-86254348 Msa0480730:CDS 55.0%
!! TTGGGCAGCCTTTTGGAGGA+GGG + chr3_3:86254930-86254949 None:intergenic 55.0%
!! TTTGGGCAGCCTTTTGGAGG+AGG + chr3_3:86254931-86254950 None:intergenic 55.0%
TTTCAAGGAGTGGGGCCACT+GGG - chr3_3:86255493-86255512 Msa0480730:CDS 55.0%
!! GGGATTTGGTGGCTCGGTGA+AGG + chr3_3:86250637-86250656 None:intergenic 60.0%
GAAGGTAGGGTTTGCGGAGG+TGG + chr3_3:86250694-86250713 None:intergenic 60.0%
CGAGAAGGTAGGGTTTGCGG+AGG + chr3_3:86250697-86250716 None:intergenic 60.0%
! CTGGTGCAGAGTGCCCTTGA+TGG - chr3_3:86253822-86253841 Msa0480730:CDS 60.0%
CTTTCAAGGAGTGGGGCCAC+TGG - chr3_3:86255492-86255511 Msa0480730:CDS 60.0%
TTCAAGGAGTGGGGCCACTG+GGG - chr3_3:86255494-86255513 Msa0480730:CDS 60.0%
GGCCACTGGGGAACGTTTGA+AGG - chr3_3:86255506-86255525 Msa0480730:CDS 60.0%
!! GCTTGGCCGGGGCATTGAGT+TGG - chr3_3:86253596-86253615 Msa0480730:CDS 65.0%
!! GGCAGCCTTTTGGAGGAGGG+AGG + chr3_3:86254927-86254946 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 86250614 86256549 86250614 ID=Msa0480730;Name=Msa0480730
chr3_3 mRNA 86250614 86256549 86250614 ID=Msa0480730-mRNA-1;Parent=Msa0480730;Name=Msa0480730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=130|0.93|0.93|1|0.93|0.93|16|120|671
chr3_3 exon 86250614 86250895 86250614 ID=Msa0480730-mRNA-1:exon:24874;Parent=Msa0480730-mRNA-1
chr3_3 exon 86251421 86251525 86251421 ID=Msa0480730-mRNA-1:exon:24873;Parent=Msa0480730-mRNA-1
chr3_3 exon 86251627 86251731 86251627 ID=Msa0480730-mRNA-1:exon:24872;Parent=Msa0480730-mRNA-1
chr3_3 exon 86251811 86251892 86251811 ID=Msa0480730-mRNA-1:exon:24871;Parent=Msa0480730-mRNA-1
chr3_3 exon 86252209 86252429 86252209 ID=Msa0480730-mRNA-1:exon:24870;Parent=Msa0480730-mRNA-1
chr3_3 exon 86252515 86252676 86252515 ID=Msa0480730-mRNA-1:exon:24869;Parent=Msa0480730-mRNA-1
chr3_3 exon 86253312 86253421 86253312 ID=Msa0480730-mRNA-1:exon:24868;Parent=Msa0480730-mRNA-1
chr3_3 exon 86253536 86253668 86253536 ID=Msa0480730-mRNA-1:exon:24867;Parent=Msa0480730-mRNA-1
chr3_3 exon 86253758 86253904 86253758 ID=Msa0480730-mRNA-1:exon:24866;Parent=Msa0480730-mRNA-1
chr3_3 exon 86254085 86254159 86254085 ID=Msa0480730-mRNA-1:exon:24865;Parent=Msa0480730-mRNA-1
chr3_3 exon 86254263 86254451 86254263 ID=Msa0480730-mRNA-1:exon:24864;Parent=Msa0480730-mRNA-1
chr3_3 exon 86254836 86254996 86254836 ID=Msa0480730-mRNA-1:exon:24863;Parent=Msa0480730-mRNA-1
chr3_3 exon 86255454 86255577 86255454 ID=Msa0480730-mRNA-1:exon:24862;Parent=Msa0480730-mRNA-1
chr3_3 exon 86255992 86256186 86255992 ID=Msa0480730-mRNA-1:exon:24861;Parent=Msa0480730-mRNA-1
chr3_3 exon 86256286 86256330 86256286 ID=Msa0480730-mRNA-1:exon:24860;Parent=Msa0480730-mRNA-1
chr3_3 exon 86256420 86256549 86256420 ID=Msa0480730-mRNA-1:exon:24859;Parent=Msa0480730-mRNA-1
chr3_3 five_prime_UTR 86256420 86256549 86256420 ID=Msa0480730-mRNA-1:five_prime_utr;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86256286 86256330 86256286 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86255992 86256186 86255992 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86255454 86255577 86255454 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86254836 86254996 86254836 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86254263 86254451 86254263 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86254085 86254159 86254085 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86253758 86253904 86253758 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86253536 86253668 86253536 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86253312 86253421 86253312 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86252515 86252676 86252515 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86252209 86252429 86252209 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86251811 86251892 86251811 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86251627 86251731 86251627 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86251421 86251525 86251421 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 CDS 86250734 86250895 86250734 ID=Msa0480730-mRNA-1:cds;Parent=Msa0480730-mRNA-1
chr3_3 three_prime_UTR 86250614 86250733 86250614 ID=Msa0480730-mRNA-1:three_prime_utr;Parent=Msa0480730-mRNA-1
Gene Sequence

>Msa0480730

ATGGCTTCTCGGAATCAGAACCGGCCTCCTCAAAACCACTCCAATGTTGGATCTGAAGAGATGGAGAGACAAAGAGTGTCTGGTAGAGCTAAAGCTAGAGCGCCGTTAACTGCAATGGTGAACAACGCTACTGCAAGTAATGTAGAGGGAATCGATTCAACCGCAATTGAGTTCACAAAAGATGATATAGAGGCATTGCTTAATGAGAAGATGAAAAAGGGAACTCCTTTTGATAATAAGAAAAAAATGGAGCAGATGGTGGATCTTATTAAGCGGCTTAAGCTTTGTGTTCAATGGTGCGCCAACAAGATTGAAACGCTTCATTCTGAAGTTGAGTCTGCTGTTAAGAAGTGTTCTGATACTGAGATTGAGATGAAAAATAAGACCGAGGAGCTTCAATCAGATCTCAATTCAGCTAACGAGGCTTATAGAAGACTTGAAACAGAGAAATCAATCATTGCTGAGAGCCTTAATGATACAAGAGATCTTAATAAGGAATTGCAGGATCGATTGAAATCTCTTAAAGATTCACAGAGTGAAGCTATAAAGCATAAAGAAATGTTCCGAGAAGAACTAAAAAAAATTACAGATGATCGTGATCGCCTACAAGGAAAACTAAATGATGTCATGTTAGAACGGGAAAAATACATAAAATTTAAATATGAAACATACTCAAAATTGGATAAATTGGCAAGTAAAACAGAGGCACTTGAGGAGACTTGTTCCTCTCAAAAGGAGAAAATAAATATACTGGAGCAAAAGTTACATGCTGAAAGGGAGAAGTTAGAGATGGCTGATTTATCTGCTATGGAAACAAGAGCAACGTTTGAAGAGCAGAAAAGATTCATTCGTAAACTACAAGATCAATTGGCAGATAAAGAATTTCAAGTAGTTGAAGGAGAAAAGCTAAGGAAAAAACTGCACAACACTGTCTTGGAGCTGAAAGGAAATATTCGTGTGTTTTGTCGTGTACGACCTTTACTACGAGACCGTTCAGAAACGAAGACGGTTGTTTATTACCCTACGTCAATAGAAATGCTTGGCCGGGGCATTGAGTTGGAACAAAATGGACAGAAACAGCTTTTTACATTTGACAAGGTGTTTAATCATGACGCCTCTCAGCATGACGTTTTCACCGAAATATCACAACTGGTGCAGAGTGCCCTTGATGGCTACAAGGTATGCATTTTTGCTTATGGACAAACAGGTTCAGGAAAAACCCATACAATGATGGGTAGGCCTGACTCTCCAGATCTCAAAGGGATGATACCACTTTCTTTAGAACAGATATTCCAGACCAGTCAGTCTCTTAAAGACCAGGGCTGGAATTACAAAATGCAGGCATCAGTATTGGAAATATATAATGAGACCATCAAAGATTTGTTATTGTCAAATCGGTCAAGTGGGATTGACCAAACACGAGCAGAAAATAGTGTTCATGGAAAACAGTACACTATTAGACATGACAAAAATGGAAACACACATGTTTTGGACCTCACCATTGTCGATGTTTGTAGTGCCGATGAGATTTCCTCCCTCCTCCAAAAGGCTGCCCAAATCAGGTCAATGGGAAGAACACAAATGAATGAACAATCATCAAGAAGCCACTTTGTCGTTACTTTGCGCATATGTGGTATAAACGAGAACACTGAACAACAAGTACAAGGTGTCTTAAACCTGATTGATTTGGCTGGAAGTGAAAGACTTTCAAGGAGTGGGGCCACTGGGGAACGTTTGAAGGAAACTCAGGCTATCAACCAAAGTCTCTCCTGTTTGAGCAATGTCATATTTGCTTTGGCAAAGAAAGAAGAGCATGTTCCTTTCAGGGATTCAAAACTTACACACCTACTTCAGCCATGTCTTGAAGGGGATTCCAAAACTTTGATGTTTGTCAACATCTCACCTGATCAATCTTCAATTGACGAGTCACTTTGCTCTCTTCGATTTGCGTCTAGAGTCAATGCTGTGAAATTGGGGATTCACAATGTCAGACCTAGACATCCACTCAATGTTTAG
Protein sequence

>Msa0480730

MASRNQNRPPQNHSNVGSEEMERQRVSGRAKARAPLTAMVNNATASNVEGIDSTAIEFTKDDIEALLNEKMKKGTPFDNKKKMEQMVDLIKRLKLCVQWCANKIETLHSEVESAVKKCSDTEIEMKNKTEELQSDLNSANEAYRRLETEKSIIAESLNDTRDLNKELQDRLKSLKDSQSEAIKHKEMFREELKKITDDRDRLQGKLNDVMLEREKYIKFKYETYSKLDKLASKTEALEETCSSQKEKINILEQKLHAEREKLEMADLSAMETRATFEEQKRFIRKLQDQLADKEFQVVEGEKLRKKLHNTVLELKGNIRVFCRVRPLLRDRSETKTVVYYPTSIEMLGRGIELEQNGQKQLFTFDKVFNHDASQHDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTHTMMGRPDSPDLKGMIPLSLEQIFQTSQSLKDQGWNYKMQASVLEIYNETIKDLLLSNRSSGIDQTRAENSVHGKQYTIRHDKNGNTHVLDLTIVDVCSADEISSLLQKAAQIRSMGRTQMNEQSSRSHFVVTLRICGINENTEQQVQGVLNLIDLAGSERLSRSGATGERLKETQAINQSLSCLSNVIFALAKKEEHVPFRDSKLTHLLQPCLEGDSKTLMFVNISPDQSSIDESLCSLRFASRVNAVKLGIHNVRPRHPLNV*