Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358680 | XP_003599800.1 | 96.135 | 414 | 11 | 4 | 1 | 411 | 1 | 412 | 0.0 | 807 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358680 | sp|Q680C0|GDL62_ARATH | 28.056 | 360 | 225 | 9 | 39 | 382 | 9 | 350 | 9.12e-45 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358680 | G7IXG5 | 96.135 | 414 | 11 | 4 | 1 | 411 | 1 | 412 | 0.0 | 807 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0358680 | 0.838885 | 2.204797e-57 | -8.615850e-47 |
| Msa0016530 | Msa0358680 | 0.805496 | 1.297896e-49 | -8.615850e-47 |
| Msa0019930 | Msa0358680 | 0.804211 | 2.408336e-49 | -8.615850e-47 |
| Msa0020540 | Msa0358680 | 0.835553 | 1.569431e-56 | -8.615850e-47 |
| Msa0032980 | Msa0358680 | 0.836770 | 7.703319e-57 | -8.615850e-47 |
| Msa0062340 | Msa0358680 | 0.827060 | 1.926684e-54 | -8.615850e-47 |
| Msa0067380 | Msa0358680 | 0.812445 | 4.224986e-51 | -8.615850e-47 |
| Msa0068150 | Msa0358680 | 0.802219 | 6.222527e-49 | -8.615850e-47 |
| Msa0074360 | Msa0358680 | 0.805195 | 1.501075e-49 | -8.615850e-47 |
| Msa0078130 | Msa0358680 | 0.804023 | 2.635404e-49 | -8.615850e-47 |
| Msa0091350 | Msa0358680 | 0.834505 | 2.883568e-56 | -8.615850e-47 |
| Msa0094790 | Msa0358680 | 0.803272 | 3.772314e-49 | -8.615850e-47 |
| Msa0106630 | Msa0358680 | 0.818531 | 1.867447e-52 | -8.615850e-47 |
| Msa0122330 | Msa0358680 | 0.809257 | 2.068896e-50 | -8.615850e-47 |
| Msa0127340 | Msa0358680 | 0.824154 | 9.411472e-54 | -8.615850e-47 |
| Msa0140380 | Msa0358680 | 0.842519 | 2.461599e-58 | -8.615850e-47 |
| Msa0153210 | Msa0358680 | 0.814318 | 1.637896e-51 | -8.615850e-47 |
| Msa0159590 | Msa0358680 | 0.825676 | 4.115849e-54 | -8.615850e-47 |
| Msa0159620 | Msa0358680 | 0.845599 | 3.673284e-59 | -8.615850e-47 |
| Msa0165830 | Msa0358680 | 0.826694 | 2.356939e-54 | -8.615850e-47 |
| Msa0170070 | Msa0358680 | 0.807659 | 4.536141e-50 | -8.615850e-47 |
| Msa0232760 | Msa0358680 | 0.822138 | 2.781077e-53 | -8.615850e-47 |
| Msa0358680 | Msa0373500 | 0.829918 | 3.934032e-55 | -8.615850e-47 |
| Msa0358680 | Msa0383000 | 0.844439 | 7.553300e-59 | -8.615850e-47 |
| Msa0358680 | Msa0405620 | 0.898005 | 8.100767e-77 | -8.615850e-47 |
| Msa0358680 | Msa0416160 | 0.800807 | 1.211728e-48 | -8.615850e-47 |
| Msa0358680 | Msa0420670 | 0.821298 | 4.348342e-53 | -8.615850e-47 |
| Msa0358680 | Msa0433150 | 0.837730 | 4.373508e-57 | -8.615850e-47 |
| Msa0358680 | Msa0433760 | 0.809523 | 1.814724e-50 | -8.615850e-47 |
| Msa0358680 | Msa0462780 | 0.807562 | 4.756444e-50 | -8.615850e-47 |
| Msa0358680 | Msa0466520 | 0.818545 | 1.854046e-52 | -8.615850e-47 |
| Msa0358680 | Msa0468620 | 0.822742 | 2.013479e-53 | -8.615850e-47 |
| Msa0358680 | Msa0477630 | 0.808593 | 2.869955e-50 | -8.615850e-47 |
| Msa0358680 | Msa0480730 | 0.809467 | 1.864923e-50 | -8.615850e-47 |
| Msa0358680 | Msa0481890 | 0.821833 | 3.271654e-53 | -8.615850e-47 |
| Msa0358680 | Msa0498550 | 0.865132 | 7.368162e-65 | -8.615850e-47 |
| Msa0358680 | Msa0512530 | 0.821340 | 4.254472e-53 | -8.615850e-47 |
| Msa0358680 | Msa0513080 | 0.827629 | 1.407721e-54 | -8.615850e-47 |
| Msa0358680 | Msa0513560 | 0.825880 | 3.682798e-54 | -8.615850e-47 |
| Msa0358680 | Msa0514500 | 0.824207 | 9.148463e-54 | -8.615850e-47 |
| Msa0358680 | Msa0521680 | 0.830427 | 2.955013e-55 | -8.615850e-47 |
| Msa0358680 | Msa0524520 | 0.832320 | 1.011056e-55 | -8.615850e-47 |
| Msa0358680 | Msa0531960 | 0.826515 | 2.600726e-54 | -8.615850e-47 |
| Msa0358680 | Msa0534100 | 0.802403 | 5.703999e-49 | -8.615850e-47 |
| Msa0358680 | Msa0554300 | 0.810326 | 1.218930e-50 | -8.615850e-47 |
| Msa0358680 | Msa0559100 | 0.817423 | 3.323755e-52 | -8.615850e-47 |
| Msa0358680 | Msa0561560 | 0.813607 | 2.349689e-51 | -8.615850e-47 |
| Msa0358680 | Msa0563740 | 0.808181 | 3.513782e-50 | -8.615850e-47 |
| Msa0358680 | Msa0563900 | 0.841223 | 5.411350e-58 | -8.615850e-47 |
| Msa0358680 | Msa0569530 | 0.802908 | 4.486647e-49 | -8.615850e-47 |
| Msa0358680 | Msa0577450 | 0.815321 | 9.813918e-52 | -8.615850e-47 |
| Msa0358680 | Msa0577820 | 0.807299 | 5.409159e-50 | -8.615850e-47 |
| Msa0358680 | Msa0580810 | 0.802271 | 6.071916e-49 | -8.615850e-47 |
| Msa0358680 | Msa0586200 | 0.804140 | 2.492435e-49 | -8.615850e-47 |
| Msa0358680 | Msa0590200 | 0.804208 | 2.411944e-49 | -8.615850e-47 |
| Msa0358680 | Msa0606100 | 0.800269 | 1.559805e-48 | -8.615850e-47 |
| Msa0358680 | Msa0607800 | 0.829341 | 5.433859e-55 | -8.615850e-47 |
| Msa0358680 | Msa0613630 | 0.838000 | 3.727803e-57 | -8.615850e-47 |
| Msa0358680 | Msa0620500 | 0.810859 | 9.349046e-51 | -8.615850e-47 |
| Msa0358680 | Msa0621710 | 0.836490 | 9.078530e-57 | -8.615850e-47 |
| Msa0358680 | Msa0647440 | 0.801056 | 1.077841e-48 | -8.615850e-47 |
| Msa0358680 | Msa0648040 | 0.821791 | 3.345375e-53 | -8.615850e-47 |
| Msa0358680 | Msa0648760 | 0.813794 | 2.136768e-51 | -8.615850e-47 |
| Msa0358680 | Msa0668900 | 0.805082 | 1.584776e-49 | -8.615850e-47 |
| Msa0358680 | Msa0690320 | 0.800318 | 1.524970e-48 | -8.615850e-47 |
| Msa0358680 | Msa0690740 | 0.819344 | 1.220180e-52 | -8.615850e-47 |
| Msa0358680 | Msa0709440 | 0.820738 | 5.853069e-53 | -8.615850e-47 |
| Msa0358680 | Msa0714520 | 0.822651 | 2.113425e-53 | -8.615850e-47 |
| Msa0358680 | Msa0717900 | 0.834496 | 2.898235e-56 | -8.615850e-47 |
| Msa0358680 | Msa0743440 | 0.809245 | 2.080919e-50 | -8.615850e-47 |
| Msa0358680 | Msa0745720 | 0.807772 | 4.292359e-50 | -8.615850e-47 |
| Msa0358680 | Msa0773630 | 0.814861 | 1.241922e-51 | -8.615850e-47 |
| Msa0358680 | Msa0778600 | 0.812152 | 4.895422e-51 | -8.615850e-47 |
| Msa0358680 | Msa0780910 | 0.831229 | 1.879027e-55 | -8.615850e-47 |
| Msa0358680 | Msa0811020 | 0.811502 | 6.781229e-51 | -8.615850e-47 |
| Msa0358680 | Msa0816080 | 0.820459 | 6.785055e-53 | -8.615850e-47 |
| Msa0358680 | Msa0821160 | 0.813285 | 2.765928e-51 | -8.615850e-47 |
| Msa0358680 | Msa0857890 | 0.802440 | 5.603641e-49 | -8.615850e-47 |
| Msa0358680 | Msa0863620 | 0.814977 | 1.170045e-51 | -8.615850e-47 |
| Msa0358680 | Msa0866530 | 0.807496 | 4.914386e-50 | -8.615850e-47 |
| Msa0358680 | Msa0867110 | 0.805961 | 1.036546e-49 | -8.615850e-47 |
| Msa0358680 | Msa0879920 | 0.817219 | 3.693259e-52 | -8.615850e-47 |
| Msa0358680 | Msa0931590 | 0.835192 | 1.935852e-56 | -8.615850e-47 |
| Msa0358680 | Msa0989370 | 0.801049 | 1.081454e-48 | -8.615850e-47 |
| Msa0358680 | Msa1035220 | 0.806294 | 8.821179e-50 | -8.615850e-47 |
| Msa0358680 | Msa1082380 | 0.818268 | 2.142222e-52 | -8.615850e-47 |
| Msa0358680 | Msa1084530 | 0.828970 | 6.687116e-55 | -8.615850e-47 |
| Msa0358680 | Msa1125820 | 0.825548 | 4.414881e-54 | -8.615850e-47 |
| Msa0358680 | Msa1125990 | 0.822179 | 2.720350e-53 | -8.615850e-47 |
| Msa0358680 | Msa1127280 | 0.819542 | 1.099500e-52 | -8.615850e-47 |
| Msa0358680 | Msa1127470 | 0.804714 | 1.891570e-49 | -8.615850e-47 |
| Msa0358680 | Msa1148630 | 0.800194 | 1.615660e-48 | -8.615850e-47 |
| Msa0358680 | Msa1149450 | 0.815620 | 8.419452e-52 | -8.615850e-47 |
| Msa0358680 | Msa1159590 | 0.807654 | 4.547527e-50 | -8.615850e-47 |
| Msa0358680 | Msa1162880 | 0.807678 | 4.495915e-50 | -8.615850e-47 |
| Msa0358680 | Msa1165480 | 0.824529 | 7.682921e-54 | -8.615850e-47 |
| Msa0358680 | Msa1171290 | 0.817196 | 3.738290e-52 | -8.615850e-47 |
| Msa0358680 | Msa1188790 | 0.810066 | 1.386441e-50 | -8.615850e-47 |
| Msa0358680 | Msa1201780 | 0.818749 | 1.666362e-52 | -8.615850e-47 |
| Msa0358680 | Msa1213830 | 0.817310 | 3.523991e-52 | -8.615850e-47 |
| Msa0358680 | Msa1214350 | 0.814092 | 1.836727e-51 | -8.615850e-47 |
| Msa0358680 | Msa1215980 | 0.811346 | 7.331252e-51 | -8.615850e-47 |
| Msa0358680 | Msa1218820 | 0.817197 | 3.736357e-52 | -8.615850e-47 |
| Msa0358680 | Msa1254420 | 0.814343 | 1.616853e-51 | -8.615850e-47 |
| Msa0358680 | Msa1254540 | 0.843706 | 1.188187e-58 | -8.615850e-47 |
| Msa0358680 | Msa1263740 | 0.840652 | 7.643095e-58 | -8.615850e-47 |
| Msa0358680 | Msa1263780 | 0.840468 | 8.541740e-58 | -8.615850e-47 |
| Msa0358680 | Msa1263900 | 0.802044 | 6.762941e-49 | -8.615850e-47 |
| Msa0358680 | Msa1294460 | 0.834347 | 3.159360e-56 | -8.615850e-47 |
| Msa0358680 | Msa1294790 | 0.834227 | 3.386376e-56 | -8.615850e-47 |
| Msa0358680 | Msa1300460 | 0.817411 | 3.343810e-52 | -8.615850e-47 |
| Msa0358680 | Msa1306790 | 0.818356 | 2.045555e-52 | -8.615850e-47 |
| Msa0358680 | Msa1332950 | 0.821061 | 4.933338e-53 | -8.615850e-47 |
| Msa0358680 | Msa1338210 | 0.804820 | 1.797708e-49 | -8.615850e-47 |
| Msa0358680 | Msa1359980 | 0.808012 | 3.816971e-50 | -8.615850e-47 |
| Msa0358680 | Msa1361930 | 0.810901 | 9.155174e-51 | -8.615850e-47 |
| Msa0358680 | Msa1362130 | 0.805647 | 1.206907e-49 | -8.615850e-47 |
| Msa0358680 | Msa1364410 | 0.810952 | 8.924666e-51 | -8.615850e-47 |
| Msa0358680 | Msa1381470 | 0.823895 | 1.082569e-53 | -8.615850e-47 |
| Msa0358680 | Msa1384150 | 0.827248 | 1.737144e-54 | -8.615850e-47 |
| Msa0358680 | Msa1387440 | 0.826824 | 2.194133e-54 | -8.615850e-47 |
| Msa0358680 | Msa1387500 | 0.818134 | 2.296402e-52 | -8.615850e-47 |
| Msa0358680 | Msa1406720 | 0.822394 | 2.424789e-53 | -8.615850e-47 |
| Msa0358680 | Msa1429070 | 0.802535 | 5.357736e-49 | -8.615850e-47 |
| Msa0358680 | Msa1434640 | 0.835525 | 1.594769e-56 | -8.615850e-47 |
| Msa0358680 | Msa1450190 | 0.847847 | 8.926594e-60 | -8.615850e-47 |
| Msa0358680 | Msa1457840 | 0.804141 | 2.490920e-49 | -8.615850e-47 |
| Msa0358680 | Msa1465360 | 0.803739 | 3.018579e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358680 | MtrunA17_Chr3g0096121 | 96.135 | 414 | 11 | 4 | 1 | 411 | 1 | 412 | 0.0 | 807 |
| Msa0358680 | MtrunA17_Chr5g0442991 | 72.237 | 371 | 82 | 6 | 32 | 393 | 10 | 368 | 0.0 | 543 |
| Msa0358680 | MtrunA17_Chr5g0443021 | 58.516 | 364 | 132 | 6 | 42 | 394 | 16 | 371 | 5.95e-138 | 404 |
| Msa0358680 | MtrunA17_Chr5g0443011 | 55.479 | 292 | 111 | 7 | 102 | 383 | 7 | 289 | 1.89e-100 | 300 |
| Msa0358680 | MtrunA17_Chr8g0388281 | 33.518 | 361 | 201 | 8 | 38 | 382 | 7 | 344 | 8.39e-59 | 195 |
| Msa0358680 | MtrunA17_Chr5g0396551 | 33.889 | 360 | 193 | 9 | 39 | 379 | 8 | 341 | 3.35e-52 | 178 |
| Msa0358680 | MtrunA17_Chr5g0410331 | 30.495 | 364 | 202 | 7 | 38 | 379 | 7 | 341 | 3.71e-48 | 167 |
| Msa0358680 | MtrunA17_Chr5g0443031 | 44.516 | 155 | 61 | 6 | 245 | 393 | 3 | 138 | 2.58e-27 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358680 | AT5G50890.1 | 69.169 | 373 | 103 | 5 | 30 | 393 | 37 | 406 | 0.0 | 527 |
| Msa0358680 | AT2G05260.1 | 29.973 | 367 | 218 | 10 | 39 | 382 | 8 | 358 | 2.89e-48 | 168 |
| Msa0358680 | AT5G24230.1 | 31.073 | 354 | 199 | 8 | 39 | 368 | 22 | 354 | 1.05e-47 | 167 |
| Msa0358680 | AT5G24230.3 | 31.073 | 354 | 199 | 8 | 39 | 368 | 22 | 354 | 1.05e-47 | 167 |
| Msa0358680 | AT5G24230.2 | 31.073 | 354 | 199 | 8 | 39 | 368 | 22 | 354 | 1.05e-47 | 167 |
| Msa0358680 | AT4G10955.2 | 28.056 | 360 | 225 | 9 | 39 | 382 | 9 | 350 | 9.27e-46 | 161 |
| Msa0358680 | AT4G10955.1 | 28.056 | 360 | 225 | 9 | 39 | 382 | 9 | 350 | 9.27e-46 | 161 |
| Msa0358680 | AT2G05260.2 | 31.884 | 276 | 172 | 5 | 39 | 314 | 8 | 267 | 1.46e-44 | 157 |
| Msa0358680 | AT5G24220.1 | 27.855 | 359 | 212 | 8 | 38 | 376 | 24 | 355 | 1.83e-42 | 153 |
| Msa0358680 | AT5G24180.1 | 28.375 | 363 | 206 | 10 | 38 | 376 | 22 | 354 | 1.69e-39 | 145 |
| Msa0358680 | AT5G24200.2 | 28.852 | 357 | 194 | 9 | 39 | 368 | 8 | 331 | 8.29e-34 | 129 |
| Msa0358680 | AT5G24200.3 | 28.852 | 357 | 194 | 9 | 39 | 368 | 8 | 331 | 8.29e-34 | 129 |
| Msa0358680 | AT5G24200.1 | 28.852 | 357 | 194 | 9 | 39 | 368 | 8 | 331 | 8.29e-34 | 129 |
| Msa0358680 | AT5G24210.2 | 28.732 | 355 | 196 | 13 | 42 | 370 | 16 | 339 | 5.21e-27 | 110 |
| Msa0358680 | AT5G24210.3 | 28.732 | 355 | 196 | 13 | 42 | 370 | 16 | 339 | 5.21e-27 | 110 |
| Msa0358680 | AT5G24210.1 | 28.732 | 355 | 196 | 13 | 42 | 370 | 16 | 339 | 5.21e-27 | 110 |
| Msa0358680 | AT5G24190.1 | 24.380 | 242 | 142 | 5 | 162 | 376 | 3 | 230 | 1.27e-16 | 79.3 |
Find 77 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTTGGTTAATCTTAAT+TGG | 0.166949 | 3_1:+44033114 | Msa0358680:CDS |
| ACATGACAACCATTATTATT+TGG | 0.185396 | 3_1:-44035883 | None:intergenic |
| AGCTTGAAGAATCATAATTT+TGG | 0.238345 | 3_1:+44035733 | Msa0358680:CDS |
| TCTTTCTCATTTGATCTATC+AGG | 0.253369 | 3_1:-44035826 | None:intergenic |
| CTTAGTGCTAAAACAGCTTT+TGG | 0.294791 | 3_1:-44035301 | None:intergenic |
| ATGACAGTTCTCTTGTAGTT+TGG | 0.302940 | 3_1:-44035061 | None:intergenic |
| AAAGGTGTTTGTTGTGAATA+AGG | 0.307684 | 3_1:+44035912 | Msa0358680:CDS |
| CTCGCTTGGGAAAGCCTAAA+AGG | 0.308656 | 3_1:+44035382 | Msa0358680:CDS |
| TGTGTCTGGTCCAAGGAATT+TGG | 0.320679 | 3_1:+44033100 | Msa0358680:CDS |
| TTGAAGGGAATCCACCAATT+TGG | 0.321746 | 3_1:-44035160 | None:intergenic |
| TCATGTTGTTGTTAAGGTTT+CGG | 0.341956 | 3_1:-44032962 | None:intergenic |
| CCTTATGCATTTCATGTGTC+TGG | 0.356029 | 3_1:+44033086 | Msa0358680:CDS |
| TGTGTAGCAGGACATTCATT+AGG | 0.374475 | 3_1:+44035475 | Msa0358680:CDS |
| TAATTCTTCTCAAGTATTGC+AGG | 0.375963 | 3_1:+44036071 | Msa0358680:CDS |
| AGGTATCAACACAAGCAAAT+AGG | 0.380464 | 3_1:-44036154 | None:intergenic |
| AAAATGCTCTAGCTCCAAAT+TGG | 0.383483 | 3_1:+44035146 | Msa0358680:CDS |
| AGAAGTAAAAGAAGTGGAAA+AGG | 0.385546 | 3_1:+44033016 | Msa0358680:CDS |
| CAGCTTAAATCTTTGTATAC+AGG | 0.386722 | 3_1:+44036033 | Msa0358680:CDS |
| TAATAAGGTCTTGCTCTCAT+TGG | 0.387838 | 3_1:+44036108 | Msa0358680:exon |
| ATGACCTTCGGTTCCTCGCT+TGG | 0.396243 | 3_1:+44035368 | Msa0358680:CDS |
| TCAACTCCTTCGCTGCTTGA+AGG | 0.414457 | 3_1:-44035655 | None:intergenic |
| TGACCTTCGGTTCCTCGCTT+GGG | 0.418160 | 3_1:+44035369 | Msa0358680:CDS |
| AGTAGCAATGTTTGTGTAGC+AGG | 0.421432 | 3_1:+44035463 | Msa0358680:CDS |
| GGAAAGGCTAGTAAATAATA+AGG | 0.423775 | 3_1:+44036093 | Msa0358680:exon |
| TTAAGATTAACCAAATTCCT+TGG | 0.425756 | 3_1:-44033110 | None:intergenic |
| AAAAGAAGTGGAAAAGGAAA+AGG | 0.433313 | 3_1:+44033022 | Msa0358680:CDS |
| AAATCAGTGTCTGATGCATA+TGG | 0.439991 | 3_1:+44035439 | Msa0358680:CDS |
| TGGTCTGATCAGTACTAAAT+CGG | 0.441069 | 3_1:-44035269 | None:intergenic |
| TCGTGTTCATGTTGTTGTTA+AGG | 0.454182 | 3_1:-44032968 | None:intergenic |
| CGAGGAACCGAAGGTCATCT+TGG | 0.457144 | 3_1:-44035363 | None:intergenic |
| CAGAAGTTTCATGAAGCTCA+TGG | 0.477562 | 3_1:+44035940 | Msa0358680:CDS |
| AATGTCGGTCCAAATAATAA+TGG | 0.479362 | 3_1:+44035874 | Msa0358680:CDS |
| TTTCGGTGCAATACTCGAAT+GGG | 0.486400 | 3_1:+44035228 | Msa0358680:CDS |
| GGAAGAAGAAGTAAAAGAAG+TGG | 0.498760 | 3_1:+44033010 | Msa0358680:CDS |
| TTTGTTAGCTTGTACTTGAA+GGG | 0.500967 | 3_1:-44035175 | None:intergenic |
| TATACAGGTGGTAGTGGTAG+TGG | 0.501866 | 3_1:+44036048 | Msa0358680:CDS |
| GAAACAACAACAAGAAGAGT+TGG | 0.503495 | 3_1:+44035695 | Msa0358680:CDS |
| GCAGGACATTCATTAGGAGC+TGG | 0.512468 | 3_1:+44035481 | Msa0358680:CDS |
| ATGCTCTAGCTCCAAATTGG+TGG | 0.515850 | 3_1:+44035149 | Msa0358680:CDS |
| ATTGTGTTTGAAATCTGAAG+AGG | 0.516069 | 3_1:-44032910 | None:intergenic |
| GAGATCTCATTAGTTCTAGC+TGG | 0.517088 | 3_1:+44033138 | Msa0358680:CDS |
| GGAAAATCGTTAGCAAAAGA+AGG | 0.524713 | 3_1:+44035520 | Msa0358680:CDS |
| CCAGACACATGAAATGCATA+AGG | 0.538942 | 3_1:-44033086 | None:intergenic |
| TTCTCAAGTATTGCAGGGAA+AGG | 0.542324 | 3_1:+44036077 | Msa0358680:CDS |
| CAACAACATGAACACGAACA+TGG | 0.543272 | 3_1:+44032974 | Msa0358680:exon |
| TCTTTGTATACAGGTGGTAG+TGG | 0.544485 | 3_1:+44036042 | Msa0358680:CDS |
| AAAGCCTAAAAGGTTCTGTA+AGG | 0.545305 | 3_1:+44035392 | Msa0358680:CDS |
| GAGACATCCAAGATGACCTT+CGG | 0.546318 | 3_1:+44035356 | Msa0358680:CDS |
| AGAGGAAAGAGCGGAAGTGA+AGG | 0.546716 | 3_1:-44032892 | None:intergenic |
| GGATGTCTCTTCGCATTGTG+TGG | 0.558898 | 3_1:-44035342 | None:intergenic |
| GTTGTTGTGGTTGAAAAGCA+AGG | 0.564724 | 3_1:+44033044 | Msa0358680:CDS |
| GATTCTCTTCCAAGCTAACT+CGG | 0.565024 | 3_1:-44035620 | None:intergenic |
| AATTCTTCTCAAGTATTGCA+GGG | 0.565859 | 3_1:+44036072 | Msa0358680:CDS |
| CATTTCATGTGTCTGGTCCA+AGG | 0.572346 | 3_1:+44033093 | Msa0358680:CDS |
| GCTATGAGTCTAAGAAACAT+TGG | 0.572525 | 3_1:+44035589 | Msa0358680:CDS |
| ACAAGAAGAGTTGGATGCCA+TGG | 0.575559 | 3_1:+44035704 | Msa0358680:CDS |
| GATAATAACAAGGAGAATGT+CGG | 0.586582 | 3_1:+44035859 | Msa0358680:CDS |
| CTCATAGCAATTGAAACAGA+AGG | 0.596681 | 3_1:-44035574 | None:intergenic |
| ATGCTTCCTTCAAGCAGCGA+AGG | 0.596900 | 3_1:+44035649 | Msa0358680:CDS |
| TTTCCCAAGCGAGGAACCGA+AGG | 0.599086 | 3_1:-44035372 | None:intergenic |
| CTTAAATCTTTGTATACAGG+TGG | 0.607222 | 3_1:+44036036 | Msa0358680:CDS |
| TGGTTGTCATGTTGCTGCAA+AGG | 0.611656 | 3_1:+44035894 | Msa0358680:CDS |
| AGATCAAATGAGAAAGATGA+TGG | 0.614254 | 3_1:+44035832 | Msa0358680:CDS |
| GTTGATAATATCAACAACGA+TGG | 0.618756 | 3_1:+44035673 | Msa0358680:CDS |
| TAGCAATTGAAACAGAAGGC+GGG | 0.620328 | 3_1:-44035570 | None:intergenic |
| CTCATGGAATTGAACAATGG+TGG | 0.620564 | 3_1:+44035956 | Msa0358680:CDS |
| TGATGGTGGTGATAATAACA+AGG | 0.621372 | 3_1:+44035849 | Msa0358680:CDS |
| GAACATGGAAATCACTACAA+AGG | 0.627680 | 3_1:+44032989 | Msa0358680:CDS |
| GAAATCTGAAGAGGAAAGAG+CGG | 0.643468 | 3_1:-44032901 | None:intergenic |
| TTCTTCAAGCTAGTTAACCA+TGG | 0.647087 | 3_1:-44035721 | None:intergenic |
| GGAAAAGGAAAAGGTTGTTG+TGG | 0.677635 | 3_1:+44033031 | Msa0358680:CDS |
| CTATTGTTCACATAGAGATG+AGG | 0.677824 | 3_1:-44035772 | None:intergenic |
| ATAGCAATTGAAACAGAAGG+CGG | 0.679402 | 3_1:-44035571 | None:intergenic |
| TTAGTACTGATCAGACCAAG+TGG | 0.693039 | 3_1:+44035274 | Msa0358680:CDS |
| ACACTTATAGACGAAAGAGA+CGG | 0.699729 | 3_1:+44035199 | Msa0358680:CDS |
| TCAAATGAGAAAGATGATGG+TGG | 0.706323 | 3_1:+44035835 | Msa0358680:CDS |
| AAGCTCATGGAATTGAACAA+TGG | 0.723699 | 3_1:+44035953 | Msa0358680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGAATTTTGAATTTAAATTT+AGG | + | chr3_1:44033406-44033425 | Msa0358680:intron | 10.0% |
| !!! | GAATTTTGAATTTAAATTTA+GGG | + | chr3_1:44033407-44033426 | Msa0358680:intron | 10.0% |
| !! | ATTAAGGAAATAAATAAATT+GGG | - | chr3_1:44033815-44033834 | None:intergenic | 10.0% |
| !! | AATTAAGGAAATAAATAAAT+TGG | - | chr3_1:44033816-44033835 | None:intergenic | 10.0% |
| !! | ATAATTTAAGAAAATTGAAA+TGG | + | chr3_1:44034076-44034095 | Msa0358680:intron | 10.0% |
| !! | TAATTTAAGAAAATTGAAAT+GGG | + | chr3_1:44034077-44034096 | Msa0358680:intron | 10.0% |
| !! | TTTATACATTTGTAATTTAT+TGG | + | chr3_1:44034284-44034303 | Msa0358680:intron | 10.0% |
| !! | TTTATACATTTGTAATTTAT+TGG | + | chr3_1:44034284-44034303 | Msa0358680:intron | 10.0% |
| !!! | CTTTCTTATTTTTATTTTTT+TGG | + | chr3_1:44036184-44036203 | Msa0358680:three_prime_UTR | 10.0% |
| !!! | ATTTGATTTGATGAAAATTT+TGG | + | chr3_1:44033193-44033212 | Msa0358680:intron | 15.0% |
| !!! | TTTTGAGTGAATTTAAAATT+TGG | + | chr3_1:44033251-44033270 | Msa0358680:intron | 15.0% |
| !!! | AAATTTGGTTTTATTTGAAA+TGG | + | chr3_1:44033266-44033285 | Msa0358680:intron | 15.0% |
| !!! | AATTTAAGTTAGTTTCTAAA+TGG | + | chr3_1:44033375-44033394 | Msa0358680:intron | 15.0% |
| !!! | ATTTAAGTTAGTTTCTAAAT+GGG | + | chr3_1:44033376-44033395 | Msa0358680:intron | 15.0% |
| !! | TTATTTACTCAAATTATTAG+CGG | - | chr3_1:44033610-44033629 | None:intergenic | 15.0% |
| !! | AATAAGTTACAATTGTATAA+AGG | - | chr3_1:44034820-44034839 | None:intergenic | 15.0% |
| !! | TTTATACAATTGTAACTTAT+TGG | + | chr3_1:44034819-44034838 | Msa0358680:intron | 15.0% |
| !! | AAAAATAAGAAAGTTAAACA+AGG | - | chr3_1:44036177-44036196 | None:intergenic | 15.0% |
| !!! | TGTTTTAGATTATTTCCTTT+GGG | - | chr3_1:44032871-44032890 | None:intergenic | 20.0% |
| !!! | TTGTTTTAGATTATTTCCTT+TGG | - | chr3_1:44032872-44032891 | None:intergenic | 20.0% |
| !! | ACAAAAGCTACAAATAAAAA+GGG | - | chr3_1:44033170-44033189 | None:intergenic | 20.0% |
| !! | AACAAAAGCTACAAATAAAA+AGG | - | chr3_1:44033171-44033190 | None:intergenic | 20.0% |
| !!! | AAATTTTGGTTTTTGTTATG+TGG | + | chr3_1:44033207-44033226 | Msa0358680:intron | 20.0% |
| !!! | AATTTTGGTTTTTGTTATGT+GGG | + | chr3_1:44033208-44033227 | Msa0358680:intron | 20.0% |
| !!! | ATAATTTTTTGATGAGTTTC+TGG | + | chr3_1:44033711-44033730 | Msa0358680:intron | 20.0% |
| !!! | TTCCTTAATTGTTTTGTAAT+TGG | + | chr3_1:44033826-44033845 | Msa0358680:intron | 20.0% |
| !!! | TCCTTAATTGTTTTGTAATT+GGG | + | chr3_1:44033827-44033846 | Msa0358680:intron | 20.0% |
| !! | ATTCATATCAAAACTAAACA+GGG | - | chr3_1:44033914-44033933 | None:intergenic | 20.0% |
| !! | AATTCATATCAAAACTAAAC+AGG | - | chr3_1:44033915-44033934 | None:intergenic | 20.0% |
| !! | AAACTTAAATAATTGAATGC+TGG | - | chr3_1:44034255-44034274 | None:intergenic | 20.0% |
| !! | AAACATAAATAATTGAAAGC+TGG | - | chr3_1:44034504-44034523 | None:intergenic | 20.0% |
| !! | TTTATAATATTGTTTGAGAG+AGG | + | chr3_1:44034901-44034920 | Msa0358680:intron | 20.0% |
| !!! | ATTATATGAAGTTCTAGTAA+AGG | - | chr3_1:44035007-44035026 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTTTGGACAAGT+TGG | + | chr3_1:44036193-44036212 | Msa0358680:three_prime_UTR | 20.0% |
| !! | TTTTAGATTATTTCCTTTGG+GGG | - | chr3_1:44032869-44032888 | None:intergenic | 25.0% |
| !!! | GTTTTAGATTATTTCCTTTG+GGG | - | chr3_1:44032870-44032889 | None:intergenic | 25.0% |
| ! | TTAAGATTAACCAAATTCCT+TGG | - | chr3_1:44033113-44033132 | None:intergenic | 25.0% |
| ! | GGAATTTGGTTAATCTTAAT+TGG | + | chr3_1:44033114-44033133 | Msa0358680:CDS | 25.0% |
| ! | TTGGTGAAAATTTGAGAAAA+TGG | + | chr3_1:44033344-44033363 | Msa0358680:intron | 25.0% |
| ! | TGGTGAAAATTTGAGAAAAT+GGG | + | chr3_1:44033345-44033364 | Msa0358680:intron | 25.0% |
| !! | ATCCGTTTTCAGAAAATATT+GGG | + | chr3_1:44033459-44033478 | Msa0358680:intron | 25.0% |
| !!! | AACCCAATATTTTCTGAAAA+CGG | - | chr3_1:44033464-44033483 | None:intergenic | 25.0% |
| ! | AGCTTCATTAATTTAACTAC+AGG | + | chr3_1:44033767-44033786 | Msa0358680:intron | 25.0% |
| ! | ATTAATTTAACTACAGGCTT+TGG | + | chr3_1:44033773-44033792 | Msa0358680:intron | 25.0% |
| ! | TCCCAATTACAAAACAATTA+AGG | - | chr3_1:44033831-44033850 | None:intergenic | 25.0% |
| ! | GAGAAAATCCATGATATTAA+TGG | - | chr3_1:44033887-44033906 | None:intergenic | 25.0% |
| !!! | TAGCATAATTGAGTTGATTA+TGG | + | chr3_1:44034339-44034358 | Msa0358680:intron | 25.0% |
| !!! | TAGCATAATTGAGTTGATTA+TGG | + | chr3_1:44034339-44034358 | Msa0358680:intron | 25.0% |
| ! | ATATGAAAAATAGAAGACTC+TGG | - | chr3_1:44034662-44034681 | None:intergenic | 25.0% |
| ! | ACTGATAATACAGTCAAATA+AGG | - | chr3_1:44034875-44034894 | None:intergenic | 25.0% |
| ! | ATTTGACTGTATTATCAGTA+TGG | + | chr3_1:44034876-44034895 | Msa0358680:intron | 25.0% |
| ! | TTTGACTGTATTATCAGTAT+GGG | + | chr3_1:44034877-44034896 | Msa0358680:intron | 25.0% |
| ! | AGAACGAAAATGAAAAACTA+GGG | - | chr3_1:44034957-44034976 | None:intergenic | 25.0% |
| ! | AAGAACGAAAATGAAAAACT+AGG | - | chr3_1:44034958-44034977 | None:intergenic | 25.0% |
| !! | AGCTTGAAGAATCATAATTT+TGG | + | chr3_1:44035733-44035752 | Msa0358680:CDS | 25.0% |
| !!! | AAGAATCATAATTTTGGTGT+TGG | + | chr3_1:44035739-44035758 | Msa0358680:CDS | 25.0% |
| !!! | ATAATTTTGGTGTTGGAAAA+TGG | + | chr3_1:44035746-44035765 | Msa0358680:CDS | 25.0% |
| !!! | TAATTTTGGTGTTGGAAAAT+GGG | + | chr3_1:44035747-44035766 | Msa0358680:CDS | 25.0% |
| ! | ACATGACAACCATTATTATT+TGG | - | chr3_1:44035886-44035905 | None:intergenic | 25.0% |
| ! | ATTGTGTTTGAAATCTGAAG+AGG | - | chr3_1:44032913-44032932 | None:intergenic | 30.0% |
| ! | TCATGTTGTTGTTAAGGTTT+CGG | - | chr3_1:44032965-44032984 | None:intergenic | 30.0% |
| AGAAGTAAAAGAAGTGGAAA+AGG | + | chr3_1:44033016-44033035 | Msa0358680:CDS | 30.0% | |
| AAAAGAAGTGGAAAAGGAAA+AGG | + | chr3_1:44033022-44033041 | Msa0358680:CDS | 30.0% | |
| ! | ACAGAGTGTGAATTATCTTT+TGG | + | chr3_1:44033293-44033312 | Msa0358680:intron | 30.0% |
| !! | GTGTGAATTATCTTTTGGTT+TGG | + | chr3_1:44033298-44033317 | Msa0358680:intron | 30.0% |
| !!! | TTGGTTTGGTACTTTTTTGA+AGG | + | chr3_1:44033312-44033331 | Msa0358680:intron | 30.0% |
| !!! | TGGTTTGGTACTTTTTTGAA+GGG | + | chr3_1:44033313-44033332 | Msa0358680:intron | 30.0% |
| !!! | GTACTTTTTTGAAGGGTTTA+GGG | + | chr3_1:44033320-44033339 | Msa0358680:intron | 30.0% |
| ! | GATCCGTTTTCAGAAAATAT+TGG | + | chr3_1:44033458-44033477 | Msa0358680:intron | 30.0% |
| ! | ATATTGGGTTTTCAGATTTG+AGG | + | chr3_1:44033474-44033493 | Msa0358680:intron | 30.0% |
| !! | GATTTGAGGTTTTTGATTGA+CGG | + | chr3_1:44033488-44033507 | Msa0358680:intron | 30.0% |
| !!! | ACTATGGATTTTTAGGTTTG+AGG | + | chr3_1:44033512-44033531 | Msa0358680:intron | 30.0% |
| TTGTAATTGGGATCGAAATT+TGG | + | chr3_1:44033839-44033858 | Msa0358680:intron | 30.0% | |
| TGTAATTGGGATCGAAATTT+GGG | + | chr3_1:44033840-44033859 | Msa0358680:intron | 30.0% | |
| TTATAAAAACCTGCTTCAAC+TGG | + | chr3_1:44033992-44034011 | Msa0358680:intron | 30.0% | |
| TTAGTCGTTAGACCAAAAAT+CGG | + | chr3_1:44034143-44034162 | Msa0358680:intron | 30.0% | |
| AAAATCAAACTCATTTCCAC+AGG | - | chr3_1:44034204-44034223 | None:intergenic | 30.0% | |
| !! | CTAGTTTCATTGATTTAACC+AGG | - | chr3_1:44034227-44034246 | None:intergenic | 30.0% |
| TGAGTTTAACATTGTCTGAT+AGG | + | chr3_1:44034365-44034384 | Msa0358680:intron | 30.0% | |
| GTTACTACTAACTCCAAAAT+CGG | + | chr3_1:44034393-44034412 | Msa0358680:intron | 30.0% | |
| TGAGTTTAACATTGTCTGAT+AGG | + | chr3_1:44034365-44034384 | Msa0358680:intron | 30.0% | |
| TGCTGAAAATATTAGAGACA+TGG | - | chr3_1:44034928-44034947 | None:intergenic | 30.0% | |
| ! | TCTCTAATATTTTCAGCAAG+AGG | + | chr3_1:44034930-44034949 | Msa0358680:intron | 30.0% |
| ! | TATGAAGTTCTAGTAAAGGT+TGG | - | chr3_1:44035003-44035022 | None:intergenic | 30.0% |
| !!! | TGTCATTGCTTGTTTTATAC+AGG | + | chr3_1:44035078-44035097 | Msa0358680:CDS | 30.0% |
| !! | TTTGTTAGCTTGTACTTGAA+GGG | - | chr3_1:44035178-44035197 | None:intergenic | 30.0% |
| !!! | TTTTGTTAGCTTGTACTTGA+AGG | - | chr3_1:44035179-44035198 | None:intergenic | 30.0% |
| !! | GTTGATAATATCAACAACGA+TGG | + | chr3_1:44035673-44035692 | Msa0358680:CDS | 30.0% |
| TCTTTCTCATTTGATCTATC+AGG | - | chr3_1:44035829-44035848 | None:intergenic | 30.0% | |
| AGATCAAATGAGAAAGATGA+TGG | + | chr3_1:44035832-44035851 | Msa0358680:CDS | 30.0% | |
| GATAATAACAAGGAGAATGT+CGG | + | chr3_1:44035859-44035878 | Msa0358680:CDS | 30.0% | |
| AATGTCGGTCCAAATAATAA+TGG | + | chr3_1:44035874-44035893 | Msa0358680:CDS | 30.0% | |
| !! | AAAGGTGTTTGTTGTGAATA+AGG | + | chr3_1:44035912-44035931 | Msa0358680:CDS | 30.0% |
| CAGCTTAAATCTTTGTATAC+AGG | + | chr3_1:44036033-44036052 | Msa0358680:CDS | 30.0% | |
| CTTAAATCTTTGTATACAGG+TGG | + | chr3_1:44036036-44036055 | Msa0358680:CDS | 30.0% | |
| ! | TAATTCTTCTCAAGTATTGC+AGG | + | chr3_1:44036071-44036090 | Msa0358680:CDS | 30.0% |
| ! | AATTCTTCTCAAGTATTGCA+GGG | + | chr3_1:44036072-44036091 | Msa0358680:CDS | 30.0% |
| GGAAAGGCTAGTAAATAATA+AGG | + | chr3_1:44036093-44036112 | Msa0358680:exon | 30.0% | |
| ! | TCGTGTTCATGTTGTTGTTA+AGG | - | chr3_1:44032971-44032990 | None:intergenic | 35.0% |
| GAACATGGAAATCACTACAA+AGG | + | chr3_1:44032989-44033008 | Msa0358680:CDS | 35.0% | |
| GGAAGAAGAAGTAAAAGAAG+TGG | + | chr3_1:44033010-44033029 | Msa0358680:CDS | 35.0% | |
| !!! | GGTACTTTTTTGAAGGGTTT+AGG | + | chr3_1:44033319-44033338 | Msa0358680:intron | 35.0% |
| !! | TTTTTGAAGGGTTTAGGGTT+TGG | + | chr3_1:44033325-44033344 | Msa0358680:intron | 35.0% |
| !! | GTTTTTGATTGACGGAACTA+TGG | + | chr3_1:44033496-44033515 | Msa0358680:intron | 35.0% |
| ! | TGACGGAACTATGGATTTTT+AGG | + | chr3_1:44033505-44033524 | Msa0358680:intron | 35.0% |
| AGTTTATGACCTATGAAGCA+CGG | + | chr3_1:44033547-44033566 | Msa0358680:intron | 35.0% | |
| GTAATTGGGATCGAAATTTG+GGG | + | chr3_1:44033841-44033860 | Msa0358680:intron | 35.0% | |
| !! | AGCATTGGCCATTAATATCA+TGG | + | chr3_1:44033876-44033895 | Msa0358680:intron | 35.0% |
| ACGATACTAACACTTAGACA+TGG | + | chr3_1:44034050-44034069 | Msa0358680:intron | 35.0% | |
| !! | GGAAATGAGTTTGATTTTCC+TGG | + | chr3_1:44034206-44034225 | Msa0358680:intron | 35.0% |
| !! | TTATTGACTCAATGAGTCAC+TGG | - | chr3_1:44034315-44034334 | None:intergenic | 35.0% |
| AAAATCAAACTCGTTTCCAC+AGG | - | chr3_1:44034453-44034472 | None:intergenic | 35.0% | |
| !! | TTATTGACTCAATGAGTCAC+TGG | - | chr3_1:44034315-44034334 | None:intergenic | 35.0% |
| AAAAATAGAAGACTCTGGCT+GGG | - | chr3_1:44034657-44034676 | None:intergenic | 35.0% | |
| CACTTGTGTTAGTATTGTGT+TGG | + | chr3_1:44034700-44034719 | Msa0358680:intron | 35.0% | |
| ! | TGTTAGTATTGTGTTGGTGT+CGG | + | chr3_1:44034706-44034725 | Msa0358680:intron | 35.0% |
| AAGTGTGAAGGAAACATAGA+AGG | + | chr3_1:44034761-44034780 | Msa0358680:intron | 35.0% | |
| ! | ATACCAATTTTGTTGCATGC+AGG | + | chr3_1:44035032-44035051 | Msa0358680:intron | 35.0% |
| ATGACAGTTCTCTTGTAGTT+TGG | - | chr3_1:44035064-44035083 | None:intergenic | 35.0% | |
| ! | AAAATGCTCTAGCTCCAAAT+TGG | + | chr3_1:44035146-44035165 | Msa0358680:CDS | 35.0% |
| ACACTTATAGACGAAAGAGA+CGG | + | chr3_1:44035199-44035218 | Msa0358680:CDS | 35.0% | |
| ! | GAAAGAGACGGTTCAATTTT+CGG | + | chr3_1:44035211-44035230 | Msa0358680:CDS | 35.0% |
| TGGTCTGATCAGTACTAAAT+CGG | - | chr3_1:44035272-44035291 | None:intergenic | 35.0% | |
| ! | CTTAGTGCTAAAACAGCTTT+TGG | - | chr3_1:44035304-44035323 | None:intergenic | 35.0% |
| !!! | AAAGCTGTTTTAGCACTAAG+AGG | + | chr3_1:44035304-44035323 | Msa0358680:CDS | 35.0% |
| AAAGCCTAAAAGGTTCTGTA+AGG | + | chr3_1:44035392-44035411 | Msa0358680:CDS | 35.0% | |
| ! | TGAACCTTACAGAACCTTTT+AGG | - | chr3_1:44035399-44035418 | None:intergenic | 35.0% |
| AAATCAGTGTCTGATGCATA+TGG | + | chr3_1:44035439-44035458 | Msa0358680:CDS | 35.0% | |
| GGAAAATCGTTAGCAAAAGA+AGG | + | chr3_1:44035520-44035539 | Msa0358680:CDS | 35.0% | |
| ATAGCAATTGAAACAGAAGG+CGG | - | chr3_1:44035574-44035593 | None:intergenic | 35.0% | |
| CTCATAGCAATTGAAACAGA+AGG | - | chr3_1:44035577-44035596 | None:intergenic | 35.0% | |
| GCTATGAGTCTAAGAAACAT+TGG | + | chr3_1:44035589-44035608 | Msa0358680:CDS | 35.0% | |
| GAAACAACAACAAGAAGAGT+TGG | + | chr3_1:44035695-44035714 | Msa0358680:CDS | 35.0% | |
| TTCTTCAAGCTAGTTAACCA+TGG | - | chr3_1:44035724-44035743 | None:intergenic | 35.0% | |
| CTATTGTTCACATAGAGATG+AGG | - | chr3_1:44035775-44035794 | None:intergenic | 35.0% | |
| ! | TCAAATGAGAAAGATGATGG+TGG | + | chr3_1:44035835-44035854 | Msa0358680:CDS | 35.0% |
| !! | TGATGGTGGTGATAATAACA+AGG | + | chr3_1:44035849-44035868 | Msa0358680:CDS | 35.0% |
| AAGCTCATGGAATTGAACAA+TGG | + | chr3_1:44035953-44035972 | Msa0358680:CDS | 35.0% | |
| TAATAAGGTCTTGCTCTCAT+TGG | + | chr3_1:44036108-44036127 | Msa0358680:exon | 35.0% | |
| AGGTATCAACACAAGCAAAT+AGG | - | chr3_1:44036157-44036176 | None:intergenic | 35.0% | |
| GAAATCTGAAGAGGAAAGAG+CGG | - | chr3_1:44032904-44032923 | None:intergenic | 40.0% | |
| CAACAACATGAACACGAACA+TGG | + | chr3_1:44032974-44032993 | Msa0358680:exon | 40.0% | |
| GGAAAAGGAAAAGGTTGTTG+TGG | + | chr3_1:44033031-44033050 | Msa0358680:CDS | 40.0% | |
| GTTGTTGTGGTTGAAAAGCA+AGG | + | chr3_1:44033044-44033063 | Msa0358680:CDS | 40.0% | |
| CCAGACACATGAAATGCATA+AGG | - | chr3_1:44033089-44033108 | None:intergenic | 40.0% | |
| CCTTATGCATTTCATGTGTC+TGG | + | chr3_1:44033086-44033105 | Msa0358680:CDS | 40.0% | |
| !! | GAGATCTCATTAGTTCTAGC+TGG | + | chr3_1:44033138-44033157 | Msa0358680:CDS | 40.0% |
| TCATGTGTCATGTTGATCTG+AGG | + | chr3_1:44033660-44033679 | Msa0358680:intron | 40.0% | |
| GAAATTTGGGGATCCTGATT+TGG | + | chr3_1:44033853-44033872 | Msa0358680:intron | 40.0% | |
| GCTGATTAGACCTATGAACA+CGG | + | chr3_1:44034014-44034033 | Msa0358680:intron | 40.0% | |
| CTAAGTGTTAGTATCGTGTC+TGG | - | chr3_1:44034047-44034066 | None:intergenic | 40.0% | |
| !! | AATCCTAGGTAGCATTGACT+CGG | - | chr3_1:44034125-44034144 | None:intergenic | 40.0% |
| TTGGTCTAACGACTAATCCT+AGG | - | chr3_1:44034139-44034158 | None:intergenic | 40.0% | |
| AGATGCATTTCCGATTGACA+TGG | - | chr3_1:44034178-44034197 | None:intergenic | 40.0% | |
| ATGTCAATCGGAAATGCATC+TGG | + | chr3_1:44034177-44034196 | Msa0358680:intron | 40.0% | |
| AGATGCATTTCCGATTGACA+TGG | - | chr3_1:44034178-44034197 | None:intergenic | 40.0% | |
| ATGTCAATCGGAAATGCATC+TGG | + | chr3_1:44034177-44034196 | Msa0358680:intron | 40.0% | |
| !! | GGAAACGAGTTTGATTTTGC+TGG | + | chr3_1:44034455-44034474 | Msa0358680:intron | 40.0% |
| AAAATAGAAGACTCTGGCTG+GGG | - | chr3_1:44034656-44034675 | None:intergenic | 40.0% | |
| GAAAAATAGAAGACTCTGGC+TGG | - | chr3_1:44034658-44034677 | None:intergenic | 40.0% | |
| ACACAAGTGCACAAAGTAGA+AGG | - | chr3_1:44034689-44034708 | None:intergenic | 40.0% | |
| ACTTCAGATTGAAGCGTGTT+TGG | - | chr3_1:44034745-44034764 | None:intergenic | 40.0% | |
| ! | GAAGTTCTAGTAAAGGTTGG+AGG | - | chr3_1:44035000-44035019 | None:intergenic | 40.0% |
| CTTCCTGCATGCAACAAAAT+TGG | - | chr3_1:44035038-44035057 | None:intergenic | 40.0% | |
| ! | CAATTTTGTTGCATGCAGGA+AGG | + | chr3_1:44035036-44035055 | Msa0358680:intron | 40.0% |
| !! | TTTGGAGCTAGAGCATTTTC+TGG | - | chr3_1:44035145-44035164 | None:intergenic | 40.0% |
| TTGAAGGGAATCCACCAATT+TGG | - | chr3_1:44035163-44035182 | None:intergenic | 40.0% | |
| !! | TTTTCGGTGCAATACTCGAA+TGG | + | chr3_1:44035227-44035246 | Msa0358680:CDS | 40.0% |
| ! | TTTCGGTGCAATACTCGAAT+GGG | + | chr3_1:44035228-44035247 | Msa0358680:CDS | 40.0% |
| !! | TTAGTACTGATCAGACCAAG+TGG | + | chr3_1:44035274-44035293 | Msa0358680:CDS | 40.0% |
| AGTAGCAATGTTTGTGTAGC+AGG | + | chr3_1:44035463-44035482 | Msa0358680:CDS | 40.0% | |
| TGTGTAGCAGGACATTCATT+AGG | + | chr3_1:44035475-44035494 | Msa0358680:CDS | 40.0% | |
| TAGCAATTGAAACAGAAGGC+GGG | - | chr3_1:44035573-44035592 | None:intergenic | 40.0% | |
| GATTCTCTTCCAAGCTAACT+CGG | - | chr3_1:44035623-44035642 | None:intergenic | 40.0% | |
| CAGAAGTTTCATGAAGCTCA+TGG | + | chr3_1:44035940-44035959 | Msa0358680:CDS | 40.0% | |
| CTCATGGAATTGAACAATGG+TGG | + | chr3_1:44035956-44035975 | Msa0358680:CDS | 40.0% | |
| TCTTTGTATACAGGTGGTAG+TGG | + | chr3_1:44036042-44036061 | Msa0358680:CDS | 40.0% | |
| ! | TTCTCAAGTATTGCAGGGAA+AGG | + | chr3_1:44036077-44036096 | Msa0358680:CDS | 40.0% |
| CATTTCATGTGTCTGGTCCA+AGG | + | chr3_1:44033093-44033112 | Msa0358680:CDS | 45.0% | |
| TGTGTCTGGTCCAAGGAATT+TGG | + | chr3_1:44033100-44033119 | Msa0358680:CDS | 45.0% | |
| AATGGCCAATGCTCCAAATC+AGG | - | chr3_1:44033869-44033888 | None:intergenic | 45.0% | |
| TCTAATCAGCCAGTTGAAGC+AGG | - | chr3_1:44034004-44034023 | None:intergenic | 45.0% | |
| ! | TGGTTTGTGTCCGTGTTCAT+AGG | - | chr3_1:44034027-44034046 | None:intergenic | 45.0% |
| !! | TGGTGACTCTGACCGATTTT+TGG | - | chr3_1:44034158-44034177 | None:intergenic | 45.0% |
| GTCAGAGTCACCATGTCAAT+CGG | + | chr3_1:44034165-44034184 | Msa0358680:intron | 45.0% | |
| ! | CGCTTCAATCTGAAGTGTGA+AGG | + | chr3_1:44034749-44034768 | Msa0358680:intron | 45.0% |
| AGGTTGGAGGATTCTCAATC+AGG | - | chr3_1:44034987-44035006 | None:intergenic | 45.0% | |
| ! | ATGCTCTAGCTCCAAATTGG+TGG | + | chr3_1:44035149-44035168 | Msa0358680:CDS | 45.0% |
| GAGACATCCAAGATGACCTT+CGG | + | chr3_1:44035356-44035375 | Msa0358680:CDS | 45.0% | |
| !!! | GCTGGTTTTGCACTTCAAGT+TGG | + | chr3_1:44035499-44035518 | Msa0358680:CDS | 45.0% |
| GAGAAAAAGCCGAGTTAGCT+TGG | + | chr3_1:44035611-44035630 | Msa0358680:CDS | 45.0% | |
| ACAAGAAGAGTTGGATGCCA+TGG | + | chr3_1:44035704-44035723 | Msa0358680:CDS | 45.0% | |
| TGGTTGTCATGTTGCTGCAA+AGG | + | chr3_1:44035894-44035913 | Msa0358680:CDS | 45.0% | |
| !! | TATACAGGTGGTAGTGGTAG+TGG | + | chr3_1:44036048-44036067 | Msa0358680:CDS | 45.0% |
| AGAGGAAAGAGCGGAAGTGA+AGG | - | chr3_1:44032895-44032914 | None:intergenic | 50.0% | |
| CCTATGAAGCACGGATACAC+CGG | + | chr3_1:44033556-44033575 | Msa0358680:intron | 50.0% | |
| !! | GGGATCCTGATTTGGAGCAT+TGG | + | chr3_1:44033861-44033880 | Msa0358680:intron | 50.0% |
| TTGCCGAGTCAATGCTACCT+AGG | + | chr3_1:44034119-44034138 | Msa0358680:intron | 50.0% | |
| !! | CATGGTGACTCGACCGATTT+TGG | - | chr3_1:44034409-44034428 | None:intergenic | 50.0% |
| GGTCGAGTCACCATGTCAAT+CGG | + | chr3_1:44034414-44034433 | Msa0358680:intron | 50.0% | |
| !! | ACAGCTTTTGGTGCACCACT+TGG | - | chr3_1:44035292-44035311 | None:intergenic | 50.0% |
| GGATGTCTCTTCGCATTGTG+TGG | - | chr3_1:44035345-44035364 | None:intergenic | 50.0% | |
| ! | CTTTTAGGCTTTCCCAAGCG+AGG | - | chr3_1:44035384-44035403 | None:intergenic | 50.0% |
| CTCGCTTGGGAAAGCCTAAA+AGG | + | chr3_1:44035382-44035401 | Msa0358680:CDS | 50.0% | |
| GCAGGACATTCATTAGGAGC+TGG | + | chr3_1:44035481-44035500 | Msa0358680:CDS | 50.0% | |
| ATGCTTCCTTCAAGCAGCGA+AGG | + | chr3_1:44035649-44035668 | Msa0358680:CDS | 50.0% | |
| TCAACTCCTTCGCTGCTTGA+AGG | - | chr3_1:44035658-44035677 | None:intergenic | 50.0% | |
| CCGGTGTATCCGTGCTTCAT+AGG | - | chr3_1:44033559-44033578 | None:intergenic | 55.0% | |
| CGGAAATGCATCTGGACCTG+TGG | + | chr3_1:44034185-44034204 | Msa0358680:intron | 55.0% | |
| CGGAAATGCATCTGGACCTG+TGG | + | chr3_1:44034185-44034204 | Msa0358680:intron | 55.0% | |
| CGAGGAACCGAAGGTCATCT+TGG | - | chr3_1:44035366-44035385 | None:intergenic | 55.0% | |
| ATGACCTTCGGTTCCTCGCT+TGG | + | chr3_1:44035368-44035387 | Msa0358680:CDS | 55.0% | |
| TGACCTTCGGTTCCTCGCTT+GGG | + | chr3_1:44035369-44035388 | Msa0358680:CDS | 55.0% | |
| TTTCCCAAGCGAGGAACCGA+AGG | - | chr3_1:44035375-44035394 | None:intergenic | 55.0% | |
| CGGATACACCGGACACGACA+CGG | + | chr3_1:44033567-44033586 | Msa0358680:intron | 60.0% | |
| GTCTGTGTCCGTGTCGTGTC+CGG | - | chr3_1:44033578-44033597 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 44032865 | 44036283 | 44032865 | ID=Msa0358680;Name=Msa0358680 |
| chr3_1 | mRNA | 44032865 | 44036283 | 44032865 | ID=Msa0358680-mRNA-1;Parent=Msa0358680;Name=Msa0358680-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|173|411 |
| chr3_1 | exon | 44032865 | 44033159 | 44032865 | ID=Msa0358680-mRNA-1:exon:7811;Parent=Msa0358680-mRNA-1 |
| chr3_1 | exon | 44035054 | 44036283 | 44035054 | ID=Msa0358680-mRNA-1:exon:7812;Parent=Msa0358680-mRNA-1 |
| chr3_1 | five_prime_UTR | 44032865 | 44032980 | 44032865 | ID=Msa0358680-mRNA-1:five_prime_utr;Parent=Msa0358680-mRNA-1 |
| chr3_1 | CDS | 44032981 | 44033159 | 44032981 | ID=Msa0358680-mRNA-1:cds;Parent=Msa0358680-mRNA-1 |
| chr3_1 | CDS | 44035054 | 44036110 | 44035054 | ID=Msa0358680-mRNA-1:cds;Parent=Msa0358680-mRNA-1 |
| chr3_1 | three_prime_UTR | 44036111 | 44036283 | 44036111 | ID=Msa0358680-mRNA-1:three_prime_utr;Parent=Msa0358680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
