AlfalfaGEDB | Msa0499580

M. sativa cultivar zhongmu-4 / Msa0499580

KEGG: -
GO: GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499580	RHN66942.1	86.411	287	39	0	1	287	88	374	1.57e-177	509

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499580	sp\|Q6JN46\|EIX2_SOLLC	38.436	307	166	5	1	284	704	1010	2.14e-53	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499580	A0A396IMZ6	86.411	287	39	0	1	287	88	374	7.48e-178	509

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0014790	Msa0499580	0.822715	2.042200e-53	-8.615850e-47
Msa0043460	Msa0499580	0.801014	1.099725e-48	-8.615850e-47
Msa0050240	Msa0499580	0.854611	1.097021e-61	-8.615850e-47
Msa0063100	Msa0499580	0.833461	5.263169e-56	-8.615850e-47
Msa0063170	Msa0499580	0.838083	3.549410e-57	-8.615850e-47
Msa0088550	Msa0499580	0.806585	7.659126e-50	-8.615850e-47
Msa0104360	Msa0499580	0.828574	8.334823e-55	-8.615850e-47
Msa0104390	Msa0499580	0.810090	1.369814e-50	-8.615850e-47
Msa0135360	Msa0499580	0.804542	2.055283e-49	-8.615850e-47
Msa0153440	Msa0499580	0.832524	9.000963e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499580	MtrunA17_Chr3g0097291	86.411	287	39	0	1	287	88	374	0.0	509
Msa0499580	MtrunA17_Chr3g0097281	82.578	287	50	0	1	287	25	311	9.05e-174	486
Msa0499580	MtrunA17_Chr4g0023651	81.250	288	54	0	1	288	208	495	2.30e-169	482
Msa0499580	MtrunA17_Chr3g0097361	83.624	287	47	0	1	287	572	858	2.55e-169	494
Msa0499580	MtrunA17_Chr3g0097361	29.570	186	116	5	5	184	218	394	8.82e-12	67.0
Msa0499580	MtrunA17_Chr3g0097411	84.321	287	45	0	1	287	493	779	3.48e-169	492
Msa0499580	MtrunA17_Chr3g0097761	81.882	287	52	0	1	287	505	791	6.78e-166	484
Msa0499580	MtrunA17_Chr3g0097501	77.431	288	64	1	1	287	1	288	1.37e-160	452
Msa0499580	MtrunA17_Chr8g0345411	77.320	291	59	3	1	284	57	347	1.56e-158	449
Msa0499580	MtrunA17_Chr3g0095011	78.397	287	61	1	1	287	507	792	3.28e-157	461

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0499580	AT1G74190.1	32.931	331	162	7	1	274	633	960	8.98e-41	154
Msa0499580	AT1G74190.1	29.565	230	139	9	1	216	137	357	3.58e-13	71.6
Msa0499580	AT1G74190.1	25.888	197	120	5	1	185	418	600	2.40e-12	68.9
Msa0499580	AT1G74190.1	29.612	206	120	7	1	185	467	668	1.77e-11	66.2
Msa0499580	AT2G25470.3	30.284	317	175	5	1	272	652	967	1.40e-39	150
Msa0499580	AT2G25470.3	32.979	188	116	6	1	184	147	328	4.43e-14	74.3
Msa0499580	AT2G25470.3	31.285	179	95	5	1	169	559	719	7.69e-13	70.5
Msa0499580	AT2G25470.3	26.693	251	135	5	10	214	446	693	1.13e-11	67.0
Msa0499580	AT2G25470.1	30.284	317	175	5	1	272	609	924	1.83e-39	150
Msa0499580	AT2G25470.1	32.979	188	116	6	1	184	129	310	5.56e-14	74.3

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Find 85 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAGTAGAGGAGCTGATGG+TGG	0.465613	3_4:+38544099	Msa0499580:CDS
AAGGATTGTGACATCTTGAT+TGG	0.380319	3_4:-38541508	None:intergenic
AAGTTCCATTGGAATTGTTT+CGG	0.382005	3_4:+38541803	Msa0499580:CDS
AATGGAGGCATGCATACTTT+CGG	0.436738	3_4:+38542256	Msa0499580:CDS
ACAATACCAAGAGAGATTGG+AGG	0.646887	3_4:+38541874	Msa0499580:CDS
ACAATTGCAGATCATGAACT+TGG	0.440305	3_4:+38541459	None:intergenic
ACCATTGATTTATTTACCAA+AGG	0.539317	3_4:+38541709	Msa0499580:CDS
ACCTTTGGTAAATAAATCAA+TGG	0.443931	3_4:-38541710	None:intergenic
ACTAGCCGAAACAATTCCAA+TGG	0.609211	3_4:-38541808	None:intergenic
ACTTACTGATTCAAACTTTG+GGG	0.583412	3_4:+38543977	Msa0499580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGTTTAAATAGTTGTGGT+GGG	-	chr3_4:38541576-38541595	None:intergenic	30.0%
ATACACATAATCTTGACCTT+TGG	-	chr3_4:38541728-38541747	None:intergenic	30.0%
AAGTTCCATTGGAATTGTTT+CGG	+	chr3_4:38541803-38541822	Msa0499580:CDS	30.0%
CAAACTCAATGTAACTTTGA+TGG	+	chr3_4:38542299-38542318	Msa0499580:CDS	30.0%
CATATGCTTCAATCTTTATC+AGG	+	chr3_4:38542455-38542474	Msa0499580:intron	30.0%
TTATCAGGTGGTTATTAATG+TGG	+	chr3_4:38542470-38542489	Msa0499580:intron	30.0%
TACAAAACAGCATAAGTGTT+TGG	+	chr3_4:38542846-38542865	Msa0499580:intron	30.0%
GGATAAGTAATAAACGTGAA+AGG	-	chr3_4:38543502-38543521	None:intergenic	30.0%
CTGTATCTTTCAAACCATAA+AGG	-	chr3_4:38543835-38543854	None:intergenic	30.0%
AGACTAATTACCAGTAGAAT+TGG	-	chr3_4:38543899-38543918	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	38541472	38544161	38541472	ID=Msa0499580;Name=Msa0499580
chr3_4	mRNA	38541472	38544161	38541472	ID=Msa0499580-mRNA-1;Parent=Msa0499580;Name=Msa0499580-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|382
chr3_4	exon	38541472	38542320	38541472	ID=Msa0499580-mRNA-1:exon:7953;Parent=Msa0499580-mRNA-1
chr3_4	exon	38542477	38542549	38542477	ID=Msa0499580-mRNA-1:exon:7954;Parent=Msa0499580-mRNA-1
chr3_4	exon	38543935	38544161	38543935	ID=Msa0499580-mRNA-1:exon:7955;Parent=Msa0499580-mRNA-1
chr3_4	CDS	38541472	38542320	38541472	ID=Msa0499580-mRNA-1:cds;Parent=Msa0499580-mRNA-1
chr3_4	CDS	38542477	38542549	38542477	ID=Msa0499580-mRNA-1:cds;Parent=Msa0499580-mRNA-1
chr3_4	CDS	38543935	38544161	38543935	ID=Msa0499580-mRNA-1:cds;Parent=Msa0499580-mRNA-1

Gene Sequence

>Msa0499580

ATGAACTTGGGAAAAAATGAATTTTCTGGAACCATACCAATCAAGATGTCACAATCCTTAAGAGTGGTCATATTGAGAGCCAACCAATTTGAAGGGAATATCCCACCACAACTATTTAAACTCTCTAATTTGTTTCACTTAGACCTTGCACATAACAAACTTTCAGGATCTTTGCCACATTGTGTCTACAACATGACTCAAATGGATACTGATCATGTGGGTGAATGGGATGATACCACCATTGATTTATTTACCAAAGGTCAAGATTATGTGTATCATGATAACGCGGATAGGCGAACTATCGATCTTTCAGTAAATCACTTGACTGGAGAAGTTCCATTGGAATTGTTTCGGCTAGTTCAAGTTCAAACCTTAAACTTATCTCATAATAACTTGAATGGAACAATACCAAGAGAGATTGGAGGCATGAAAAATATGGAATCTCTCGACCTCGCTAATAATAAGTTTTTTGGAGAAATTCCACAGAGCATGGCTCTCTTAAACTTTCTAGAGGTGTTGAATTTATCTTGCAATAATTTTGATGGAACAATCCCAACTGGAACACAACTTCAAAGTTTTAATGCATCGAGCTACATTGGCAATCCTAAACTATGCGGAGCTCCTCTTAATAATTGTACCATGAAAGAAGAAAATCCTAAAACTGCAACACCATCTACAGAGAATGAAGATGATGACTCTATCAAAGAATCATTGTATCTAGGCATGGGAGTTGGATTTGCAGTAGGTTTCTGGGGGATTTGTGGTTCTTTGTTGCTCATTAGGAAATGGAGGCATGCATACTTTCGGTTTATTAATAGAGTAGGTGACAAACTCAATGTAACTTTGATGGTGGTTATTAATGTGGAAGATCCTGCATTTTTATGCAAATCGTGGAAGGTTACGAGTTGTATGAGACGAGATTCAAATGATATGTATTCAGCAGGTTACATGATATGGGCCAATCACTTACTGATTCAAACTTTGGGGCTAGTAATGCTTAAGAATCTCTCGGCTTTTTTCCTTTTGATGTGCTGCCAATATCGCGTGTTTCTGTCAATTCCAGATGTTGTGGAGCGATGGGAGAGGAAGAGTAGAGGAGCTGATGGTGGGGTTGATTTGTCCGGGAAAAATGGAATCAGAGCTTACTGA

Protein sequence

>Msa0499580

MNLGKNEFSGTIPIKMSQSLRVVILRANQFEGNIPPQLFKLSNLFHLDLAHNKLSGSLPHCVYNMTQMDTDHVGEWDDTTIDLFTKGQDYVYHDNADRRTIDLSVNHLTGEVPLELFRLVQVQTLNLSHNNLNGTIPREIGGMKNMESLDLANNKFFGEIPQSMALLNFLEVLNLSCNNFDGTIPTGTQLQSFNASSYIGNPKLCGAPLNNCTMKEENPKTATPSTENEDDDSIKESLYLGMGVGFAVGFWGICGSLLLIRKWRHAYFRFINRVGDKLNVTLMVVINVEDPAFLCKSWKVTSCMRRDSNDMYSAGYMIWANHLLIQTLGLVMLKNLSAFFLLMCCQYRVFLSIPDVVERWERKSRGADGGVDLSGKNGIRAY*