AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470650 MtrunA17_Chr3g0125291 99.065 214 2 0 1 214 1 214 1.69e-162 446
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0470650 AT4G37925.1 57.820 211 81 4 1 208 1 206 7.62e-82 243

Find 67 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAAAAGCACTGGTTTC+TGG 0.141947 3_3:-72790739 None:intergenic
CTTGGTCTATTCTTACTTTC+AGG 0.183071 3_3:+72790834 Msa0470650:CDS
ACCATATGCATGGGTAAAAT+TGG 0.204397 3_3:+72790217 Msa0470650:five_prime_UTR
CCAAATTATCCATACAAAAT+TGG 0.229236 3_3:+72790449 Msa0470650:CDS
CATCAGTAGGATCAAGAATA+AGG 0.246691 3_3:-72790783 None:intergenic
AAGTACTTGTTGGCCATTAA+AGG 0.249101 3_3:+72790372 Msa0470650:five_prime_UTR
AAGATTTCTTACATAATAAC+TGG 0.309289 3_3:-72790293 None:intergenic
CAAGGCATGACCAGGGAATA+TGG 0.310643 3_3:+72790658 Msa0470650:CDS
AAGCAATATACAAGTTAATA+AGG 0.311095 3_3:+72790340 Msa0470650:five_prime_UTR
TAGACCAAGTTGCAAGTATC+AGG 0.336990 3_3:-72790820 None:intergenic
ACCTGAGGTTCAACTGGCCT+TGG 0.343629 3_3:-72790622 None:intergenic
TCTCAAGTACTAGCATCTTC+AGG 0.350319 3_3:-72791532 None:intergenic
GCATGGGTAAAATTGGAAAT+TGG 0.369967 3_3:+72790224 Msa0470650:five_prime_UTR
GAATACACACTTCGGTTGAT+TGG 0.380394 3_3:+72791382 Msa0470650:CDS
TGTGGCCATGTTTAATTTAG+TGG 0.390930 3_3:-72790404 None:intergenic
TTCTTACTTTCAGGAGCTTG+TGG 0.404103 3_3:+72790843 Msa0470650:CDS
ACAATCACCTGAGGTTCAAC+TGG 0.408756 3_3:-72790628 None:intergenic
TCAACAACAATCTGATGTTA+AGG 0.415802 3_3:+72790525 Msa0470650:CDS
ATAAGAAAGTTGTTATATGA+TGG 0.419220 3_3:+72791424 Msa0470650:CDS
TAGCTTCACTCCTTCTCCTA+TGG 0.430313 3_3:-72790318 None:intergenic
CGAAGTGTGTATTCATTCAA+TGG 0.452108 3_3:-72791373 None:intergenic
GGCCACAAGTTGTTCCTACA+TGG 0.484273 3_3:+72790420 Msa0470650:CDS
GCCCTCATGTAAGTACTTGT+TGG 0.487670 3_3:+72790362 Msa0470650:five_prime_UTR
CTGAGTTTGATCAAAAGCAC+TGG 0.490193 3_3:-72790746 None:intergenic
CTCATATTAAGCACTTGCAT+TGG 0.492935 3_3:-72791723 None:intergenic
CTCATAATAAACCATATGCA+TGG 0.496482 3_3:+72790207 Msa0470650:five_prime_UTR
ATCAGTAGGATCAAGAATAA+GGG 0.496505 3_3:-72790782 None:intergenic
CAGGTGATTGTAAAAGATCA+AGG 0.496992 3_3:+72790640 Msa0470650:CDS
TGTGGTCACAGAAGAAATAC+AGG 0.497348 3_3:-72790259 None:intergenic
AATCAACAAATTAATCCAAA+AGG 0.501012 3_3:+72790592 Msa0470650:CDS
ACCAAGGCCAGTTGAACCTC+AGG 0.504576 3_3:+72790621 Msa0470650:CDS
TAACTGGAGGGAAATGTTTG+TGG 0.515918 3_3:-72790277 None:intergenic
TAAAAGATCAAGGCATGACC+AGG 0.521510 3_3:+72790650 Msa0470650:CDS
TCAAGTATAATATGAATGCA+AGG 0.530324 3_3:+72791452 Msa0470650:CDS
GAAACAGACGGTGTGAAAGT+AGG 0.560812 3_3:+72790547 Msa0470650:CDS
CCACTGTCCTCCATATTCCC+TGG 0.567133 3_3:-72790668 None:intergenic
AGGGTTCTGAATTTCAGCAT+GGG 0.568039 3_3:+72791472 Msa0470650:CDS
CAAGTATAATATGAATGCAA+GGG 0.571561 3_3:+72791453 Msa0470650:CDS
TCATAATAAACCATATGCAT+GGG 0.572837 3_3:+72790208 Msa0470650:five_prime_UTR
GAAATCTTATCCATAGGAGA+AGG 0.573086 3_3:+72790308 Msa0470650:five_prime_UTR
ATCCTACTGATGAGTTTGTG+TGG 0.588183 3_3:+72790794 Msa0470650:CDS
TTATCCATACAAAATTGGAC+AGG 0.589821 3_3:+72790454 Msa0470650:CDS
ATGTAAGAAATCTTATCCAT+AGG 0.591103 3_3:+72790302 Msa0470650:five_prime_UTR
AAGGGTTCTGAATTTCAGCA+TGG 0.591866 3_3:+72791471 Msa0470650:CDS
GAATCCTGATACTTGCAACT+TGG 0.593694 3_3:+72790816 Msa0470650:CDS
GGAGCTTGTGGATCACTATG+AGG 0.594812 3_3:+72790855 Msa0470650:CDS
TCCATACAAAATTGGACAGG+AGG 0.595865 3_3:+72790457 Msa0470650:CDS
AAGTACTAGCATCTTCAGGT+TGG 0.600680 3_3:-72791528 None:intergenic
TTTCTTACATAATAACTGGA+GGG 0.602486 3_3:-72790289 None:intergenic
CATTGAATGAATACACACTT+CGG 0.613957 3_3:+72791374 Msa0470650:CDS
ATTTCTTACATAATAACTGG+AGG 0.614631 3_3:-72790290 None:intergenic
GGGTTCTGAATTTCAGCATG+GGG 0.628137 3_3:+72791473 Msa0470650:CDS
ATTTCAGCATGGGGAAGCCA+CGG 0.628788 3_3:+72791482 Msa0470650:CDS
GGCCAACAAGTACTTACATG+AGG 0.640965 3_3:-72790364 None:intergenic
TTCCACACAAACTCATCAGT+AGG 0.644633 3_3:-72790796 None:intergenic
AACCATGTAGGAACAACTTG+TGG 0.645922 3_3:-72790422 None:intergenic
GCCAACAAGTACTTACATGA+GGG 0.655783 3_3:-72790363 None:intergenic
AAACACCACTAAATTAAACA+TGG 0.656730 3_3:+72790399 Msa0470650:exon
TTGTTGTTGAACATGATCCG+TGG 0.663996 3_3:-72791499 None:intergenic
ATCCAAAAGGAACAAAACCA+AGG 0.667834 3_3:+72790605 Msa0470650:CDS
TAATTTGGTAGAAACCATGT+AGG 0.670055 3_3:-72790434 None:intergenic
ATAGATCCTCACATGTCGCG+TGG 0.684738 3_3:-72790701 None:intergenic
TCTGATGTTAAGGAAACAGA+CGG 0.690604 3_3:+72790535 Msa0470650:CDS
AAAAGATCAAGGCATGACCA+GGG 0.707335 3_3:+72790651 Msa0470650:CDS
CCAGGGAATATGGAGGACAG+TGG 0.721629 3_3:+72790668 Msa0470650:CDS
GCTGTGCCACGCGACATGTG+AGG 0.722585 3_3:+72790695 Msa0470650:CDS
GGCATGACCAGGGAATATGG+AGG 0.766490 3_3:+72790661 Msa0470650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATATTTGATTATGTTTA+AGG - chr3_3:72790887-72790906 None:intergenic 15.0%
!! ATATAATTCTAACACTTAAT+TGG - chr3_3:72791322-72791341 None:intergenic 15.0%
!! TGTATATTTGATTATGTTTA+AGG - chr3_3:72790887-72790906 None:intergenic 15.0%
!! ATATAATTCTAACACTTAAT+TGG - chr3_3:72791322-72791341 None:intergenic 15.0%
!! AAGATTTCTTACATAATAAC+TGG - chr3_3:72790296-72790315 None:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG + chr3_3:72790340-72790359 Msa0470650:five_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG + chr3_3:72790592-72790611 Msa0470650:CDS 20.0%
!! GCAAAAAAAATATCAATACA+AGG + chr3_3:72790994-72791013 Msa0470650:intron 20.0%
!!! CTAGTTAAAGATGAATTTTT+TGG + chr3_3:72791084-72791103 Msa0470650:intron 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + chr3_3:72791346-72791365 Msa0470650:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + chr3_3:72791424-72791443 Msa0470650:CDS 20.0%
!! AAGATTTCTTACATAATAAC+TGG - chr3_3:72790296-72790315 None:intergenic 20.0%
!! AAGCAATATACAAGTTAATA+AGG + chr3_3:72790340-72790359 Msa0470650:five_prime_UTR 20.0%
!! AATCAACAAATTAATCCAAA+AGG + chr3_3:72790592-72790611 Msa0470650:CDS 20.0%
!! GCAAAAAAAATATCAATACA+AGG + chr3_3:72790994-72791013 Msa0470650:intron 20.0%
!!! CTAGTTAAAGATGAATTTTT+TGG + chr3_3:72791084-72791103 Msa0470650:intron 20.0%
!!! CTTTTTGATAATTGAAAACA+GGG + chr3_3:72791346-72791365 Msa0470650:intron 20.0%
!! ATAAGAAAGTTGTTATATGA+TGG + chr3_3:72791424-72791443 Msa0470650:CDS 20.0%
! TCATAATAAACCATATGCAT+GGG + chr3_3:72790208-72790227 Msa0470650:five_prime_UTR 25.0%
! TTTCTTACATAATAACTGGA+GGG - chr3_3:72790292-72790311 None:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG - chr3_3:72790293-72790312 None:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG + chr3_3:72790302-72790321 Msa0470650:five_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG + chr3_3:72790399-72790418 Msa0470650:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG - chr3_3:72790452-72790471 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + chr3_3:72790449-72790468 Msa0470650:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - chr3_3:72790589-72790608 None:intergenic 25.0%
! ATAGTCTGTGCTTAAATTTA+AGG + chr3_3:72791024-72791043 Msa0470650:intron 25.0%
! AGTTGTTAATCTAAAAAGCT+AGG + chr3_3:72791251-72791270 Msa0470650:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - chr3_3:72791348-72791367 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + chr3_3:72791345-72791364 Msa0470650:intron 25.0%
! TCAAGTATAATATGAATGCA+AGG + chr3_3:72791452-72791471 Msa0470650:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + chr3_3:72791453-72791472 Msa0470650:CDS 25.0%
! TCATAATAAACCATATGCAT+GGG + chr3_3:72790208-72790227 Msa0470650:five_prime_UTR 25.0%
! TTTCTTACATAATAACTGGA+GGG - chr3_3:72790292-72790311 None:intergenic 25.0%
! ATTTCTTACATAATAACTGG+AGG - chr3_3:72790293-72790312 None:intergenic 25.0%
! ATGTAAGAAATCTTATCCAT+AGG + chr3_3:72790302-72790321 Msa0470650:five_prime_UTR 25.0%
! AAACACCACTAAATTAAACA+TGG + chr3_3:72790399-72790418 Msa0470650:exon 25.0%
!! CCAATTTTGTATGGATAATT+TGG - chr3_3:72790452-72790471 None:intergenic 25.0%
! CCAAATTATCCATACAAAAT+TGG + chr3_3:72790449-72790468 Msa0470650:CDS 25.0%
!!! GGATTAATTTGTTGATTTTG+TGG - chr3_3:72790589-72790608 None:intergenic 25.0%
! ATAGTCTGTGCTTAAATTTA+AGG + chr3_3:72791024-72791043 Msa0470650:intron 25.0%
! AGTTGTTAATCTAAAAAGCT+AGG + chr3_3:72791251-72791270 Msa0470650:intron 25.0%
!! CCTGTTTTCAATTATCAAAA+AGG - chr3_3:72791348-72791367 None:intergenic 25.0%
!!! CCTTTTTGATAATTGAAAAC+AGG + chr3_3:72791345-72791364 Msa0470650:intron 25.0%
! TCAAGTATAATATGAATGCA+AGG + chr3_3:72791452-72791471 Msa0470650:CDS 25.0%
! CAAGTATAATATGAATGCAA+GGG + chr3_3:72791453-72791472 Msa0470650:CDS 25.0%
CTCATAATAAACCATATGCA+TGG + chr3_3:72790207-72790226 Msa0470650:five_prime_UTR 30.0%
TAATTTGGTAGAAACCATGT+AGG - chr3_3:72790437-72790456 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + chr3_3:72790454-72790473 Msa0470650:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - chr3_3:72790511-72790530 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + chr3_3:72790525-72790544 Msa0470650:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - chr3_3:72790785-72790804 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - chr3_3:72790939-72790958 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + chr3_3:72790939-72790958 Msa0470650:intron 30.0%
TGTCTGAAAGGTAAATAAAG+TGG - chr3_3:72791154-72791173 None:intergenic 30.0%
TTTACCTTTCAGACAAACTT+CGG + chr3_3:72791159-72791178 Msa0470650:intron 30.0%
TAATCTAAAAAGCTAGGAGA+AGG + chr3_3:72791257-72791276 Msa0470650:intron 30.0%
CATTGAATGAATACACACTT+CGG + chr3_3:72791374-72791393 Msa0470650:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - chr3_3:72791576-72791595 None:intergenic 30.0%
CTCATAATAAACCATATGCA+TGG + chr3_3:72790207-72790226 Msa0470650:five_prime_UTR 30.0%
TAATTTGGTAGAAACCATGT+AGG - chr3_3:72790437-72790456 None:intergenic 30.0%
TTATCCATACAAAATTGGAC+AGG + chr3_3:72790454-72790473 Msa0470650:CDS 30.0%
TGTTGAGCTGATATGAAAAA+TGG - chr3_3:72790511-72790530 None:intergenic 30.0%
TCAACAACAATCTGATGTTA+AGG + chr3_3:72790525-72790544 Msa0470650:CDS 30.0%
ATCAGTAGGATCAAGAATAA+GGG - chr3_3:72790785-72790804 None:intergenic 30.0%
!! ACATGCTAGTCTTGAATTAT+AGG - chr3_3:72790939-72790958 None:intergenic 30.0%
ATAATTCAAGACTAGCATGT+AGG + chr3_3:72790939-72790958 Msa0470650:intron 30.0%
TGTCTGAAAGGTAAATAAAG+TGG - chr3_3:72791154-72791173 None:intergenic 30.0%
TTTACCTTTCAGACAAACTT+CGG + chr3_3:72791159-72791178 Msa0470650:intron 30.0%
TAATCTAAAAAGCTAGGAGA+AGG + chr3_3:72791257-72791276 Msa0470650:intron 30.0%
CATTGAATGAATACACACTT+CGG + chr3_3:72791374-72791393 Msa0470650:CDS 30.0%
!!! AATGATTTGCTCACTTTTCT+TGG - chr3_3:72791576-72791595 None:intergenic 30.0%
ACCATATGCATGGGTAAAAT+TGG + chr3_3:72790217-72790236 Msa0470650:five_prime_UTR 35.0%
! TCCAATTTTACCCATGCATA+TGG - chr3_3:72790221-72790240 None:intergenic 35.0%
GCATGGGTAAAATTGGAAAT+TGG + chr3_3:72790224-72790243 Msa0470650:five_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG + chr3_3:72790308-72790327 Msa0470650:five_prime_UTR 35.0%
! AAGTACTTGTTGGCCATTAA+AGG + chr3_3:72790372-72790391 Msa0470650:five_prime_UTR 35.0%
!!! GTGGTGTTTTTTGCCTTTAA+TGG - chr3_3:72790388-72790407 None:intergenic 35.0%
! TGTGGCCATGTTTAATTTAG+TGG - chr3_3:72790407-72790426 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG + chr3_3:72790535-72790554 Msa0470650:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + chr3_3:72790605-72790624 Msa0470650:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - chr3_3:72790640-72790659 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + chr3_3:72790640-72790659 Msa0470650:CDS 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + chr3_3:72790750-72790769 Msa0470650:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - chr3_3:72790786-72790805 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + chr3_3:72790834-72790853 Msa0470650:CDS 35.0%
! CTACATATTTTGCTAAGCAG+AGG - chr3_3:72790965-72790984 None:intergenic 35.0%
GAAATGATTGAGAGTTCAAG+TGG + chr3_3:72791051-72791070 Msa0470650:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - chr3_3:72791376-72791395 None:intergenic 35.0%
CCTCAAAAAACATCTGATCT+TGG - chr3_3:72791693-72791712 None:intergenic 35.0%
!!! CCAAGATCAGATGTTTTTTG+AGG + chr3_3:72791690-72791709 Msa0470650:three_prime_UTR 35.0%
CTCATATTAAGCACTTGCAT+TGG - chr3_3:72791726-72791745 None:intergenic 35.0%
ACCATATGCATGGGTAAAAT+TGG + chr3_3:72790217-72790236 Msa0470650:five_prime_UTR 35.0%
! TCCAATTTTACCCATGCATA+TGG - chr3_3:72790221-72790240 None:intergenic 35.0%
GCATGGGTAAAATTGGAAAT+TGG + chr3_3:72790224-72790243 Msa0470650:five_prime_UTR 35.0%
GAAATCTTATCCATAGGAGA+AGG + chr3_3:72790308-72790327 Msa0470650:five_prime_UTR 35.0%
! AAGTACTTGTTGGCCATTAA+AGG + chr3_3:72790372-72790391 Msa0470650:five_prime_UTR 35.0%
!!! GTGGTGTTTTTTGCCTTTAA+TGG - chr3_3:72790388-72790407 None:intergenic 35.0%
! TGTGGCCATGTTTAATTTAG+TGG - chr3_3:72790407-72790426 None:intergenic 35.0%
TCTGATGTTAAGGAAACAGA+CGG + chr3_3:72790535-72790554 Msa0470650:CDS 35.0%
ATCCAAAAGGAACAAAACCA+AGG + chr3_3:72790605-72790624 Msa0470650:CDS 35.0%
! TGATCTTTTACAATCACCTG+AGG - chr3_3:72790640-72790659 None:intergenic 35.0%
CAGGTGATTGTAAAAGATCA+AGG + chr3_3:72790640-72790659 Msa0470650:CDS 35.0%
! TGCTTTTGATCAAACTCAGA+TGG + chr3_3:72790750-72790769 Msa0470650:CDS 35.0%
CATCAGTAGGATCAAGAATA+AGG - chr3_3:72790786-72790805 None:intergenic 35.0%
CTTGGTCTATTCTTACTTTC+AGG + chr3_3:72790834-72790853 Msa0470650:CDS 35.0%
! CTACATATTTTGCTAAGCAG+AGG - chr3_3:72790965-72790984 None:intergenic 35.0%
GAAATGATTGAGAGTTCAAG+TGG + chr3_3:72791051-72791070 Msa0470650:intron 35.0%
CGAAGTGTGTATTCATTCAA+TGG - chr3_3:72791376-72791395 None:intergenic 35.0%
CCTCAAAAAACATCTGATCT+TGG - chr3_3:72791693-72791712 None:intergenic 35.0%
!!! CCAAGATCAGATGTTTTTTG+AGG + chr3_3:72791690-72791709 Msa0470650:three_prime_UTR 35.0%
CTCATATTAAGCACTTGCAT+TGG - chr3_3:72791726-72791745 None:intergenic 35.0%
TGTGGTCACAGAAGAAATAC+AGG - chr3_3:72790262-72790281 None:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG - chr3_3:72790280-72790299 None:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG - chr3_3:72790366-72790385 None:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG - chr3_3:72790425-72790444 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + chr3_3:72790457-72790476 Msa0470650:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - chr3_3:72790461-72790480 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + chr3_3:72790650-72790669 Msa0470650:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG + chr3_3:72790651-72790670 Msa0470650:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - chr3_3:72790742-72790761 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - chr3_3:72790749-72790768 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + chr3_3:72790794-72790813 Msa0470650:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - chr3_3:72790799-72790818 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + chr3_3:72790816-72790835 Msa0470650:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - chr3_3:72790823-72790842 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + chr3_3:72790843-72790862 Msa0470650:CDS 40.0%
GACTAAGAATTGTTCTCGTC+AGG - chr3_3:72791128-72791147 None:intergenic 40.0%
CAATCCGAAGTTTGTCTGAA+AGG - chr3_3:72791166-72791185 None:intergenic 40.0%
AGACAAACTTCGGATTGTCA+AGG + chr3_3:72791169-72791188 Msa0470650:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + chr3_3:72791382-72791401 Msa0470650:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + chr3_3:72791471-72791490 Msa0470650:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + chr3_3:72791472-72791491 Msa0470650:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - chr3_3:72791502-72791521 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - chr3_3:72791531-72791550 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - chr3_3:72791535-72791554 None:intergenic 40.0%
TGTGGTCACAGAAGAAATAC+AGG - chr3_3:72790262-72790281 None:intergenic 40.0%
TAACTGGAGGGAAATGTTTG+TGG - chr3_3:72790280-72790299 None:intergenic 40.0%
GCCAACAAGTACTTACATGA+GGG - chr3_3:72790366-72790385 None:intergenic 40.0%
AACCATGTAGGAACAACTTG+TGG - chr3_3:72790425-72790444 None:intergenic 40.0%
TCCATACAAAATTGGACAGG+AGG + chr3_3:72790457-72790476 Msa0470650:CDS 40.0%
! TCCTCCTGTCCAATTTTGTA+TGG - chr3_3:72790461-72790480 None:intergenic 40.0%
TAAAAGATCAAGGCATGACC+AGG + chr3_3:72790650-72790669 Msa0470650:CDS 40.0%
AAAAGATCAAGGCATGACCA+GGG + chr3_3:72790651-72790670 Msa0470650:CDS 40.0%
!! TGATCAAAAGCACTGGTTTC+TGG - chr3_3:72790742-72790761 None:intergenic 40.0%
! CTGAGTTTGATCAAAAGCAC+TGG - chr3_3:72790749-72790768 None:intergenic 40.0%
ATCCTACTGATGAGTTTGTG+TGG + chr3_3:72790794-72790813 Msa0470650:CDS 40.0%
TTCCACACAAACTCATCAGT+AGG - chr3_3:72790799-72790818 None:intergenic 40.0%
GAATCCTGATACTTGCAACT+TGG + chr3_3:72790816-72790835 Msa0470650:CDS 40.0%
TAGACCAAGTTGCAAGTATC+AGG - chr3_3:72790823-72790842 None:intergenic 40.0%
TTCTTACTTTCAGGAGCTTG+TGG + chr3_3:72790843-72790862 Msa0470650:CDS 40.0%
GACTAAGAATTGTTCTCGTC+AGG - chr3_3:72791128-72791147 None:intergenic 40.0%
CAATCCGAAGTTTGTCTGAA+AGG - chr3_3:72791166-72791185 None:intergenic 40.0%
AGACAAACTTCGGATTGTCA+AGG + chr3_3:72791169-72791188 Msa0470650:intron 40.0%
GAATACACACTTCGGTTGAT+TGG + chr3_3:72791382-72791401 Msa0470650:CDS 40.0%
!! AAGGGTTCTGAATTTCAGCA+TGG + chr3_3:72791471-72791490 Msa0470650:CDS 40.0%
!! AGGGTTCTGAATTTCAGCAT+GGG + chr3_3:72791472-72791491 Msa0470650:CDS 40.0%
! TTGTTGTTGAACATGATCCG+TGG - chr3_3:72791502-72791521 None:intergenic 40.0%
AAGTACTAGCATCTTCAGGT+TGG - chr3_3:72791531-72791550 None:intergenic 40.0%
TCTCAAGTACTAGCATCTTC+AGG - chr3_3:72791535-72791554 None:intergenic 40.0%
TAGCTTCACTCCTTCTCCTA+TGG - chr3_3:72790321-72790340 None:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG + chr3_3:72790362-72790381 Msa0470650:five_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG - chr3_3:72790367-72790386 None:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG + chr3_3:72790547-72790566 Msa0470650:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - chr3_3:72790610-72790629 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - chr3_3:72790631-72790650 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + chr3_3:72791473-72791492 Msa0470650:CDS 45.0%
TAGCTTCACTCCTTCTCCTA+TGG - chr3_3:72790321-72790340 None:intergenic 45.0%
GCCCTCATGTAAGTACTTGT+TGG + chr3_3:72790362-72790381 Msa0470650:five_prime_UTR 45.0%
GGCCAACAAGTACTTACATG+AGG - chr3_3:72790367-72790386 None:intergenic 45.0%
GAAACAGACGGTGTGAAAGT+AGG + chr3_3:72790547-72790566 Msa0470650:CDS 45.0%
!!! GGCCTTGGTTTTGTTCCTTT+TGG - chr3_3:72790610-72790629 None:intergenic 45.0%
ACAATCACCTGAGGTTCAAC+TGG - chr3_3:72790631-72790650 None:intergenic 45.0%
!! GGGTTCTGAATTTCAGCATG+GGG + chr3_3:72791473-72791492 Msa0470650:CDS 45.0%
GGCCACAAGTTGTTCCTACA+TGG + chr3_3:72790420-72790439 Msa0470650:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + chr3_3:72790658-72790677 Msa0470650:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG - chr3_3:72790704-72790723 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + chr3_3:72790855-72790874 Msa0470650:CDS 50.0%
AGGCTTCGTTACCCTGAAAG+CGG + chr3_3:72791189-72791208 Msa0470650:intron 50.0%
!! ACCCTGAAAGCGGATTGTCA+AGG + chr3_3:72791199-72791218 Msa0470650:intron 50.0%
GCCTTGACAATCCGCTTTCA+GGG - chr3_3:72791203-72791222 None:intergenic 50.0%
AGCCTTGACAATCCGCTTTC+AGG - chr3_3:72791204-72791223 None:intergenic 50.0%
ATTTCAGCATGGGGAAGCCA+CGG + chr3_3:72791482-72791501 Msa0470650:CDS 50.0%
GGCCACAAGTTGTTCCTACA+TGG + chr3_3:72790420-72790439 Msa0470650:CDS 50.0%
CAAGGCATGACCAGGGAATA+TGG + chr3_3:72790658-72790677 Msa0470650:CDS 50.0%
ATAGATCCTCACATGTCGCG+TGG - chr3_3:72790704-72790723 None:intergenic 50.0%
GGAGCTTGTGGATCACTATG+AGG + chr3_3:72790855-72790874 Msa0470650:CDS 50.0%
AGGCTTCGTTACCCTGAAAG+CGG + chr3_3:72791189-72791208 Msa0470650:intron 50.0%
!! ACCCTGAAAGCGGATTGTCA+AGG + chr3_3:72791199-72791218 Msa0470650:intron 50.0%
GCCTTGACAATCCGCTTTCA+GGG - chr3_3:72791203-72791222 None:intergenic 50.0%
AGCCTTGACAATCCGCTTTC+AGG - chr3_3:72791204-72791223 None:intergenic 50.0%
ATTTCAGCATGGGGAAGCCA+CGG + chr3_3:72791482-72791501 Msa0470650:CDS 50.0%
ACCAAGGCCAGTTGAACCTC+AGG + chr3_3:72790621-72790640 Msa0470650:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - chr3_3:72790625-72790644 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + chr3_3:72790661-72790680 Msa0470650:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG - chr3_3:72790671-72790690 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + chr3_3:72790668-72790687 Msa0470650:CDS 55.0%
ACCAAGGCCAGTTGAACCTC+AGG + chr3_3:72790621-72790640 Msa0470650:CDS 55.0%
! ACCTGAGGTTCAACTGGCCT+TGG - chr3_3:72790625-72790644 None:intergenic 55.0%
GGCATGACCAGGGAATATGG+AGG + chr3_3:72790661-72790680 Msa0470650:CDS 55.0%
CCACTGTCCTCCATATTCCC+TGG - chr3_3:72790671-72790690 None:intergenic 55.0%
CCAGGGAATATGGAGGACAG+TGG + chr3_3:72790668-72790687 Msa0470650:CDS 55.0%
GCTGTGCCACGCGACATGTG+AGG + chr3_3:72790695-72790714 Msa0470650:CDS 65.0%
GCTGTGCCACGCGACATGTG+AGG + chr3_3:72790695-72790714 Msa0470650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72790182 72791787 72790182 ID=Msa0470650;Name=Msa0470650
chr3_3 mRNA 72790182 72791787 72790182 ID=Msa0470650-mRNA-1;Parent=Msa0470650;Name=Msa0470650-mRNA-1;_AED=0.39;_eAED=0.39;_QI=236|1|1|1|1|1|2|235|214
chr3_3 exon 72790182 72790876 72790182 ID=Msa0470650-mRNA-1:exon:18350;Parent=Msa0470650-mRNA-1
chr3_3 exon 72791367 72791787 72791367 ID=Msa0470650-mRNA-1:exon:18351;Parent=Msa0470650-mRNA-1
chr3_3 five_prime_UTR 72790182 72790417 72790182 ID=Msa0470650-mRNA-1:five_prime_utr;Parent=Msa0470650-mRNA-1
chr3_3 CDS 72790418 72790876 72790418 ID=Msa0470650-mRNA-1:cds;Parent=Msa0470650-mRNA-1
chr3_3 CDS 72791367 72791552 72791367 ID=Msa0470650-mRNA-1:cds;Parent=Msa0470650-mRNA-1
chr3_3 three_prime_UTR 72791553 72791787 72791553 ID=Msa0470650-mRNA-1:three_prime_utr;Parent=Msa0470650-mRNA-1
Gene Sequence

>Msa0470650

ATGGCCACAAGTTGTTCCTACATGGTTTCTACCAAATTATCCATACAAAATTGGACAGGAGGAAGAAGAAAAGAAGTAAGAAACAGAACTCCATTTTTCATATCAGCTCAACAACAATCTGATGTTAAGGAAACAGACGGTGTGAAAGTAGGAGAAGAGAAAGAAATACCACAAAATCAACAAATTAATCCAAAAGGAACAAAACCAAGGCCAGTTGAACCTCAGGTGATTGTAAAAGATCAAGGCATGACCAGGGAATATGGAGGACAGTGGTTGAGCTGTGCCACGCGACATGTGAGGATCTATGCAGCTTATATTGATCCAGAAACCAGTGCTTTTGATCAAACTCAGATGGATAAACTCACCCTTATTCTTGATCCTACTGATGAGTTTGTGTGGAATCCTGATACTTGCAACTTGGTCTATTCTTACTTTCAGGAGCTTGTGGATCACTATGAGGGTGCTCCATTGAATGAATACACACTTCGGTTGATTGGTTCAGACATAGAGCATTATATAAGAAAGTTGTTATATGATGGAGTAATCAAGTATAATATGAATGCAAGGGTTCTGAATTTCAGCATGGGGAAGCCACGGATCATGTTCAACAACAATGATATCCAACCTGAAGATGCTAGTACTTGA

Protein sequence

>Msa0470650

MATSCSYMVSTKLSIQNWTGGRRKEVRNRTPFFISAQQQSDVKETDGVKVGEEKEIPQNQQINPKGTKPRPVEPQVIVKDQGMTREYGGQWLSCATRHVRIYAAYIDPETSAFDQTQMDKLTLILDPTDEFVWNPDTCNLVYSYFQELVDHYEGAPLNEYTLRLIGSDIEHYIRKLLYDGVIKYNMNARVLNFSMGKPRIMFNNNDIQPEDAST*