Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510040 | XP_013460839.1 | 98.938 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510040 | sp|Q9FEP7|SUT13_ARATH | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510040 | A0A072V0K2 | 98.938 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0102130 | Msa0510040 | 0.805521 | 1.282352e-49 | -8.615850e-47 |
| Msa0191630 | Msa0510040 | 0.831573 | 1.546586e-55 | -8.615850e-47 |
| Msa0223290 | Msa0510040 | 0.808370 | 3.202881e-50 | -8.615850e-47 |
| Msa0223380 | Msa0510040 | 0.828547 | 8.459582e-55 | -8.615850e-47 |
| Msa0225470 | Msa0510040 | 0.809655 | 1.699805e-50 | -8.615850e-47 |
| Msa0233610 | Msa0510040 | 0.812589 | 3.929653e-51 | -8.615850e-47 |
| Msa0365490 | Msa0510040 | 0.811468 | 6.896212e-51 | -8.615850e-47 |
| Msa0370430 | Msa0510040 | 0.944654 | 1.311158e-103 | -8.615850e-47 |
| Msa0379550 | Msa0510040 | 0.837068 | 6.463754e-57 | -8.615850e-47 |
| Msa0389810 | Msa0510040 | 0.836691 | 8.066179e-57 | -8.615850e-47 |
| Msa0404220 | Msa0510040 | 0.815343 | 9.704314e-52 | -8.615850e-47 |
| Msa0404230 | Msa0510040 | 0.863391 | 2.574222e-64 | -8.615850e-47 |
| Msa0404700 | Msa0510040 | 0.804751 | 1.858424e-49 | -8.615850e-47 |
| Msa0417920 | Msa0510040 | 0.854282 | 1.365337e-61 | -8.615850e-47 |
| Msa0464420 | Msa0510040 | 0.971215 | 8.162139e-133 | -8.615850e-47 |
| Msa0464900 | Msa0510040 | 0.827605 | 1.426305e-54 | -8.615850e-47 |
| Msa0468130 | Msa0510040 | 0.839714 | 1.343100e-57 | -8.615850e-47 |
| Msa0473240 | Msa0510040 | 0.803439 | 3.483579e-49 | -8.615850e-47 |
| Msa0475410 | Msa0510040 | 0.850143 | 2.054876e-60 | -8.615850e-47 |
| Msa0271580 | Msa0510040 | 0.802716 | 4.917460e-49 | -8.615850e-47 |
| Msa0288320 | Msa0510040 | 0.801723 | 7.868734e-49 | -8.615850e-47 |
| Msa0363100 | Msa0510040 | 0.802683 | 4.994268e-49 | -8.615850e-47 |
| Msa0363170 | Msa0510040 | 0.825888 | 3.667254e-54 | -8.615850e-47 |
| Msa0489610 | Msa0510040 | 0.811706 | 6.122390e-51 | -8.615850e-47 |
| Msa0491520 | Msa0510040 | 0.809598 | 1.747835e-50 | -8.615850e-47 |
| Msa0510040 | Msa0591710 | 0.817322 | 3.502261e-52 | -8.615850e-47 |
| Msa0510040 | Msa0608710 | 0.811206 | 7.861913e-51 | -8.615850e-47 |
| Msa0510040 | Msa0615340 | 0.812846 | 3.452238e-51 | -8.615850e-47 |
| Msa0510040 | Msa0622340 | 0.808207 | 3.468768e-50 | -8.615850e-47 |
| Msa0510040 | Msa0694250 | 0.805941 | 1.046777e-49 | -8.615850e-47 |
| Msa0510040 | Msa0714960 | 0.800739 | 1.251363e-48 | -8.615850e-47 |
| Msa0510040 | Msa0715110 | 0.815690 | 8.123689e-52 | -8.615850e-47 |
| Msa0510040 | Msa0724560 | 0.803604 | 3.220662e-49 | -8.615850e-47 |
| Msa0510040 | Msa0731180 | 0.809808 | 1.575817e-50 | -8.615850e-47 |
| Msa0510040 | Msa0757050 | 0.818230 | 2.185117e-52 | -8.615850e-47 |
| Msa0510040 | Msa0757080 | 0.809935 | 1.479821e-50 | -8.615850e-47 |
| Msa0510040 | Msa0827470 | 0.804274 | 2.336832e-49 | -8.615850e-47 |
| Msa0510040 | Msa0908170 | 0.822773 | 1.979772e-53 | -8.615850e-47 |
| Msa0510040 | Msa0982270 | 0.832433 | 9.477273e-56 | -8.615850e-47 |
| Msa0510040 | Msa0982590 | 0.811499 | 6.789312e-51 | -8.615850e-47 |
| Msa0510040 | Msa1052140 | 0.832868 | 7.392156e-56 | -8.615850e-47 |
| Msa0510040 | Msa1092090 | 0.818083 | 2.358143e-52 | -8.615850e-47 |
| Msa0510040 | Msa1160580 | 0.805632 | 1.215515e-49 | -8.615850e-47 |
| Msa0510040 | Msa1174310 | 0.812004 | 5.271451e-51 | -8.615850e-47 |
| Msa0510040 | Msa1218650 | 0.807484 | 4.941795e-50 | -8.615850e-47 |
| Msa0510040 | Msa1229850 | 0.807734 | 4.374583e-50 | -8.615850e-47 |
| Msa0510040 | Msa1233500 | 0.808361 | 3.215744e-50 | -8.615850e-47 |
| Msa0510040 | Msa1235020 | 0.804186 | 2.438038e-49 | -8.615850e-47 |
| Msa0510040 | Msa1235400 | 0.804580 | 2.017891e-49 | -8.615850e-47 |
| Msa0510040 | Msa1246660 | 0.814894 | 1.221216e-51 | -8.615850e-47 |
| Msa0510040 | Msa1272520 | 0.804057 | 2.593266e-49 | -8.615850e-47 |
| Msa0510040 | Msa1276510 | 0.802459 | 5.554556e-49 | -8.615850e-47 |
| Msa0510040 | Msa1287680 | 0.806869 | 6.672228e-50 | -8.615850e-47 |
| Msa0510040 | Msa1306750 | 0.804027 | 2.630600e-49 | -8.615850e-47 |
| Msa0510040 | Msa1307740 | 0.844493 | 7.309015e-59 | -8.615850e-47 |
| Msa0510040 | Msa1314770 | 0.820884 | 5.418642e-53 | -8.615850e-47 |
| Msa0510040 | Msa1419110 | 0.809919 | 1.491537e-50 | -8.615850e-47 |
| Msa0510040 | Msa1439230 | 0.807516 | 4.866353e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510040 | MtrunA17_Chr3g0115481 | 98.938 | 659 | 7 | 0 | 1 | 659 | 1 | 659 | 0.0 | 1333 |
| Msa0510040 | MtrunA17_Chr5g0425251 | 84.018 | 657 | 102 | 2 | 4 | 659 | 1 | 655 | 0.0 | 1136 |
| Msa0510040 | MtrunA17_Chr2g0278931 | 70.128 | 626 | 183 | 3 | 30 | 654 | 32 | 654 | 0.0 | 901 |
| Msa0510040 | MtrunA17_Chr1g0185231 | 53.096 | 646 | 291 | 4 | 23 | 659 | 3 | 645 | 0.0 | 696 |
| Msa0510040 | MtrunA17_Chr7g0260181 | 52.335 | 621 | 292 | 3 | 33 | 652 | 18 | 635 | 0.0 | 694 |
| Msa0510040 | MtrunA17_Chr2g0331951 | 53.344 | 628 | 289 | 3 | 33 | 659 | 23 | 647 | 0.0 | 694 |
| Msa0510040 | MtrunA17_Chr4g0043931 | 51.411 | 638 | 304 | 5 | 17 | 652 | 1 | 634 | 0.0 | 683 |
| Msa0510040 | MtrunA17_Chr3g0124381 | 53.704 | 648 | 278 | 9 | 11 | 651 | 17 | 649 | 0.0 | 679 |
| Msa0510040 | MtrunA17_Chr5g0425241 | 54.327 | 624 | 269 | 6 | 38 | 651 | 29 | 646 | 0.0 | 678 |
| Msa0510040 | MtrunA17_Chr4g0004261 | 51.823 | 631 | 294 | 4 | 33 | 659 | 30 | 654 | 0.0 | 675 |
| Msa0510040 | MtrunA17_Chr3g0115461 | 51.314 | 647 | 290 | 5 | 13 | 651 | 23 | 652 | 0.0 | 664 |
| Msa0510040 | MtrunA17_Chr4g0043951 | 51.537 | 553 | 261 | 3 | 9 | 561 | 2 | 547 | 0.0 | 591 |
| Msa0510040 | MtrunA17_Chr6g0485191 | 43.680 | 625 | 345 | 4 | 28 | 651 | 58 | 676 | 0.0 | 573 |
| Msa0510040 | MtrunA17_Chr3g0124371 | 41.014 | 651 | 356 | 9 | 9 | 648 | 16 | 649 | 1.46e-173 | 510 |
| Msa0510040 | MtrunA17_Chr7g0222631 | 39.446 | 578 | 336 | 7 | 77 | 651 | 70 | 636 | 1.29e-137 | 419 |
| Msa0510040 | MtrunA17_Chr1g0173031 | 51.818 | 220 | 101 | 2 | 33 | 252 | 30 | 244 | 2.20e-68 | 227 |
| Msa0510040 | MtrunA17_Chr1g0173031 | 56.250 | 96 | 42 | 0 | 319 | 414 | 250 | 345 | 1.52e-31 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510040 | AT1G22150.1 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| Msa0510040 | AT1G22150.3 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| Msa0510040 | AT1G22150.4 | 75.915 | 656 | 153 | 4 | 1 | 655 | 1 | 652 | 0.0 | 983 |
| Msa0510040 | AT1G78000.2 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| Msa0510040 | AT1G78000.1 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| Msa0510040 | AT1G78000.3 | 77.352 | 627 | 139 | 2 | 30 | 655 | 25 | 649 | 0.0 | 947 |
| Msa0510040 | AT4G08620.1 | 71.589 | 623 | 174 | 2 | 34 | 655 | 24 | 644 | 0.0 | 910 |
| Msa0510040 | AT1G78000.5 | 78.462 | 585 | 123 | 2 | 30 | 613 | 25 | 607 | 0.0 | 892 |
| Msa0510040 | AT1G22150.2 | 77.002 | 587 | 130 | 4 | 1 | 586 | 1 | 583 | 0.0 | 884 |
| Msa0510040 | AT1G78000.4 | 78.853 | 558 | 115 | 2 | 30 | 586 | 25 | 580 | 0.0 | 848 |
| Msa0510040 | AT1G78000.6 | 78.481 | 474 | 100 | 1 | 29 | 502 | 24 | 495 | 0.0 | 712 |
| Msa0510040 | AT3G51895.2 | 53.215 | 622 | 286 | 4 | 33 | 652 | 65 | 683 | 0.0 | 704 |
| Msa0510040 | AT3G51895.1 | 53.215 | 622 | 286 | 4 | 33 | 652 | 20 | 638 | 0.0 | 702 |
| Msa0510040 | AT3G15990.1 | 51.675 | 627 | 299 | 3 | 33 | 658 | 27 | 650 | 0.0 | 687 |
| Msa0510040 | AT1G78000.7 | 80.984 | 447 | 82 | 2 | 141 | 586 | 1 | 445 | 0.0 | 673 |
| Msa0510040 | AT5G10180.1 | 53.333 | 630 | 284 | 6 | 27 | 651 | 48 | 672 | 0.0 | 660 |
| Msa0510040 | AT1G23090.1 | 50.641 | 624 | 303 | 4 | 33 | 654 | 4 | 624 | 0.0 | 657 |
| Msa0510040 | AT4G02700.1 | 49.114 | 621 | 311 | 4 | 33 | 651 | 10 | 627 | 0.0 | 627 |
| Msa0510040 | AT1G77990.1 | 48.476 | 656 | 323 | 6 | 6 | 648 | 10 | 663 | 0.0 | 620 |
| Msa0510040 | AT5G19600.1 | 42.543 | 637 | 347 | 7 | 19 | 651 | 2 | 623 | 0.0 | 537 |
| Msa0510040 | AT1G23090.2 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 4.06e-174 | 506 |
| Msa0510040 | AT1G23090.3 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 4.06e-174 | 506 |
| Msa0510040 | AT1G23090.4 | 49.899 | 495 | 243 | 4 | 162 | 654 | 1 | 492 | 4.06e-174 | 506 |
| Msa0510040 | AT3G12520.2 | 38.581 | 578 | 341 | 7 | 77 | 651 | 47 | 613 | 1.29e-132 | 405 |
| Msa0510040 | AT3G12520.1 | 38.581 | 578 | 341 | 7 | 77 | 651 | 63 | 629 | 1.73e-132 | 405 |
| Msa0510040 | AT5G13550.1 | 37.688 | 597 | 358 | 7 | 58 | 651 | 57 | 642 | 1.93e-129 | 397 |
| Msa0510040 | AT3G12520.3 | 39.463 | 484 | 281 | 6 | 77 | 559 | 63 | 535 | 4.40e-112 | 348 |
Find 155 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCCAAGAACTGCTATTT+TGG | 0.159336 | 3_4:+58767870 | Msa0510040:CDS |
| CAAACTTTACACATCAAATT+TGG | 0.194351 | 3_4:+58768554 | Msa0510040:CDS |
| TTAATGTCATACAATAAATT+TGG | 0.204828 | 3_4:-58766314 | None:intergenic |
| GTGTTGGCAATTCTTGTTAA+AGG | 0.231722 | 3_4:+58769151 | Msa0510040:three_prime_UTR |
| CTTGTTTGAGCAGCTTGTTC+TGG | 0.232734 | 3_4:+58768506 | Msa0510040:intron |
| GCTTGCATGGGAGCATTCTT+TGG | 0.233187 | 3_4:+58767414 | Msa0510040:CDS |
| TCAAATTTGGCTAACATAAT+TGG | 0.235564 | 3_4:+58768567 | Msa0510040:CDS |
| TCATATTCCCTATACTTAAC+TGG | 0.244415 | 3_4:+58765225 | Msa0510040:CDS |
| CTTGCATGGGAGCATTCTTT+GGG | 0.248132 | 3_4:+58767415 | Msa0510040:CDS |
| CAAGAATTGCCAACACTAAA+TGG | 0.257169 | 3_4:-58769144 | None:intergenic |
| GTATTTGTAACATTGTATTA+AGG | 0.266288 | 3_4:+58769022 | Msa0510040:three_prime_UTR |
| GGCAGTGGTTTCTCTCTTGT+TGG | 0.266819 | 3_4:+58765629 | Msa0510040:CDS |
| TATCCCTCTCATTTCATTAG+AGG | 0.280277 | 3_4:+58769075 | Msa0510040:three_prime_UTR |
| TTCCCCAAAATAGCAGTTCT+TGG | 0.283487 | 3_4:-58767874 | None:intergenic |
| AAAATAAATGTTAGGATATA+AGG | 0.284791 | 3_4:-58764649 | None:intergenic |
| ATTCAGTTAAGAGAGAAAAT+TGG | 0.288016 | 3_4:+58768666 | Msa0510040:three_prime_UTR |
| TCCTTGAATAAGTTCTGTTT+TGG | 0.295462 | 3_4:-58765104 | None:intergenic |
| CTCTATGTAGGATCTACTTT+TGG | 0.298269 | 3_4:+58764483 | Msa0510040:five_prime_UTR |
| AACTTCTTTCCTGCTCAATA+AGG | 0.300421 | 3_4:+58764393 | None:intergenic |
| ACCACTTATTTATGCTTTCA+TGG | 0.312166 | 3_4:+58765575 | Msa0510040:CDS |
| TATTCTTCTGCATGCGTAAC+AGG | 0.316301 | 3_4:-58765678 | None:intergenic |
| GCAGTGGTTTCTCTCTTGTT+GGG | 0.317370 | 3_4:+58765630 | Msa0510040:CDS |
| CCCTTTCAGGTTCTTTCTCT+CGG | 0.326604 | 3_4:+58767181 | Msa0510040:intron |
| CATCAGTCTTGTGGACTATC+AGG | 0.327508 | 3_4:+58767350 | Msa0510040:CDS |
| TTGGCCTTGTCACTTGTAAT+AGG | 0.331619 | 3_4:-58767855 | None:intergenic |
| CTATCCCATGCTGCTATTGT+CGG | 0.334142 | 3_4:+58765922 | Msa0510040:CDS |
| ACCATTCAAATCTTCTGTTC+AGG | 0.339033 | 3_4:+58764436 | Msa0510040:five_prime_UTR |
| ATACTCTAAGCTTGCACATT+TGG | 0.342714 | 3_4:+58765425 | Msa0510040:CDS |
| TACTAGCTTCTGTGTATTGT+TGG | 0.347401 | 3_4:-58767927 | None:intergenic |
| CATGGGTTCACATCTAGCTT+TGG | 0.355433 | 3_4:-58768639 | None:intergenic |
| GATATCAATGGGGCAATTGC+TGG | 0.356023 | 3_4:-58766451 | None:intergenic |
| GTACCTTTCTTTAACATAGT+TGG | 0.358549 | 3_4:-58768004 | None:intergenic |
| AGAAGAACAAGAAATTCTTC+TGG | 0.361674 | 3_4:+58766425 | Msa0510040:CDS |
| GTCCTCCTCGTTTATATAGT+TGG | 0.372121 | 3_4:-58764674 | None:intergenic |
| ATGAAGGATTATCAATTAGA+TGG | 0.377902 | 3_4:+58766894 | Msa0510040:CDS |
| TGGTCTTTGAAAGATCTTAG+AGG | 0.380869 | 3_4:-58765167 | None:intergenic |
| GCACATTTGGCACCACAGTA+TGG | 0.381293 | 3_4:+58765438 | Msa0510040:CDS |
| AATTTCCCCACCTTAGGATA+AGG | 0.382315 | 3_4:-58768861 | None:intergenic |
| GCACCCGTGTTAGCTTTCTA+TGG | 0.382400 | 3_4:-58768981 | None:intergenic |
| TGTTGGCAATTCTTGTTAAA+GGG | 0.387637 | 3_4:+58769152 | Msa0510040:three_prime_UTR |
| ATTGCAACTTTGTAAGCATA+TGG | 0.407177 | 3_4:-58765077 | None:intergenic |
| CAGCTTGTTCTGGCAAATCC+TGG | 0.413117 | 3_4:+58768516 | Msa0510040:intron |
| TTCTGCTGTCATCAGTCTTG+TGG | 0.413682 | 3_4:+58767341 | Msa0510040:CDS |
| TCCAAAACAGAACTTATTCA+AGG | 0.417587 | 3_4:+58765103 | Msa0510040:CDS |
| TGATATTATCTCCGTGTTGA+AGG | 0.418696 | 3_4:+58766032 | Msa0510040:CDS |
| AACTGGCAAACTATATTAAT+CGG | 0.422167 | 3_4:+58766262 | Msa0510040:CDS |
| TTTAAAATTGGCGTCATGGC+AGG | 0.425028 | 3_4:+58766728 | Msa0510040:CDS |
| CACCTTAGGATAAGGATCTC+TGG | 0.425887 | 3_4:-58768853 | None:intergenic |
| TAATTTAATTTCCCCACCTT+AGG | 0.426744 | 3_4:-58768867 | None:intergenic |
| ACAGAAGCTAGTAAGGTTCC+AGG | 0.431458 | 3_4:+58767937 | Msa0510040:CDS |
| GAGATAGCATACTCCATGTT+TGG | 0.433528 | 3_4:-58766070 | None:intergenic |
| AGTTGGATAAAATAAATGTT+AGG | 0.436621 | 3_4:-58764657 | None:intergenic |
| TTCTATGACTTCTTGTTATG+TGG | 0.437463 | 3_4:+58766959 | Msa0510040:CDS |
| TAAATTTCATGAACAGATGA+AGG | 0.439342 | 3_4:-58766677 | None:intergenic |
| ACAATACAACTGATATCAAT+GGG | 0.439415 | 3_4:-58766462 | None:intergenic |
| CAACAGCTAAAGGGTTTCCT+TGG | 0.439994 | 3_4:+58765979 | Msa0510040:CDS |
| GGGATTACACAAGCAACTCT+TGG | 0.440824 | 3_4:+58765735 | Msa0510040:CDS |
| AATTGCCCTTCAACAGCTAA+AGG | 0.441884 | 3_4:+58765969 | Msa0510040:CDS |
| CTAACAAAAGTTAGTAGAAA+GGG | 0.442917 | 3_4:+58768814 | Msa0510040:three_prime_UTR |
| GAAGAACAAGAAATTCTTCT+GGG | 0.444848 | 3_4:+58766426 | Msa0510040:CDS |
| AAGAACATTTGCATCTATGA+AGG | 0.450445 | 3_4:+58766878 | Msa0510040:CDS |
| GGAAACCCTTTAGCTGTTGA+AGG | 0.451418 | 3_4:-58765975 | None:intergenic |
| CCTATATAATAACAGATTGA+AGG | 0.451524 | 3_4:+58764958 | Msa0510040:intron |
| TTCTTTAACATAGTTGGAGT+TGG | 0.452253 | 3_4:-58767998 | None:intergenic |
| AATGATGATGGCGGCGAGAA+TGG | 0.456380 | 3_4:-58767319 | None:intergenic |
| TTTGGCTAACATAATTGGTC+AGG | 0.456815 | 3_4:+58768572 | Msa0510040:CDS |
| ATTGCCCTTCAACAGCTAAA+GGG | 0.458365 | 3_4:+58765970 | Msa0510040:CDS |
| TGCAAGTCTTTGCATACCTC+AGG | 0.461632 | 3_4:+58765304 | Msa0510040:CDS |
| CAGTGGTTTCTCTCTTGTTG+GGG | 0.462873 | 3_4:+58765631 | Msa0510040:CDS |
| TTATTGTGTGTGTGCACAAC+TGG | 0.463736 | 3_4:-58768917 | None:intergenic |
| AAGGTAAATCACATAGAGAA+AGG | 0.464306 | 3_4:+58766647 | Msa0510040:intron |
| ATGGCGGCGAGAATGGCATT+TGG | 0.465915 | 3_4:-58767312 | None:intergenic |
| ACAATACACAGAAGCTAGTA+AGG | 0.466966 | 3_4:+58767930 | Msa0510040:CDS |
| ACTTCTTGTTATGTGGCAAC+TGG | 0.469483 | 3_4:+58766966 | Msa0510040:CDS |
| AGTTCTCGCGATATAGCAAT+AGG | 0.473447 | 3_4:+58765600 | Msa0510040:CDS |
| TTTCTTGCAGAATATTAAGA+TGG | 0.474803 | 3_4:+58768100 | Msa0510040:intron |
| CGACAATAGCAGCATGGGAT+AGG | 0.479296 | 3_4:-58765921 | None:intergenic |
| CAATATTAGAGACTGCAGTT+TGG | 0.479467 | 3_4:-58767230 | None:intergenic |
| TTAAACAAAATTCTCTATGT+AGG | 0.482696 | 3_4:+58764471 | Msa0510040:five_prime_UTR |
| ACTAACAAAAGTTAGTAGAA+AGG | 0.488351 | 3_4:+58768813 | Msa0510040:three_prime_UTR |
| GGATTACACAAGCAACTCTT+GGG | 0.490943 | 3_4:+58765736 | Msa0510040:CDS |
| ATTAGATGGAAACAGAGAAA+TGG | 0.491879 | 3_4:+58766908 | Msa0510040:CDS |
| CATATTCCCTATACTTAACT+GGG | 0.493178 | 3_4:+58765226 | Msa0510040:CDS |
| TTGTCTGTATCTTTATCAGT+TGG | 0.493507 | 3_4:-58765008 | None:intergenic |
| TTATCAGTTGGAGAATCCAT+TGG | 0.494298 | 3_4:-58764996 | None:intergenic |
| GACAATACAACTGATATCAA+TGG | 0.494922 | 3_4:-58766463 | None:intergenic |
| TTGTCTGTCACTGCTGAACC+AGG | 0.503392 | 3_4:-58768534 | None:intergenic |
| CCACTTATTTATGCTTTCAT+GGG | 0.515118 | 3_4:+58765576 | Msa0510040:CDS |
| GTCAAATATTTGATCAGTGT+CGG | 0.515881 | 3_4:+58764581 | Msa0510040:five_prime_UTR |
| GGAATGCGAGAATGATGAAA+TGG | 0.518668 | 3_4:+58768687 | Msa0510040:three_prime_UTR |
| CTCCAGAGATCCTTATCCTA+AGG | 0.518703 | 3_4:+58768851 | Msa0510040:three_prime_UTR |
| TTGTAACATTGTATTAAGGA+TGG | 0.520002 | 3_4:+58769026 | Msa0510040:three_prime_UTR |
| TCAGCAATGCCTTATTGAGC+AGG | 0.524947 | 3_4:-58764402 | None:intergenic |
| CAGAGATCCTTATCCTAAGG+TGG | 0.526449 | 3_4:+58768854 | Msa0510040:three_prime_UTR |
| CAGAAGATTTGAATGGTCAC+TGG | 0.526466 | 3_4:-58764430 | None:intergenic |
| TAGATGATAGCAAAGTCAAA+AGG | 0.527351 | 3_4:+58768742 | Msa0510040:three_prime_UTR |
| AAATGTTCTTCCAATAGCTA+TGG | 0.529144 | 3_4:-58766865 | None:intergenic |
| ACTCCAACTATGTTAAAGAA+AGG | 0.531555 | 3_4:+58768001 | Msa0510040:CDS |
| GGCAGGCATGATTGCACTGA+CGG | 0.532067 | 3_4:+58766745 | Msa0510040:CDS |
| AACAGAGAAATGGTAGCGTT+AGG | 0.534101 | 3_4:+58766918 | Msa0510040:CDS |
| TATGTAACTCTTCAAAGGCA+TGG | 0.541754 | 3_4:-58768316 | None:intergenic |
| AAGAGAGAAACCACTGCCAC+TGG | 0.543890 | 3_4:-58765624 | None:intergenic |
| AGCAATAGGACCAGTGGCAG+TGG | 0.545673 | 3_4:+58765614 | Msa0510040:CDS |
| TTTCAAATATCTAAGTACGT+TGG | 0.545811 | 3_4:-58764521 | None:intergenic |
| TTTAGGGGAGATATAATAGC+TGG | 0.546068 | 3_4:+58765272 | Msa0510040:CDS |
| TTCAGGTTCTTTCTCTCGGT+CGG | 0.546094 | 3_4:+58767185 | Msa0510040:intron |
| CCCATGAAAGCATAAATAAG+TGG | 0.547324 | 3_4:-58765576 | None:intergenic |
| AGGTTCTTTCTCTCGGTCGG+CGG | 0.551736 | 3_4:+58767188 | Msa0510040:intron |
| TCGGCGGTAAATTACATGGC+TGG | 0.554084 | 3_4:+58767204 | Msa0510040:CDS |
| CAGAATATTAAGATGGCTAA+CGG | 0.557714 | 3_4:+58768107 | Msa0510040:intron |
| AGGTAAATCACATAGAGAAA+GGG | 0.560126 | 3_4:+58766648 | Msa0510040:intron |
| GTCACTGTTGATGTCTCCAA+TGG | 0.566938 | 3_4:+58764980 | Msa0510040:exon |
| AGCGGCGATTACCTTGGGAA+AGG | 0.569473 | 3_4:+58766704 | Msa0510040:CDS |
| TTAGGAACAATGAATGTCGT+TGG | 0.571428 | 3_4:+58766936 | Msa0510040:CDS |
| AAAACCTCTAATGAAATGAG+AGG | 0.573289 | 3_4:-58769079 | None:intergenic |
| GAAACCCTTTAGCTGTTGAA+GGG | 0.577893 | 3_4:-58765974 | None:intergenic |
| ACCTGAACAGAAGATTTGAA+TGG | 0.578768 | 3_4:-58764437 | None:intergenic |
| AGAGATCCTTATCCTAAGGT+GGG | 0.580788 | 3_4:+58768855 | Msa0510040:three_prime_UTR |
| ACTTCTATGTAACTCTTCAA+AGG | 0.581904 | 3_4:-58768321 | None:intergenic |
| CAATAAATTTGGCGACCAGA+AGG | 0.585111 | 3_4:-58766303 | None:intergenic |
| AAAACCGACAATAGCAGCAT+GGG | 0.585952 | 3_4:-58765926 | None:intergenic |
| GTATTCTCATCAGCCAAACA+TGG | 0.590091 | 3_4:+58766057 | Msa0510040:CDS |
| TTCTTAGAAGTAGAAACTCA+TGG | 0.597566 | 3_4:-58764696 | None:intergenic |
| ATGAAAGCATAAATAAGTGG+TGG | 0.604379 | 3_4:-58765573 | None:intergenic |
| GTTGGCAATTCTTGTTAAAG+GGG | 0.604893 | 3_4:+58769153 | Msa0510040:three_prime_UTR |
| ATTATCAGAGATTTGAACAG+CGG | 0.606940 | 3_4:-58764729 | None:intergenic |
| TAACAAAAGTTAGTAGAAAG+GGG | 0.606993 | 3_4:+58768815 | Msa0510040:three_prime_UTR |
| ACTCTTACAATCATTACACC+TGG | 0.609301 | 3_4:-58767955 | None:intergenic |
| TCGGTCGGCGGTAAATTACA+TGG | 0.613139 | 3_4:+58767200 | Msa0510040:CDS |
| TTGGCAATTCTTGTTAAAGG+GGG | 0.617514 | 3_4:+58769154 | Msa0510040:three_prime_UTR |
| ACGGATGAAGAAGCAGTGAA+AGG | 0.618073 | 3_4:+58768126 | Msa0510040:CDS |
| GATGACAGCAGAAATGATGA+TGG | 0.627258 | 3_4:-58767331 | None:intergenic |
| ATACAAATACAAATACATGC+AGG | 0.627364 | 3_4:-58769003 | None:intergenic |
| TTTCTATAGACAGATGTCCC+AGG | 0.630261 | 3_4:-58767901 | None:intergenic |
| TAAAACCGACAATAGCAGCA+TGG | 0.633354 | 3_4:-58765927 | None:intergenic |
| TGAAATGGACAATGGCATAG+TGG | 0.633977 | 3_4:+58768702 | Msa0510040:three_prime_UTR |
| AAACCTCTAATGAAATGAGA+GGG | 0.636257 | 3_4:-58769078 | None:intergenic |
| TTGCATGGGAGCATTCTTTG+GGG | 0.638724 | 3_4:+58767416 | Msa0510040:CDS |
| CGATATAGCAATAGGACCAG+TGG | 0.642615 | 3_4:+58765608 | Msa0510040:CDS |
| TATTCCCTATACTTAACTGG+GGG | 0.663981 | 3_4:+58765228 | Msa0510040:CDS |
| ATAACACGCGCAGATAAACA+AGG | 0.670320 | 3_4:+58766502 | Msa0510040:CDS |
| TAGTCCATAGAAAGCTAACA+CGG | 0.678351 | 3_4:+58768977 | Msa0510040:three_prime_UTR |
| ATATTCCCTATACTTAACTG+GGG | 0.678687 | 3_4:+58765227 | Msa0510040:CDS |
| GAGATCCTTATCCTAAGGTG+GGG | 0.679536 | 3_4:+58768856 | Msa0510040:three_prime_UTR |
| TGAGAATACTGCCTTCAACA+CGG | 0.684095 | 3_4:-58766043 | None:intergenic |
| AGATCCTATTACAAGTGACA+AGG | 0.684935 | 3_4:+58767851 | Msa0510040:CDS |
| ATCCAACTATATAAACGAGG+AGG | 0.685545 | 3_4:+58764672 | Msa0510040:five_prime_UTR |
| CAACAGCTGCTGCAACAGTG+AGG | 0.697666 | 3_4:-58768605 | None:intergenic |
| TTTATCCAACTATATAAACG+AGG | 0.702213 | 3_4:+58764669 | Msa0510040:five_prime_UTR |
| GAGAATGATGAAATGGACAA+TGG | 0.705693 | 3_4:+58768694 | Msa0510040:three_prime_UTR |
| AGTCCATAGAAAGCTAACAC+GGG | 0.705928 | 3_4:+58768978 | Msa0510040:three_prime_UTR |
| GTCTTACATAGTCCATACTG+TGG | 0.710058 | 3_4:-58765450 | None:intergenic |
| GACAGCAGAAATGATGATGG+CGG | 0.713860 | 3_4:-58767328 | None:intergenic |
| CAATACAACTGATATCAATG+GGG | 0.724749 | 3_4:-58766461 | None:intergenic |
| GTTACTGACATCGATACGAG+TGG | 0.726960 | 3_4:+58768290 | Msa0510040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTGTAATTTAATGTTA+CGG | + | chr3_4:58764900-58764919 | Msa0510040:intron | 10.0% |
| !! | TTACAATCTTAAAAAATTTA+GGG | + | chr3_4:58765256-58765275 | Msa0510040:CDS | 10.0% |
| !!! | TTATTATATCTGAAATATTT+AGG | + | chr3_4:58766355-58766374 | Msa0510040:intron | 10.0% |
| !! | AAAATAAATGTTAGGATATA+AGG | - | chr3_4:58764652-58764671 | None:intergenic | 15.0% |
| !! | GTTACAATCTTAAAAAATTT+AGG | + | chr3_4:58765255-58765274 | Msa0510040:CDS | 15.0% |
| !! | TACAATCTTAAAAAATTTAG+GGG | + | chr3_4:58765257-58765276 | Msa0510040:CDS | 15.0% |
| !! | AACACTTATAAAAAAAATCT+TGG | - | chr3_4:58765490-58765509 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTATAAGTGTTT+TGG | + | chr3_4:58765491-58765510 | Msa0510040:intron | 15.0% |
| !! | TTAATGTCATACAATAAATT+TGG | - | chr3_4:58766317-58766336 | None:intergenic | 15.0% |
| !! | TATAATAATAAGATGAAGTA+GGG | - | chr3_4:58766343-58766362 | None:intergenic | 15.0% |
| !! | ATATAATAATAAGATGAAGT+AGG | - | chr3_4:58766344-58766363 | None:intergenic | 15.0% |
| !! | GATATAAATTATGATACTAT+AGG | + | chr3_4:58768441-58768460 | Msa0510040:intron | 15.0% |
| !! | TTAAACAAAATTCTCTATGT+AGG | + | chr3_4:58764471-58764490 | Msa0510040:five_prime_UTR | 20.0% |
| !! | AAAACAAGGAAAAATGAATA+AGG | + | chr3_4:58764611-58764630 | Msa0510040:five_prime_UTR | 20.0% |
| !! | AGTTGGATAAAATAAATGTT+AGG | - | chr3_4:58764660-58764679 | None:intergenic | 20.0% |
| !! | TAAAATATAGGCAATTTCTA+TGG | - | chr3_4:58764772-58764791 | None:intergenic | 20.0% |
| !!! | GTAGATTGATGATAAAATAT+AGG | - | chr3_4:58764784-58764803 | None:intergenic | 20.0% |
| !! | CTTCAATCTGTTATTATATA+GGG | - | chr3_4:58764960-58764979 | None:intergenic | 20.0% |
| !! | ATATTTGATGTTCTTATACT+TGG | + | chr3_4:58765382-58765401 | Msa0510040:intron | 20.0% |
| !!! | TTATACTTGGTTTGAAAAAT+AGG | + | chr3_4:58765395-58765414 | Msa0510040:intron | 20.0% |
| !!! | ACATTTTAGTTTTAATTCCA+AGG | - | chr3_4:58765999-58766018 | None:intergenic | 20.0% |
| !!! | TGGTAGGAAATTTTAATATT+AGG | - | chr3_4:58766182-58766201 | None:intergenic | 20.0% |
| !!! | TAATATTTAACATTTTGCAG+TGG | + | chr3_4:58766239-58766258 | Msa0510040:intron | 20.0% |
| !! | TGTTATGAATACAAAAAAAG+TGG | - | chr3_4:58766488-58766507 | None:intergenic | 20.0% |
| !!! | GTTCATGAAATTTATTTTAG+CGG | + | chr3_4:58766686-58766705 | Msa0510040:CDS | 20.0% |
| !!! | CTAATTAAACTATTGCATTT+TGG | + | chr3_4:58766831-58766850 | Msa0510040:intron | 20.0% |
| !!! | TTCATACATCTACAATTTTA+TGG | + | chr3_4:58767076-58767095 | Msa0510040:intron | 20.0% |
| !! | TTGTTTCAATGTATAAACAA+AGG | - | chr3_4:58768043-58768062 | None:intergenic | 20.0% |
| !! | AAATTATGATACTATAGGAT+AGG | + | chr3_4:58768446-58768465 | Msa0510040:intron | 20.0% |
| !! | ATATGTCAAAGAAAAATCTA+GGG | - | chr3_4:58768956-58768975 | None:intergenic | 20.0% |
| !! | TATATGTCAAAGAAAAATCT+AGG | - | chr3_4:58768957-58768976 | None:intergenic | 20.0% |
| !! | GTATTTGTAACATTGTATTA+AGG | + | chr3_4:58769022-58769041 | Msa0510040:three_prime_UTR | 20.0% |
| ! | TTTCAAATATCTAAGTACGT+TGG | - | chr3_4:58764524-58764543 | None:intergenic | 25.0% |
| ! | TTTATCCAACTATATAAACG+AGG | + | chr3_4:58764669-58764688 | Msa0510040:five_prime_UTR | 25.0% |
| ! | ATTTATGAACTATCTAGTTG+AGG | + | chr3_4:58764829-58764848 | Msa0510040:intron | 25.0% |
| ! | CCTTCAATCTGTTATTATAT+AGG | - | chr3_4:58764961-58764980 | None:intergenic | 25.0% |
| ! | CCTATATAATAACAGATTGA+AGG | + | chr3_4:58764958-58764977 | Msa0510040:intron | 25.0% |
| !! | ATGTTTCTTTTACAGTGTAT+TGG | - | chr3_4:58765133-58765152 | None:intergenic | 25.0% |
| !!! | TCAACTTTTTTGATGTACTT+TGG | - | chr3_4:58765190-58765209 | None:intergenic | 25.0% |
| !!! | ACATCAAAAAAGTTGATACT+TGG | + | chr3_4:58765194-58765213 | Msa0510040:CDS | 25.0% |
| ! | TGGTTTGAAAAATAGGATAT+TGG | + | chr3_4:58765402-58765421 | Msa0510040:intron | 25.0% |
| ! | TGATGATCTTATAACTGAAT+CGG | + | chr3_4:58765850-58765869 | Msa0510040:intron | 25.0% |
| !!! | GGAAATTTTAATATTAGGCA+GGG | - | chr3_4:58766177-58766196 | None:intergenic | 25.0% |
| !!! | AGGAAATTTTAATATTAGGC+AGG | - | chr3_4:58766178-58766197 | None:intergenic | 25.0% |
| ! | AACTGGCAAACTATATTAAT+CGG | + | chr3_4:58766262-58766281 | Msa0510040:CDS | 25.0% |
| !!! | TATTTCATGTTGTGTTGATT+AGG | + | chr3_4:58766399-58766418 | Msa0510040:intron | 25.0% |
| !!! | ATTTCATGTTGTGTTGATTA+GGG | + | chr3_4:58766400-58766419 | Msa0510040:intron | 25.0% |
| ! | ACAATACAACTGATATCAAT+GGG | - | chr3_4:58766465-58766484 | None:intergenic | 25.0% |
| ! | AGTATTAATCAGAATGTGAA+TGG | - | chr3_4:58766557-58766576 | None:intergenic | 25.0% |
| ! | TAAATTTCATGAACAGATGA+AGG | - | chr3_4:58766680-58766699 | None:intergenic | 25.0% |
| ! | TAGAAAACTGTTGAAGTAAA+TGG | - | chr3_4:58766814-58766833 | None:intergenic | 25.0% |
| !!! | ACTATTGCATTTTGGTTTTT+AGG | + | chr3_4:58766839-58766858 | Msa0510040:intron | 25.0% |
| ! | ATGAAGGATTATCAATTAGA+TGG | + | chr3_4:58766894-58766913 | Msa0510040:CDS | 25.0% |
| !!! | CAGACAACAGTTTTTAATTT+CGG | + | chr3_4:58767028-58767047 | Msa0510040:intron | 25.0% |
| !! | TTTGGAGTGTATTTAAAAAG+AGG | - | chr3_4:58767297-58767316 | None:intergenic | 25.0% |
| ! | AGCATAGTATAACTAAGATT+TGG | - | chr3_4:58767487-58767506 | None:intergenic | 25.0% |
| ! | TTGTCAAAGTAATTCCTAAT+AGG | + | chr3_4:58767512-58767531 | Msa0510040:intron | 25.0% |
| ! | TGTCAAAGTAATTCCTAATA+GGG | + | chr3_4:58767513-58767532 | Msa0510040:intron | 25.0% |
| !! | CTAGTCTTTAAATTTAAGGT+TGG | - | chr3_4:58767566-58767585 | None:intergenic | 25.0% |
| ! | CAACCTTAAATTTAAAGACT+AGG | + | chr3_4:58767564-58767583 | Msa0510040:intron | 25.0% |
| !! | AGTCCTAGTCTTTAAATTTA+AGG | - | chr3_4:58767570-58767589 | None:intergenic | 25.0% |
| ! | ATAATAAAGTACATAGACTC+CGG | - | chr3_4:58767662-58767681 | None:intergenic | 25.0% |
| ! | ATATCACAGCAATTTAAACA+AGG | + | chr3_4:58767711-58767730 | Msa0510040:intron | 25.0% |
| ! | TTTCAATGTATAAACAAAGG+AGG | - | chr3_4:58768040-58768059 | None:intergenic | 25.0% |
| ! | TCTCAAGAAAAAGTTCAAAT+TGG | - | chr3_4:58768067-58768086 | None:intergenic | 25.0% |
| ! | TTTCTTGCAGAATATTAAGA+TGG | + | chr3_4:58768100-58768119 | Msa0510040:intron | 25.0% |
| ! | TCAAAAATTGAATTCTTGTG+TGG | - | chr3_4:58768158-58768177 | None:intergenic | 25.0% |
| ! | TATGAGGCTAAAACAAATTA+AGG | - | chr3_4:58768218-58768237 | None:intergenic | 25.0% |
| !! | AGTCTAAAACAAATTACTCA+AGG | - | chr3_4:58768243-58768262 | None:intergenic | 25.0% |
| ! | AGCTTCTTCATATACATAAA+TGG | - | chr3_4:58768400-58768419 | None:intergenic | 25.0% |
| ! | TTTATGTATATGAAGAAGCT+TGG | + | chr3_4:58768400-58768419 | Msa0510040:intron | 25.0% |
| ! | CAAACTTTACACATCAAATT+TGG | + | chr3_4:58768554-58768573 | Msa0510040:CDS | 25.0% |
| ! | TCAAATTTGGCTAACATAAT+TGG | + | chr3_4:58768567-58768586 | Msa0510040:CDS | 25.0% |
| !! | CTCTTAACTGAATTTTTCAT+GGG | - | chr3_4:58768659-58768678 | None:intergenic | 25.0% |
| !! | TCTCTTAACTGAATTTTTCA+TGG | - | chr3_4:58768660-58768679 | None:intergenic | 25.0% |
| ! | ATTCAGTTAAGAGAGAAAAT+TGG | + | chr3_4:58768666-58768685 | Msa0510040:three_prime_UTR | 25.0% |
| ! | ACTAACAAAAGTTAGTAGAA+AGG | + | chr3_4:58768813-58768832 | Msa0510040:three_prime_UTR | 25.0% |
| ! | CTAACAAAAGTTAGTAGAAA+GGG | + | chr3_4:58768814-58768833 | Msa0510040:three_prime_UTR | 25.0% |
| ! | TAACAAAAGTTAGTAGAAAG+GGG | + | chr3_4:58768815-58768834 | Msa0510040:three_prime_UTR | 25.0% |
| ! | TATGTCAAAGAAAAATCTAG+GGG | - | chr3_4:58768955-58768974 | None:intergenic | 25.0% |
| ! | ATACAAATACAAATACATGC+AGG | - | chr3_4:58769006-58769025 | None:intergenic | 25.0% |
| ! | TTGTAACATTGTATTAAGGA+TGG | + | chr3_4:58769026-58769045 | Msa0510040:three_prime_UTR | 25.0% |
| !! | TCATTAGAGGTTTTCATAAA+AGG | + | chr3_4:58769088-58769107 | Msa0510040:three_prime_UTR | 25.0% |
| !!! | TTTTTTCTTCCATTTAGTGT+TGG | + | chr3_4:58769135-58769154 | Msa0510040:three_prime_UTR | 25.0% |
| GTCAAATATTTGATCAGTGT+CGG | + | chr3_4:58764581-58764600 | Msa0510040:five_prime_UTR | 30.0% | |
| TTCTTAGAAGTAGAAACTCA+TGG | - | chr3_4:58764699-58764718 | None:intergenic | 30.0% | |
| ATTATCAGAGATTTGAACAG+CGG | - | chr3_4:58764732-58764751 | None:intergenic | 30.0% | |
| AATATAGGCAATTTCTATGG+TGG | - | chr3_4:58764769-58764788 | None:intergenic | 30.0% | |
| ATGTTACGGTTAGACTTTAT+TGG | + | chr3_4:58764914-58764933 | Msa0510040:intron | 30.0% | |
| TTGTCTGTATCTTTATCAGT+TGG | - | chr3_4:58765011-58765030 | None:intergenic | 30.0% | |
| AGATACAGACAAAAACAAGA+TGG | + | chr3_4:58765019-58765038 | Msa0510040:CDS | 30.0% | |
| ATTGCAACTTTGTAAGCATA+TGG | - | chr3_4:58765080-58765099 | None:intergenic | 30.0% | |
| !! | TTGAATAAGTTCTGTTTTGG+AGG | - | chr3_4:58765104-58765123 | None:intergenic | 30.0% |
| TCCAAAACAGAACTTATTCA+AGG | + | chr3_4:58765103-58765122 | Msa0510040:CDS | 30.0% | |
| ! | TCCTTGAATAAGTTCTGTTT+TGG | - | chr3_4:58765107-58765126 | None:intergenic | 30.0% |
| TCATATTCCCTATACTTAAC+TGG | + | chr3_4:58765225-58765244 | Msa0510040:CDS | 30.0% | |
| CATATTCCCTATACTTAACT+GGG | + | chr3_4:58765226-58765245 | Msa0510040:CDS | 30.0% | |
| ATATTCCCTATACTTAACTG+GGG | + | chr3_4:58765227-58765246 | Msa0510040:CDS | 30.0% | |
| TCATAAGTCAAAATTACCTG+AGG | - | chr3_4:58765323-58765342 | None:intergenic | 30.0% | |
| CAAAGCTTGAATCTGTAAAA+GGG | - | chr3_4:58765551-58765570 | None:intergenic | 30.0% | |
| ACAAAGCTTGAATCTGTAAA+AGG | - | chr3_4:58765552-58765571 | None:intergenic | 30.0% | |
| ! | ATGAAAGCATAAATAAGTGG+TGG | - | chr3_4:58765576-58765595 | None:intergenic | 30.0% |
| ACCACTTATTTATGCTTTCA+TGG | + | chr3_4:58765575-58765594 | Msa0510040:CDS | 30.0% | |
| CCACTTATTTATGCTTTCAT+GGG | + | chr3_4:58765576-58765595 | Msa0510040:CDS | 30.0% | |
| TTCTGTCAAAAAACCAGATT+AGG | + | chr3_4:58765883-58765902 | Msa0510040:intron | 30.0% | |
| AGAAGAACAAGAAATTCTTC+TGG | + | chr3_4:58766425-58766444 | Msa0510040:CDS | 30.0% | |
| GAAGAACAAGAAATTCTTCT+GGG | + | chr3_4:58766426-58766445 | Msa0510040:CDS | 30.0% | |
| CAATACAACTGATATCAATG+GGG | - | chr3_4:58766464-58766483 | None:intergenic | 30.0% | |
| GACAATACAACTGATATCAA+TGG | - | chr3_4:58766466-58766485 | None:intergenic | 30.0% | |
| !! | GGTCAAAAACTTTAGTTCTA+TGG | - | chr3_4:58766616-58766635 | None:intergenic | 30.0% |
| ! | TTTTGACCATTGATATGTGA+AGG | + | chr3_4:58766628-58766647 | Msa0510040:intron | 30.0% |
| GATTTACCTTCACATATCAA+TGG | - | chr3_4:58766637-58766656 | None:intergenic | 30.0% | |
| AAGGTAAATCACATAGAGAA+AGG | + | chr3_4:58766647-58766666 | Msa0510040:intron | 30.0% | |
| AGGTAAATCACATAGAGAAA+GGG | + | chr3_4:58766648-58766667 | Msa0510040:intron | 30.0% | |
| !!! | CAATTTTAAAACCTTTCCCA+AGG | - | chr3_4:58766718-58766737 | None:intergenic | 30.0% |
| !!! | CTTGGGAAAGGTTTTAAAAT+TGG | + | chr3_4:58766716-58766735 | Msa0510040:CDS | 30.0% |
| AAATGTTCTTCCAATAGCTA+TGG | - | chr3_4:58766868-58766887 | None:intergenic | 30.0% | |
| AAGAACATTTGCATCTATGA+AGG | + | chr3_4:58766878-58766897 | Msa0510040:CDS | 30.0% | |
| ATTAGATGGAAACAGAGAAA+TGG | + | chr3_4:58766908-58766927 | Msa0510040:CDS | 30.0% | |
| ! | TTCTATGACTTCTTGTTATG+TGG | + | chr3_4:58766959-58766978 | Msa0510040:CDS | 30.0% |
| GTCAAAGTAATTCCTAATAG+GGG | + | chr3_4:58767514-58767533 | Msa0510040:intron | 30.0% | |
| TTTAAAGACTAGGACTAAGT+AGG | + | chr3_4:58767574-58767593 | Msa0510040:intron | 30.0% | |
| TGAAACCTGTCACAAAAATA+AGG | - | chr3_4:58767818-58767837 | None:intergenic | 30.0% | |
| TTCTTTAACATAGTTGGAGT+TGG | - | chr3_4:58768001-58768020 | None:intergenic | 30.0% | |
| ACTCCAACTATGTTAAAGAA+AGG | + | chr3_4:58768001-58768020 | Msa0510040:CDS | 30.0% | |
| GTACCTTTCTTTAACATAGT+TGG | - | chr3_4:58768007-58768026 | None:intergenic | 30.0% | |
| CAGAATATTAAGATGGCTAA+CGG | + | chr3_4:58768107-58768126 | Msa0510040:intron | 30.0% | |
| CAAATTACTCAAGGAATATG+AGG | - | chr3_4:58768234-58768253 | None:intergenic | 30.0% | |
| ATTGTGATTATATGTTGCAG+CGG | + | chr3_4:58768268-58768287 | Msa0510040:intron | 30.0% | |
| ACTTCTATGTAACTCTTCAA+AGG | - | chr3_4:58768324-58768343 | None:intergenic | 30.0% | |
| !! | TCTTGAAAAAAGAAGTGTTC+AGG | + | chr3_4:58768343-58768362 | Msa0510040:CDS | 30.0% |
| CAAAATTAATCATGTCTGCT+AGG | + | chr3_4:58768369-58768388 | Msa0510040:intron | 30.0% | |
| TCAAACAAGAAACATACTCT+TGG | - | chr3_4:58768495-58768514 | None:intergenic | 30.0% | |
| TAGATGATAGCAAAGTCAAA+AGG | + | chr3_4:58768742-58768761 | Msa0510040:three_prime_UTR | 30.0% | |
| ! | TAATTTAATTTCCCCACCTT+AGG | - | chr3_4:58768870-58768889 | None:intergenic | 30.0% |
| AAACCTCTAATGAAATGAGA+GGG | - | chr3_4:58769081-58769100 | None:intergenic | 30.0% | |
| AAAACCTCTAATGAAATGAG+AGG | - | chr3_4:58769082-58769101 | None:intergenic | 30.0% | |
| TGTTGGCAATTCTTGTTAAA+GGG | + | chr3_4:58769152-58769171 | Msa0510040:three_prime_UTR | 30.0% | |
| ACCATTCAAATCTTCTGTTC+AGG | + | chr3_4:58764436-58764455 | Msa0510040:five_prime_UTR | 35.0% | |
| ACCTGAACAGAAGATTTGAA+TGG | - | chr3_4:58764440-58764459 | None:intergenic | 35.0% | |
| ! | CTCTATGTAGGATCTACTTT+TGG | + | chr3_4:58764483-58764502 | Msa0510040:five_prime_UTR | 35.0% |
| !! | GTGTCGGTTAAACAAAAACA+AGG | + | chr3_4:58764597-58764616 | Msa0510040:five_prime_UTR | 35.0% |
| ATCCAACTATATAAACGAGG+AGG | + | chr3_4:58764672-58764691 | Msa0510040:five_prime_UTR | 35.0% | |
| TTAGACTTTATTGGCATCAC+TGG | + | chr3_4:58764923-58764942 | Msa0510040:intron | 35.0% | |
| TTATCAGTTGGAGAATCCAT+TGG | - | chr3_4:58764999-58765018 | None:intergenic | 35.0% | |
| ! | TGGTCTTTGAAAGATCTTAG+AGG | - | chr3_4:58765170-58765189 | None:intergenic | 35.0% |
| TATTCCCTATACTTAACTGG+GGG | + | chr3_4:58765228-58765247 | Msa0510040:CDS | 35.0% | |
| TTTAGGGGAGATATAATAGC+TGG | + | chr3_4:58765272-58765291 | Msa0510040:CDS | 35.0% | |
| ATACTCTAAGCTTGCACATT+TGG | + | chr3_4:58765425-58765444 | Msa0510040:CDS | 35.0% | |
| ! | CCCATGAAAGCATAAATAAG+TGG | - | chr3_4:58765579-58765598 | None:intergenic | 35.0% |
| !!! | TTTACTGCCACTTTTTTTGC+TGG | + | chr3_4:58765714-58765733 | Msa0510040:CDS | 35.0% |
| !!! | TTACTGCCACTTTTTTTGCT+GGG | + | chr3_4:58765715-58765734 | Msa0510040:CDS | 35.0% |
| TGTAATCCCAGCAAAAAAAG+TGG | - | chr3_4:58765724-58765743 | None:intergenic | 35.0% | |
| GTCAATCAAGAATCCTAATC+TGG | - | chr3_4:58765899-58765918 | None:intergenic | 35.0% | |
| TGATATTATCTCCGTGTTGA+AGG | + | chr3_4:58766032-58766051 | Msa0510040:CDS | 35.0% | |
| ! | TTAACATTTTGCAGTGGAAC+TGG | + | chr3_4:58766245-58766264 | Msa0510040:intron | 35.0% |
| !!! | AAGCTTTTTGAGTTTCCTTC+TGG | + | chr3_4:58766288-58766307 | Msa0510040:CDS | 35.0% |
| !!! | AGGTTTTAAAATTGGCGTCA+TGG | + | chr3_4:58766724-58766743 | Msa0510040:CDS | 35.0% |
| GGAGAAATACTCATAAAGAG+AGG | - | chr3_4:58766793-58766812 | None:intergenic | 35.0% | |
| !! | TTTTAGGAAGCCATAGCTAT+TGG | + | chr3_4:58766855-58766874 | Msa0510040:intron | 35.0% |
| TTAGGAACAATGAATGTCGT+TGG | + | chr3_4:58766936-58766955 | Msa0510040:CDS | 35.0% | |
| !!! | GATCGATTTTTTTCCCTTTC+AGG | + | chr3_4:58767168-58767187 | Msa0510040:intron | 35.0% |
| CAATATTAGAGACTGCAGTT+TGG | - | chr3_4:58767233-58767252 | None:intergenic | 35.0% | |
| !! | ATCAGGCAGCAATTTTGATA+TGG | + | chr3_4:58767367-58767386 | Msa0510040:CDS | 35.0% |
| !! | ATTCGATTTTGTTGCTTGCA+TGG | + | chr3_4:58767401-58767420 | Msa0510040:CDS | 35.0% |
| !! | TTCGATTTTGTTGCTTGCAT+GGG | + | chr3_4:58767402-58767421 | Msa0510040:CDS | 35.0% |
| !!! | TGAGACCTTATTTTTGTGAC+AGG | + | chr3_4:58767810-58767829 | Msa0510040:intron | 35.0% |
| AGATCCTATTACAAGTGACA+AGG | + | chr3_4:58767851-58767870 | Msa0510040:CDS | 35.0% | |
| ! | TACTAGCTTCTGTGTATTGT+TGG | - | chr3_4:58767930-58767949 | None:intergenic | 35.0% |
| ACAATACACAGAAGCTAGTA+AGG | + | chr3_4:58767930-58767949 | Msa0510040:CDS | 35.0% | |
| ACTCTTACAATCATTACACC+TGG | - | chr3_4:58767958-58767977 | None:intergenic | 35.0% | |
| TATGTAACTCTTCAAAGGCA+TGG | - | chr3_4:58768319-58768338 | None:intergenic | 35.0% | |
| TTTGGCTAACATAATTGGTC+AGG | + | chr3_4:58768572-58768591 | Msa0510040:CDS | 35.0% | |
| GAGAATGATGAAATGGACAA+TGG | + | chr3_4:58768694-58768713 | Msa0510040:three_prime_UTR | 35.0% | |
| TAGTCCATAGAAAGCTAACA+CGG | + | chr3_4:58768977-58768996 | Msa0510040:three_prime_UTR | 35.0% | |
| TATCCCTCTCATTTCATTAG+AGG | + | chr3_4:58769075-58769094 | Msa0510040:three_prime_UTR | 35.0% | |
| CAAGAATTGCCAACACTAAA+TGG | - | chr3_4:58769147-58769166 | None:intergenic | 35.0% | |
| ! | GTGTTGGCAATTCTTGTTAA+AGG | + | chr3_4:58769151-58769170 | Msa0510040:three_prime_UTR | 35.0% |
| GTTGGCAATTCTTGTTAAAG+GGG | + | chr3_4:58769153-58769172 | Msa0510040:three_prime_UTR | 35.0% | |
| TTGGCAATTCTTGTTAAAGG+GGG | + | chr3_4:58769154-58769173 | Msa0510040:three_prime_UTR | 35.0% | |
| CAGAAGATTTGAATGGTCAC+TGG | - | chr3_4:58764433-58764452 | None:intergenic | 40.0% | |
| GTCCTCCTCGTTTATATAGT+TGG | - | chr3_4:58764677-58764696 | None:intergenic | 40.0% | |
| TAGTTGAGGTGTAAGCAACA+TGG | + | chr3_4:58764843-58764862 | Msa0510040:intron | 40.0% | |
| TTCTCCCCCAGTTAAGTATA+GGG | - | chr3_4:58765235-58765254 | None:intergenic | 40.0% | |
| GTCTTACATAGTCCATACTG+TGG | - | chr3_4:58765453-58765472 | None:intergenic | 40.0% | |
| AGTTCTCGCGATATAGCAAT+AGG | + | chr3_4:58765600-58765619 | Msa0510040:CDS | 40.0% | |
| TATTCTTCTGCATGCGTAAC+AGG | - | chr3_4:58765681-58765700 | None:intergenic | 40.0% | |
| GGATTACACAAGCAACTCTT+GGG | + | chr3_4:58765736-58765755 | Msa0510040:CDS | 40.0% | |
| ! | AAGCAACTCTTGGGATTTTC+AGG | + | chr3_4:58765745-58765764 | Msa0510040:CDS | 40.0% |
| GCTGGTAGTACATGTATATC+CGG | - | chr3_4:58765799-58765818 | None:intergenic | 40.0% | |
| AGTGTAACATTAGTAGCAGC+TGG | - | chr3_4:58765817-58765836 | None:intergenic | 40.0% | |
| AAAACCGACAATAGCAGCAT+GGG | - | chr3_4:58765929-58765948 | None:intergenic | 40.0% | |
| TAAAACCGACAATAGCAGCA+TGG | - | chr3_4:58765930-58765949 | None:intergenic | 40.0% | |
| !!! | TGCTGCTATTGTCGGTTTTA+TGG | + | chr3_4:58765930-58765949 | Msa0510040:CDS | 40.0% |
| !!! | GCTGCTATTGTCGGTTTTAT+GGG | + | chr3_4:58765931-58765950 | Msa0510040:CDS | 40.0% |
| !!! | CTGCTATTGTCGGTTTTATG+GGG | + | chr3_4:58765932-58765951 | Msa0510040:CDS | 40.0% |
| !!! | TGCTATTGTCGGTTTTATGG+GGG | + | chr3_4:58765933-58765952 | Msa0510040:CDS | 40.0% |
| AATTGCCCTTCAACAGCTAA+AGG | + | chr3_4:58765969-58765988 | Msa0510040:CDS | 40.0% | |
| ATTGCCCTTCAACAGCTAAA+GGG | + | chr3_4:58765970-58765989 | Msa0510040:CDS | 40.0% | |
| GAAACCCTTTAGCTGTTGAA+GGG | - | chr3_4:58765977-58765996 | None:intergenic | 40.0% | |
| TGAGAATACTGCCTTCAACA+CGG | - | chr3_4:58766046-58766065 | None:intergenic | 40.0% | |
| GTATTCTCATCAGCCAAACA+TGG | + | chr3_4:58766057-58766076 | Msa0510040:CDS | 40.0% | |
| GAGATAGCATACTCCATGTT+TGG | - | chr3_4:58766073-58766092 | None:intergenic | 40.0% | |
| TTGCAAACATACACACTGGT+AGG | - | chr3_4:58766198-58766217 | None:intergenic | 40.0% | |
| CAATAAATTTGGCGACCAGA+AGG | - | chr3_4:58766306-58766325 | None:intergenic | 40.0% | |
| ATAACACGCGCAGATAAACA+AGG | + | chr3_4:58766502-58766521 | Msa0510040:CDS | 40.0% | |
| !!! | TATTTTAGCGGCGATTACCT+TGG | + | chr3_4:58766698-58766717 | Msa0510040:CDS | 40.0% |
| !! | ATTTTAGCGGCGATTACCTT+GGG | + | chr3_4:58766699-58766718 | Msa0510040:CDS | 40.0% |
| ! | TTTAAAATTGGCGTCATGGC+AGG | + | chr3_4:58766728-58766747 | Msa0510040:CDS | 40.0% |
| ! | AACAGAGAAATGGTAGCGTT+AGG | + | chr3_4:58766918-58766937 | Msa0510040:CDS | 40.0% |
| ! | ACTTCTTGTTATGTGGCAAC+TGG | + | chr3_4:58766966-58766985 | Msa0510040:CDS | 40.0% |
| GATGACAGCAGAAATGATGA+TGG | - | chr3_4:58767334-58767353 | None:intergenic | 40.0% | |
| ! | GTTTTCGTCTCTGTTGAGAT+AGG | + | chr3_4:58767441-58767460 | Msa0510040:CDS | 40.0% |
| GTCTTATGTACACCCCTATT+AGG | - | chr3_4:58767529-58767548 | None:intergenic | 40.0% | |
| AGATTCTCGCATAGCATAAC+CGG | + | chr3_4:58767640-58767659 | Msa0510040:intron | 40.0% | |
| !! | TTGGCCTTGTCACTTGTAAT+AGG | - | chr3_4:58767858-58767877 | None:intergenic | 40.0% |
| !! | AAGGCCAAGAACTGCTATTT+TGG | + | chr3_4:58767870-58767889 | Msa0510040:CDS | 40.0% |
| !!! | AGGCCAAGAACTGCTATTTT+GGG | + | chr3_4:58767871-58767890 | Msa0510040:CDS | 40.0% |
| TTCCCCAAAATAGCAGTTCT+TGG | - | chr3_4:58767877-58767896 | None:intergenic | 40.0% | |
| !! | CTATTTTGGGGAAGATTCCT+GGG | + | chr3_4:58767884-58767903 | Msa0510040:CDS | 40.0% |
| TTTCTATAGACAGATGTCCC+AGG | - | chr3_4:58767904-58767923 | None:intergenic | 40.0% | |
| GGAATGCGAGAATGATGAAA+TGG | + | chr3_4:58768687-58768706 | Msa0510040:three_prime_UTR | 40.0% | |
| TGAAATGGACAATGGCATAG+TGG | + | chr3_4:58768702-58768721 | Msa0510040:three_prime_UTR | 40.0% | |
| AGAGATCCTTATCCTAAGGT+GGG | + | chr3_4:58768855-58768874 | Msa0510040:three_prime_UTR | 40.0% | |
| AATTTCCCCACCTTAGGATA+AGG | - | chr3_4:58768864-58768883 | None:intergenic | 40.0% | |
| TTATTGTGTGTGTGCACAAC+TGG | - | chr3_4:58768920-58768939 | None:intergenic | 40.0% | |
| AGTCCATAGAAAGCTAACAC+GGG | + | chr3_4:58768978-58768997 | Msa0510040:three_prime_UTR | 40.0% | |
| ! | TCAGCAATGCCTTATTGAGC+AGG | - | chr3_4:58764405-58764424 | None:intergenic | 45.0% |
| GTCACTGTTGATGTCTCCAA+TGG | + | chr3_4:58764980-58764999 | Msa0510040:exon | 45.0% | |
| CTTCTCCCCCAGTTAAGTAT+AGG | - | chr3_4:58765236-58765255 | None:intergenic | 45.0% | |
| TGCAAGTCTTTGCATACCTC+AGG | + | chr3_4:58765304-58765323 | Msa0510040:CDS | 45.0% | |
| CGATATAGCAATAGGACCAG+TGG | + | chr3_4:58765608-58765627 | Msa0510040:CDS | 45.0% | |
| GCAGTGGTTTCTCTCTTGTT+GGG | + | chr3_4:58765630-58765649 | Msa0510040:CDS | 45.0% | |
| CAGTGGTTTCTCTCTTGTTG+GGG | + | chr3_4:58765631-58765650 | Msa0510040:CDS | 45.0% | |
| GGGATTACACAAGCAACTCT+TGG | + | chr3_4:58765735-58765754 | Msa0510040:CDS | 45.0% | |
| CTATCCCATGCTGCTATTGT+CGG | + | chr3_4:58765922-58765941 | Msa0510040:CDS | 45.0% | |
| !!! | GCTATTGTCGGTTTTATGGG+GGG | + | chr3_4:58765934-58765953 | Msa0510040:CDS | 45.0% |
| GGAAACCCTTTAGCTGTTGA+AGG | - | chr3_4:58765978-58765997 | None:intergenic | 45.0% | |
| CAACAGCTAAAGGGTTTCCT+TGG | + | chr3_4:58765979-58765998 | Msa0510040:CDS | 45.0% | |
| GCACTTGCAAACATACACAC+TGG | - | chr3_4:58766202-58766221 | None:intergenic | 45.0% | |
| GATATCAATGGGGCAATTGC+TGG | - | chr3_4:58766454-58766473 | None:intergenic | 45.0% | |
| CCGAGAGAAAGAACCTGAAA+GGG | - | chr3_4:58767184-58767203 | None:intergenic | 45.0% | |
| !! | CCCTTTCAGGTTCTTTCTCT+CGG | + | chr3_4:58767181-58767200 | Msa0510040:intron | 45.0% |
| ACCGAGAGAAAGAACCTGAA+AGG | - | chr3_4:58767185-58767204 | None:intergenic | 45.0% | |
| ! | TTCAGGTTCTTTCTCTCGGT+CGG | + | chr3_4:58767185-58767204 | Msa0510040:intron | 45.0% |
| !! | GACAGCAGAAATGATGATGG+CGG | - | chr3_4:58767331-58767350 | None:intergenic | 45.0% |
| TTCTGCTGTCATCAGTCTTG+TGG | + | chr3_4:58767341-58767360 | Msa0510040:CDS | 45.0% | |
| ! | CATCAGTCTTGTGGACTATC+AGG | + | chr3_4:58767350-58767369 | Msa0510040:CDS | 45.0% |
| !! | CTTGCATGGGAGCATTCTTT+GGG | + | chr3_4:58767415-58767434 | Msa0510040:CDS | 45.0% |
| !! | TTGCATGGGAGCATTCTTTG+GGG | + | chr3_4:58767416-58767435 | Msa0510040:CDS | 45.0% |
| !!! | GGCCAAGAACTGCTATTTTG+GGG | + | chr3_4:58767872-58767891 | Msa0510040:CDS | 45.0% |
| !! | GCTATTTTGGGGAAGATTCC+TGG | + | chr3_4:58767883-58767902 | Msa0510040:CDS | 45.0% |
| ACAGAAGCTAGTAAGGTTCC+AGG | + | chr3_4:58767937-58767956 | Msa0510040:CDS | 45.0% | |
| ACGGATGAAGAAGCAGTGAA+AGG | + | chr3_4:58768126-58768145 | Msa0510040:CDS | 45.0% | |
| GTTACTGACATCGATACGAG+TGG | + | chr3_4:58768290-58768309 | Msa0510040:CDS | 45.0% | |
| ! | CTTGTTTGAGCAGCTTGTTC+TGG | + | chr3_4:58768506-58768525 | Msa0510040:intron | 45.0% |
| ! | CATGGGTTCACATCTAGCTT+TGG | - | chr3_4:58768642-58768661 | None:intergenic | 45.0% |
| CTCCAGAGATCCTTATCCTA+AGG | + | chr3_4:58768851-58768870 | Msa0510040:three_prime_UTR | 45.0% | |
| CACCTTAGGATAAGGATCTC+TGG | - | chr3_4:58768856-58768875 | None:intergenic | 45.0% | |
| CAGAGATCCTTATCCTAAGG+TGG | + | chr3_4:58768854-58768873 | Msa0510040:three_prime_UTR | 45.0% | |
| GAGATCCTTATCCTAAGGTG+GGG | + | chr3_4:58768856-58768875 | Msa0510040:three_prime_UTR | 45.0% | |
| !! | TTAAATTACAATATATAATA+TGG | - | chr3_4:58764895-58764914 | None:intergenic | 5.0% |
| GCACATTTGGCACCACAGTA+TGG | + | chr3_4:58765438-58765457 | Msa0510040:CDS | 50.0% | |
| AAGAGAGAAACCACTGCCAC+TGG | - | chr3_4:58765627-58765646 | None:intergenic | 50.0% | |
| GGCAGTGGTTTCTCTCTTGT+TGG | + | chr3_4:58765629-58765648 | Msa0510040:CDS | 50.0% | |
| ! | CGAAGCACTAACACAGACAC+CGG | + | chr3_4:58765777-58765796 | Msa0510040:intron | 50.0% |
| CGACAATAGCAGCATGGGAT+AGG | - | chr3_4:58765924-58765943 | None:intergenic | 50.0% | |
| TCGGTCGGCGGTAAATTACA+TGG | + | chr3_4:58767200-58767219 | Msa0510040:CDS | 50.0% | |
| TCGGCGGTAAATTACATGGC+TGG | + | chr3_4:58767204-58767223 | Msa0510040:CDS | 50.0% | |
| !! | AATGATGATGGCGGCGAGAA+TGG | - | chr3_4:58767322-58767341 | None:intergenic | 50.0% |
| !! | GCTTGCATGGGAGCATTCTT+TGG | + | chr3_4:58767414-58767433 | Msa0510040:CDS | 50.0% |
| ! | CAGCTTGTTCTGGCAAATCC+TGG | + | chr3_4:58768516-58768535 | Msa0510040:intron | 50.0% |
| TTGTCTGTCACTGCTGAACC+AGG | - | chr3_4:58768537-58768556 | None:intergenic | 50.0% | |
| !! | GCACCCGTGTTAGCTTTCTA+TGG | - | chr3_4:58768984-58769003 | None:intergenic | 50.0% |
| AGCAATAGGACCAGTGGCAG+TGG | + | chr3_4:58765614-58765633 | Msa0510040:CDS | 55.0% | |
| AGCGGCGATTACCTTGGGAA+AGG | + | chr3_4:58766704-58766723 | Msa0510040:CDS | 55.0% | |
| GGCAGGCATGATTGCACTGA+CGG | + | chr3_4:58766745-58766764 | Msa0510040:CDS | 55.0% | |
| AGGTTCTTTCTCTCGGTCGG+CGG | + | chr3_4:58767188-58767207 | Msa0510040:intron | 55.0% | |
| ATGGCGGCGAGAATGGCATT+TGG | - | chr3_4:58767315-58767334 | None:intergenic | 55.0% | |
| CAACAGCTGCTGCAACAGTG+AGG | - | chr3_4:58768608-58768627 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 58764395 | 58769196 | 58764395 | ID=Msa0510040;Name=Msa0510040 |
| chr3_4 | mRNA | 58764395 | 58769196 | 58764395 | ID=Msa0510040-mRNA-1;Parent=Msa0510040;Name=Msa0510040-mRNA-1;_AED=0.18;_eAED=0.18;_QI=369|1|1|1|0.92|0.85|14|534|659 |
| chr3_4 | exon | 58764395 | 58764746 | 58764395 | ID=Msa0510040-mRNA-1:exon:13661;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58764973 | 58765325 | 58764973 | ID=Msa0510040-mRNA-1:exon:13662;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58765417 | 58765465 | 58765417 | ID=Msa0510040-mRNA-1:exon:13663;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58765559 | 58765766 | 58765559 | ID=Msa0510040-mRNA-1:exon:13664;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58765900 | 58766080 | 58765900 | ID=Msa0510040-mRNA-1:exon:13665;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58766259 | 58766324 | 58766259 | ID=Msa0510040-mRNA-1:exon:13666;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58766421 | 58766534 | 58766421 | ID=Msa0510040-mRNA-1:exon:13667;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58766650 | 58766766 | 58766650 | ID=Msa0510040-mRNA-1:exon:13668;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58766861 | 58766987 | 58766861 | ID=Msa0510040-mRNA-1:exon:13669;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58767190 | 58767476 | 58767190 | ID=Msa0510040-mRNA-1:exon:13670;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58767832 | 58768022 | 58767832 | ID=Msa0510040-mRNA-1:exon:13671;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58768110 | 58768192 | 58768110 | ID=Msa0510040-mRNA-1:exon:13672;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58768288 | 58768364 | 58768288 | ID=Msa0510040-mRNA-1:exon:13673;Parent=Msa0510040-mRNA-1 |
| chr3_4 | exon | 58768519 | 58769196 | 58768519 | ID=Msa0510040-mRNA-1:exon:13674;Parent=Msa0510040-mRNA-1 |
| chr3_4 | five_prime_UTR | 58764395 | 58764746 | 58764395 | ID=Msa0510040-mRNA-1:five_prime_utr;Parent=Msa0510040-mRNA-1 |
| chr3_4 | five_prime_UTR | 58764973 | 58764989 | 58764973 | ID=Msa0510040-mRNA-1:five_prime_utr;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58764990 | 58765325 | 58764990 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58765417 | 58765465 | 58765417 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58765559 | 58765766 | 58765559 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58765900 | 58766080 | 58765900 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58766259 | 58766324 | 58766259 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58766421 | 58766534 | 58766421 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58766650 | 58766766 | 58766650 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58766861 | 58766987 | 58766861 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58767190 | 58767476 | 58767190 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58767832 | 58768022 | 58767832 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58768110 | 58768192 | 58768110 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58768288 | 58768364 | 58768288 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | CDS | 58768519 | 58768662 | 58768519 | ID=Msa0510040-mRNA-1:cds;Parent=Msa0510040-mRNA-1 |
| chr3_4 | three_prime_UTR | 58768663 | 58769196 | 58768663 | ID=Msa0510040-mRNA-1:three_prime_utr;Parent=Msa0510040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
