Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379550 | XP_013461685.1 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 5.17e-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379550 | sp|Q9FQA3|GST23_MAIZE | 51.351 | 222 | 107 | 1 | 1 | 221 | 1 | 222 | 3.69e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379550 | A0A072VC23 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 2.47e-147 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025740 | Msa0379550 | 0.834138 | 3.563752e-56 | -8.615850e-47 |
| Msa0050730 | Msa0379550 | 0.821966 | 3.047816e-53 | -8.615850e-47 |
| Msa0050760 | Msa0379550 | 0.832615 | 8.542509e-56 | -8.615850e-47 |
| Msa0073460 | Msa0379550 | 0.809942 | 1.474599e-50 | -8.615850e-47 |
| Msa0090100 | Msa0379550 | 0.802322 | 5.927690e-49 | -8.615850e-47 |
| Msa0092990 | Msa0379550 | 0.804405 | 2.194868e-49 | -8.615850e-47 |
| Msa0108560 | Msa0379550 | 0.806108 | 9.655838e-50 | -8.615850e-47 |
| Msa0121620 | Msa0379550 | 0.825869 | 3.705120e-54 | -8.615850e-47 |
| Msa0137570 | Msa0379550 | 0.805845 | 1.096487e-49 | -8.615850e-47 |
| Msa0165970 | Msa0379550 | 0.812375 | 4.376628e-51 | -8.615850e-47 |
| Msa0182570 | Msa0379550 | 0.801609 | 8.307000e-49 | -8.615850e-47 |
| Msa0223290 | Msa0379550 | 0.810722 | 1.001007e-50 | -8.615850e-47 |
| Msa0223380 | Msa0379550 | 0.818465 | 1.933090e-52 | -8.615850e-47 |
| Msa0233610 | Msa0379550 | 0.809543 | 1.796149e-50 | -8.615850e-47 |
| Msa0365490 | Msa0379550 | 0.804019 | 2.640901e-49 | -8.615850e-47 |
| Msa0370430 | Msa0379550 | 0.832016 | 1.202119e-55 | -8.615850e-47 |
| Msa0379550 | Msa0380040 | 0.818753 | 1.662627e-52 | -8.615850e-47 |
| Msa0379550 | Msa0389810 | 0.822086 | 2.858809e-53 | -8.615850e-47 |
| Msa0379550 | Msa0404220 | 0.816629 | 5.011995e-52 | -8.615850e-47 |
| Msa0379550 | Msa0404230 | 0.911556 | 5.321251e-83 | -8.615850e-47 |
| Msa0379550 | Msa0426330 | 0.805683 | 1.185598e-49 | -8.615850e-47 |
| Msa0379550 | Msa0429290 | 0.808082 | 3.688921e-50 | -8.615850e-47 |
| Msa0379550 | Msa0449830 | 0.809457 | 1.874800e-50 | -8.615850e-47 |
| Msa0379550 | Msa0458440 | 0.810966 | 8.863148e-51 | -8.615850e-47 |
| Msa0379550 | Msa0464420 | 0.827627 | 1.408940e-54 | -8.615850e-47 |
| Msa0379550 | Msa0464900 | 0.834224 | 3.391080e-56 | -8.615850e-47 |
| Msa0379550 | Msa0468130 | 0.821604 | 3.696067e-53 | -8.615850e-47 |
| Msa0379550 | Msa0473240 | 0.803985 | 2.684571e-49 | -8.615850e-47 |
| Msa0379550 | Msa0475410 | 0.989385 | 6.773948e-178 | -8.615850e-47 |
| Msa0379550 | Msa0475580 | 0.805149 | 1.534187e-49 | -8.615850e-47 |
| Msa0379550 | Msa0482190 | -0.801242 | 9.875585e-49 | -8.615850e-47 |
| Msa0379550 | Msa0484780 | 0.820365 | 7.127044e-53 | -8.615850e-47 |
| Msa0379550 | Msa0489610 | 0.800369 | 1.488752e-48 | -8.615850e-47 |
| Msa0379550 | Msa0505060 | 0.803308 | 3.709481e-49 | -8.615850e-47 |
| Msa0379550 | Msa0510040 | 0.837068 | 6.463754e-57 | -8.615850e-47 |
| Msa0379550 | Msa0517330 | 0.807031 | 6.165273e-50 | -8.615850e-47 |
| Msa0379550 | Msa0519220 | 0.803142 | 4.013972e-49 | -8.615850e-47 |
| Msa0379550 | Msa0578970 | 0.802825 | 4.668837e-49 | -8.615850e-47 |
| Msa0379550 | Msa0599580 | 0.814970 | 1.174243e-51 | -8.615850e-47 |
| Msa0379550 | Msa0608710 | 0.810420 | 1.162808e-50 | -8.615850e-47 |
| Msa0379550 | Msa0610590 | 0.805306 | 1.422855e-49 | -8.615850e-47 |
| Msa0379550 | Msa0622340 | 0.804857 | 1.766088e-49 | -8.615850e-47 |
| Msa0379550 | Msa0644840 | 0.801413 | 9.111573e-49 | -8.615850e-47 |
| Msa0379550 | Msa0651190 | 0.810389 | 1.181158e-50 | -8.615850e-47 |
| Msa0379550 | Msa0662650 | 0.803441 | 3.481266e-49 | -8.615850e-47 |
| Msa0379550 | Msa0694250 | 0.820516 | 6.581392e-53 | -8.615850e-47 |
| Msa0379550 | Msa0708860 | 0.808567 | 2.907108e-50 | -8.615850e-47 |
| Msa0379550 | Msa0731180 | 0.812376 | 4.374856e-51 | -8.615850e-47 |
| Msa0379550 | Msa0756310 | 0.808011 | 3.818742e-50 | -8.615850e-47 |
| Msa0379550 | Msa0757050 | 0.803717 | 3.050931e-49 | -8.615850e-47 |
| Msa0379550 | Msa0835730 | 0.801801 | 7.583780e-49 | -8.615850e-47 |
| Msa0379550 | Msa0882510 | 0.801745 | 7.789484e-49 | -8.615850e-47 |
| Msa0379550 | Msa0899230 | 0.827066 | 1.920521e-54 | -8.615850e-47 |
| Msa0379550 | Msa0908170 | 0.848407 | 6.251774e-60 | -8.615850e-47 |
| Msa0379550 | Msa0910980 | -0.827191 | 1.793268e-54 | -8.615850e-47 |
| Msa0379550 | Msa0927670 | 0.817294 | 3.553691e-52 | -8.615850e-47 |
| Msa0379550 | Msa0960160 | 0.838656 | 2.526750e-57 | -8.615850e-47 |
| Msa0379550 | Msa0982270 | 0.823014 | 1.739759e-53 | -8.615850e-47 |
| Msa0379550 | Msa0992490 | -0.807608 | 4.651951e-50 | -8.615850e-47 |
| Msa0379550 | Msa0999040 | 0.830295 | 3.182668e-55 | -8.615850e-47 |
| Msa0379550 | Msa1039880 | 0.810125 | 1.346186e-50 | -8.615850e-47 |
| Msa0379550 | Msa1073070 | -0.804803 | 1.812725e-49 | -8.615850e-47 |
| Msa0379550 | Msa1082500 | 0.804140 | 2.491795e-49 | -8.615850e-47 |
| Msa0379550 | Msa1087470 | 0.831276 | 1.829957e-55 | -8.615850e-47 |
| Msa0379550 | Msa1092090 | 0.817887 | 2.611932e-52 | -8.615850e-47 |
| Msa0379550 | Msa1092820 | 0.802046 | 6.755598e-49 | -8.615850e-47 |
| Msa0379550 | Msa1207380 | 0.810660 | 1.032093e-50 | -8.615850e-47 |
| Msa0379550 | Msa1218650 | 0.805564 | 1.256046e-49 | -8.615850e-47 |
| Msa0379550 | Msa1233500 | 0.845028 | 5.241859e-59 | -8.615850e-47 |
| Msa0379550 | Msa1276440 | 0.806738 | 7.111298e-50 | -8.615850e-47 |
| Msa0379550 | Msa1306750 | 0.803687 | 3.095842e-49 | -8.615850e-47 |
| Msa0379550 | Msa1307740 | 0.827465 | 1.541316e-54 | -8.615850e-47 |
| Msa0379550 | Msa1308590 | 0.814378 | 1.588265e-51 | -8.615850e-47 |
| Msa0379550 | Msa1322190 | 0.803844 | 2.870945e-49 | -8.615850e-47 |
| Msa0379550 | Msa1340650 | 0.808681 | 2.747698e-50 | -8.615850e-47 |
| Msa0379550 | Msa1408790 | 0.830032 | 3.689773e-55 | -8.615850e-47 |
| Msa0379550 | Msa1419110 | 0.817389 | 3.383264e-52 | -8.615850e-47 |
| Msa0379550 | Msa1436040 | 0.832071 | 1.165269e-55 | -8.615850e-47 |
| Msa0379550 | Msa1439230 | 0.809842 | 1.549356e-50 | -8.615850e-47 |
| Msa0379550 | Msa1440600 | 0.832314 | 1.014477e-55 | -8.615850e-47 |
| Msa0379550 | Msa1444250 | -0.802859 | 4.593907e-49 | -8.615850e-47 |
| Msa0379550 | Msa1444740 | 0.805536 | 1.272979e-49 | -8.615850e-47 |
| Msa0269450 | Msa0379550 | 0.812047 | 5.159695e-51 | -8.615850e-47 |
| Msa0282250 | Msa0379550 | 0.807240 | 5.567667e-50 | -8.615850e-47 |
| Msa0292180 | Msa0379550 | 0.818613 | 1.789176e-52 | -8.615850e-47 |
| Msa0335040 | Msa0379550 | 0.806467 | 8.111434e-50 | -8.615850e-47 |
| Msa0347650 | Msa0379550 | 0.801120 | 1.046086e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379550 | MtrunA17_Chr3g0132581 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 4.75e-151 | 418 |
| Msa0379550 | MtrunA17_Chr4g0008781 | 50.476 | 210 | 104 | 0 | 4 | 213 | 7 | 216 | 1.07e-72 | 220 |
| Msa0379550 | MtrunA17_Chr7g0240631 | 48.182 | 220 | 112 | 2 | 4 | 222 | 6 | 224 | 3.47e-71 | 216 |
| Msa0379550 | MtrunA17_Chr8g0379581 | 49.772 | 219 | 106 | 1 | 1 | 215 | 1 | 219 | 4.55e-71 | 216 |
| Msa0379550 | MtrunA17_Chr7g0240691 | 48.416 | 221 | 111 | 2 | 4 | 222 | 36 | 255 | 4.75e-71 | 217 |
| Msa0379550 | MtrunA17_Chr7g0240681 | 47.273 | 220 | 113 | 2 | 4 | 221 | 6 | 224 | 2.90e-70 | 214 |
| Msa0379550 | MtrunA17_Chr4g0008791 | 46.222 | 225 | 117 | 3 | 1 | 222 | 1 | 224 | 2.94e-70 | 214 |
| Msa0379550 | MtrunA17_Chr7g0240581 | 50.228 | 219 | 107 | 2 | 4 | 221 | 6 | 223 | 5.90e-70 | 213 |
| Msa0379550 | MtrunA17_Chr6g0483141 | 51.042 | 192 | 94 | 0 | 19 | 210 | 17 | 208 | 1.04e-69 | 213 |
| Msa0379550 | MtrunA17_Chr7g0240641 | 48.182 | 220 | 112 | 2 | 4 | 222 | 6 | 224 | 7.08e-69 | 210 |
| Msa0379550 | MtrunA17_Chr7g0240561 | 46.847 | 222 | 116 | 2 | 1 | 221 | 3 | 223 | 2.95e-68 | 209 |
| Msa0379550 | MtrunA17_Chr1g0196771 | 45.045 | 222 | 119 | 2 | 4 | 223 | 2 | 222 | 7.78e-68 | 207 |
| Msa0379550 | MtrunA17_Chr8g0379561 | 46.635 | 208 | 111 | 0 | 1 | 208 | 2 | 209 | 1.06e-66 | 205 |
| Msa0379550 | MtrunA17_Chr7g0240611 | 48.182 | 220 | 108 | 3 | 4 | 222 | 6 | 220 | 6.96e-66 | 202 |
| Msa0379550 | MtrunA17_Chr1g0212301 | 49.048 | 210 | 100 | 3 | 6 | 210 | 4 | 211 | 1.54e-65 | 202 |
| Msa0379550 | MtrunA17_Chr1g0196661 | 48.309 | 207 | 101 | 4 | 6 | 208 | 4 | 208 | 2.13e-65 | 201 |
| Msa0379550 | MtrunA17_Chr7g0240551 | 47.867 | 211 | 108 | 2 | 4 | 213 | 6 | 215 | 3.63e-65 | 201 |
| Msa0379550 | MtrunA17_Chr7g0240541 | 48.815 | 211 | 106 | 2 | 4 | 213 | 6 | 215 | 2.16e-64 | 199 |
| Msa0379550 | MtrunA17_Chr1g0196691 | 43.891 | 221 | 119 | 3 | 6 | 222 | 29 | 248 | 2.06e-63 | 197 |
| Msa0379550 | MtrunA17_Chr7g0240531 | 47.664 | 214 | 106 | 3 | 4 | 216 | 6 | 214 | 4.20e-62 | 193 |
| Msa0379550 | MtrunA17_Chr1g0196721 | 43.891 | 221 | 117 | 4 | 5 | 220 | 2 | 220 | 9.14e-62 | 192 |
| Msa0379550 | MtrunA17_Chr7g0240671 | 49.010 | 202 | 97 | 3 | 6 | 206 | 5 | 201 | 1.38e-61 | 192 |
| Msa0379550 | MtrunA17_Chr5g0417011 | 44.651 | 215 | 113 | 2 | 6 | 214 | 8 | 222 | 1.73e-61 | 191 |
| Msa0379550 | MtrunA17_Chr7g0240511 | 47.032 | 219 | 109 | 3 | 4 | 221 | 6 | 218 | 2.03e-61 | 191 |
| Msa0379550 | MtrunA17_Chr4g0029341 | 46.047 | 215 | 112 | 3 | 3 | 214 | 2 | 215 | 4.75e-61 | 190 |
| Msa0379550 | MtrunA17_Chr7g0240521 | 47.059 | 221 | 112 | 3 | 4 | 223 | 13 | 229 | 2.27e-60 | 189 |
| Msa0379550 | MtrunA17_Chr7g0240651 | 47.273 | 220 | 110 | 3 | 4 | 222 | 6 | 220 | 2.02e-57 | 181 |
| Msa0379550 | MtrunA17_Chr1g0196711 | 43.519 | 216 | 114 | 4 | 6 | 218 | 4 | 214 | 3.27e-57 | 181 |
| Msa0379550 | MtrunA17_Chr2g0312771 | 44.175 | 206 | 112 | 2 | 3 | 207 | 2 | 205 | 4.26e-56 | 177 |
| Msa0379550 | MtrunA17_Chr2g0312751 | 43.689 | 206 | 113 | 2 | 3 | 207 | 2 | 205 | 5.01e-56 | 177 |
| Msa0379550 | MtrunA17_Chr7g0240661 | 49.510 | 204 | 97 | 3 | 4 | 206 | 6 | 204 | 1.27e-55 | 177 |
| Msa0379550 | MtrunA17_Chr5g0415411 | 41.150 | 226 | 125 | 3 | 1 | 218 | 1 | 226 | 1.14e-52 | 169 |
| Msa0379550 | MtrunA17_Chr2g0312781 | 41.262 | 206 | 118 | 2 | 3 | 207 | 19 | 222 | 8.93e-52 | 167 |
| Msa0379550 | MtrunA17_Chr2g0312791 | 43.810 | 210 | 113 | 5 | 3 | 209 | 2 | 209 | 6.27e-51 | 164 |
| Msa0379550 | MtrunA17_Chr2g0312721 | 38.532 | 218 | 128 | 3 | 3 | 216 | 2 | 217 | 7.10e-51 | 164 |
| Msa0379550 | MtrunA17_Chr8g0363751 | 41.256 | 223 | 123 | 3 | 1 | 215 | 1 | 223 | 1.29e-50 | 164 |
| Msa0379550 | MtrunA17_Chr2g0312811 | 40.000 | 220 | 125 | 5 | 3 | 218 | 2 | 218 | 1.81e-50 | 163 |
| Msa0379550 | MtrunA17_Chr2g0312731 | 40.291 | 206 | 120 | 3 | 3 | 207 | 2 | 205 | 2.00e-49 | 160 |
| Msa0379550 | MtrunA17_Chr4g0069471 | 49.727 | 183 | 85 | 6 | 4 | 182 | 24 | 203 | 2.74e-46 | 152 |
| Msa0379550 | MtrunA17_Chr2g0312681 | 37.327 | 217 | 133 | 3 | 3 | 218 | 2 | 216 | 2.04e-45 | 150 |
| Msa0379550 | MtrunA17_Chr3g0107731 | 45.556 | 180 | 96 | 2 | 2 | 180 | 6 | 184 | 2.74e-45 | 150 |
| Msa0379550 | MtrunA17_Chr3g0107741 | 47.561 | 164 | 85 | 1 | 1 | 163 | 5 | 168 | 5.02e-45 | 149 |
| Msa0379550 | MtrunA17_Chr8g0357241 | 47.531 | 162 | 84 | 1 | 3 | 163 | 2 | 163 | 3.51e-44 | 147 |
| Msa0379550 | MtrunA17_Chr8g0357211 | 46.914 | 162 | 85 | 1 | 3 | 163 | 2 | 163 | 7.55e-44 | 146 |
| Msa0379550 | MtrunA17_Chr5g0433801 | 37.037 | 216 | 133 | 2 | 3 | 217 | 4 | 217 | 8.86e-41 | 139 |
| Msa0379550 | MtrunA17_Chr2g0312691 | 37.788 | 217 | 132 | 3 | 3 | 218 | 2 | 216 | 3.75e-40 | 137 |
| Msa0379550 | MtrunA17_Chr8g0391631 | 43.396 | 159 | 82 | 3 | 1 | 151 | 17 | 175 | 1.32e-38 | 131 |
| Msa0379550 | MtrunA17_Chr2g0312711 | 37.788 | 217 | 131 | 4 | 3 | 218 | 2 | 215 | 3.89e-37 | 129 |
| Msa0379550 | MtrunA17_Chr2g0313561 | 50.000 | 58 | 28 | 1 | 49 | 105 | 2 | 59 | 2.85e-17 | 73.6 |
| Msa0379550 | MtrunA17_Chr5g0415421 | 39.726 | 73 | 41 | 1 | 29 | 98 | 11 | 83 | 9.94e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379550 | AT2G29420.1 | 43.891 | 221 | 124 | 0 | 3 | 223 | 7 | 227 | 3.26e-67 | 206 |
| Msa0379550 | AT3G09270.1 | 46.818 | 220 | 115 | 2 | 4 | 221 | 5 | 224 | 3.38e-67 | 206 |
| Msa0379550 | AT2G29460.1 | 44.749 | 219 | 120 | 1 | 4 | 221 | 6 | 224 | 2.61e-63 | 196 |
| Msa0379550 | AT2G29480.1 | 45.238 | 210 | 114 | 1 | 4 | 212 | 6 | 215 | 5.31e-62 | 193 |
| Msa0379550 | AT2G29490.1 | 42.009 | 219 | 126 | 1 | 4 | 221 | 6 | 224 | 3.50e-60 | 189 |
| Msa0379550 | AT2G29470.1 | 43.541 | 209 | 116 | 2 | 4 | 210 | 6 | 214 | 7.50e-59 | 185 |
| Msa0379550 | AT2G29450.1 | 41.818 | 220 | 126 | 2 | 4 | 221 | 5 | 224 | 9.67e-58 | 182 |
| Msa0379550 | AT2G29440.1 | 40.000 | 220 | 131 | 1 | 3 | 221 | 4 | 223 | 1.30e-57 | 182 |
| Msa0379550 | AT1G10370.1 | 41.364 | 220 | 120 | 4 | 1 | 212 | 1 | 219 | 5.99e-53 | 170 |
| Msa0379550 | AT1G78370.1 | 43.333 | 210 | 116 | 3 | 8 | 216 | 7 | 214 | 1.17e-52 | 169 |
| Msa0379550 | AT1G78340.1 | 45.977 | 174 | 93 | 1 | 3 | 175 | 2 | 175 | 7.53e-52 | 167 |
| Msa0379550 | AT1G78320.1 | 40.553 | 217 | 124 | 4 | 4 | 218 | 3 | 216 | 1.76e-51 | 166 |
| Msa0379550 | AT5G62480.1 | 38.053 | 226 | 131 | 2 | 4 | 220 | 7 | 232 | 2.10e-50 | 164 |
| Msa0379550 | AT1G78380.1 | 40.465 | 215 | 125 | 3 | 3 | 216 | 2 | 214 | 7.61e-50 | 162 |
| Msa0379550 | AT1G17170.1 | 43.478 | 207 | 113 | 4 | 3 | 208 | 2 | 205 | 9.79e-50 | 162 |
| Msa0379550 | AT1G74590.1 | 38.767 | 227 | 126 | 4 | 6 | 223 | 8 | 230 | 1.24e-49 | 162 |
| Msa0379550 | AT1G59670.1 | 40.455 | 220 | 123 | 4 | 4 | 215 | 5 | 224 | 2.47e-48 | 159 |
| Msa0379550 | AT1G17190.1 | 39.631 | 217 | 128 | 3 | 1 | 216 | 1 | 215 | 4.85e-48 | 157 |
| Msa0379550 | AT1G59700.1 | 42.523 | 214 | 115 | 4 | 4 | 209 | 5 | 218 | 4.97e-48 | 158 |
| Msa0379550 | AT1G10360.1 | 36.530 | 219 | 132 | 3 | 1 | 212 | 1 | 219 | 1.09e-47 | 157 |
| Msa0379550 | AT1G17180.1 | 39.908 | 218 | 126 | 4 | 3 | 218 | 2 | 216 | 9.80e-47 | 154 |
| Msa0379550 | AT1G69930.1 | 40.376 | 213 | 121 | 3 | 6 | 212 | 13 | 225 | 2.44e-46 | 154 |
| Msa0379550 | AT3G43800.1 | 39.640 | 222 | 127 | 4 | 1 | 217 | 1 | 220 | 7.88e-45 | 149 |
| Msa0379550 | AT1G27130.1 | 39.450 | 218 | 124 | 4 | 3 | 212 | 4 | 221 | 9.99e-45 | 149 |
| Msa0379550 | AT1G53680.1 | 45.238 | 168 | 89 | 2 | 6 | 170 | 8 | 175 | 1.32e-42 | 144 |
| Msa0379550 | AT1G78360.1 | 47.500 | 160 | 81 | 3 | 6 | 162 | 5 | 164 | 1.87e-42 | 143 |
| Msa0379550 | AT1G69920.1 | 38.889 | 216 | 124 | 4 | 5 | 212 | 34 | 249 | 1.84e-40 | 139 |
| Msa0379550 | AT1G27140.1 | 37.037 | 216 | 127 | 4 | 3 | 209 | 4 | 219 | 9.53e-38 | 132 |
| Msa0379550 | AT1G78320.2 | 34.722 | 216 | 111 | 4 | 4 | 218 | 3 | 189 | 2.04e-35 | 124 |
| Msa0379550 | AT5G62480.2 | 31.111 | 225 | 122 | 2 | 4 | 220 | 7 | 206 | 1.02e-33 | 120 |
| Msa0379550 | AT5G62480.3 | 31.111 | 225 | 121 | 2 | 4 | 220 | 7 | 205 | 1.24e-33 | 120 |
Find 71 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCACGTTACTAGGGTTC+TGG | 0.230426 | 3_1:-80729568 | Msa0379550:CDS |
| AGAGGGCCAAGGCGCGATTT+TGG | 0.235373 | 3_1:-80729310 | Msa0379550:CDS |
| CTTGATATTATAGTATTCTA+TGG | 0.251887 | 3_1:+80728284 | Msa0379540:intron |
| TAAAATCTTCTTCAACATAT+TGG | 0.276929 | 3_1:+80729489 | Msa0379540:three_prime_UTR |
| TCGCGCCTTGGCCCTCTCAT+AGG | 0.290203 | 3_1:+80729316 | Msa0379540:three_prime_UTR |
| AAGTGGGCTCTTGAACTAAA+AGG | 0.296086 | 3_1:-80729521 | Msa0379550:CDS |
| ATTAACATATTGCATGATAT+TGG | 0.298727 | 3_1:+80728481 | Msa0379540:intron |
| TGATGTGTGTGTATGATATA+TGG | 0.313334 | 3_1:-80728514 | Msa0379550:three_prime_UTR |
| GGAGACTCACTCACGTTACT+AGG | 0.328682 | 3_1:-80729575 | Msa0379550:CDS |
| GAGCTCAGGTTCGTGTTTAT+AGG | 0.355178 | 3_1:+80728413 | Msa0379540:intron |
| GACATCTTCATCAGCTTAAG+AGG | 0.360365 | 3_1:-80728596 | Msa0379550:exon |
| GGCGTGCATTCTTTGATAAC+AGG | 0.364374 | 3_1:+80728667 | Msa0379540:three_prime_UTR |
| TGTGTTTACATGATTAGTTT+AGG | 0.367219 | 3_1:+80728387 | Msa0379540:intron |
| AATCACTAGTGATTCTGATA+TGG | 0.369693 | 3_1:+80729391 | Msa0379540:three_prime_UTR |
| ACAGGTACCTTCTTATAAAC+AGG | 0.378107 | 3_1:+80729434 | Msa0379540:three_prime_UTR |
| GGCTTTGCTGATATTGCTGT+TGG | 0.390337 | 3_1:-80728799 | Msa0379550:CDS |
| TTCCCTCAAGTCCACTTTCA+AGG | 0.391350 | 3_1:+80728848 | Msa0379540:three_prime_UTR |
| CACTTGACCCTCAGGACAAA+TGG | 0.402811 | 3_1:+80729539 | Msa0379540:three_prime_UTR |
| GGCTAAATTCGCCGATGATA+AGG | 0.406052 | 3_1:-80729288 | Msa0379550:intron |
| ATCCTTGAAAGTGGACTTGA+GGG | 0.416245 | 3_1:-80728850 | Msa0379550:CDS |
| CCATGGACTCTGTATCAATC+AGG | 0.416951 | 3_1:+80728728 | Msa0379540:three_prime_UTR |
| CTTGAGGGAAGGCGCTACTT+TGG | 0.416974 | 3_1:-80728835 | Msa0379550:CDS |
| TAGAGTATGTTGATGAGATC+TGG | 0.424571 | 3_1:-80729367 | Msa0379550:CDS |
| TTGATATTATAGTATTCTAT+GGG | 0.439636 | 3_1:+80728285 | Msa0379540:intron |
| TACTTTGGAGGTGAAAATAT+AGG | 0.440103 | 3_1:-80728820 | Msa0379550:CDS |
| ATAACATTTGTTAGAGAACT+AGG | 0.446766 | 3_1:-80729639 | Msa0379550:five_prime_UTR |
| TATAACATATTGTATTGTAT+AGG | 0.463518 | 3_1:+80728563 | Msa0379540:intron |
| TTACCGTCATGCACAAGAAC+AGG | 0.465185 | 3_1:+80729416 | Msa0379540:three_prime_UTR |
| CATAGAATACTATAATATCA+AGG | 0.468017 | 3_1:-80728283 | Msa0379550:three_prime_UTR |
| CGCGCCTTGGCCCTCTCATA+GGG | 0.469964 | 3_1:+80729317 | Msa0379540:three_prime_UTR |
| AGTGGGCTCTTGAACTAAAA+GGG | 0.471204 | 3_1:-80729520 | Msa0379550:CDS |
| ACTCACGTTACTAGGGTTCT+GGG | 0.475091 | 3_1:-80729567 | Msa0379550:CDS |
| GAGGGAAGGCGCTACTTTGG+AGG | 0.487384 | 3_1:-80728832 | Msa0379550:CDS |
| GATGTGTGTGTATGATATAT+GGG | 0.488055 | 3_1:-80728513 | Msa0379550:three_prime_UTR |
| GCTTTGCTGATATTGCTGTT+GGG | 0.489214 | 3_1:-80728798 | Msa0379550:CDS |
| CAAGAGCCCACTTGACCCTC+AGG | 0.492284 | 3_1:+80729531 | Msa0379540:three_prime_UTR |
| ATTAGTTTAGGTTTGAGCTC+AGG | 0.493653 | 3_1:+80728399 | Msa0379540:intron |
| TAACGTCTTGATTAAATAAG+CGG | 0.496299 | 3_1:+80728313 | Msa0379540:intron |
| GGGTAGTCCATTTGTCCTGA+GGG | 0.524592 | 3_1:-80729546 | Msa0379550:CDS |
| CCTGATTGATACAGAGTCCA+TGG | 0.533258 | 3_1:-80728728 | Msa0379550:CDS |
| AATTTGAAGATCCTTGAAAG+TGG | 0.535582 | 3_1:-80728859 | Msa0379550:CDS |
| GGGGTAGTCCATTTGTCCTG+AGG | 0.544193 | 3_1:-80729547 | Msa0379550:CDS |
| GTATAATCCTGTTTATAAGA+AGG | 0.544339 | 3_1:-80729441 | Msa0379550:CDS |
| TTTAGCCCAAAATCGCGCCT+TGG | 0.545817 | 3_1:+80729304 | Msa0379540:three_prime_UTR |
| AAGAAAGTCATCGAAGTAAG+TGG | 0.546614 | 3_1:+80728696 | Msa0379540:three_prime_UTR |
| CATTTGTCCTGAGGGTCAAG+TGG | 0.551709 | 3_1:-80729538 | Msa0379550:CDS |
| AACTAGGAATGAGAAAGAGC+AGG | 0.568013 | 3_1:-80729623 | Msa0379550:five_prime_UTR |
| ATTTGTCCTGAGGGTCAAGT+GGG | 0.573803 | 3_1:-80729537 | Msa0379550:CDS |
| GCCCTCTCATAGGGATCATG+TGG | 0.575393 | 3_1:+80729326 | Msa0379540:three_prime_UTR |
| TAGGGATCATGTGGAAGAAG+AGG | 0.575719 | 3_1:+80729335 | Msa0379540:three_prime_UTR |
| GAGACTCACTCACGTTACTA+GGG | 0.583299 | 3_1:-80729574 | Msa0379550:CDS |
| GATCCTTGAAAGTGGACTTG+AGG | 0.587591 | 3_1:-80728851 | Msa0379550:CDS |
| GTAAGTGGTAAGTTTAGCCA+TGG | 0.594981 | 3_1:+80728711 | Msa0379540:three_prime_UTR |
| AATAGGAGAGGAACAACAGA+AGG | 0.601970 | 3_1:-80728902 | Msa0379550:CDS |
| ATAGAATACTATAATATCAA+GGG | 0.602332 | 3_1:-80728282 | Msa0379550:three_prime_UTR |
| TCCACATGATCCCTATGAGA+GGG | 0.621697 | 3_1:-80729327 | Msa0379550:CDS |
| ATGAAGATGTCAAGACCTTG+TGG | 0.622264 | 3_1:+80728608 | Msa0379540:three_prime_UTR |
| CATATTGTATTGTATAGGTG+TGG | 0.627030 | 3_1:+80728568 | Msa0379540:intron |
| GTGGGCTCTTGAACTAAAAG+GGG | 0.630143 | 3_1:-80729519 | Msa0379550:CDS |
| TTCCACATGATCCCTATGAG+AGG | 0.630417 | 3_1:-80729328 | Msa0379550:CDS |
| TTGAAAGTGGACTTGAGGGA+AGG | 0.636293 | 3_1:-80728846 | Msa0379550:CDS |
| GCACAGCAAGGCCTTCCACA+AGG | 0.644456 | 3_1:-80728623 | Msa0379550:CDS |
| AGATGTCAAGACCTTGTGGA+AGG | 0.645290 | 3_1:+80728612 | Msa0379540:three_prime_UTR |
| CTCACGTTACTAGGGTTCTG+GGG | 0.648274 | 3_1:-80729566 | Msa0379550:CDS |
| TCAAGTAACTTATCATGAGA+CGG | 0.652385 | 3_1:+80728646 | Msa0379540:three_prime_UTR |
| TGATCCCTATGAGAGGGCCA+AGG | 0.658261 | 3_1:-80729321 | Msa0379550:CDS |
| TAAGTTACTTGAGCACAGCA+AGG | 0.675812 | 3_1:-80728635 | Msa0379550:CDS |
| TGATATTATAGTATTCTATG+GGG | 0.676578 | 3_1:+80728286 | Msa0379540:intron |
| GTACCTGTTCTTGTGCATGA+CGG | 0.690851 | 3_1:-80729419 | Msa0379550:CDS |
| CGAGTGATAGAAGAAACTGT+AGG | 0.708991 | 3_1:-80728757 | Msa0379550:CDS |
| TGTGTGTATGATAATATGCG+TGG | 0.738199 | 3_1:-80728443 | Msa0379550:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACATATTGTATTGTAT+AGG | + | chr3_1:80729346-80729365 | Msa0379540:three_prime_UTR | 15.0% |
| !!! | TCTTGTAAAAGTAATTTTAA+TGG | - | chr3_1:80729566-80729585 | Msa0379550:CDS | 15.0% |
| !!! | CTTGTAAAAGTAATTTTAAT+GGG | - | chr3_1:80729567-80729586 | Msa0379550:CDS | 15.0% |
| !! | TTGATATTATAGTATTCTAT+GGG | + | chr3_1:80729624-80729643 | Msa0379540:three_prime_UTR | 15.0% |
| !! | ATAGAATACTATAATATCAA+GGG | - | chr3_1:80729624-80729643 | Msa0379550:five_prime_UTR | 15.0% |
| !! | TATAACATATTGTATTGTAT+AGG | + | chr3_1:80729346-80729365 | Msa0379540:three_prime_UTR | 15.0% |
| !!! | TCTTGTAAAAGTAATTTTAA+TGG | - | chr3_1:80729566-80729585 | Msa0379550:CDS | 15.0% |
| !!! | CTTGTAAAAGTAATTTTAAT+GGG | - | chr3_1:80729567-80729586 | Msa0379550:CDS | 15.0% |
| !! | TTGATATTATAGTATTCTAT+GGG | + | chr3_1:80729624-80729643 | Msa0379540:three_prime_UTR | 15.0% |
| !! | ATAGAATACTATAATATCAA+GGG | - | chr3_1:80729624-80729643 | Msa0379550:five_prime_UTR | 15.0% |
| !! | TGTTTGATTAAAAGCAAAAA+TGG | - | chr3_1:80728306-80728325 | Msa0379550:three_prime_UTR | 20.0% |
| !! | TAAAATCTTCTTCAACATAT+TGG | + | chr3_1:80728420-80728439 | Msa0379540:intron | 20.0% |
| !!! | AATATGTTGAAGAAGATTTT+AGG | - | chr3_1:80728419-80728438 | Msa0379550:three_prime_UTR | 20.0% |
| !!! | CTTTTGAGTAATAGTTTAAT+TGG | + | chr3_1:80728801-80728820 | Msa0379540:three_prime_UTR | 20.0% |
| !! | ATTAACATATTGCATGATAT+TGG | + | chr3_1:80729428-80729447 | Msa0379540:three_prime_UTR | 20.0% |
| !! | TGATATTATAGTATTCTATG+GGG | + | chr3_1:80729623-80729642 | Msa0379540:three_prime_UTR | 20.0% |
| !! | CTTGATATTATAGTATTCTA+TGG | + | chr3_1:80729625-80729644 | Msa0379540:three_prime_UTR | 20.0% |
| !! | CATAGAATACTATAATATCA+AGG | - | chr3_1:80729623-80729642 | Msa0379550:five_prime_UTR | 20.0% |
| !! | TGTTTGATTAAAAGCAAAAA+TGG | - | chr3_1:80728306-80728325 | Msa0379550:three_prime_UTR | 20.0% |
| !! | TAAAATCTTCTTCAACATAT+TGG | + | chr3_1:80728420-80728439 | Msa0379540:intron | 20.0% |
| !!! | AATATGTTGAAGAAGATTTT+AGG | - | chr3_1:80728419-80728438 | Msa0379550:three_prime_UTR | 20.0% |
| !!! | CTTTTGAGTAATAGTTTAAT+TGG | + | chr3_1:80728801-80728820 | Msa0379540:three_prime_UTR | 20.0% |
| !! | ATTAACATATTGCATGATAT+TGG | + | chr3_1:80729428-80729447 | Msa0379540:three_prime_UTR | 20.0% |
| !! | TGATATTATAGTATTCTATG+GGG | + | chr3_1:80729623-80729642 | Msa0379540:three_prime_UTR | 20.0% |
| !! | CTTGATATTATAGTATTCTA+TGG | + | chr3_1:80729625-80729644 | Msa0379540:three_prime_UTR | 20.0% |
| !! | CATAGAATACTATAATATCA+AGG | - | chr3_1:80729623-80729642 | Msa0379550:five_prime_UTR | 20.0% |
| !! | ATAACATTTGTTAGAGAACT+AGG | - | chr3_1:80728267-80728286 | Msa0379550:three_prime_UTR | 25.0% |
| ! | GTATAATCCTGTTTATAAGA+AGG | - | chr3_1:80728465-80728484 | Msa0379550:three_prime_UTR | 25.0% |
| !!! | ATAGCTACCTTTTTCAAAAT+AGG | - | chr3_1:80728987-80729006 | Msa0379550:intron | 25.0% |
| !!! | TGTGTTTACATGATTAGTTT+AGG | + | chr3_1:80729522-80729541 | Msa0379540:three_prime_UTR | 25.0% |
| ! | TAACGTCTTGATTAAATAAG+CGG | + | chr3_1:80729596-80729615 | Msa0379540:three_prime_UTR | 25.0% |
| ! | TAGTTCTCTAACAAATGTTA+TGG | + | chr3_1:80728268-80728287 | Msa0379540:intron | 25.0% |
| !! | ATAACATTTGTTAGAGAACT+AGG | - | chr3_1:80728267-80728286 | Msa0379550:three_prime_UTR | 25.0% |
| ! | GTATAATCCTGTTTATAAGA+AGG | - | chr3_1:80728465-80728484 | Msa0379550:three_prime_UTR | 25.0% |
| !!! | ATAGCTACCTTTTTCAAAAT+AGG | - | chr3_1:80728987-80729006 | Msa0379550:intron | 25.0% |
| !!! | TGTGTTTACATGATTAGTTT+AGG | + | chr3_1:80729522-80729541 | Msa0379540:three_prime_UTR | 25.0% |
| ! | TAACGTCTTGATTAAATAAG+CGG | + | chr3_1:80729596-80729615 | Msa0379540:three_prime_UTR | 25.0% |
| TGATTAAAAGCAAAAATGGC+AGG | - | chr3_1:80728310-80728329 | Msa0379550:three_prime_UTR | 30.0% | |
| AATCACTAGTGATTCTGATA+TGG | + | chr3_1:80728518-80728537 | Msa0379540:intron | 30.0% | |
| ! | TGGCTTTTATACCTTATCAT+CGG | + | chr3_1:80728632-80728651 | Msa0379540:three_prime_UTR | 30.0% |
| ! | ATCATGTTCTTTAGAAGTCA+TGG | + | chr3_1:80728652-80728671 | Msa0379540:three_prime_UTR | 30.0% |
| !!! | AAGGTTGGTTTTTGTATTAG+AGG | + | chr3_1:80728941-80728960 | Msa0379540:intron | 30.0% |
| AAAAAGGTAGCTATAAATGC+TGG | + | chr3_1:80728981-80729000 | Msa0379540:intron | 30.0% | |
| !!! | TACCTTTTTCAAAATAGGAG+AGG | - | chr3_1:80728992-80729011 | Msa0379550:intron | 30.0% |
| !! | TTCCTCTCCTATTTTGAAAA+AGG | + | chr3_1:80728997-80729016 | Msa0379540:intron | 30.0% |
| AATTTGAAGATCCTTGAAAG+TGG | - | chr3_1:80729047-80729066 | Msa0379550:intron | 30.0% | |
| ! | TACTTTGGAGGTGAAAATAT+AGG | - | chr3_1:80729086-80729105 | Msa0379550:intron | 30.0% |
| TCAAGTAACTTATCATGAGA+CGG | + | chr3_1:80729263-80729282 | Msa0379540:intron | 30.0% | |
| CATATTGTATTGTATAGGTG+TGG | + | chr3_1:80729341-80729360 | Msa0379540:three_prime_UTR | 30.0% | |
| TGATGTGTGTGTATGATATA+TGG | - | chr3_1:80729392-80729411 | Msa0379550:CDS | 30.0% | |
| GATGTGTGTGTATGATATAT+GGG | - | chr3_1:80729393-80729412 | Msa0379550:CDS | 30.0% | |
| TGATTAAAAGCAAAAATGGC+AGG | - | chr3_1:80728310-80728329 | Msa0379550:three_prime_UTR | 30.0% | |
| AATCACTAGTGATTCTGATA+TGG | + | chr3_1:80728518-80728537 | Msa0379540:intron | 30.0% | |
| ! | TGGCTTTTATACCTTATCAT+CGG | + | chr3_1:80728632-80728651 | Msa0379540:three_prime_UTR | 30.0% |
| ! | ATCATGTTCTTTAGAAGTCA+TGG | + | chr3_1:80728652-80728671 | Msa0379540:three_prime_UTR | 30.0% |
| !!! | AAGGTTGGTTTTTGTATTAG+AGG | + | chr3_1:80728941-80728960 | Msa0379540:intron | 30.0% |
| AAAAAGGTAGCTATAAATGC+TGG | + | chr3_1:80728981-80729000 | Msa0379540:intron | 30.0% | |
| !!! | TACCTTTTTCAAAATAGGAG+AGG | - | chr3_1:80728992-80729011 | Msa0379550:intron | 30.0% |
| !! | TTCCTCTCCTATTTTGAAAA+AGG | + | chr3_1:80728997-80729016 | Msa0379540:intron | 30.0% |
| AATTTGAAGATCCTTGAAAG+TGG | - | chr3_1:80729047-80729066 | Msa0379550:intron | 30.0% | |
| ! | TACTTTGGAGGTGAAAATAT+AGG | - | chr3_1:80729086-80729105 | Msa0379550:intron | 30.0% |
| TCAAGTAACTTATCATGAGA+CGG | + | chr3_1:80729263-80729282 | Msa0379540:intron | 30.0% | |
| CATATTGTATTGTATAGGTG+TGG | + | chr3_1:80729341-80729360 | Msa0379540:three_prime_UTR | 30.0% | |
| TGATGTGTGTGTATGATATA+TGG | - | chr3_1:80729392-80729411 | Msa0379550:CDS | 30.0% | |
| GATGTGTGTGTATGATATAT+GGG | - | chr3_1:80729393-80729412 | Msa0379550:CDS | 30.0% | |
| ACAGGTACCTTCTTATAAAC+AGG | + | chr3_1:80728475-80728494 | Msa0379540:intron | 35.0% | |
| ! | TAGAGTATGTTGATGAGATC+TGG | - | chr3_1:80728539-80728558 | Msa0379550:three_prime_UTR | 35.0% |
| GATCAAACCAAACATCAAGT+TGG | + | chr3_1:80728708-80728727 | Msa0379540:three_prime_UTR | 35.0% | |
| !! | TTGGTTTTTGTATTAGAGGC+TGG | + | chr3_1:80728937-80728956 | Msa0379540:three_prime_UTR | 35.0% |
| CACACTGAAATAGAAAAGGT+TGG | + | chr3_1:80728956-80728975 | Msa0379540:intron | 35.0% | |
| !!! | GATATTGCTGTTGGGTTTTT+TGG | - | chr3_1:80729116-80729135 | Msa0379550:intron | 35.0% |
| !!! | TGTTGGGTTTTTTGGATTCT+GGG | - | chr3_1:80729124-80729143 | Msa0379550:intron | 35.0% |
| AAGAAAGTCATCGAAGTAAG+TGG | + | chr3_1:80729213-80729232 | Msa0379540:intron | 35.0% | |
| TGTGTGTATGATAATATGCG+TGG | - | chr3_1:80729463-80729482 | Msa0379550:CDS | 35.0% | |
| ! | ATTAGTTTAGGTTTGAGCTC+AGG | + | chr3_1:80729510-80729529 | Msa0379540:three_prime_UTR | 35.0% |
| ACAGGTACCTTCTTATAAAC+AGG | + | chr3_1:80728475-80728494 | Msa0379540:intron | 35.0% | |
| ! | TAGAGTATGTTGATGAGATC+TGG | - | chr3_1:80728539-80728558 | Msa0379550:three_prime_UTR | 35.0% |
| GATCAAACCAAACATCAAGT+TGG | + | chr3_1:80728708-80728727 | Msa0379540:three_prime_UTR | 35.0% | |
| !! | TTGGTTTTTGTATTAGAGGC+TGG | + | chr3_1:80728937-80728956 | Msa0379540:three_prime_UTR | 35.0% |
| CACACTGAAATAGAAAAGGT+TGG | + | chr3_1:80728956-80728975 | Msa0379540:intron | 35.0% | |
| !!! | GATATTGCTGTTGGGTTTTT+TGG | - | chr3_1:80729116-80729135 | Msa0379550:intron | 35.0% |
| !!! | TGTTGGGTTTTTTGGATTCT+GGG | - | chr3_1:80729124-80729143 | Msa0379550:intron | 35.0% |
| AAGAAAGTCATCGAAGTAAG+TGG | + | chr3_1:80729213-80729232 | Msa0379540:intron | 35.0% | |
| TGTGTGTATGATAATATGCG+TGG | - | chr3_1:80729463-80729482 | Msa0379550:CDS | 35.0% | |
| ! | ATTAGTTTAGGTTTGAGCTC+AGG | + | chr3_1:80729510-80729529 | Msa0379540:three_prime_UTR | 35.0% |
| AACTAGGAATGAGAAAGAGC+AGG | - | chr3_1:80728283-80728302 | Msa0379550:three_prime_UTR | 40.0% | |
| ! | AAGTGGGCTCTTGAACTAAA+AGG | - | chr3_1:80728385-80728404 | Msa0379550:three_prime_UTR | 40.0% |
| ! | AGTGGGCTCTTGAACTAAAA+GGG | - | chr3_1:80728386-80728405 | Msa0379550:three_prime_UTR | 40.0% |
| AAGAACATGATCAAACCGTC+TGG | - | chr3_1:80728661-80728680 | Msa0379550:CDS | 40.0% | |
| ! | ATCAAACCGTCTGGTTCAAA+TGG | - | chr3_1:80728670-80728689 | Msa0379550:CDS | 40.0% |
| GTTCAACCATTTGAACCAGA+CGG | + | chr3_1:80728679-80728698 | Msa0379540:three_prime_UTR | 40.0% | |
| !! | CCAAACATCAAGTTGGTTTC+TGG | + | chr3_1:80728701-80728720 | Msa0379540:three_prime_UTR | 40.0% |
| CCAGAAACCAACTTGATGTT+TGG | - | chr3_1:80728698-80728717 | Msa0379550:CDS | 40.0% | |
| AGTCTCAACATTTCGATCTC+TGG | - | chr3_1:80728819-80728838 | Msa0379550:CDS | 40.0% | |
| GGCACACACTGAAATAGAAA+AGG | + | chr3_1:80728960-80728979 | Msa0379540:intron | 40.0% | |
| AATAGGAGAGGAACAACAGA+AGG | - | chr3_1:80729004-80729023 | Msa0379550:intron | 40.0% | |
| ! | ATCCTTGAAAGTGGACTTGA+GGG | - | chr3_1:80729056-80729075 | Msa0379550:intron | 40.0% |
| ! | GCTTTGCTGATATTGCTGTT+GGG | - | chr3_1:80729108-80729127 | Msa0379550:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGGATTC+TGG | - | chr3_1:80729123-80729142 | Msa0379550:intron | 40.0% |
| CGAGTGATAGAAGAAACTGT+AGG | - | chr3_1:80729149-80729168 | Msa0379550:intron | 40.0% | |
| GTAAGTGGTAAGTTTAGCCA+TGG | + | chr3_1:80729198-80729217 | Msa0379540:intron | 40.0% | |
| TAAGTTACTTGAGCACAGCA+AGG | - | chr3_1:80729271-80729290 | Msa0379550:intron | 40.0% | |
| ATGAAGATGTCAAGACCTTG+TGG | + | chr3_1:80729301-80729320 | Msa0379540:three_prime_UTR | 40.0% | |
| GACATCTTCATCAGCTTAAG+AGG | - | chr3_1:80729310-80729329 | Msa0379550:CDS | 40.0% | |
| AACTAGGAATGAGAAAGAGC+AGG | - | chr3_1:80728283-80728302 | Msa0379550:three_prime_UTR | 40.0% | |
| ! | AAGTGGGCTCTTGAACTAAA+AGG | - | chr3_1:80728385-80728404 | Msa0379550:three_prime_UTR | 40.0% |
| ! | AGTGGGCTCTTGAACTAAAA+GGG | - | chr3_1:80728386-80728405 | Msa0379550:three_prime_UTR | 40.0% |
| AAGAACATGATCAAACCGTC+TGG | - | chr3_1:80728661-80728680 | Msa0379550:CDS | 40.0% | |
| ! | ATCAAACCGTCTGGTTCAAA+TGG | - | chr3_1:80728670-80728689 | Msa0379550:CDS | 40.0% |
| GTTCAACCATTTGAACCAGA+CGG | + | chr3_1:80728679-80728698 | Msa0379540:three_prime_UTR | 40.0% | |
| !! | CCAAACATCAAGTTGGTTTC+TGG | + | chr3_1:80728701-80728720 | Msa0379540:three_prime_UTR | 40.0% |
| CCAGAAACCAACTTGATGTT+TGG | - | chr3_1:80728698-80728717 | Msa0379550:CDS | 40.0% | |
| AGTCTCAACATTTCGATCTC+TGG | - | chr3_1:80728819-80728838 | Msa0379550:CDS | 40.0% | |
| GGCACACACTGAAATAGAAA+AGG | + | chr3_1:80728960-80728979 | Msa0379540:intron | 40.0% | |
| AATAGGAGAGGAACAACAGA+AGG | - | chr3_1:80729004-80729023 | Msa0379550:intron | 40.0% | |
| ! | ATCCTTGAAAGTGGACTTGA+GGG | - | chr3_1:80729056-80729075 | Msa0379550:intron | 40.0% |
| ! | GCTTTGCTGATATTGCTGTT+GGG | - | chr3_1:80729108-80729127 | Msa0379550:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGGATTC+TGG | - | chr3_1:80729123-80729142 | Msa0379550:intron | 40.0% |
| CGAGTGATAGAAGAAACTGT+AGG | - | chr3_1:80729149-80729168 | Msa0379550:intron | 40.0% | |
| GTAAGTGGTAAGTTTAGCCA+TGG | + | chr3_1:80729198-80729217 | Msa0379540:intron | 40.0% | |
| TAAGTTACTTGAGCACAGCA+AGG | - | chr3_1:80729271-80729290 | Msa0379550:intron | 40.0% | |
| ATGAAGATGTCAAGACCTTG+TGG | + | chr3_1:80729301-80729320 | Msa0379540:three_prime_UTR | 40.0% | |
| GACATCTTCATCAGCTTAAG+AGG | - | chr3_1:80729310-80729329 | Msa0379550:CDS | 40.0% | |
| GAGACTCACTCACGTTACTA+GGG | - | chr3_1:80728332-80728351 | Msa0379550:three_prime_UTR | 45.0% | |
| ACTCACGTTACTAGGGTTCT+GGG | - | chr3_1:80728339-80728358 | Msa0379550:three_prime_UTR | 45.0% | |
| ATTTGTCCTGAGGGTCAAGT+GGG | - | chr3_1:80728369-80728388 | Msa0379550:three_prime_UTR | 45.0% | |
| GTGGGCTCTTGAACTAAAAG+GGG | - | chr3_1:80728387-80728406 | Msa0379550:three_prime_UTR | 45.0% | |
| GTACCTGTTCTTGTGCATGA+CGG | - | chr3_1:80728487-80728506 | Msa0379550:three_prime_UTR | 45.0% | |
| TTACCGTCATGCACAAGAAC+AGG | + | chr3_1:80728493-80728512 | Msa0379540:intron | 45.0% | |
| TAGGGATCATGTGGAAGAAG+AGG | + | chr3_1:80728574-80728593 | Msa0379540:intron | 45.0% | |
| TTCCACATGATCCCTATGAG+AGG | - | chr3_1:80728578-80728597 | Msa0379550:three_prime_UTR | 45.0% | |
| TCCACATGATCCCTATGAGA+GGG | - | chr3_1:80728579-80728598 | Msa0379550:three_prime_UTR | 45.0% | |
| GGCTAAATTCGCCGATGATA+AGG | - | chr3_1:80728618-80728637 | Msa0379550:CDS | 45.0% | |
| ! | GATCCTTGAAAGTGGACTTG+AGG | - | chr3_1:80729055-80729074 | Msa0379550:intron | 45.0% |
| TTCCCTCAAGTCCACTTTCA+AGG | + | chr3_1:80729061-80729080 | Msa0379540:intron | 45.0% | |
| ! | TTGAAAGTGGACTTGAGGGA+AGG | - | chr3_1:80729060-80729079 | Msa0379550:intron | 45.0% |
| GGCTTTGCTGATATTGCTGT+TGG | - | chr3_1:80729107-80729126 | Msa0379550:intron | 45.0% | |
| CCATGGACTCTGTATCAATC+AGG | + | chr3_1:80729181-80729200 | Msa0379540:intron | 45.0% | |
| CCTGATTGATACAGAGTCCA+TGG | - | chr3_1:80729178-80729197 | Msa0379550:intron | 45.0% | |
| ! | GGCGTGCATTCTTTGATAAC+AGG | + | chr3_1:80729242-80729261 | Msa0379540:intron | 45.0% |
| AGATGTCAAGACCTTGTGGA+AGG | + | chr3_1:80729297-80729316 | Msa0379540:three_prime_UTR | 45.0% | |
| GAGCTCAGGTTCGTGTTTAT+AGG | + | chr3_1:80729496-80729515 | Msa0379540:three_prime_UTR | 45.0% | |
| GAGACTCACTCACGTTACTA+GGG | - | chr3_1:80728332-80728351 | Msa0379550:three_prime_UTR | 45.0% | |
| ACTCACGTTACTAGGGTTCT+GGG | - | chr3_1:80728339-80728358 | Msa0379550:three_prime_UTR | 45.0% | |
| ATTTGTCCTGAGGGTCAAGT+GGG | - | chr3_1:80728369-80728388 | Msa0379550:three_prime_UTR | 45.0% | |
| GTGGGCTCTTGAACTAAAAG+GGG | - | chr3_1:80728387-80728406 | Msa0379550:three_prime_UTR | 45.0% | |
| GTACCTGTTCTTGTGCATGA+CGG | - | chr3_1:80728487-80728506 | Msa0379550:three_prime_UTR | 45.0% | |
| TTACCGTCATGCACAAGAAC+AGG | + | chr3_1:80728493-80728512 | Msa0379540:intron | 45.0% | |
| TAGGGATCATGTGGAAGAAG+AGG | + | chr3_1:80728574-80728593 | Msa0379540:intron | 45.0% | |
| TTCCACATGATCCCTATGAG+AGG | - | chr3_1:80728578-80728597 | Msa0379550:three_prime_UTR | 45.0% | |
| TCCACATGATCCCTATGAGA+GGG | - | chr3_1:80728579-80728598 | Msa0379550:three_prime_UTR | 45.0% | |
| GGCTAAATTCGCCGATGATA+AGG | - | chr3_1:80728618-80728637 | Msa0379550:CDS | 45.0% | |
| ! | GATCCTTGAAAGTGGACTTG+AGG | - | chr3_1:80729055-80729074 | Msa0379550:intron | 45.0% |
| TTCCCTCAAGTCCACTTTCA+AGG | + | chr3_1:80729061-80729080 | Msa0379540:intron | 45.0% | |
| ! | TTGAAAGTGGACTTGAGGGA+AGG | - | chr3_1:80729060-80729079 | Msa0379550:intron | 45.0% |
| GGCTTTGCTGATATTGCTGT+TGG | - | chr3_1:80729107-80729126 | Msa0379550:intron | 45.0% | |
| CCATGGACTCTGTATCAATC+AGG | + | chr3_1:80729181-80729200 | Msa0379540:intron | 45.0% | |
| CCTGATTGATACAGAGTCCA+TGG | - | chr3_1:80729178-80729197 | Msa0379550:intron | 45.0% | |
| ! | GGCGTGCATTCTTTGATAAC+AGG | + | chr3_1:80729242-80729261 | Msa0379540:intron | 45.0% |
| AGATGTCAAGACCTTGTGGA+AGG | + | chr3_1:80729297-80729316 | Msa0379540:three_prime_UTR | 45.0% | |
| GAGCTCAGGTTCGTGTTTAT+AGG | + | chr3_1:80729496-80729515 | Msa0379540:three_prime_UTR | 45.0% | |
| GGAGACTCACTCACGTTACT+AGG | - | chr3_1:80728331-80728350 | Msa0379550:three_prime_UTR | 50.0% | |
| CACTCACGTTACTAGGGTTC+TGG | - | chr3_1:80728338-80728357 | Msa0379550:three_prime_UTR | 50.0% | |
| CTCACGTTACTAGGGTTCTG+GGG | - | chr3_1:80728340-80728359 | Msa0379550:three_prime_UTR | 50.0% | |
| GGGTAGTCCATTTGTCCTGA+GGG | - | chr3_1:80728360-80728379 | Msa0379550:three_prime_UTR | 50.0% | |
| CACTTGACCCTCAGGACAAA+TGG | + | chr3_1:80728370-80728389 | Msa0379540:intron | 50.0% | |
| CATTTGTCCTGAGGGTCAAG+TGG | - | chr3_1:80728368-80728387 | Msa0379550:three_prime_UTR | 50.0% | |
| TTTAGCCCAAAATCGCGCCT+TGG | + | chr3_1:80728605-80728624 | Msa0379540:three_prime_UTR | 50.0% | |
| GGAGACTCACTCACGTTACT+AGG | - | chr3_1:80728331-80728350 | Msa0379550:three_prime_UTR | 50.0% | |
| CACTCACGTTACTAGGGTTC+TGG | - | chr3_1:80728338-80728357 | Msa0379550:three_prime_UTR | 50.0% | |
| CTCACGTTACTAGGGTTCTG+GGG | - | chr3_1:80728340-80728359 | Msa0379550:three_prime_UTR | 50.0% | |
| GGGTAGTCCATTTGTCCTGA+GGG | - | chr3_1:80728360-80728379 | Msa0379550:three_prime_UTR | 50.0% | |
| CACTTGACCCTCAGGACAAA+TGG | + | chr3_1:80728370-80728389 | Msa0379540:intron | 50.0% | |
| CATTTGTCCTGAGGGTCAAG+TGG | - | chr3_1:80728368-80728387 | Msa0379550:three_prime_UTR | 50.0% | |
| TTTAGCCCAAAATCGCGCCT+TGG | + | chr3_1:80728605-80728624 | Msa0379540:three_prime_UTR | 50.0% | |
| GGGGTAGTCCATTTGTCCTG+AGG | - | chr3_1:80728359-80728378 | Msa0379550:three_prime_UTR | 55.0% | |
| GCCCTCTCATAGGGATCATG+TGG | + | chr3_1:80728583-80728602 | Msa0379540:intron | 55.0% | |
| TGATCCCTATGAGAGGGCCA+AGG | - | chr3_1:80728585-80728604 | Msa0379550:exon | 55.0% | |
| !! | CTTGAGGGAAGGCGCTACTT+TGG | - | chr3_1:80729071-80729090 | Msa0379550:intron | 55.0% |
| GGGGTAGTCCATTTGTCCTG+AGG | - | chr3_1:80728359-80728378 | Msa0379550:three_prime_UTR | 55.0% | |
| GCCCTCTCATAGGGATCATG+TGG | + | chr3_1:80728583-80728602 | Msa0379540:intron | 55.0% | |
| TGATCCCTATGAGAGGGCCA+AGG | - | chr3_1:80728585-80728604 | Msa0379550:exon | 55.0% | |
| !! | CTTGAGGGAAGGCGCTACTT+TGG | - | chr3_1:80729071-80729090 | Msa0379550:intron | 55.0% |
| CAAGAGCCCACTTGACCCTC+AGG | + | chr3_1:80728378-80728397 | Msa0379540:intron | 60.0% | |
| ! | AGAGGGCCAAGGCGCGATTT+TGG | - | chr3_1:80728596-80728615 | Msa0379550:exon | 60.0% |
| ! | GAGGGCCAAGGCGCGATTTT+GGG | - | chr3_1:80728597-80728616 | Msa0379550:exon | 60.0% |
| !! | GAGGGAAGGCGCTACTTTGG+AGG | - | chr3_1:80729074-80729093 | Msa0379550:intron | 60.0% |
| GCACAGCAAGGCCTTCCACA+AGG | - | chr3_1:80729283-80729302 | Msa0379550:intron | 60.0% | |
| CAAGAGCCCACTTGACCCTC+AGG | + | chr3_1:80728378-80728397 | Msa0379540:intron | 60.0% | |
| ! | AGAGGGCCAAGGCGCGATTT+TGG | - | chr3_1:80728596-80728615 | Msa0379550:exon | 60.0% |
| ! | GAGGGCCAAGGCGCGATTTT+GGG | - | chr3_1:80728597-80728616 | Msa0379550:exon | 60.0% |
| !! | GAGGGAAGGCGCTACTTTGG+AGG | - | chr3_1:80729074-80729093 | Msa0379550:intron | 60.0% |
| GCACAGCAAGGCCTTCCACA+AGG | - | chr3_1:80729283-80729302 | Msa0379550:intron | 60.0% | |
| CGCGCCTTGGCCCTCTCATA+GGG | + | chr3_1:80728592-80728611 | Msa0379540:three_prime_UTR | 65.0% | |
| TCGCGCCTTGGCCCTCTCAT+AGG | + | chr3_1:80728593-80728612 | Msa0379540:three_prime_UTR | 65.0% | |
| CGCGCCTTGGCCCTCTCATA+GGG | + | chr3_1:80728592-80728611 | Msa0379540:three_prime_UTR | 65.0% | |
| TCGCGCCTTGGCCCTCTCAT+AGG | + | chr3_1:80728593-80728612 | Msa0379540:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80728267 | 80729661 | 80728267 | ID=Msa0379550;Name=Msa0379550 |
| chr3_1 | mRNA | 80728267 | 80729661 | 80728267 | ID=Msa0379550-mRNA-1;Parent=Msa0379550;Name=Msa0379550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|333|223 |
| chr3_1 | exon | 80728267 | 80728956 | 80728267 | ID=Msa0379550-mRNA-1:exon:20217;Parent=Msa0379550-mRNA-1 |
| chr3_1 | exon | 80729289 | 80729661 | 80729289 | ID=Msa0379550-mRNA-1:exon:20216;Parent=Msa0379550-mRNA-1 |
| chr3_1 | five_prime_UTR | 80729604 | 80729661 | 80729604 | ID=Msa0379550-mRNA-1:five_prime_utr;Parent=Msa0379550-mRNA-1 |
| chr3_1 | CDS | 80729289 | 80729603 | 80729289 | ID=Msa0379550-mRNA-1:cds;Parent=Msa0379550-mRNA-1 |
| chr3_1 | CDS | 80728600 | 80728956 | 80728600 | ID=Msa0379550-mRNA-1:cds;Parent=Msa0379550-mRNA-1 |
| chr3_1 | three_prime_UTR | 80728267 | 80728599 | 80728267 | ID=Msa0379550-mRNA-1:three_prime_utr;Parent=Msa0379550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
