AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0034320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034320 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa0034320 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa0034320 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa0034320 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa0034320 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa0034320 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa0034320 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa0034320 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa0034320 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa0034320 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa0034320 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa0034320 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa0034320 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa0034320 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa0034320 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa0034320 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa0034320 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa0034320 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa0034320 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa0034320 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa0034320 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa0034320 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa0034320 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa0034320 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0034320 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa0034320 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa0034320 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa0034320 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa0034320 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa0034320 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0034320 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0034320 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa0034320 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa0034320 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa0034320 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0034320 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0034320 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa0034320 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa0034320 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa0034320 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa0034320 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa0034320 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa0034320 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa0034320 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0034320 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0034320 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0034320 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa0034320 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa0034320 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa0034320 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa0034320 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa0034320 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa0034320 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0034320 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0034320 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0034320 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0034320 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa0034320 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa0034320 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa0034320 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa0034320 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa0034320 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa0034320 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0034320 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0034320 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0034320 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0034320 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0034320 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 1_1:-62261349 Msa0034320:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 1_1:+62258452 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 1_1:-62260534 Msa0034320:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 1_1:-62260309 Msa0034320:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 1_1:-62258819 Msa0034320:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 1_1:+62260500 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 1_1:-62258384 Msa0034320:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 1_1:+62261498 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 1_1:+62259878 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 1_1:-62258626 Msa0034320:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 1_1:-62260543 Msa0034320:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 1_1:-62258591 Msa0034320:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 1_1:+62258445 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 1_1:+62260590 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 1_1:-62260815 Msa0034320:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 1_1:+62261526 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 1_1:+62260520 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 1_1:+62261430 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 1_1:-62260157 Msa0034320:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 1_1:-62258414 Msa0034320:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 1_1:-62260777 Msa0034320:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 1_1:-62258639 Msa0034320:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 1_1:-62261332 Msa0034320:intron
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 1_1:-62260359 Msa0034320:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 1_1:-62258699 Msa0034320:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 1_1:-62260570 Msa0034320:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 1_1:+62258480 None:intergenic
TTTAATTGGATGCAGGGAAC+TGG 0.446809 1_1:-62260175 Msa0034320:intron
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 1_1:-62261460 Msa0034320:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 1_1:-62260308 Msa0034320:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 1_1:-62258804 Msa0034320:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 1_1:-62261374 Msa0034320:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 1_1:-62260303 Msa0034320:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 1_1:-62260365 Msa0034320:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 1_1:-62260841 Msa0034320:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 1_1:-62258544 Msa0034320:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 1_1:-62260486 Msa0034320:intron
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 1_1:-62259926 Msa0034320:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 1_1:+62260855 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 1_1:-62258717 Msa0034320:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 1_1:-62258543 Msa0034320:three_prime_UTR
GCTTACCTGTGCACAAAGCT+CGG 0.530446 1_1:+62260481 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 1_1:-62260822 Msa0034320:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 1_1:+62260325 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 1_1:-62258632 Msa0034320:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 1_1:-62258841 Msa0034320:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 1_1:-62258799 Msa0034320:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 1_1:+62259908 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 1_1:-62260558 Msa0034320:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 1_1:+62260845 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 1_1:-62258636 Msa0034320:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 1_1:+62260318 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 1_1:-62260304 Msa0034320:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 1_1:-62258772 Msa0034320:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 1_1:-62260172 Msa0034320:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 1_1:-62259932 Msa0034320:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 1_1:+62261338 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 1_1:+62258532 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 1_1:+62259883 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 1_1:+62260322 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 1_1:-62258750 Msa0034320:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 1_1:-62260554 Msa0034320:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 1_1:-62260290 Msa0034320:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 1_1:-62260862 Msa0034320:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 1_1:+62258667 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 1_1:-62258635 Msa0034320:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 1_1:-62260595 Msa0034320:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 1_1:-62259887 Msa0034320:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 1_1:+62258579 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 1_1:+62258687 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 1_1:-62260305 Msa0034320:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 1_1:-62260154 Msa0034320:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 1_1:+62258811 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 1_1:-62258788 Msa0034320:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 1_1:-62260827 Msa0034320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG + chr1_1:62260218-62260237 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG + chr1_1:62260474-62260493 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG - chr1_1:62259007-62259026 Msa0034320:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG - chr1_1:62259008-62259027 Msa0034320:intron 15.0%
!!! TCACATCAAATATTTTTAAT+TGG - chr1_1:62259723-62259742 Msa0034320:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG + chr1_1:62259891-62259910 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG - chr1_1:62260162-62260181 Msa0034320:CDS 15.0%
!! GAAAACATATTATTAAAACT+TGG + chr1_1:62260475-62260494 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG + chr1_1:62260640-62260659 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG + chr1_1:62261470-62261489 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG - chr1_1:62258872-62258891 Msa0034320:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG - chr1_1:62258975-62258994 Msa0034320:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG - chr1_1:62259009-62259028 Msa0034320:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG - chr1_1:62259449-62259468 Msa0034320:intron 20.0%
!!! AAATATTTTTAATTGGATGC+AGG - chr1_1:62259730-62259749 Msa0034320:intron 20.0%
!!! AATATTTTTAATTGGATGCA+GGG - chr1_1:62259731-62259750 Msa0034320:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG - chr1_1:62259908-62259927 Msa0034320:CDS 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG + chr1_1:62260092-62260111 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG + chr1_1:62260093-62260112 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG - chr1_1:62260099-62260118 Msa0034320:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG - chr1_1:62260100-62260119 Msa0034320:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG + chr1_1:62260288-62260307 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG + chr1_1:62260324-62260343 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG + chr1_1:62260510-62260529 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG + chr1_1:62260511-62260530 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG - chr1_1:62260511-62260530 Msa0034320:CDS 20.0%
!! TTACATACAAGGAATATTAT+GGG - chr1_1:62260512-62260531 Msa0034320:CDS 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG - chr1_1:62260681-62260700 Msa0034320:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG + chr1_1:62261463-62261482 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG - chr1_1:62261528-62261547 Msa0034320:five_prime_UTR 20.0%
!!! GACTAACAAGAAACTTTTTT+GGG + chr1_1:62258513-62258532 None:intergenic 25.0%
!!! TGACTAACAAGAAACTTTTT+TGG + chr1_1:62258514-62258533 None:intergenic 25.0%
! AAAAAGTTTCTTGTTAGTCA+TGG - chr1_1:62258514-62258533 Msa0034320:three_prime_UTR 25.0%
! ATAAGAATTAGATAGTAACC+TGG + chr1_1:62258601-62258620 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG + chr1_1:62258646-62258665 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG + chr1_1:62258647-62258666 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG - chr1_1:62258974-62258993 Msa0034320:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG + chr1_1:62259197-62259216 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG - chr1_1:62259194-62259213 Msa0034320:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG - chr1_1:62259218-62259237 Msa0034320:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG - chr1_1:62259231-62259250 Msa0034320:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG - chr1_1:62259268-62259287 Msa0034320:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG - chr1_1:62259339-62259358 Msa0034320:intron 25.0%
! AATCAAAGATTTCATGATTC+AGG - chr1_1:62259603-62259622 Msa0034320:intron 25.0%
! ATCAAAGATTTCATGATTCA+GGG - chr1_1:62259604-62259623 Msa0034320:intron 25.0%
! AGCGTACTAACAAAATATAA+CGG + chr1_1:62259659-62259678 None:intergenic 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG - chr1_1:62259865-62259884 Msa0034320:CDS 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG - chr1_1:62260054-62260073 Msa0034320:intron 25.0%
! TACTTTATGAATCAGATAAG+GGG - chr1_1:62260101-62260120 Msa0034320:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG - chr1_1:62260405-62260424 Msa0034320:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG + chr1_1:62260443-62260462 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG - chr1_1:62260443-62260462 Msa0034320:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG + chr1_1:62260470-62260489 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG - chr1_1:62260667-62260686 Msa0034320:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG - chr1_1:62260721-62260740 Msa0034320:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG + chr1_1:62260764-62260783 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG + chr1_1:62260765-62260784 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG - chr1_1:62260798-62260817 Msa0034320:CDS 25.0%
! TTTGACAATTTAACATCAAC+AGG - chr1_1:62260832-62260851 Msa0034320:CDS 25.0%
! TTGACAATTTAACATCAACA+GGG - chr1_1:62260833-62260852 Msa0034320:CDS 25.0%
! TGCAATCAAAGTCAATAAAA+AGG + chr1_1:62260885-62260904 None:intergenic 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG + chr1_1:62261189-62261208 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG + chr1_1:62261190-62261209 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG - chr1_1:62261368-62261387 Msa0034320:CDS 25.0%
! ATAATTAAATGCCACTGAAA+GGG - chr1_1:62261369-62261388 Msa0034320:CDS 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG - chr1_1:62261397-62261416 Msa0034320:exon 25.0%
!!! TAACAAGAAACTTTTTTGGG+TGG + chr1_1:62258510-62258529 None:intergenic 30.0%
ATGCTATAAGCTGCAAATTA+AGG + chr1_1:62258663-62258682 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG - chr1_1:62258948-62258967 Msa0034320:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG - chr1_1:62259342-62259361 Msa0034320:intron 30.0%
! TATGAGTATTGTGGTGAAAT+TGG - chr1_1:62259486-62259505 Msa0034320:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG - chr1_1:62259538-62259557 Msa0034320:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG + chr1_1:62259597-62259616 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG - chr1_1:62259685-62259704 Msa0034320:intron 30.0%
ACATATACACATGATGCTAA+GGG - chr1_1:62259686-62259705 Msa0034320:intron 30.0%
CCACTTAAAAATACATTTCC+AGG + chr1_1:62260407-62260426 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG - chr1_1:62260404-62260423 Msa0034320:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG + chr1_1:62260437-62260456 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG + chr1_1:62260438-62260457 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG + chr1_1:62260665-62260684 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG + chr1_1:62260728-62260747 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG - chr1_1:62261067-62261086 Msa0034320:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG - chr1_1:62261195-62261214 Msa0034320:intron 30.0%
TGTCAATTACAATGCAGTTA+AGG - chr1_1:62261273-62261292 Msa0034320:intron 30.0%
AATTACAATGCAGTTAAGGA+GGG - chr1_1:62261277-62261296 Msa0034320:intron 30.0%
AGTCTGCTAATGCATAATAT+AGG + chr1_1:62261435-62261454 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG - chr1_1:62261498-62261517 Msa0034320:five_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG + chr1_1:62258417-62258436 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG + chr1_1:62258485-62258504 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG + chr1_1:62258501-62258520 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG - chr1_1:62258538-62258557 Msa0034320:three_prime_UTR 35.0%
ATGACAATTTACTGCATCCA+AGG + chr1_1:62259070-62259089 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG - chr1_1:62259135-62259154 Msa0034320:intron 35.0%
! GAAAACCTTGCTTGTTACTT+TGG + chr1_1:62259325-62259344 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG - chr1_1:62259378-62259397 Msa0034320:intron 35.0%
! CGGAAATTCTCAACTGTTTT+GGG + chr1_1:62259414-62259433 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG + chr1_1:62259415-62259434 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG - chr1_1:62259477-62259496 Msa0034320:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG + chr1_1:62259593-62259612 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG - chr1_1:62259607-62259626 Msa0034320:intron 35.0%
AAGATTTCATGATTCAGGGA+GGG - chr1_1:62259608-62259627 Msa0034320:intron 35.0%
! TCTTTTTACTGGACTGTCAA+TGG - chr1_1:62259919-62259938 Msa0034320:CDS 35.0%
AATTGACTGCCGTTACTATT+AGG + chr1_1:62260037-62260056 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG - chr1_1:62260501-62260520 Msa0034320:CDS 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG + chr1_1:62260622-62260641 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG + chr1_1:62260974-62260993 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG + chr1_1:62261104-62261123 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG - chr1_1:62261108-62261127 Msa0034320:intron 35.0%
CAATTACAATGCAGTTAAGG+AGG - chr1_1:62261276-62261295 Msa0034320:intron 35.0%
! ATCCTTTTAGATAACACGCG+TGG - chr1_1:62258384-62258403 Msa0034320:three_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG + chr1_1:62258389-62258408 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG - chr1_1:62258452-62258471 Msa0034320:three_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG + chr1_1:62258577-62258596 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG - chr1_1:62259071-62259090 Msa0034320:intron 40.0%
GTCATCAGGATATCATTACG+CGG - chr1_1:62259085-62259104 Msa0034320:intron 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG + chr1_1:62259248-62259267 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG - chr1_1:62259250-62259269 Msa0034320:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG - chr1_1:62259284-62259303 Msa0034320:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG - chr1_1:62259369-62259388 Msa0034320:intron 40.0%
TGGGAACAACATCTCCAAAT+AGG + chr1_1:62259395-62259414 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG - chr1_1:62259547-62259566 Msa0034320:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG + chr1_1:62259590-62259609 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG - chr1_1:62259609-62259628 Msa0034320:intron 40.0%
TTTAATTGGATGCAGGGAAC+TGG - chr1_1:62259737-62259756 Msa0034320:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG - chr1_1:62260025-62260044 Msa0034320:intron 40.0%
AGATGGGAAAATAGTCTCAC+CGG + chr1_1:62260076-62260095 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG - chr1_1:62260381-62260400 Msa0034320:intron 40.0%
GGCCATATCTCATTTAACGT+GGG + chr1_1:62260386-62260405 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG + chr1_1:62260387-62260406 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG - chr1_1:62260386-62260405 Msa0034320:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG - chr1_1:62261071-62261090 Msa0034320:intron 40.0%
GACAATCGCCATGTTGTATT+TGG - chr1_1:62261093-62261112 Msa0034320:intron 40.0%
TGGACATGTCATTGATGGAA+TGG - chr1_1:62261113-62261132 Msa0034320:intron 40.0%
TTGATGGAATGGATGTTGTG+AGG - chr1_1:62261124-62261143 Msa0034320:intron 40.0%
AGGATAGATCAACCATCTAG+AGG + chr1_1:62261228-62261247 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG + chr1_1:62261248-62261267 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG - chr1_1:62261321-62261340 Msa0034320:intron 40.0%
AGCAATGACAATCCAAACAC+AGG + chr1_1:62261336-62261355 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG - chr1_1:62258563-62258582 Msa0034320:three_prime_UTR 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG - chr1_1:62258580-62258599 Msa0034320:three_prime_UTR 45.0%
GCAAGCCAAAGTAACAAGCA+AGG - chr1_1:62259317-62259336 Msa0034320:intron 45.0%
GTTATTGGAGGTGAATCTGC+TGG - chr1_1:62259354-62259373 Msa0034320:intron 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG - chr1_1:62259426-62259445 Msa0034320:intron 45.0%
TGTGCAGGAGAGAAAGGATA+TGG - chr1_1:62259553-62259572 Msa0034320:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG - chr1_1:62259755-62259774 Msa0034320:intron 45.0%
TTCCTTGCAGTGAAGCATGT+TGG - chr1_1:62259980-62259999 Msa0034320:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG + chr1_1:62260007-62260026 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG - chr1_1:62260010-62260029 Msa0034320:intron 45.0%
ACTGCCGTTACTATTAGGAC+CGG + chr1_1:62260032-62260051 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG - chr1_1:62260118-62260137 Msa0034320:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG - chr1_1:62260119-62260138 Msa0034320:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG + chr1_1:62260130-62260149 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG - chr1_1:62260127-62260146 Msa0034320:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG - chr1_1:62261140-62261159 Msa0034320:intron 45.0%
GAGACAAGCAGCTACAACAA+TGG - chr1_1:62261162-62261181 Msa0034320:intron 45.0%
TCTGGAGAACTTCCTCTAGA+TGG - chr1_1:62261213-62261232 Msa0034320:intron 45.0%
TACAATGCAGTTAAGGAGGG+TGG - chr1_1:62261280-62261299 Msa0034320:intron 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG - chr1_1:62261287-62261306 Msa0034320:intron 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG - chr1_1:62261288-62261307 Msa0034320:intron 45.0%
TTCGCTAAATGCCCTTTCAG+TGG + chr1_1:62261383-62261402 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG - chr1_1:62259090-62259109 Msa0034320:intron 50.0%
TCATTACGCGGCTAGGCTTT+CGG - chr1_1:62259097-62259116 Msa0034320:intron 50.0%
TTGGAGGTGAATCTGCTGGA+AGG - chr1_1:62259358-62259377 Msa0034320:intron 50.0%
GCTTACCTGTGCACAAAGCT+CGG + chr1_1:62259434-62259453 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG - chr1_1:62259740-62259759 Msa0034320:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG - chr1_1:62259758-62259777 Msa0034320:intron 50.0%
GACCAACATGCTTCACTGCA+AGG + chr1_1:62259985-62260004 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG - chr1_1:62260000-62260019 Msa0034320:intron 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG - chr1_1:62261286-62261305 Msa0034320:intron 50.0%
AGCAGTACCAGAGCACACCT+TGG - chr1_1:62259050-62259069 Msa0034320:intron 55.0%
ACTGCATCCAAGGTGTGCTC+TGG + chr1_1:62259060-62259079 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG - chr1_1:62259986-62260005 Msa0034320:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG - chr1_1:62261291-62261310 Msa0034320:intron 55.0%
!!! AAGGAGGGTGGTTTTGGGGA+GGG - chr1_1:62261292-62261311 Msa0034320:intron 55.0%
CAGGGAGGGGACTTCACAGA+AGG - chr1_1:62259622-62259641 Msa0034320:intron 60.0%
!!! AGGAGGGTGGTTTTGGGGAG+GGG - chr1_1:62261293-62261312 Msa0034320:intron 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+GGG - chr1_1:62261294-62261313 Msa0034320:intron 65.0%
!!! GGTGGTTTTGGGGAGGGGGA+GGG - chr1_1:62261298-62261317 Msa0034320:intron 65.0%
!!! GTGGTTTTGGGGAGGGGGAG+GGG - chr1_1:62261299-62261318 Msa0034320:intron 65.0%
!!! TGGTTTTGGGGAGGGGGAGG+GGG - chr1_1:62261300-62261319 Msa0034320:intron 65.0%
!!! GGGTGGTTTTGGGGAGGGGG+AGG - chr1_1:62261297-62261316 Msa0034320:intron 70.0%
! GTGCGTGCGCGCGCACGTGC+TGG + chr1_1:62260994-62261013 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 62258374 62261560 62258374 ID=Msa0034320;Name=Msa0034320
chr1_1 mRNA 62258374 62261560 62258374 ID=Msa0034320-mRNA-1;Parent=Msa0034320;Name=Msa0034320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|7|321|251
chr1_1 exon 62258374 62258853 62258374 ID=Msa0034320-mRNA-1:exon:19626;Parent=Msa0034320-mRNA-1
chr1_1 exon 62259859 62259944 62259859 ID=Msa0034320-mRNA-1:exon:19625;Parent=Msa0034320-mRNA-1
chr1_1 exon 62260128 62260182 62260128 ID=Msa0034320-mRNA-1:exon:19624;Parent=Msa0034320-mRNA-1
chr1_1 exon 62260286 62260374 62260286 ID=Msa0034320-mRNA-1:exon:19623;Parent=Msa0034320-mRNA-1
chr1_1 exon 62260487 62260628 62260487 ID=Msa0034320-mRNA-1:exon:19622;Parent=Msa0034320-mRNA-1
chr1_1 exon 62260750 62260905 62260750 ID=Msa0034320-mRNA-1:exon:19621;Parent=Msa0034320-mRNA-1
chr1_1 exon 62261333 62261560 62261333 ID=Msa0034320-mRNA-1:exon:19620;Parent=Msa0034320-mRNA-1
chr1_1 five_prime_UTR 62261402 62261560 62261402 ID=Msa0034320-mRNA-1:five_prime_utr;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62261333 62261401 62261333 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62260750 62260905 62260750 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62260487 62260628 62260487 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62260286 62260374 62260286 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62260128 62260182 62260128 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62259859 62259944 62259859 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 CDS 62258695 62258853 62258695 ID=Msa0034320-mRNA-1:cds;Parent=Msa0034320-mRNA-1
chr1_1 three_prime_UTR 62258374 62258694 62258374 ID=Msa0034320-mRNA-1:three_prime_utr;Parent=Msa0034320-mRNA-1
Gene Sequence

>Msa0034320

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa0034320

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*