AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0738280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738280 MtrunA17_Chr5g0436831 92.442 516 12 2 1 491 1 514 0.0 937
Msa0738280 MtrunA17_Chr7g0253961 28.358 536 302 14 5 478 10 525 9.31e-44 162
Msa0738280 MtrunA17_Chr4g0003211 25.586 469 278 15 69 478 126 582 1.16e-20 95.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0738280 AT5G05740.3 60.911 527 149 9 1 483 1 514 0.0 592
Msa0738280 AT5G05740.2 60.755 530 148 10 1 483 1 517 0.0 589
Msa0738280 AT5G05740.1 57.603 559 148 11 1 483 1 546 0.0 575
Msa0738280 AT5G35220.1 26.755 527 303 13 26 478 14 531 2.00e-41 156
Msa0738280 AT5G35210.1 39.316 117 68 1 287 400 1545 1661 3.56e-16 82.4
Msa0738280 AT1G17870.1 25.445 562 315 19 9 478 3 552 1.33e-15 79.7

Find 134 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAGGGTTTCATCTATAAA+TGG 0.131698 5_1:+56038517 None:intergenic
GGTCTTGTTCTTCTGCTTCT+AGG 0.158404 5_1:-56040600 Msa0738280:CDS
CAATAAATCGGATTGCAAAT+TGG 0.179236 5_1:+56041636 None:intergenic
AGGAATGAGAATGATGAAAA+TGG 0.186441 5_1:+56046834 None:intergenic
CAAGCTTAACTCCAAGGTTT+TGG 0.213368 5_1:+56041137 None:intergenic
TGACAATCTGAATTTGTTAA+AGG 0.219792 5_1:-56041230 Msa0738280:CDS
TCATCTGATAGAGGAGAAAT+TGG 0.248471 5_1:+56038625 None:intergenic
ACAAGAGGGTTGATAGAAAT+TGG 0.269455 5_1:+56040295 None:intergenic
CATTTGTTATAGGATAAATT+TGG 0.280363 5_1:-56041919 Msa0738280:intron
CTATCAACCCTCTTGTGATC+TGG 0.284156 5_1:-56040288 Msa0738280:CDS
AATAAATCGGATTGCAAATT+GGG 0.290251 5_1:+56041637 None:intergenic
AACATTTCGCACTGAACAAC+TGG 0.313206 5_1:+56038284 None:intergenic
AAACCCTAACGCCATTAAAA+AGG 0.313721 5_1:+56046814 None:intergenic
CTTGTTACTGCACTTATTAT+CGG 0.320323 5_1:-56041190 Msa0738280:CDS
ACCCTCTTGTGATCTGGGCT+TGG 0.322194 5_1:-56040282 Msa0738280:CDS
AAATGGAGAAACACAATCTT+TGG 0.324342 5_1:-56044856 Msa0738280:CDS
CCCTCTTGTGATCTGGGCTT+GGG 0.337951 5_1:-56040281 Msa0738280:CDS
TGGTGGCAGATAGGCTCTTT+TGG 0.338317 5_1:-56040711 Msa0738280:intron
CATCCTCAGGATTGACTAGA+AGG 0.346366 5_1:+56041878 None:intergenic
TGGTTTGGTGCTGCGTCTTT+TGG 0.348500 5_1:-56041697 Msa0738280:CDS
TATCAACCCTCTTGTGATCT+GGG 0.351252 5_1:-56040287 Msa0738280:CDS
ATTTATAATTCATTAACAAA+TGG 0.362122 5_1:-56038331 Msa0738280:three_prime_UTR
TCTGGTTGTAAAGTAGTTCT+TGG 0.370039 5_1:+56041832 None:intergenic
GCAGCTGCTGGACCAATTGC+CGG 0.374813 5_1:-56040633 Msa0738280:CDS
TTGTTAAAGGATGGCCTACC+TGG 0.381827 5_1:-56041217 Msa0738280:CDS
TCCCTAACAGCCTCAACAAC+TGG 0.384146 5_1:-56042285 Msa0738280:intron
TTGTTACTGCACTTATTATC+GGG 0.385893 5_1:-56041189 Msa0738280:CDS
CGATACCTTTCTTCCCCATA+TGG 0.388554 5_1:+56040189 None:intergenic
CCAATTGCCGGATTTGCATT+GGG 0.393078 5_1:-56040621 Msa0738280:CDS
ATAAATTTGGAGATGAATAC+AGG 0.402996 5_1:-56041906 Msa0738280:CDS
CAAGGGTTTCATCTATAAAT+GGG 0.405206 5_1:+56038518 None:intergenic
GGAATGAGAATGATGAAAAT+GGG 0.406041 5_1:+56046835 None:intergenic
TTGCTCAAGATTGCAGCTGC+TGG 0.406860 5_1:-56040645 Msa0738280:CDS
TTTATAATTCATTAACAAAT+GGG 0.409451 5_1:-56038330 Msa0738280:three_prime_UTR
TGAAGGTAGTGAGAGATTCA+TGG 0.410422 5_1:+56046753 None:intergenic
TTTAGCTGTTCTGCATCTAC+AGG 0.415775 5_1:+56044804 None:intergenic
AACAAGACCCAATGCAAATC+CGG 0.416938 5_1:+56040614 None:intergenic
ACCAATTGCCGGATTTGCAT+TGG 0.418392 5_1:-56040622 Msa0738280:CDS
TTAATGATGTAGCTTTCTAC+TGG 0.420976 5_1:-56038678 Msa0738280:CDS
ACACTCTGGCAACATCACTA+TGG 0.421289 5_1:-56038465 Msa0738280:three_prime_UTR
CTTGTGATCTGGGCTTGGGC+AGG 0.421611 5_1:-56040277 Msa0738280:CDS
CACACACCTCGTAAGGATCT+TGG 0.435624 5_1:+56042180 None:intergenic
CAGGCTTCAATTCGCTTCAC+AGG 0.436252 5_1:-56038736 Msa0738280:CDS
CCCAATGCAAATCCGGCAAT+TGG 0.439644 5_1:+56040621 None:intergenic
TCCAGCGGGAATACTGTTGA+TGG 0.441942 5_1:+56040240 None:intergenic
TCCCGTACTTTGTTCCTAGC+TGG 0.456423 5_1:-56041111 Msa0738280:CDS
GTACTTTGTTCCTAGCTGGC+AGG 0.463565 5_1:-56041107 Msa0738280:intron
GGAACGACGCGGAAAGTTGA+AGG 0.464506 5_1:+56046730 None:intergenic
CTTGGAACGACAACGGCCAC+TGG 0.467933 5_1:+56041850 None:intergenic
TACAAATCAAAATGATGTGC+AGG 0.470961 5_1:-56044763 Msa0738280:intron
TGTTCTGCATCTACAGGTGG+AGG 0.473670 5_1:+56044810 None:intergenic
CAAAACCTTGGAGTTAAGCT+TGG 0.474152 5_1:-56041136 Msa0738280:CDS
TCATTTCTAGCCGGCGGCAT+TGG 0.474891 5_1:-56040516 Msa0738280:intron
TTAGCTGTACCTGAGTGGTT+TGG 0.476022 5_1:-56041712 Msa0738280:intron
TCAGTTATTTCATCTGATAG+AGG 0.476396 5_1:+56038616 None:intergenic
TTTCTAGTTGCCCAAAACCT+TGG 0.479583 5_1:-56041148 Msa0738280:CDS
AAGTAAGTACGAGTTGTCTC+TGG 0.481786 5_1:+56041814 None:intergenic
GCCACTGGCTTATCATCCTC+AGG 0.483050 5_1:+56041865 None:intergenic
CTTCTTCTTCTTCCTGTAGG+AGG 0.484021 5_1:+56046613 None:intergenic
TCTATAAATGGGAAAGGGTA+TGG 0.488120 5_1:+56038529 None:intergenic
TGCCAGCTAGGAACAAAGTA+CGG 0.492497 5_1:+56041109 None:intergenic
ATTCCCGCTGGAGAAATTGA+TGG 0.493577 5_1:-56040229 Msa0738280:CDS
GAATTACGAAAACGATTAGA+AGG 0.496921 5_1:+56046661 None:intergenic
GCCAGTGGATCACCTCTGCC+AGG 0.499435 5_1:-56042414 Msa0738280:CDS
AATGTATCAAAACATACCCT+TGG 0.500360 5_1:-56038395 Msa0738280:three_prime_UTR
CTGATATTCTTCTTGCAAAG+AGG 0.500793 5_1:-56038649 Msa0738280:CDS
AGAGCAACATACTTGTCATC+AGG 0.510930 5_1:+56038592 None:intergenic
CGATAATAAGTGCAGTAACA+AGG 0.511270 5_1:+56041191 None:intergenic
ATTATCGGGGTACATGAACT+TGG 0.511624 5_1:-56041175 Msa0738280:CDS
TTGAAGTTGAATCCTCCTAC+AGG 0.519904 5_1:-56046625 Msa0738280:CDS
TTAAGAACTGAAGTTGAGGT+AGG 0.527451 5_1:+56046865 None:intergenic
CCTCCATCAATTTCTCCAGC+GGG 0.528767 5_1:+56040226 None:intergenic
CTTGGTAACGTTCTCAAGGA+AGG 0.529950 5_1:-56040322 Msa0738280:CDS
AATCTGAATTTGTTAAAGGA+TGG 0.531461 5_1:-56041226 Msa0738280:CDS
TATCATACAACCTGCCAGCT+AGG 0.533569 5_1:+56041097 None:intergenic
ATACCTCCAAGTGACGGTAT+TGG 0.534054 5_1:-56040570 Msa0738280:CDS
AGATAGGCACACACCTCGTA+AGG 0.537678 5_1:+56042173 None:intergenic
CAAGAAGTGCAGTGGGAGAG+AGG 0.540257 5_1:+56046709 None:intergenic
ATTACATCATCCAGTTGTTG+AGG 0.540848 5_1:+56042275 None:intergenic
AGTGCAGTAACAAGGGCTCC+AGG 0.541596 5_1:+56041199 None:intergenic
TTTCATCTATAAATGGGAAA+GGG 0.545765 5_1:+56038524 None:intergenic
GGGGACATTGCGAAGCAGTA+AGG 0.546571 5_1:+56041657 None:intergenic
GTTTCATCTATAAATGGGAA+AGG 0.548267 5_1:+56038523 None:intergenic
TTTGAAACTCAGTATACGGT+AGG 0.552926 5_1:-56038424 Msa0738280:three_prime_UTR
AGCTGTTCTGCATCTACAGG+TGG 0.557660 5_1:+56044807 None:intergenic
CCCTCCATCAATTTCTCCAG+CGG 0.559231 5_1:+56040225 None:intergenic
TGGAGAAACACAATCTTTGG+AGG 0.560871 5_1:-56044853 Msa0738280:CDS
ATCACCTCTGCCAGGTGTGA+AGG 0.562627 5_1:-56042406 Msa0738280:intron
ACCTGGCAGAGGTGATCCAC+TGG 0.563174 5_1:+56042413 None:intergenic
GAAGTTAAGAACTGAAGTTG+AGG 0.566189 5_1:+56046861 None:intergenic
GTTTCTTGGTAACGTTCTCA+AGG 0.570500 5_1:-56040326 Msa0738280:CDS
GCCATCAACAGTATTCCCGC+TGG 0.575199 5_1:-56040241 Msa0738280:CDS
GCCAGCTAGGAACAAAGTAC+GGG 0.582312 5_1:+56041110 None:intergenic
ACACCAATACCGTCACTTGG+AGG 0.583153 5_1:+56040567 None:intergenic
AATATAATCACCTTCACACC+TGG 0.583486 5_1:+56042396 None:intergenic
GATGACAAGTATGTTGCTCT+CGG 0.586737 5_1:-56038589 Msa0738280:CDS
CACGAGTCATTTCTAGCCGG+CGG 0.588757 5_1:-56040522 Msa0738280:CDS
TGTTACTGCACTTATTATCG+GGG 0.591294 5_1:-56041188 Msa0738280:CDS
ATCACCTTCACACCTGGCAG+AGG 0.594663 5_1:+56042402 None:intergenic
AAGTTGAGGTAGGAAGAAGA+AGG 0.595955 5_1:+56046875 None:intergenic
ACAACACCAATACCGTCACT+TGG 0.597252 5_1:+56040564 None:intergenic
GATAATAAGTGCAGTAACAA+GGG 0.601874 5_1:+56041192 None:intergenic
ACTGTTTCTAGAAACTTGCA+AGG 0.605257 5_1:+56038500 None:intergenic
GGACTCCAAGCTTAACTCCA+AGG 0.609370 5_1:+56041131 None:intergenic
GCCCAAGCCCAGATCACAAG+AGG 0.612324 5_1:+56040280 None:intergenic
TTGAAAGCAAGAAGTGCAGT+GGG 0.613507 5_1:+56046702 None:intergenic
CCCGCTGGAGAAATTGATGG+AGG 0.614785 5_1:-56040226 Msa0738280:CDS
ATATAGCTTACCAATGCCGC+CGG 0.616022 5_1:+56040506 None:intergenic
TTTCCTTCTAGTCAATCCTG+AGG 0.617367 5_1:-56041881 Msa0738280:CDS
TTTCACGAGTCATTTCTAGC+CGG 0.617627 5_1:-56040525 Msa0738280:CDS
CCGCTGGAGAAATTGATGGA+GGG 0.622971 5_1:-56040225 Msa0738280:CDS
CTGTTTCTAGAAACTTGCAA+GGG 0.625123 5_1:+56038501 None:intergenic
TAATGATGTAGCTTTCTACT+GGG 0.625802 5_1:-56038677 Msa0738280:CDS
CAGTAACAAGGGCTCCAGGT+AGG 0.628013 5_1:+56041203 None:intergenic
TTTGTTATACCTCCAAGTGA+CGG 0.635773 5_1:-56040576 Msa0738280:CDS
GACGCAGCACCAAACCACTC+AGG 0.637018 5_1:+56041703 None:intergenic
GTTCTGCATCTACAGGTGGA+GGG 0.651010 5_1:+56044811 None:intergenic
TGTAGTGTTAATGAGTCTGA+TGG 0.652732 5_1:-56046577 Msa0738280:CDS
ATTGAAAGCAAGAAGTGCAG+TGG 0.654752 5_1:+56046701 None:intergenic
TGGAGGGTTACTTTGCTCAG+AGG 0.654797 5_1:+56044827 None:intergenic
ACGCGGAAAGTTGAAGGTGA+AGG 0.655777 5_1:+56046736 None:intergenic
TTGCAAGTTTCTAGAAACAG+TGG 0.658448 5_1:-56038498 Msa0738280:exon
TCCTGAGGATGATAAGCCAG+TGG 0.661607 5_1:-56041866 Msa0738280:CDS
GTGGCCACATGCATACACTC+TGG 0.662351 5_1:-56038479 Msa0738280:three_prime_UTR
TACTGTTGATGGCATTGATG+AGG 0.664732 5_1:+56040251 None:intergenic
ATAAATCGGATTGCAAATTG+GGG 0.665060 5_1:+56041638 None:intergenic
AGTAGTTCTTGGAACGACAA+CGG 0.680756 5_1:+56041843 None:intergenic
CCCAAGCCCAGATCACAAGA+GGG 0.683801 5_1:+56040281 None:intergenic
AAGAAGAAGGAAGTGACGCG+AGG 0.687574 5_1:+56046888 None:intergenic
GTCTGATGGTGATAAAGACG+AGG 0.707643 5_1:-56046563 Msa0738280:intron
GATAACATAGAAGTTGCCAG+TGG 0.708209 5_1:-56042429 Msa0738280:CDS
GTTGCCAGAGTGTATGCATG+TGG 0.719226 5_1:+56038475 None:intergenic
AACAAGCCAAGATCCTTACG+AGG 0.757784 5_1:-56042186 Msa0738280:intron
AGTGGGAGAGAGGAACGACG+CGG 0.781394 5_1:+56046719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTAATTATAACATTTTTT+TGG - chr5_1:56039255-56039274 Msa0738280:intron 10.0%
!!! AATAGTTTATATTTTATTGA+AGG + chr5_1:56044209-56044228 None:intergenic 10.0%
!! ATTTATAATTCATTAACAAA+TGG - chr5_1:56046813-56046832 Msa0738280:five_prime_UTR 10.0%
!! TTTATAATTCATTAACAAAT+GGG - chr5_1:56046814-56046833 Msa0738280:five_prime_UTR 10.0%
!! TCTTTATTAAGTAAGATAAT+TGG - chr5_1:56038733-56038752 Msa0738280:CDS 15.0%
!!! TCATTTTCTCAAAAATTTAT+TGG + chr5_1:56038864-56038883 None:intergenic 15.0%
!!! ACATTAATGTAATTCTATTT+TGG - chr5_1:56039071-56039090 Msa0738280:intron 15.0%
!! AAACCAAAAAACTTTATAAT+TGG - chr5_1:56039464-56039483 Msa0738280:intron 15.0%
!! GTATATTCTTTAACATATAT+TGG - chr5_1:56039629-56039648 Msa0738280:intron 15.0%
!!! AAGAATAATATGTTTCTATT+TGG + chr5_1:56040100-56040119 None:intergenic 15.0%
!! TTTATTTATCGTAGAATAAT+AGG + chr5_1:56041123-56041142 None:intergenic 15.0%
!! TAGAAGAAAAATATTTAGAA+GGG - chr5_1:56041517-56041536 Msa0738280:intron 15.0%
!! TTATGTTAGAAATTTCAAAT+CGG + chr5_1:56041651-56041670 None:intergenic 15.0%
!! ATATAACACAAAAAAAATTG+TGG + chr5_1:56042131-56042150 None:intergenic 15.0%
!! TTTACATGATATATATTAGA+TGG + chr5_1:56044174-56044193 None:intergenic 15.0%
!! ATAAAATATAAACTATTCAG+AGG - chr5_1:56044212-56044231 Msa0738280:intron 15.0%
!! TTCAAATTATCATTAAACTT+TGG + chr5_1:56045077-56045096 None:intergenic 15.0%
!! GTTTCTTAAATAATACTATT+AGG - chr5_1:56046200-56046219 Msa0738280:intron 15.0%
!! CAAAAAACTTTATAATTGGA+GGG - chr5_1:56039468-56039487 Msa0738280:intron 20.0%
!! TTAAAGAATCATTTCTCATT+TGG - chr5_1:56039704-56039723 Msa0738280:intron 20.0%
!! AGAATAATGATATCTTAAGT+TGG - chr5_1:56039827-56039846 Msa0738280:intron 20.0%
!! TAGAAACATATTATTCTTAG+TGG - chr5_1:56040102-56040121 Msa0738280:intron 20.0%
!! GTTTAAAAATTGTATTGTCA+AGG + chr5_1:56040243-56040262 None:intergenic 20.0%
!!! TACAATTTTTAAACTTACGT+AGG - chr5_1:56040249-56040268 Msa0738280:CDS 20.0%
!! CTTGACTATTATATTCAATT+TGG - chr5_1:56040409-56040428 Msa0738280:intron 20.0%
!! CTATTATATTCAATTTGGTA+TGG - chr5_1:56040414-56040433 Msa0738280:intron 20.0%
!! AAAAATAAATACTATGTTCC+TGG - chr5_1:56040534-56040553 Msa0738280:CDS 20.0%
!! GTAATCAAAAATATAATTCC+AGG + chr5_1:56040555-56040574 None:intergenic 20.0%
!!! AGATGATTTTTTTAGAGTTT+AGG - chr5_1:56040606-56040625 Msa0738280:CDS 20.0%
!!! TTAATAATTTCTTTTCACTC+TGG - chr5_1:56040809-56040828 Msa0738280:intron 20.0%
!! CTAGAAGAAAAATATTTAGA+AGG - chr5_1:56041516-56041535 Msa0738280:intron 20.0%
!!! AAGATTGGAAATTTTAATTG+AGG - chr5_1:56041607-56041626 Msa0738280:intron 20.0%
!!! AGATTGGAAATTTTAATTGA+GGG - chr5_1:56041608-56041627 Msa0738280:intron 20.0%
!!! ATAATAAATTGCTATGCTTT+TGG - chr5_1:56041694-56041713 Msa0738280:CDS 20.0%
!!! TAATAAATTGCTATGCTTTT+GGG - chr5_1:56041695-56041714 Msa0738280:CDS 20.0%
!!! AAGAAGTTCAAAATTTTCAA+TGG - chr5_1:56041789-56041808 Msa0738280:intron 20.0%
!!! TATTTGAGATGATGAATATT+TGG - chr5_1:56042068-56042087 Msa0738280:intron 20.0%
!! TGAGATAATCTTTATCAATT+TGG + chr5_1:56042540-56042559 None:intergenic 20.0%
!!! TTTTATTTTTCTGTTCATGA+TGG + chr5_1:56042599-56042618 None:intergenic 20.0%
!! ACATAAGAGATATGAAAAAA+GGG + chr5_1:56042808-56042827 None:intergenic 20.0%
!! AACATAAGAGATATGAAAAA+AGG + chr5_1:56042809-56042828 None:intergenic 20.0%
!! TAAGAAATGAAACAGAAATA+TGG + chr5_1:56043148-56043167 None:intergenic 20.0%
!!! CATTTGTTATAGGATAAATT+TGG - chr5_1:56043225-56043244 Msa0738280:intron 20.0%
!!! TCTTTTTTATTTTCTACTCA+TGG - chr5_1:56043382-56043401 Msa0738280:intron 20.0%
!!! GAACATCAACAATAATATTT+TGG + chr5_1:56043882-56043901 None:intergenic 20.0%
!! GATGCATATAATAAACTTTA+GGG - chr5_1:56044234-56044253 Msa0738280:intron 20.0%
!! CCATAACATATTAAATTATG+TGG + chr5_1:56044285-56044304 None:intergenic 20.0%
!! CCACATAATTTAATATGTTA+TGG - chr5_1:56044282-56044301 Msa0738280:intron 20.0%
!! AGATTCAAATTGACAAAATT+TGG - chr5_1:56044315-56044334 Msa0738280:intron 20.0%
!!! AGAAATTTTGATGCTTAATT+TGG - chr5_1:56044413-56044432 Msa0738280:intron 20.0%
!! CAACATTAATATGTTGAAAA+AGG - chr5_1:56045287-56045306 Msa0738280:intron 20.0%
!!! TATAGTTTATTGTTATTGCT+TGG - chr5_1:56045501-56045520 Msa0738280:intron 20.0%
!!! ATTTAAAAACTTTTTGTGGA+GGG + chr5_1:56046073-56046092 None:intergenic 20.0%
!!! CAAGATTTAAAAACTTTTTG+TGG + chr5_1:56046077-56046096 None:intergenic 20.0%
!!! CACAAAAAGTTTTTAAATCT+TGG - chr5_1:56046075-56046094 Msa0738280:intron 20.0%
!!! AAAAAGTTTTTAAATCTTGG+TGG - chr5_1:56046078-56046097 Msa0738280:intron 20.0%
!! TATTAGGATATTTAATTGAG+TGG - chr5_1:56046216-56046235 Msa0738280:intron 20.0%
!! TTACACATAAAAAGAAGTAA+AGG + chr5_1:56046365-56046384 None:intergenic 20.0%
!!! ATTTTTTGAAACTCAGTATA+CGG - chr5_1:56046716-56046735 Msa0738280:CDS 20.0%
!! TCATTCTCATTCCTTTTTAA+TGG - chr5_1:56038319-56038338 Msa0738280:three_prime_UTR 25.0%
! TGATATATACTGAGTAATGA+AGG - chr5_1:56038650-56038669 Msa0738280:CDS 25.0%
! TTTAATGTAATCACAAGTGT+CGG - chr5_1:56038885-56038904 Msa0738280:intron 25.0%
!!! TCTCGATAAGTTTTTTGTTT+GGG - chr5_1:56039284-56039303 Msa0738280:intron 25.0%
!!! GTAACAATTTTTTAACTTGC+AGG - chr5_1:56039408-56039427 Msa0738280:intron 25.0%
! ATCTAAACAGAAAAGGTTAT+AGG - chr5_1:56039436-56039455 Msa0738280:intron 25.0%
! TCTAAACAGAAAAGGTTATA+GGG - chr5_1:56039437-56039456 Msa0738280:intron 25.0%
!!! CCTCCAATTATAAAGTTTTT+TGG + chr5_1:56039470-56039489 None:intergenic 25.0%
! CCAAAAAACTTTATAATTGG+AGG - chr5_1:56039467-56039486 Msa0738280:intron 25.0%
! CCAAATTTGTGGTTAATAAA+AGG + chr5_1:56039512-56039531 None:intergenic 25.0%
!! CCTTTTATTAACCACAAATT+TGG - chr5_1:56039509-56039528 Msa0738280:intron 25.0%
!! ATCATTTCTCATTTGGATTT+TGG - chr5_1:56039711-56039730 Msa0738280:intron 25.0%
!!! ATGATATCTTAAGTTGGATA+TGG - chr5_1:56039833-56039852 Msa0738280:intron 25.0%
!!! TGATATCTTAAGTTGGATAT+GGG - chr5_1:56039834-56039853 Msa0738280:intron 25.0%
! GTAGATTATGTAATAGGAAA+AGG - chr5_1:56039909-56039928 Msa0738280:intron 25.0%
! ATAAAAGTGATGAGATAGAA+AGG - chr5_1:56039957-56039976 Msa0738280:intron 25.0%
!! GAAAAGGTATGAAAAAACAA+AGG + chr5_1:56040221-56040240 None:intergenic 25.0%
! AAATTGTATTGTCAAGGAAA+AGG + chr5_1:56040237-56040256 None:intergenic 25.0%
! TCAACAAGACATAAAACAAA+AGG + chr5_1:56040484-56040503 None:intergenic 25.0%
! AGTCAAAAAACCAAGTATAT+GGG - chr5_1:56040740-56040759 Msa0738280:intron 25.0%
!! TGAGATATTGAATAGTTTGT+TGG - chr5_1:56040908-56040927 Msa0738280:intron 25.0%
! CAGACAAAATTTACTTGATT+TGG + chr5_1:56040963-56040982 None:intergenic 25.0%
! AAAACTTTGATACCTCTATT+GGG + chr5_1:56041023-56041042 None:intergenic 25.0%
!! CTTTGTTATCGTAGAATAAT+AGG + chr5_1:56041071-56041090 None:intergenic 25.0%
!!! TTCTAGTTTTATTCACTTGT+AGG + chr5_1:56041502-56041521 None:intergenic 25.0%
! CATAGCAATTTATTATGCAT+TGG + chr5_1:56041690-56041709 None:intergenic 25.0%
!! AATAAATTGCTATGCTTTTG+GGG - chr5_1:56041696-56041715 Msa0738280:CDS 25.0%
!! AAATAATGCCACTTATTCAT+TGG - chr5_1:56041831-56041850 Msa0738280:CDS 25.0%
! GTTACAAGGAATAATAAACA+CGG + chr5_1:56041969-56041988 None:intergenic 25.0%
! TACTCATAATTCATGAAAGA+AGG - chr5_1:56042225-56042244 Msa0738280:CDS 25.0%
! ACTCATAATTCATGAAAGAA+GGG - chr5_1:56042226-56042245 Msa0738280:CDS 25.0%
!!! ATTAAGCATATTTGTTTCTG+TGG - chr5_1:56042269-56042288 Msa0738280:CDS 25.0%
! TTAGACAAATAACAAAGACA+TGG + chr5_1:56042423-56042442 None:intergenic 25.0%
! CTAAATTAAATCCTTGAAAC+AGG - chr5_1:56042439-56042458 Msa0738280:intron 25.0%
! AAGTGTAACTAACAAAAATC+AGG + chr5_1:56042466-56042485 None:intergenic 25.0%
!! GATGGAAAAGATTGTAATTT+TGG + chr5_1:56042581-56042600 None:intergenic 25.0%
! GTACAATAGATGAGAAAATT+AGG + chr5_1:56042667-56042686 None:intergenic 25.0%
!! TTTTCTCATCTATTGTACTT+TGG - chr5_1:56042669-56042688 Msa0738280:intron 25.0%
! TTTCTCATCTATTGTACTTT+GGG - chr5_1:56042670-56042689 Msa0738280:intron 25.0%
! TTCAATATTTCCTATGTTAG+AGG - chr5_1:56042776-56042795 Msa0738280:intron 25.0%
! TGATGTAATAAAAATTCCCA+AGG - chr5_1:56042883-56042902 Msa0738280:intron 25.0%
! ATCCTTAAAAATCAAGTGTT+TGG - chr5_1:56042917-56042936 Msa0738280:intron 25.0%
! AAACTAAATAGAGGAAAGAT+AGG + chr5_1:56042990-56043009 None:intergenic 25.0%
! GCATATGAAAAACTAAATAG+AGG + chr5_1:56042999-56043018 None:intergenic 25.0%
!!! TTAGTTTTTCATATGCTCAA+AGG - chr5_1:56043003-56043022 Msa0738280:intron 25.0%
!!! ATCTGCATAACATTTGTTAT+AGG - chr5_1:56043215-56043234 Msa0738280:intron 25.0%
! ATAAATTTGGAGATGAATAC+AGG - chr5_1:56043238-56043257 Msa0738280:intron 25.0%
! AATAAATCGGATTGCAAATT+GGG + chr5_1:56043510-56043529 None:intergenic 25.0%
! GAAAAATGCTCACAATAAAT+CGG + chr5_1:56043523-56043542 None:intergenic 25.0%
! TTCATACTCTATTATCTCTT+AGG - chr5_1:56043562-56043581 Msa0738280:intron 25.0%
! TCATACTCTATTATCTCTTA+GGG - chr5_1:56043563-56043582 Msa0738280:intron 25.0%
! ATTCCTTCAAGTAAATTTCA+AGG - chr5_1:56043655-56043674 Msa0738280:intron 25.0%
! TATCCTTGAAATTTACTTGA+AGG + chr5_1:56043661-56043680 None:intergenic 25.0%
!!! AATATTTTTGTACCCAAACA+TGG + chr5_1:56043697-56043716 None:intergenic 25.0%
! GTATGATTTATTCCTATGAA+AGG + chr5_1:56043797-56043816 None:intergenic 25.0%
!!! TGACAATCTGAATTTGTTAA+AGG - chr5_1:56043914-56043933 Msa0738280:intron 25.0%
!!! AATCTGAATTTGTTAAAGGA+TGG - chr5_1:56043918-56043937 Msa0738280:intron 25.0%
! GGATGCATATAATAAACTTT+AGG - chr5_1:56044233-56044252 Msa0738280:intron 25.0%
!! CATATAATAAACTTTAGGGA+TGG - chr5_1:56044238-56044257 Msa0738280:intron 25.0%
! ATTATGTGGTTTGAAAAAAC+AGG + chr5_1:56044271-56044290 None:intergenic 25.0%
!!! AATTTTGATGCTTAATTTGG+TGG - chr5_1:56044416-56044435 Msa0738280:intron 25.0%
!!! TTATTTTGATCTTGACTCTT+AGG - chr5_1:56044991-56045010 Msa0738280:intron 25.0%
!!! AGTATCGATTTTATCTCAAA+TGG + chr5_1:56045034-56045053 None:intergenic 25.0%
! CAAAATAATAGCTCCAAATT+TGG - chr5_1:56045332-56045351 Msa0738280:intron 25.0%
! GAATAATGTCATCTTTGAAT+CGG + chr5_1:56045406-56045425 None:intergenic 25.0%
! TGAAATAACACTCATTAATC+TGG + chr5_1:56045821-56045840 None:intergenic 25.0%
!! GATTTAAAAACTTTTTGTGG+AGG + chr5_1:56046074-56046093 None:intergenic 25.0%
! AAATGTATATTCATACATGC+AGG + chr5_1:56046261-56046280 None:intergenic 25.0%
! ACATAAAAAGAAGTAAAGGA+AGG + chr5_1:56046361-56046380 None:intergenic 25.0%
! TTTCATCTATAAATGGGAAA+GGG + chr5_1:56046623-56046642 None:intergenic 25.0%
!! TAGTTGAAAATTTTCATCAC+TGG - chr5_1:56046883-56046902 Msa0738280:five_prime_UTR 25.0%
GGAATGAGAATGATGAAAAT+GGG + chr5_1:56038312-56038331 None:intergenic 30.0%
AGGAATGAGAATGATGAAAA+TGG + chr5_1:56038313-56038332 None:intergenic 30.0%
! ATTCCTTTTTAATGGCGTTA+GGG - chr5_1:56038327-56038346 Msa0738280:three_prime_UTR 30.0%
GAATTACGAAAACGATTAGA+AGG + chr5_1:56038486-56038505 None:intergenic 30.0%
ATAATTGGATTCGTTATGAG+TGG - chr5_1:56038748-56038767 Msa0738280:intron 30.0%
ACAGAGATTACAAGACTATT+TGG - chr5_1:56038935-56038954 Msa0738280:intron 30.0%
!!! TCTATTTTGGTAAATTAGCC+TGG - chr5_1:56039084-56039103 Msa0738280:intron 30.0%
AATACAACTCAGTTAGTAAC+TGG + chr5_1:56039184-56039203 None:intergenic 30.0%
!!! GTCTCGATAAGTTTTTTGTT+TGG - chr5_1:56039283-56039302 Msa0738280:intron 30.0%
TTCCCTGACATAAACATATT+GGG - chr5_1:56039337-56039356 Msa0738280:intron 30.0%
CTAAACAGAAAAGGTTATAG+GGG - chr5_1:56039438-56039457 Msa0738280:intron 30.0%
TTTGAACACCTGAAAATTTG+TGG + chr5_1:56039545-56039564 None:intergenic 30.0%
AGTTAAACACTTGACAATTG+TGG - chr5_1:56039574-56039593 Msa0738280:intron 30.0%
GAAGTGGTAGATTATGTAAT+AGG - chr5_1:56039903-56039922 Msa0738280:intron 30.0%
ATCAGAAGTGATGTTTAAGA+AGG - chr5_1:56040030-56040049 Msa0738280:intron 30.0%
TTCACACATTGTAGAAAGAA+TGG - chr5_1:56040175-56040194 Msa0738280:intron 30.0%
! GAGAAAGAAGCACATAAAAA+TGG - chr5_1:56040271-56040290 Msa0738280:CDS 30.0%
AAATGGAGAAACACAATCTT+TGG - chr5_1:56040288-56040307 Msa0738280:CDS 30.0%
TACAAATCAAAATGATGTGC+AGG - chr5_1:56040381-56040400 Msa0738280:intron 30.0%
TCACATTGATATGTAGAAGA+AGG - chr5_1:56040583-56040602 Msa0738280:CDS 30.0%
GAGTCAAAAAACCAAGTATA+TGG - chr5_1:56040739-56040758 Msa0738280:intron 30.0%
TTTGTATGGTAACACAACTT+GGG - chr5_1:56040847-56040866 Msa0738280:intron 30.0%
CAAAACTTTGATACCTCTAT+TGG + chr5_1:56041024-56041043 None:intergenic 30.0%
!!! CAATAGAGGTATCAAAGTTT+TGG - chr5_1:56041022-56041041 Msa0738280:intron 30.0%
ATTCTACGATAACAAAGTCT+TGG - chr5_1:56041074-56041093 Msa0738280:intron 30.0%
AGTGATTGTTAAACCAGAAT+TGG - chr5_1:56041192-56041211 Msa0738280:CDS 30.0%
AATCTTGGCAAATGTGTATT+GGG + chr5_1:56041234-56041253 None:intergenic 30.0%
GTTAGGAAATGGTAACATAA+TGG - chr5_1:56041302-56041321 Msa0738280:intron 30.0%
TAGAAGGGAAAACTTTGTTA+AGG - chr5_1:56041532-56041551 Msa0738280:intron 30.0%
AGAAGGGAAAACTTTGTTAA+GGG - chr5_1:56041533-56041552 Msa0738280:intron 30.0%
! TTTTCTGACGAAAAGAAGAT+TGG - chr5_1:56041592-56041611 Msa0738280:intron 30.0%
!!! TTGGAAATTTTAATTGAGGG+TGG - chr5_1:56041611-56041630 Msa0738280:intron 30.0%
! TTTTGAACTTCTTCCAAAGA+TGG + chr5_1:56041782-56041801 None:intergenic 30.0%
! GTTCAAAATTTTCAATGGTG+TGG - chr5_1:56041794-56041813 Msa0738280:intron 30.0%
TGAGATGATGAATATTTGGT+TGG - chr5_1:56042072-56042091 Msa0738280:intron 30.0%
AAAATCTGCACAACAAAGAA+GGG + chr5_1:56042184-56042203 None:intergenic 30.0%
AAAAATCTGCACAACAAAGA+AGG + chr5_1:56042185-56042204 None:intergenic 30.0%
TGCTTAATTGCAACTGAAAA+GGG + chr5_1:56042257-56042276 None:intergenic 30.0%
ATGCTTAATTGCAACTGAAA+AGG + chr5_1:56042258-56042277 None:intergenic 30.0%
! ACAAAGACATGGACTAATTA+GGG + chr5_1:56042412-56042431 None:intergenic 30.0%
! AACAAAGACATGGACTAATT+AGG + chr5_1:56042413-56042432 None:intergenic 30.0%
AAACTCTGTTCTTAAGAGTA+AGG - chr5_1:56042631-56042650 Msa0738280:intron 30.0%
!!! AGGATTTCGATTTTTTCCTT+GGG + chr5_1:56042902-56042921 None:intergenic 30.0%
!!! AAGGATTTCGATTTTTTCCT+TGG + chr5_1:56042903-56042922 None:intergenic 30.0%
! AGCCAAACACTTGATTTTTA+AGG + chr5_1:56042922-56042941 None:intergenic 30.0%
! GTTCAGAAGTTATTTCAACA+TGG + chr5_1:56043190-56043209 None:intergenic 30.0%
ACTTAACTCCTTCAAAATTG+TGG - chr5_1:56043349-56043368 Msa0738280:intron 30.0%
! ACAATGATCCACAATTTTGA+AGG + chr5_1:56043360-56043379 None:intergenic 30.0%
ATAAATCGGATTGCAAATTG+GGG + chr5_1:56043509-56043528 None:intergenic 30.0%
CAATAAATCGGATTGCAAAT+TGG + chr5_1:56043511-56043530 None:intergenic 30.0%
CATACTCTATTATCTCTTAG+GGG - chr5_1:56043564-56043583 Msa0738280:intron 30.0%
TCCTAACAAATACCATGTTT+GGG - chr5_1:56043682-56043701 Msa0738280:intron 30.0%
TGATTTATTCCTATGAAAGG+TGG + chr5_1:56043794-56043813 None:intergenic 30.0%
! CATATCATAGATGCATTTTG+AGG - chr5_1:56043851-56043870 Msa0738280:intron 30.0%
GATAATAAGTGCAGTAACAA+GGG + chr5_1:56043955-56043974 None:intergenic 30.0%
CTTGTTACTGCACTTATTAT+CGG - chr5_1:56043954-56043973 Msa0738280:intron 30.0%
TTGTTACTGCACTTATTATC+GGG - chr5_1:56043955-56043974 Msa0738280:intron 30.0%
!!! TGGTATTGGTCAATTTGTTT+TGG - chr5_1:56044353-56044372 Msa0738280:intron 30.0%
TTTAAGCTTGCATTCATTTG+TGG - chr5_1:56044693-56044712 Msa0738280:intron 30.0%
!! GTTTTAGCAAGATTGTTTCT+TGG - chr5_1:56044804-56044823 Msa0738280:CDS 30.0%
! GAGAATTTCTTTTGCCATAT+GGG - chr5_1:56044941-56044960 Msa0738280:intron 30.0%
! AGAATTTCTTTTGCCATATG+GGG - chr5_1:56044942-56044961 Msa0738280:intron 30.0%
TATTAAATGTGATGACTGAG+TGG + chr5_1:56045105-56045124 None:intergenic 30.0%
! AAAAGTGAAACATGATTTGC+CGG - chr5_1:56045142-56045161 Msa0738280:intron 30.0%
TTAATGTTGTGTGTCTAAAG+AGG + chr5_1:56045276-56045295 None:intergenic 30.0%
CAAGTGAATGAAACCAAATT+TGG + chr5_1:56045348-56045367 None:intergenic 30.0%
! CTTTGAATCGGATTCTAAAA+TGG + chr5_1:56045394-56045413 None:intergenic 30.0%
! CAAGCTTTTGATGTTCATAA+AGG + chr5_1:56045480-56045499 None:intergenic 30.0%
CTTTATGAACATCAAAAGCT+TGG - chr5_1:56045478-56045497 Msa0738280:intron 30.0%
! CTATGGTTCTATATAGTCTA+TGG + chr5_1:56045798-56045817 None:intergenic 30.0%
GAAAAATGGTGGCTAAAATA+TGG + chr5_1:56045921-56045940 None:intergenic 30.0%
AGTTATGAGTGCTTATGAAA+AGG + chr5_1:56046125-56046144 None:intergenic 30.0%
CATAACTGTAAATGTCCAAT+TGG - chr5_1:56046138-56046157 Msa0738280:intron 30.0%
AAGGAAGGCAATGATATAAA+TGG + chr5_1:56046346-56046365 None:intergenic 30.0%
CTAACTTAAGTCTATTTCAC+AGG - chr5_1:56046389-56046408 Msa0738280:intron 30.0%
TTAATGATGTAGCTTTCTAC+TGG - chr5_1:56046466-56046485 Msa0738280:intron 30.0%
TAATGATGTAGCTTTCTACT+GGG - chr5_1:56046467-56046486 Msa0738280:intron 30.0%
! TCAGTTATTTCATCTGATAG+AGG + chr5_1:56046531-56046550 None:intergenic 30.0%
GTTTCATCTATAAATGGGAA+AGG + chr5_1:56046624-56046643 None:intergenic 30.0%
CAAGGGTTTCATCTATAAAT+GGG + chr5_1:56046629-56046648 None:intergenic 30.0%
AATGTATCAAAACATACCCT+TGG - chr5_1:56046749-56046768 Msa0738280:CDS 30.0%
! AAGTTTTGCAAATGAACCAA+GGG + chr5_1:56046768-56046787 None:intergenic 30.0%
TTAAGAACTGAAGTTGAGGT+AGG + chr5_1:56038282-56038301 None:intergenic 35.0%
GAAGTTAAGAACTGAAGTTG+AGG + chr5_1:56038286-56038305 None:intergenic 35.0%
! CATTCCTTTTTAATGGCGTT+AGG - chr5_1:56038326-56038345 Msa0738280:three_prime_UTR 35.0%
AAACCCTAACGCCATTAAAA+AGG + chr5_1:56038333-56038352 None:intergenic 35.0%
! GAGATTCATGGTTTTCGATT+TGG + chr5_1:56038382-56038401 None:intergenic 35.0%
TGTAGTGTTAATGAGTCTGA+TGG - chr5_1:56038567-56038586 Msa0738280:CDS 35.0%
TGATTACAAGCTATGAAGCA+CGG - chr5_1:56038797-56038816 Msa0738280:intron 35.0%
ACACTTAAGTGTGGAAAAGT+GGG - chr5_1:56039120-56039139 Msa0738280:intron 35.0%
!!! TCATCGATGTAGTTTTGTTG+AGG - chr5_1:56039212-56039231 Msa0738280:intron 35.0%
CTTCCCTGACATAAACATAT+TGG - chr5_1:56039336-56039355 Msa0738280:intron 35.0%
TGCCCAATATGTTTATGTCA+GGG + chr5_1:56039342-56039361 None:intergenic 35.0%
TTGCCCAATATGTTTATGTC+AGG + chr5_1:56039343-56039362 None:intergenic 35.0%
CATAAACATATTGGGCAATG+TGG - chr5_1:56039345-56039364 Msa0738280:intron 35.0%
GGCGTTAATCTAAACAGAAA+AGG - chr5_1:56039429-56039448 Msa0738280:intron 35.0%
! GTGATCAACCACAAATTTTC+AGG - chr5_1:56039534-56039553 Msa0738280:intron 35.0%
! CTTGAAGAATTTAAGATCCC+AGG - chr5_1:56039770-56039789 Msa0738280:intron 35.0%
!! TTAAGTTGGATATGGGTTGT+GGG - chr5_1:56039841-56039860 Msa0738280:intron 35.0%
GAAAAGGAAACAGACACAAA+GGG - chr5_1:56039925-56039944 Msa0738280:intron 35.0%
AGTATAGATACTTTCGCTGT+AGG + chr5_1:56040773-56040792 None:intergenic 35.0%
!!! ATTTCTTTTCACTCTGGAGT+TGG - chr5_1:56040815-56040834 Msa0738280:intron 35.0%
!!! TTTCTTTTCACTCTGGAGTT+GGG - chr5_1:56040816-56040835 Msa0738280:intron 35.0%
GTTTGTATGGTAACACAACT+TGG - chr5_1:56040846-56040865 Msa0738280:intron 35.0%
TTGTATGGTAACACAACTTG+GGG - chr5_1:56040848-56040867 Msa0738280:intron 35.0%
TCTGCTCTACAATTTCTTTG+TGG - chr5_1:56040979-56040998 Msa0738280:intron 35.0%
TGACAACTCTCAAACAAATG+TGG - chr5_1:56041148-56041167 Msa0738280:CDS 35.0%
TGTTAAACCAGAATTGGTGA+TGG - chr5_1:56041198-56041217 Msa0738280:CDS 35.0%
! GTTAAACCAGAATTGGTGAT+GGG - chr5_1:56041199-56041218 Msa0738280:CDS 35.0%
ATCTTGGCAAATGTGTATTG+GGG + chr5_1:56041233-56041252 None:intergenic 35.0%
CAATCTTGGCAAATGTGTAT+TGG + chr5_1:56041235-56041254 None:intergenic 35.0%
ATACACATTTGCCAAGATTG+AGG - chr5_1:56041235-56041254 Msa0738280:CDS 35.0%
!! AAACACGCCATTAGTCTTTA+CGG + chr5_1:56041271-56041290 None:intergenic 35.0%
TAAAGACTAATGGCGTGTTT+GGG - chr5_1:56041271-56041290 Msa0738280:intron 35.0%
!! GGTAACATAATGGATGTTGA+AGG - chr5_1:56041312-56041331 Msa0738280:intron 35.0%
TCACTTGAGTAGAAGTTTGA+TGG - chr5_1:56041433-56041452 Msa0738280:intron 35.0%
TGCAAGGTGTATAGTACATA+AGG - chr5_1:56041469-56041488 Msa0738280:intron 35.0%
GCAAGGTGTATAGTACATAA+GGG - chr5_1:56041470-56041489 Msa0738280:intron 35.0%
TTCTGATACTCATCCATCTT+TGG - chr5_1:56041766-56041785 Msa0738280:intron 35.0%
CTTTACAGCCAATGAATAAG+TGG + chr5_1:56041842-56041861 None:intergenic 35.0%
TCACATGACCCTTTATATAG+TGG + chr5_1:56041876-56041895 None:intergenic 35.0%
ATTCCTTGTAACTCTTGAGT+AGG - chr5_1:56041977-56041996 Msa0738280:intron 35.0%
TTCCTTGTAACTCTTGAGTA+GGG - chr5_1:56041978-56041997 Msa0738280:intron 35.0%
AGTAGGGTATACGAATCTTT+GGG - chr5_1:56041994-56042013 Msa0738280:intron 35.0%
CTTAATTGCAACTGAAAAGG+GGG + chr5_1:56042255-56042274 None:intergenic 35.0%
GCTTAATTGCAACTGAAAAG+GGG + chr5_1:56042256-56042275 None:intergenic 35.0%
AAAAATCAGGTCCTGTTTCA+AGG + chr5_1:56042453-56042472 None:intergenic 35.0%
AATATAATCACCTTCACACC+TGG + chr5_1:56042751-56042770 None:intergenic 35.0%
ATTACATCATCCAGTTGTTG+AGG + chr5_1:56042872-56042891 None:intergenic 35.0%
TCTGGTTGTAAAGTAGTTCT+TGG + chr5_1:56043315-56043334 None:intergenic 35.0%
GAGTATGAAGTGACAAGAAA+AGG + chr5_1:56043551-56043570 None:intergenic 35.0%
! CCACATGACAATGTTTTGTA+GGG + chr5_1:56043600-56043619 None:intergenic 35.0%
! ACCACATGACAATGTTTTGT+AGG + chr5_1:56043601-56043620 None:intergenic 35.0%
GTCCTAACAAATACCATGTT+TGG - chr5_1:56043681-56043700 Msa0738280:intron 35.0%
ACCCAAACATGGTATTTGTT+AGG + chr5_1:56043686-56043705 None:intergenic 35.0%
AATTCTGTTCCACCTTTCAT+AGG - chr5_1:56043782-56043801 Msa0738280:intron 35.0%
CGATAATAAGTGCAGTAACA+AGG + chr5_1:56043956-56043975 None:intergenic 35.0%
TGTTACTGCACTTATTATCG+GGG - chr5_1:56043956-56043975 Msa0738280:intron 35.0%
! AAGCTTAACTCCAAGGTTTT+GGG + chr5_1:56044009-56044028 None:intergenic 35.0%
!! TTTGGTGACATGTACGATTT+TGG - chr5_1:56044333-56044352 Msa0738280:intron 35.0%
!! GACATGTACGATTTTGGTAT+TGG - chr5_1:56044339-56044358 Msa0738280:intron 35.0%
!!! GCTCTTTTGGTTCAATTACA+AGG - chr5_1:56044446-56044465 Msa0738280:intron 35.0%
! TTTGTTATACCTCCAAGTGA+CGG - chr5_1:56044568-56044587 Msa0738280:intron 35.0%
!! ACAAGAGGGTTGATAGAAAT+TGG + chr5_1:56044852-56044871 None:intergenic 35.0%
! GGAGAATTTCTTTTGCCATA+TGG - chr5_1:56044940-56044959 Msa0738280:intron 35.0%
TTGATCTTGACTCTTAGGTT+TGG - chr5_1:56044996-56045015 Msa0738280:intron 35.0%
ATCTCAAATGGAACAACCAT+TGG + chr5_1:56045022-56045041 None:intergenic 35.0%
!!! TGATTTGCCGGTTTCTTTTT+TGG - chr5_1:56045154-56045173 Msa0738280:intron 35.0%
TTTCGGTCCAAAAAAGAAAC+CGG + chr5_1:56045164-56045183 None:intergenic 35.0%
GATCCTATTCGTATGTCTTT+CGG + chr5_1:56045181-56045200 None:intergenic 35.0%
AGTTGCTCATAACCTTGTTA+GGG + chr5_1:56045242-56045261 None:intergenic 35.0%
TGGTTTCATTCACTTGAGTA+TGG - chr5_1:56045352-56045371 Msa0738280:intron 35.0%
!! TGAATCGGATTCTAAAATGG+TGG + chr5_1:56045391-56045410 None:intergenic 35.0%
CATTTAATCCAAACAGCTCT+CGG - chr5_1:56045605-56045624 Msa0738280:intron 35.0%
! TGGTTCTATATAGTCTATGG+CGG + chr5_1:56045795-56045814 None:intergenic 35.0%
AACACTCATTAATCTGGCTA+TGG + chr5_1:56045815-56045834 None:intergenic 35.0%
!!! AAAACCTTATTTTTCGCTGC+AGG + chr5_1:56045846-56045865 None:intergenic 35.0%
TAGGACAACTTAAGGAAAAG+AGG - chr5_1:56045946-56045965 Msa0738280:intron 35.0%
AAACAAGAGTGAGAGACAAA+GGG + chr5_1:56046026-56046045 None:intergenic 35.0%
AAAACAAGAGTGAGAGACAA+AGG + chr5_1:56046027-56046046 None:intergenic 35.0%
AACTGTAAATGTCCAATTGG+AGG - chr5_1:56046141-56046160 Msa0738280:intron 35.0%
CTCGAGAGGATAAAAGAATT+TGG + chr5_1:56046174-56046193 None:intergenic 35.0%
CTGATATTCTTCTTGCAAAG+AGG - chr5_1:56046495-56046514 Msa0738280:intron 35.0%
TCATCTGATAGAGGAGAAAT+TGG + chr5_1:56046522-56046541 None:intergenic 35.0%
! GGAATAACAGTTTTGCTCTT+AGG - chr5_1:56046576-56046595 Msa0738280:CDS 35.0%
TCTATAAATGGGAAAGGGTA+TGG + chr5_1:56046618-56046637 None:intergenic 35.0%
GCAAGGGTTTCATCTATAAA+TGG + chr5_1:56046630-56046649 None:intergenic 35.0%
!! CTGTTTCTAGAAACTTGCAA+GGG + chr5_1:56046646-56046665 None:intergenic 35.0%
!! ACTGTTTCTAGAAACTTGCA+AGG + chr5_1:56046647-56046666 None:intergenic 35.0%
! TTGCAAGTTTCTAGAAACAG+TGG - chr5_1:56046646-56046665 Msa0738280:CDS 35.0%
! TTTGAAACTCAGTATACGGT+AGG - chr5_1:56046720-56046739 Msa0738280:CDS 35.0%
! GAAGTTTTGCAAATGAACCA+AGG + chr5_1:56046769-56046788 None:intergenic 35.0%
AAGTTGAGGTAGGAAGAAGA+AGG + chr5_1:56038272-56038291 None:intergenic 40.0%
TGAAGGTAGTGAGAGATTCA+TGG + chr5_1:56038394-56038413 None:intergenic 40.0%
! TTGAAAGCAAGAAGTGCAGT+GGG + chr5_1:56038445-56038464 None:intergenic 40.0%
! ATTGAAAGCAAGAAGTGCAG+TGG + chr5_1:56038446-56038465 None:intergenic 40.0%
TTGAAGTTGAATCCTCCTAC+AGG - chr5_1:56038519-56038538 Msa0738280:CDS 40.0%
CTTCTTCTTCTTCTTCCTGT+AGG + chr5_1:56038537-56038556 None:intergenic 40.0%
CAGGAAGAAGAAGAAGAAGA+CGG - chr5_1:56038538-56038557 Msa0738280:CDS 40.0%
ATTGGATTCGTTATGAGTGG+TGG - chr5_1:56038751-56038770 Msa0738280:intron 40.0%
TGAAGCACGGAAACAAACAT+TGG - chr5_1:56038810-56038829 Msa0738280:intron 40.0%
CACACTTAAGTGTGGAAAAG+TGG - chr5_1:56039119-56039138 Msa0738280:intron 40.0%
TGTGGAAAAGTGGGTAATCT+GGG - chr5_1:56039129-56039148 Msa0738280:intron 40.0%
GAAGTATGTTGATACGCAAC+GGG + chr5_1:56039162-56039181 None:intergenic 40.0%
! GGAAGTATGTTGATACGCAA+CGG + chr5_1:56039163-56039182 None:intergenic 40.0%
TTGAGTTACGTATGCTGTCA+AGG - chr5_1:56039378-56039397 Msa0738280:intron 40.0%
GTTGATCACGTCCAAATTTG+TGG + chr5_1:56039523-56039542 None:intergenic 40.0%
GTCCCAAATGATGTTGTGAA+GGG - chr5_1:56039792-56039811 Msa0738280:intron 40.0%
CTCCCTTCACAACATCATTT+GGG + chr5_1:56039797-56039816 None:intergenic 40.0%
ACTCCCTTCACAACATCATT+TGG + chr5_1:56039798-56039817 None:intergenic 40.0%
!! CTTAAGTTGGATATGGGTTG+TGG - chr5_1:56039840-56039859 Msa0738280:intron 40.0%
AGGAAAGAAAGTGAGAGAAG+TGG - chr5_1:56039887-56039906 Msa0738280:intron 40.0%
GGAAAAGGAAACAGACACAA+AGG - chr5_1:56039924-56039943 Msa0738280:intron 40.0%
TGGAGAAACACAATCTTTGG+AGG - chr5_1:56040291-56040310 Msa0738280:CDS 40.0%
TTTAGCTGTTCTGCATCTAC+AGG + chr5_1:56040343-56040362 None:intergenic 40.0%
!! TCCAAAAGCGCTATTGCTTA+TGG - chr5_1:56040510-56040529 Msa0738280:intron 40.0%
!! CCAAAAGCGCTATTGCTTAT+GGG - chr5_1:56040511-56040530 Msa0738280:intron 40.0%
GTCCACTTCTTCATTGTTGA+AGG - chr5_1:56040655-56040674 Msa0738280:CDS 40.0%
GTCCTTCAACAATGAAGAAG+TGG + chr5_1:56040660-56040679 None:intergenic 40.0%
ATAGATACTTTCGCTGTAGG+TGG + chr5_1:56040770-56040789 None:intergenic 40.0%
!! AGTTTGTTGGAGTGTTTCCA+TGG - chr5_1:56040921-56040940 Msa0738280:intron 40.0%
GCAGCTATTTATTGTGTCCA+TGG + chr5_1:56040941-56040960 None:intergenic 40.0%
GTGTCGAATATCCTCAATCT+TGG + chr5_1:56041249-56041268 None:intergenic 40.0%
TTCGACACCGTAAAGACTAA+TGG - chr5_1:56041261-56041280 Msa0738280:intron 40.0%
GTAAAGACTAATGGCGTGTT+TGG - chr5_1:56041270-56041289 Msa0738280:intron 40.0%
AAAGACTAATGGCGTGTTTG+GGG - chr5_1:56041272-56041291 Msa0738280:intron 40.0%
!! GTGTTTGGGGATTTCAAGTT+AGG - chr5_1:56041285-56041304 Msa0738280:intron 40.0%
!! GGGGATTTCAAGTTAGGAAA+TGG - chr5_1:56041291-56041310 Msa0738280:intron 40.0%
! GAAGTTTGATGGTCCAAAGT+AGG - chr5_1:56041444-56041463 Msa0738280:intron 40.0%
TACACCTTGCAAACCTACTT+TGG + chr5_1:56041460-56041479 None:intergenic 40.0%
GTGTATAGTACATAAGGGCT+TGG - chr5_1:56041475-56041494 Msa0738280:intron 40.0%
ACAACCCGCCACTATATAAA+GGG - chr5_1:56041865-56041884 Msa0738280:CDS 40.0%
ATGACCCTTTATATAGTGGC+GGG + chr5_1:56041872-56041891 None:intergenic 40.0%
CATGACCCTTTATATAGTGG+CGG + chr5_1:56041873-56041892 None:intergenic 40.0%
TACCCTACTCAAGAGTTACA+AGG + chr5_1:56041983-56042002 None:intergenic 40.0%
GAGTAGGGTATACGAATCTT+TGG - chr5_1:56041993-56042012 Msa0738280:intron 40.0%
GTAGGGTATACGAATCTTTG+GGG - chr5_1:56041995-56042014 Msa0738280:intron 40.0%
ATTTGGTTGGACTGTTTCCA+TGG - chr5_1:56042085-56042104 Msa0738280:intron 40.0%
TTGCTTGATGAAAATGCTCC+TGG - chr5_1:56042328-56042347 Msa0738280:intron 40.0%
CTCAATGTGAAACTGAAACC+AGG + chr5_1:56042349-56042368 None:intergenic 40.0%
CTGGTTTCAGTTTCACATTG+AGG - chr5_1:56042347-56042366 Msa0738280:intron 40.0%
GATAACATAGAAGTTGCCAG+TGG - chr5_1:56042715-56042734 Msa0738280:intron 40.0%
AGGCTGTTAGGGACATATAA+AGG + chr5_1:56042852-56042871 None:intergenic 40.0%
!! AGGTCTTGTTGCATGAAGAT+TGG - chr5_1:56043023-56043042 Msa0738280:intron 40.0%
!! GGTCTTGTTGCATGAAGATT+GGG - chr5_1:56043024-56043043 Msa0738280:intron 40.0%
TATTCAAAGGAAACCTGCGA+GGG - chr5_1:56043075-56043094 Msa0738280:intron 40.0%
TTTCCTTCTAGTCAATCCTG+AGG - chr5_1:56043263-56043282 Msa0738280:intron 40.0%
AGTAGTTCTTGGAACGACAA+CGG + chr5_1:56043304-56043323 None:intergenic 40.0%
AAGTAAGTACGAGTTGTCTC+TGG + chr5_1:56043333-56043352 None:intergenic 40.0%
!!! CTTTTTTAGCTGTACCTGAG+TGG - chr5_1:56043427-56043446 Msa0738280:intron 40.0%
CCCTACAAAACATTGTCATG+TGG - chr5_1:56043597-56043616 Msa0738280:intron 40.0%
CATACAACCTGTCTTTACTC+TGG - chr5_1:56043812-56043831 Msa0738280:intron 40.0%
TAGTCAACCAGAGTAAAGAC+AGG + chr5_1:56043822-56043841 None:intergenic 40.0%
CAGATTGTCAACAGTTGATC+TGG + chr5_1:56043904-56043923 None:intergenic 40.0%
ATTATCGGGGTACATGAACT+TGG - chr5_1:56043969-56043988 Msa0738280:intron 40.0%
!! TTTCTAGTTGCCCAAAACCT+TGG - chr5_1:56043996-56044015 Msa0738280:intron 40.0%
! CAAGCTTAACTCCAAGGTTT+TGG + chr5_1:56044010-56044029 None:intergenic 40.0%
CAAAACCTTGGAGTTAAGCT+TGG - chr5_1:56044008-56044027 Msa0738280:intron 40.0%
! TGCTTAATTTGGTGGCAGAT+AGG - chr5_1:56044424-56044443 Msa0738280:intron 40.0%
AACAAGACCCAATGCAAATC+CGG + chr5_1:56044533-56044552 None:intergenic 40.0%
!! TTTCACGAGTCATTTCTAGC+CGG - chr5_1:56044619-56044638 Msa0738280:intron 40.0%
!! GTTTCTTGGTAACGTTCTCA+AGG - chr5_1:56044818-56044837 Msa0738280:CDS 40.0%
TATCAACCCTCTTGTGATCT+GGG - chr5_1:56044857-56044876 Msa0738280:CDS 40.0%
!! TACTGTTGATGGCATTGATG+AGG + chr5_1:56044896-56044915 None:intergenic 40.0%
! TTTTGCCATATGGGGAAGAA+AGG - chr5_1:56044950-56044969 Msa0738280:intron 40.0%
GAGTTGCTCATAACCTTGTT+AGG + chr5_1:56045243-56045262 None:intergenic 40.0%
AAGGTTATGAGCAACTCCAT+TGG - chr5_1:56045246-56045265 Msa0738280:intron 40.0%
AGGTTATGAGCAACTCCATT+GGG - chr5_1:56045247-56045266 Msa0738280:intron 40.0%
!! GATTCTAAAATGGTGGTGGA+TGG + chr5_1:56045384-56045403 None:intergenic 40.0%
!! ATCGGATTCTAAAATGGTGG+TGG + chr5_1:56045388-56045407 None:intergenic 40.0%
GTTCATAAAGGTGAAGCCTT+GGG + chr5_1:56045468-56045487 None:intergenic 40.0%
TGTTCATAAAGGTGAAGCCT+TGG + chr5_1:56045469-56045488 None:intergenic 40.0%
! ATATGCATCTGGAATGAGCA+TGG + chr5_1:56045536-56045555 None:intergenic 40.0%
TAGGTCTTGGTATATGCATC+TGG + chr5_1:56045547-56045566 None:intergenic 40.0%
CAAACCTGCAGCGAAAAATA+AGG - chr5_1:56045839-56045858 Msa0738280:intron 40.0%
! AGCTGTATTGCTGTCAGTTT+TGG - chr5_1:56045876-56045895 Msa0738280:intron 40.0%
! ATATGGCTTGCAGAATACCT+CGG + chr5_1:56045904-56045923 None:intergenic 40.0%
GTTGTCCTAGAAGCGAAAAA+TGG + chr5_1:56045935-56045954 None:intergenic 40.0%
!! TTCGCTTCTAGGACAACTTA+AGG - chr5_1:56045938-56045957 Msa0738280:intron 40.0%
AATCAAGCAAGGAGAACACT+TGG + chr5_1:56045972-56045991 None:intergenic 40.0%
TGAGTGTCCTTATGTCTGTA+CGG + chr5_1:56046001-56046020 None:intergenic 40.0%
AACAAGAGTGAGAGACAAAG+GGG + chr5_1:56046025-56046044 None:intergenic 40.0%
! TTGGTGGCACCTTTAAATCT+TGG - chr5_1:56046094-56046113 Msa0738280:intron 40.0%
! AAGGTGCCACCAAGATTTAA+AGG + chr5_1:56046087-56046106 None:intergenic 40.0%
TGTAAATGTCCAATTGGAGG+AGG - chr5_1:56046144-56046163 Msa0738280:intron 40.0%
TAAGAAACTAGCAACTCGAG+AGG + chr5_1:56046188-56046207 None:intergenic 40.0%
CATGCAGGTACATAATCAAG+AGG + chr5_1:56046246-56046265 None:intergenic 40.0%
!! GGATTTTCGATTGTGTTGCT+TGG - chr5_1:56046429-56046448 Msa0738280:intron 40.0%
AGAGCAACATACTTGTCATC+AGG + chr5_1:56046555-56046574 None:intergenic 40.0%
GATGACAAGTATGTTGCTCT+CGG - chr5_1:56046555-56046574 Msa0738280:intron 40.0%
AACATTTCGCACTGAACAAC+TGG + chr5_1:56046863-56046882 None:intergenic 40.0%
CTTCTTCTTCTTCCTGTAGG+AGG + chr5_1:56038534-56038553 None:intergenic 45.0%
! GTCTGATGGTGATAAAGACG+AGG - chr5_1:56038581-56038600 Msa0738280:CDS 45.0%
! CGTTATGAGTGGTGGCATTT+TGG - chr5_1:56038759-56038778 Msa0738280:intron 45.0%
GAGACTCACACACTTAAGTG+TGG - chr5_1:56039111-56039130 Msa0738280:intron 45.0%
GTGTGGAAAAGTGGGTAATC+TGG - chr5_1:56039128-56039147 Msa0738280:intron 45.0%
GTGGAAAAGTGGGTAATCTG+GGG - chr5_1:56039130-56039149 Msa0738280:intron 45.0%
! CACAACATCATTTGGGACCT+GGG + chr5_1:56039790-56039809 None:intergenic 45.0%
! TCACAACATCATTTGGGACC+TGG + chr5_1:56039791-56039810 None:intergenic 45.0%
GGTCCCAAATGATGTTGTGA+AGG - chr5_1:56039791-56039810 Msa0738280:intron 45.0%
! CCCATAAGCAATAGCGCTTT+TGG + chr5_1:56040514-56040533 None:intergenic 45.0%
! ACACCCCACAACTCTAAAGA+AGG - chr5_1:56040678-56040697 Msa0738280:CDS 45.0%
! CACCCCACAACTCTAAAGAA+GGG - chr5_1:56040679-56040698 Msa0738280:CDS 45.0%
!! AGCCCTTCTTTAGAGTTGTG+GGG + chr5_1:56040684-56040703 None:intergenic 45.0%
!! GAGCCCTTCTTTAGAGTTGT+GGG + chr5_1:56040685-56040704 None:intergenic 45.0%
!! AGAGCCCTTCTTTAGAGTTG+TGG + chr5_1:56040686-56040705 None:intergenic 45.0%
AGGTGGATCACCCATATACT+TGG + chr5_1:56040753-56040772 None:intergenic 45.0%
GTTGGGCACTCAAGTTTGTA+TGG - chr5_1:56040833-56040852 Msa0738280:intron 45.0%
TATGGTAACACAACTTGGGG+TGG - chr5_1:56040851-56040870 Msa0738280:intron 45.0%
TTGCGTGTGTTTCCCAATAG+AGG - chr5_1:56041008-56041027 Msa0738280:intron 45.0%
GTAGAACCCATCACCAATTC+TGG + chr5_1:56041208-56041227 None:intergenic 45.0%
ACATATGAACTGCAGCATCG+TGG + chr5_1:56041362-56041381 None:intergenic 45.0%
TTCATATGTCCCAGGATGCA+AGG - chr5_1:56041373-56041392 Msa0738280:intron 45.0%
TGATGCCAACATCGTCTCTT+TGG - chr5_1:56041400-56041419 Msa0738280:intron 45.0%
TCTCTCCAAAGAGACGATGT+TGG + chr5_1:56041408-56041427 None:intergenic 45.0%
TGGTCCAAAGTAGGTTTGCA+AGG - chr5_1:56041453-56041472 Msa0738280:intron 45.0%
CACAACCCGCCACTATATAA+AGG - chr5_1:56041864-56041883 Msa0738280:CDS 45.0%
GAGAAATGAGCATGTGTGAG+CGG - chr5_1:56041915-56041934 Msa0738280:intron 45.0%
TGTGTGAGCGGTCATGTATT+AGG - chr5_1:56041927-56041946 Msa0738280:intron 45.0%
AGGGAGAATGCCTCTAACAT+AGG + chr5_1:56042789-56042808 None:intergenic 45.0%
TCCAGTTGTTGAGGCTGTTA+GGG + chr5_1:56042863-56042882 None:intergenic 45.0%
ATCCAGTTGTTGAGGCTGTT+AGG + chr5_1:56042864-56042883 None:intergenic 45.0%
AACAAGCCAAGATCCTTACG+AGG - chr5_1:56042958-56042977 Msa0738280:intron 45.0%
! TGGGTCCTGATTTTTCTGCT+AGG - chr5_1:56043043-56043062 Msa0738280:intron 45.0%
! GGGTCCTGATTTTTCTGCTA+GGG - chr5_1:56043044-56043063 Msa0738280:intron 45.0%
! TCCTGATTTTTCTGCTAGGG+TGG - chr5_1:56043047-56043066 Msa0738280:intron 45.0%
TCCACCCTAGCAGAAAAATC+AGG + chr5_1:56043051-56043070 None:intergenic 45.0%
! TAGGGTGGAGTGCTATTCAA+AGG - chr5_1:56043062-56043081 Msa0738280:intron 45.0%
CTATTCAAAGGAAACCTGCG+AGG - chr5_1:56043074-56043093 Msa0738280:intron 45.0%
!! TTTTAGAAGCTTTCCCTCGC+AGG + chr5_1:56043091-56043110 None:intergenic 45.0%
CATCCTCAGGATTGACTAGA+AGG + chr5_1:56043269-56043288 None:intergenic 45.0%
TTAGCTGTACCTGAGTGGTT+TGG - chr5_1:56043432-56043451 Msa0738280:intron 45.0%
TTGTTAAAGGATGGCCTACC+TGG - chr5_1:56043927-56043946 Msa0738280:intron 45.0%
TGCCAGCTAGGAACAAAGTA+CGG + chr5_1:56044038-56044057 None:intergenic 45.0%
TATCATACAACCTGCCAGCT+AGG + chr5_1:56044050-56044069 None:intergenic 45.0%
ACCAATTGCCGGATTTGCAT+TGG - chr5_1:56044522-56044541 Msa0738280:intron 45.0%
CCAATTGCCGGATTTGCATT+GGG - chr5_1:56044523-56044542 Msa0738280:intron 45.0%
!! GGTCTTGTTCTTCTGCTTCT+AGG - chr5_1:56044544-56044563 Msa0738280:intron 45.0%
ATACCTCCAAGTGACGGTAT+TGG - chr5_1:56044574-56044593 Msa0738280:intron 45.0%
ACAACACCAATACCGTCACT+TGG + chr5_1:56044583-56044602 None:intergenic 45.0%
ATATAGCTTACCAATGCCGC+CGG + chr5_1:56044641-56044660 None:intergenic 45.0%
!! CTTGGTAACGTTCTCAAGGA+AGG - chr5_1:56044822-56044841 Msa0738280:CDS 45.0%
CTATCAACCCTCTTGTGATC+TGG - chr5_1:56044856-56044875 Msa0738280:CDS 45.0%
ATTCCCGCTGGAGAAATTGA+TGG - chr5_1:56044915-56044934 Msa0738280:intron 45.0%
CGATACCTTTCTTCCCCATA+TGG + chr5_1:56044958-56044977 None:intergenic 45.0%
TGACTCTTAGGTTTGGCCAA+TGG - chr5_1:56045003-56045022 Msa0738280:intron 45.0%
GGACCGAAAGACATACGAAT+AGG - chr5_1:56045175-56045194 Msa0738280:intron 45.0%
TGCTCATAACCTTGTTAGGG+CGG + chr5_1:56045239-56045258 None:intergenic 45.0%
TGTCTAAAGAGGCAACCCAA+TGG + chr5_1:56045265-56045284 None:intergenic 45.0%
GTCTTTGGCATGCAATGATC+TGG + chr5_1:56045446-56045465 None:intergenic 45.0%
! GTTGCGTTTTCTCAGTACAC+AGG + chr5_1:56045575-56045594 None:intergenic 45.0%
AGCAAACGGCTGCTGTAATT+TGG + chr5_1:56045637-56045656 None:intergenic 45.0%
GGTGACAGTAGATTTGACAC+AGG + chr5_1:56045665-56045684 None:intergenic 45.0%
!! TATGCTTTGGGAGTCCATTC+AGG + chr5_1:56045762-56045781 None:intergenic 45.0%
GGAGTCGAATGCTATGCTTT+GGG + chr5_1:56045774-56045793 None:intergenic 45.0%
!! AGCCACCATTTTTCGCTTCT+AGG - chr5_1:56045927-56045946 Msa0738280:intron 45.0%
GTCCTAGAAGCGAAAAATGG+TGG + chr5_1:56045932-56045951 None:intergenic 45.0%
TACGGTTTGCGAATCAAGCA+AGG + chr5_1:56045983-56046002 None:intergenic 45.0%
TCGCAAACCGTACAGACATA+AGG - chr5_1:56045991-56046010 Msa0738280:intron 45.0%
GTGGCACCTTTAAATCTTGG+TGG - chr5_1:56046097-56046116 Msa0738280:intron 45.0%
TTTGGAAAGCCTCCTCCAAT+TGG + chr5_1:56046156-56046175 None:intergenic 45.0%
ACACTCTGGCAACATCACTA+TGG - chr5_1:56046679-56046698 Msa0738280:CDS 45.0%
!!! AAAACTTTTTATTTTTATAT+AGG - chr5_1:56040054-56040073 Msa0738280:intron 5.0%
AAGAAGAAGGAAGTGACGCG+AGG + chr5_1:56038259-56038278 None:intergenic 50.0%
ACGCGGAAAGTTGAAGGTGA+AGG + chr5_1:56038411-56038430 None:intergenic 50.0%
AGTGTGTGAGTCTCATCACC+AGG + chr5_1:56039105-56039124 None:intergenic 50.0%
TGCACGACGGAAAGAGTTAG+AGG - chr5_1:56039867-56039886 Msa0738280:intron 50.0%
GGAAACAGACACAAAGGGTG+AGG - chr5_1:56039930-56039949 Msa0738280:intron 50.0%
AACAGACACAAAGGGTGAGG+AGG - chr5_1:56039933-56039952 Msa0738280:intron 50.0%
! TGGAGGGTTACTTTGCTCAG+AGG + chr5_1:56040320-56040339 None:intergenic 50.0%
GTTCTGCATCTACAGGTGGA+GGG + chr5_1:56040336-56040355 None:intergenic 50.0%
TGTTCTGCATCTACAGGTGG+AGG + chr5_1:56040337-56040356 None:intergenic 50.0%
AGCTGTTCTGCATCTACAGG+TGG + chr5_1:56040340-56040359 None:intergenic 50.0%
TGCTGCAGTTCATATGTCCC+AGG - chr5_1:56041365-56041384 Msa0738280:intron 50.0%
CATCAGCAACCTTGCATCCT+GGG + chr5_1:56041385-56041404 None:intergenic 50.0%
! GGGTATACGAATCTTTGGGG+TGG - chr5_1:56041998-56042017 Msa0738280:intron 50.0%
!! CTTTGGGGTGGTACACATAG+TGG - chr5_1:56042010-56042029 Msa0738280:intron 50.0%
! GGTGGTACACATAGTGGAGA+GGG - chr5_1:56042016-56042035 Msa0738280:intron 50.0%
TTGGACTGTTTCCATGGACG+TGG - chr5_1:56042091-56042110 Msa0738280:intron 50.0%
TGGACTGTTTCCATGGACGT+GGG - chr5_1:56042092-56042111 Msa0738280:intron 50.0%
! GACACTTTTACCCACGTCCA+TGG + chr5_1:56042105-56042124 None:intergenic 50.0%
TCCCTAACAGCCTCAACAAC+TGG - chr5_1:56042859-56042878 Msa0738280:intron 50.0%
CACACACCTCGTAAGGATCT+TGG + chr5_1:56042967-56042986 None:intergenic 50.0%
AGATAGGCACACACCTCGTA+AGG + chr5_1:56042974-56042993 None:intergenic 50.0%
TCCTGAGGATGATAAGCCAG+TGG - chr5_1:56043278-56043297 Msa0738280:intron 50.0%
!!! TGGTTTGGTGCTGCGTCTTT+TGG - chr5_1:56043447-56043466 Msa0738280:intron 50.0%
GGACTCCAAGCTTAACTCCA+AGG + chr5_1:56044016-56044035 None:intergenic 50.0%
TCCCGTACTTTGTTCCTAGC+TGG - chr5_1:56044033-56044052 Msa0738280:intron 50.0%
GCCAGCTAGGAACAAAGTAC+GGG + chr5_1:56044037-56044056 None:intergenic 50.0%
GTACTTTGTTCCTAGCTGGC+AGG - chr5_1:56044037-56044056 Msa0738280:intron 50.0%
! TGGTGGCAGATAGGCTCTTT+TGG - chr5_1:56044433-56044452 Msa0738280:intron 50.0%
TTGCTCAAGATTGCAGCTGC+TGG - chr5_1:56044499-56044518 Msa0738280:intron 50.0%
CCCAATGCAAATCCGGCAAT+TGG + chr5_1:56044526-56044545 None:intergenic 50.0%
ACACCAATACCGTCACTTGG+AGG + chr5_1:56044580-56044599 None:intergenic 50.0%
TCCAGCGGGAATACTGTTGA+TGG + chr5_1:56044907-56044926 None:intergenic 50.0%
CCTCCATCAATTTCTCCAGC+GGG + chr5_1:56044921-56044940 None:intergenic 50.0%
CCCTCCATCAATTTCTCCAG+CGG + chr5_1:56044922-56044941 None:intergenic 50.0%
CCGCTGGAGAAATTGATGGA+GGG - chr5_1:56044919-56044938 Msa0738280:intron 50.0%
CATTGCATGCCAAAGACCCA+AGG - chr5_1:56045449-56045468 Msa0738280:intron 50.0%
AAGGTGAAGCCTTGGGTCTT+TGG + chr5_1:56045461-56045480 None:intergenic 50.0%
! TACACAGGAGGCATAGGTCT+TGG + chr5_1:56045560-56045579 None:intergenic 50.0%
! TCTCAGTACACAGGAGGCAT+AGG + chr5_1:56045566-56045585 None:intergenic 50.0%
! GCGTTTTCTCAGTACACAGG+AGG + chr5_1:56045572-56045591 None:intergenic 50.0%
TGACACAGGCAGACAGCAAA+CGG + chr5_1:56045651-56045670 None:intergenic 50.0%
ACGGCTAGAACAACTGCACA+CGG + chr5_1:56045686-56045705 None:intergenic 50.0%
AGACTTGGCAAGCTGGAACA+CGG + chr5_1:56045705-56045724 None:intergenic 50.0%
! GGAGAAGCCAGACCAGATTT+TGG + chr5_1:56045741-56045760 None:intergenic 50.0%
CGGAGTCGAATGCTATGCTT+TGG + chr5_1:56045775-56045794 None:intergenic 50.0%
!!! TGCTGTCAGTTTTGGTTCCG+AGG - chr5_1:56045884-56045903 Msa0738280:intron 50.0%
CAGGCTTCAATTCGCTTCAC+AGG - chr5_1:56046408-56046427 Msa0738280:intron 50.0%
GTTGCCAGAGTGTATGCATG+TGG + chr5_1:56046672-56046691 None:intergenic 50.0%
GGAACGACGCGGAAAGTTGA+AGG + chr5_1:56038417-56038436 None:intergenic 55.0%
! CAAGAAGTGCAGTGGGAGAG+AGG + chr5_1:56038438-56038457 None:intergenic 55.0%
GGGTTGTGGGTAATGCACGA+CGG - chr5_1:56039854-56039873 Msa0738280:intron 55.0%
GCATCAGCAACCTTGCATCC+TGG + chr5_1:56041386-56041405 None:intergenic 55.0%
! GGGTGGTACACATAGTGGAG+AGG - chr5_1:56042015-56042034 Msa0738280:intron 55.0%
ATCACCTCTGCCAGGTGTGA+AGG - chr5_1:56042738-56042757 Msa0738280:intron 55.0%
ATCACCTTCACACCTGGCAG+AGG + chr5_1:56042745-56042764 None:intergenic 55.0%
!! GCCACTGGCTTATCATCCTC+AGG + chr5_1:56043282-56043301 None:intergenic 55.0%
GGGGACATTGCGAAGCAGTA+AGG + chr5_1:56043490-56043509 None:intergenic 55.0%
CAGTAACAAGGGCTCCAGGT+AGG + chr5_1:56043944-56043963 None:intergenic 55.0%
AGTGCAGTAACAAGGGCTCC+AGG + chr5_1:56043948-56043967 None:intergenic 55.0%
!! CACGAGTCATTTCTAGCCGG+CGG - chr5_1:56044622-56044641 Msa0738280:intron 55.0%
!! TCATTTCTAGCCGGCGGCAT+TGG - chr5_1:56044628-56044647 Msa0738280:intron 55.0%
ACCCTCTTGTGATCTGGGCT+TGG - chr5_1:56044862-56044881 Msa0738280:CDS 55.0%
CCCAAGCCCAGATCACAAGA+GGG + chr5_1:56044866-56044885 None:intergenic 55.0%
CCCTCTTGTGATCTGGGCTT+GGG - chr5_1:56044863-56044882 Msa0738280:CDS 55.0%
GCCATCAACAGTATTCCCGC+TGG - chr5_1:56044903-56044922 Msa0738280:intron 55.0%
CCCGCTGGAGAAATTGATGG+AGG - chr5_1:56044918-56044937 Msa0738280:intron 55.0%
TCCAGCTTGCCAAGTCTGCT+TGG - chr5_1:56045708-56045727 Msa0738280:intron 55.0%
CCAGCTTGCCAAGTCTGCTT+GGG - chr5_1:56045709-56045728 Msa0738280:intron 55.0%
CTTGGGCTCGTGCCAAAATC+TGG - chr5_1:56045726-56045745 Msa0738280:intron 55.0%
GCTCGTGCCAAAATCTGGTC+TGG - chr5_1:56045731-56045750 Msa0738280:intron 55.0%
! CTGGTCTGGCTTCTCCTGAA+TGG - chr5_1:56045745-56045764 Msa0738280:intron 55.0%
GTGGCCACATGCATACACTC+TGG - chr5_1:56046665-56046684 Msa0738280:CDS 55.0%
AGTGGGAGAGAGGAACGACG+CGG + chr5_1:56038428-56038447 None:intergenic 60.0%
ACCTGGCAGAGGTGATCCAC+TGG + chr5_1:56042734-56042753 None:intergenic 60.0%
CTTGGAACGACAACGGCCAC+TGG + chr5_1:56043297-56043316 None:intergenic 60.0%
GACGCAGCACCAAACCACTC+AGG + chr5_1:56043444-56043463 None:intergenic 60.0%
GCAGCTGCTGGACCAATTGC+CGG - chr5_1:56044511-56044530 Msa0738280:intron 60.0%
GCCCAAGCCCAGATCACAAG+AGG + chr5_1:56044867-56044886 None:intergenic 60.0%
CTTGTGATCTGGGCTTGGGC+AGG - chr5_1:56044867-56044886 Msa0738280:CDS 60.0%
GTGATGCAGCCGCCCTAACA+AGG - chr5_1:56045227-56045246 Msa0738280:intron 60.0%
GGCAGAAGCCGAGAGCTGTT+TGG + chr5_1:56045616-56045635 None:intergenic 60.0%
CCCAAGCAGACTTGGCAAGC+TGG + chr5_1:56045712-56045731 None:intergenic 60.0%
GCCAGTGGATCACCTCTGCC+AGG - chr5_1:56042730-56042749 Msa0738280:intron 65.0%
GGCACGAGCCCAAGCAGACT+TGG + chr5_1:56045720-56045739 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 56038228 56046938 56038228 ID=Msa0738280;Name=Msa0738280
chr5_1 mRNA 56038228 56046938 56038228 ID=Msa0738280-mRNA-1;Parent=Msa0738280;Name=Msa0738280-mRNA-1;_AED=0.05;_eAED=0.05;_QI=165|0.88|1|1|1|1|10|279|491
chr5_1 exon 56038228 56038755 56038228 ID=Msa0738280-mRNA-1:exon:15866;Parent=Msa0738280-mRNA-1
chr5_1 exon 56040195 56040355 56040195 ID=Msa0738280-mRNA-1:exon:15865;Parent=Msa0738280-mRNA-1
chr5_1 exon 56040517 56040724 56040517 ID=Msa0738280-mRNA-1:exon:15864;Parent=Msa0738280-mRNA-1
chr5_1 exon 56041108 56041261 56041108 ID=Msa0738280-mRNA-1:exon:15863;Parent=Msa0738280-mRNA-1
chr5_1 exon 56041637 56041730 56041637 ID=Msa0738280-mRNA-1:exon:15862;Parent=Msa0738280-mRNA-1
chr5_1 exon 56041824 56041929 56041824 ID=Msa0738280-mRNA-1:exon:15861;Parent=Msa0738280-mRNA-1
chr5_1 exon 56042187 56042297 56042187 ID=Msa0738280-mRNA-1:exon:15860;Parent=Msa0738280-mRNA-1
chr5_1 exon 56042407 56042457 56042407 ID=Msa0738280-mRNA-1:exon:15859;Parent=Msa0738280-mRNA-1
chr5_1 exon 56044764 56044895 56044764 ID=Msa0738280-mRNA-1:exon:15858;Parent=Msa0738280-mRNA-1
chr5_1 exon 56046564 56046938 56046564 ID=Msa0738280-mRNA-1:exon:15857;Parent=Msa0738280-mRNA-1
chr5_1 five_prime_UTR 56046774 56046938 56046774 ID=Msa0738280-mRNA-1:five_prime_utr;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56046564 56046773 56046564 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56044764 56044895 56044764 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56042407 56042457 56042407 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56042187 56042297 56042187 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56041824 56041929 56041824 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56041637 56041730 56041637 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56041108 56041261 56041108 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56040517 56040724 56040517 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56040195 56040355 56040195 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 CDS 56038507 56038755 56038507 ID=Msa0738280-mRNA-1:cds;Parent=Msa0738280-mRNA-1
chr5_1 three_prime_UTR 56038228 56038506 56038228 ID=Msa0738280-mRNA-1:three_prime_utr;Parent=Msa0738280-mRNA-1
Gene Sequence

>Msa0738280

ATGAATCTCTCACTACCTTCACCTTCAACTTTCCGCGTCGTTCCTCTCTCCCACTGCACTTCTTGCTTTCAATTCAATCTTCGTTTTCATCCTTCTAATCGTTTTCGTAATTCGCGTTCGAGTTCGTTGAAGTTGAATCCTCCTACAGGAAGAAGAAGAAGAAGACGGATTGCTTGTAGTGTTAATGAGTCTGATGGTGATAAAGACGAGGAGAAAGAAGCACATAAAAATGGAGAAACACAATCTTTGGAGGATACCTCTGAGCAAAGTAACCCTCCACCTGTAGATGCAGAACAGCTAAACAAGTTTACTGATGAAAATACAAATCAAAATGATGTGCAGAATACAGATAACATAGAAGTTGCCAGTGGATCACCTCTGCCAGGTGTGAAGCCTCAACAACTGGATGATGTAATAAAAATTCCCAAGGAAAAAATCGAAATCCTTAAAAATCAAGTGTTTGGCTTTGATACTTTTTTTGTAACAAGCCAAGATCCTTACGAGGATAAATTTGGAGATGAATACAGGCTTTTCCTTCTAGTCAATCCTGAGGATGATAAGCCAGTGGCCGTTGTCGTTCCAAGAACTACTTTACAACCAGAGACAACTCCTGTACCTGAGTGGTTTGGTGCTGCGTCTTTTGGAATCGTCACAGTGTTTACCTTACTGCTTCGCAATGTCCCCAATTTGCAATCCGATTTATTATCAACTGTTGACAATCTGAATTTGTTAAAGGATGGCCTACCTGGAGCCCTTGTTACTGCACTTATTATCGGGGTACATGAACTTGGTCACTTTCTAGTTGCCCAAAACCTTGGAGTTAAGCTTGGAGTCCCGTACTTTGTTCCTAGCTGGCAGATAGGCTCTTTTGGTTCAATTACAAGGATAAGAAGCATAGTATCTAATCGTGAAGATTTGCTCAAGATTGCAGCTGCTGGACCAATTGCCGGATTTGCATTGGGTCTTGTTCTTCTGCTTCTAGGTTTTGTTATACCTCCAAGTGACGGTATTGGTGTTGTTGTTGATGCTTCTGTGTTTCACGAGTCATTTCTAGCCGGCGGCATTGCAAGATTGTTTCTTGGTAACGTTCTCAAGGAAGGAACTCCAATTTCTATCAACCCTCTTGTGATCTGGGCTTGGGCAGGACTCCTCATCAATGCCATCAACAGTATTCCCGCTGGAGAAATTGATGGAGGGAGAATTTCTTTTGCCATATGGGGAAGAAAGGCTTCAATTCGCTTCACAGGATTTTCGATTGTGTTGCTTGGACTGTCATCACTGCTTAATGATGTAGCTTTCTACTGGGTAGTTCTGATATTCTTCTTGCAAAGAGGTCCAATTTCTCCTCTATCAGATGAAATAACTGAACCTGATGACAAGTATGTTGCTCTCGGAATAACAGTTTTGCTCTTAGGCTTGTTAGTATGCTTGCCATACCCTTTCCCATTTATAGATGAAACCCTTGCAAGTTTCTAG

Protein sequence

>Msa0738280

MNLSLPSPSTFRVVPLSHCTSCFQFNLRFHPSNRFRNSRSSSLKLNPPTGRRRRRRIACSVNESDGDKDEEKEAHKNGETQSLEDTSEQSNPPPVDAEQLNKFTDENTNQNDVQNTDNIEVASGSPLPGVKPQQLDDVIKIPKEKIEILKNQVFGFDTFFVTSQDPYEDKFGDEYRLFLLVNPEDDKPVAVVVPRTTLQPETTPVPEWFGAASFGIVTVFTLLLRNVPNLQSDLLSTVDNLNLLKDGLPGALVTALIIGVHELGHFLVAQNLGVKLGVPYFVPSWQIGSFGSITRIRSIVSNREDLLKIAAAGPIAGFALGLVLLLLGFVIPPSDGIGVVVDASVFHESFLAGGIARLFLGNVLKEGTPISINPLVIWAWAGLLINAINSIPAGEIDGGRISFAIWGRKASIRFTGFSIVLLGLSSLLNDVAFYWVVLIFFLQRGPISPLSDEITEPDDKYVALGITVLLLGLLVCLPYPFPFIDETLASF*