AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0173610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173610 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa0173610 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa0173610 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa0173610 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa0173610 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa0173610 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa0173610 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa0173610 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa0173610 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa0173610 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa0173610 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa0173610 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa0173610 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa0173610 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa0173610 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa0173610 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa0173610 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa0173610 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa0173610 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa0173610 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa0173610 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa0173610 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa0173610 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa0173610 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0173610 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa0173610 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa0173610 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa0173610 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa0173610 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa0173610 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0173610 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa0173610 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa0173610 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa0173610 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa0173610 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0173610 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa0173610 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa0173610 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa0173610 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa0173610 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa0173610 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa0173610 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa0173610 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa0173610 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0173610 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0173610 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa0173610 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa0173610 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa0173610 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa0173610 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa0173610 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa0173610 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa0173610 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0173610 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0173610 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0173610 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa0173610 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa0173610 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa0173610 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa0173610 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa0173610 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa0173610 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa0173610 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0173610 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0173610 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0173610 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0173610 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa0173610 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 1_4:+58939491 Msa0173610:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 1_4:-58942385 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 1_4:+58940301 Msa0173610:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 1_4:+58940526 Msa0173610:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 1_4:+58942017 Msa0173610:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 1_4:-58940335 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 1_4:+58942453 Msa0173610:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 1_4:-58939342 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 1_4:-58940958 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 1_4:+58942210 Msa0173610:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 1_4:+58940292 Msa0173610:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 1_4:+58942246 Msa0173610:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 1_4:-58942392 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 1_4:-58940245 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 1_4:+58940020 Msa0173610:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 1_4:-58939314 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 1_4:-58940315 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 1_4:-58939410 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 1_4:+58940679 Msa0173610:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 1_4:+58942423 Msa0173610:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 1_4:+58940058 Msa0173610:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 1_4:+58942197 Msa0173610:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 1_4:+58939508 Msa0173610:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 1_4:+58940476 Msa0173610:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 1_4:+58942137 Msa0173610:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 1_4:+58940265 Msa0173610:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 1_4:-58942357 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 1_4:+58939380 Msa0173610:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 1_4:+58940527 Msa0173610:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 1_4:+58942032 Msa0173610:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 1_4:+58939466 Msa0173610:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 1_4:+58940532 Msa0173610:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 1_4:+58940470 Msa0173610:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 1_4:+58939994 Msa0173610:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 1_4:+58942293 Msa0173610:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 1_4:+58940349 Msa0173610:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 1_4:+58940910 Msa0173610:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 1_4:-58939980 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 1_4:+58942119 Msa0173610:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 1_4:+58942294 Msa0173610:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 1_4:+58940661 Msa0173610:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 1_4:-58940354 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 1_4:+58940013 Msa0173610:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 1_4:-58940510 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 1_4:+58942204 Msa0173610:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 1_4:+58941995 Msa0173610:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 1_4:+58942037 Msa0173610:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 1_4:-58940928 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 1_4:+58940277 Msa0173610:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 1_4:-58939990 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 1_4:+58942200 Msa0173610:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 1_4:-58940517 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 1_4:+58940531 Msa0173610:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 1_4:+58942064 Msa0173610:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 1_4:+58940664 Msa0173610:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 1_4:+58940904 Msa0173610:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 1_4:-58939502 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 1_4:-58942305 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 1_4:-58940953 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 1_4:-58940513 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 1_4:+58942086 Msa0173610:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 1_4:+58940281 Msa0173610:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 1_4:+58940545 Msa0173610:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 1_4:+58939973 Msa0173610:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 1_4:-58942169 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 1_4:+58942201 Msa0173610:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 1_4:+58940240 Msa0173610:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 1_4:+58940949 Msa0173610:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 1_4:-58942258 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 1_4:-58942149 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 1_4:+58940530 Msa0173610:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 1_4:+58940682 Msa0173610:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 1_4:-58942025 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 1_4:+58942048 Msa0173610:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 1_4:+58940008 Msa0173610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - chr1_4:58941142-58941161 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG - chr1_4:58941398-58941417 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG + chr1_4:58939930-58939949 Msa0173610:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG + chr1_4:58939931-58939950 Msa0173610:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG - chr1_4:58940815-58940834 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + chr1_4:58941086-58941105 Msa0173610:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG - chr1_4:58941399-58941418 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG - chr1_4:58941564-58941583 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG - chr1_4:58942395-58942414 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG + chr1_4:58939795-58939814 Msa0173610:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + chr1_4:58939898-58939917 Msa0173610:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG + chr1_4:58939932-58939951 Msa0173610:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + chr1_4:58940372-58940391 Msa0173610:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + chr1_4:58940647-58940666 Msa0173610:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + chr1_4:58940832-58940851 Msa0173610:intron 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - chr1_4:58941016-58941035 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - chr1_4:58941017-58941036 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + chr1_4:58941023-58941042 Msa0173610:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + chr1_4:58941024-58941043 Msa0173610:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - chr1_4:58941212-58941231 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - chr1_4:58941248-58941267 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG - chr1_4:58941434-58941453 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - chr1_4:58941435-58941454 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + chr1_4:58941435-58941454 Msa0173610:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + chr1_4:58941436-58941455 Msa0173610:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + chr1_4:58941605-58941624 Msa0173610:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG - chr1_4:58942388-58942407 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG + chr1_4:58942453-58942472 Msa0173610:three_prime_UTR 20.0%
!!! GACTAACAAGAAACTTTTTT+GGG - chr1_4:58939441-58939460 None:intergenic 25.0%
!!! TGACTAACAAGAAACTTTTT+TGG - chr1_4:58939442-58939461 None:intergenic 25.0%
! AAAAAGTTTCTTGTTAGTCA+TGG + chr1_4:58939442-58939461 Msa0173610:exon 25.0%
! ATAAGAATTAGATAGTAACC+TGG - chr1_4:58939529-58939548 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - chr1_4:58939574-58939593 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - chr1_4:58939575-58939594 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG + chr1_4:58939897-58939916 Msa0173610:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG - chr1_4:58940120-58940139 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG + chr1_4:58940117-58940136 Msa0173610:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + chr1_4:58940141-58940160 Msa0173610:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + chr1_4:58940154-58940173 Msa0173610:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + chr1_4:58940191-58940210 Msa0173610:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + chr1_4:58940262-58940281 Msa0173610:CDS 25.0%
! AATCAAAGATTTCATGATTC+AGG + chr1_4:58940526-58940545 Msa0173610:CDS 25.0%
! ATCAAAGATTTCATGATTCA+GGG + chr1_4:58940527-58940546 Msa0173610:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - chr1_4:58940582-58940601 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + chr1_4:58940654-58940673 Msa0173610:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + chr1_4:58940655-58940674 Msa0173610:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + chr1_4:58940789-58940808 Msa0173610:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + chr1_4:58940978-58940997 Msa0173610:CDS 25.0%
! TACTTTATGAATCAGATAAG+GGG + chr1_4:58941025-58941044 Msa0173610:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + chr1_4:58941329-58941348 Msa0173610:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG - chr1_4:58941367-58941386 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + chr1_4:58941367-58941386 Msa0173610:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - chr1_4:58941394-58941413 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + chr1_4:58941591-58941610 Msa0173610:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + chr1_4:58941645-58941664 Msa0173610:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG - chr1_4:58941688-58941707 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - chr1_4:58941689-58941708 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG + chr1_4:58941722-58941741 Msa0173610:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + chr1_4:58941756-58941775 Msa0173610:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + chr1_4:58941757-58941776 Msa0173610:intron 25.0%
! TGCAATCAAAGTCAATAAAA+AGG - chr1_4:58941809-58941828 None:intergenic 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - chr1_4:58942113-58942132 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - chr1_4:58942114-58942133 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG + chr1_4:58942293-58942312 Msa0173610:three_prime_UTR 25.0%
! ATAATTAAATGCCACTGAAA+GGG + chr1_4:58942294-58942313 Msa0173610:three_prime_UTR 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG + chr1_4:58942322-58942341 Msa0173610:three_prime_UTR 25.0%
!!! TAACAAGAAACTTTTTTGGG+TGG - chr1_4:58939438-58939457 None:intergenic 30.0%
ATGCTATAAGCTGCAAATTA+AGG - chr1_4:58939591-58939610 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG + chr1_4:58939871-58939890 Msa0173610:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + chr1_4:58940265-58940284 Msa0173610:CDS 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + chr1_4:58940409-58940428 Msa0173610:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG + chr1_4:58940461-58940480 Msa0173610:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - chr1_4:58940520-58940539 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + chr1_4:58940608-58940627 Msa0173610:intron 30.0%
ACATATACACATGATGCTAA+GGG + chr1_4:58940609-58940628 Msa0173610:intron 30.0%
CCACTTAAAAATACATTTCC+AGG - chr1_4:58941331-58941350 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + chr1_4:58941328-58941347 Msa0173610:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG - chr1_4:58941361-58941380 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG - chr1_4:58941362-58941381 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG - chr1_4:58941589-58941608 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - chr1_4:58941652-58941671 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + chr1_4:58941991-58942010 Msa0173610:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + chr1_4:58942119-58942138 Msa0173610:CDS 30.0%
TGTCAATTACAATGCAGTTA+AGG + chr1_4:58942197-58942216 Msa0173610:three_prime_UTR 30.0%
AATTACAATGCAGTTAAGGA+GGG + chr1_4:58942201-58942220 Msa0173610:three_prime_UTR 30.0%
AGTCTGCTAATGCATAATAT+AGG - chr1_4:58942360-58942379 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG + chr1_4:58942423-58942442 Msa0173610:three_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG - chr1_4:58939345-58939364 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG - chr1_4:58939413-58939432 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG - chr1_4:58939429-58939448 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + chr1_4:58939466-58939485 Msa0173610:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - chr1_4:58939993-58940012 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG + chr1_4:58940058-58940077 Msa0173610:CDS 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - chr1_4:58940248-58940267 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + chr1_4:58940301-58940320 Msa0173610:CDS 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - chr1_4:58940337-58940356 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - chr1_4:58940338-58940357 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + chr1_4:58940400-58940419 Msa0173610:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG - chr1_4:58940516-58940535 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG + chr1_4:58940530-58940549 Msa0173610:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + chr1_4:58940531-58940550 Msa0173610:CDS 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + chr1_4:58940843-58940862 Msa0173610:intron 35.0%
AATTGACTGCCGTTACTATT+AGG - chr1_4:58940961-58940980 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + chr1_4:58941425-58941444 Msa0173610:intron 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - chr1_4:58941546-58941565 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG - chr1_4:58941898-58941917 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG - chr1_4:58942028-58942047 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + chr1_4:58942032-58942051 Msa0173610:CDS 35.0%
CAATTACAATGCAGTTAAGG+AGG + chr1_4:58942200-58942219 Msa0173610:three_prime_UTR 35.0%
! ATCCTTTTAGATAACACGCG+TGG + chr1_4:58939312-58939331 Msa0173610:five_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG - chr1_4:58939317-58939336 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG + chr1_4:58939380-58939399 Msa0173610:five_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - chr1_4:58939505-58939524 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG + chr1_4:58939994-58940013 Msa0173610:CDS 40.0%
GTCATCAGGATATCATTACG+CGG + chr1_4:58940008-58940027 Msa0173610:CDS 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG - chr1_4:58940171-58940190 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG + chr1_4:58940173-58940192 Msa0173610:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + chr1_4:58940207-58940226 Msa0173610:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + chr1_4:58940292-58940311 Msa0173610:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - chr1_4:58940318-58940337 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG + chr1_4:58940470-58940489 Msa0173610:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - chr1_4:58940513-58940532 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + chr1_4:58940532-58940551 Msa0173610:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + chr1_4:58940661-58940680 Msa0173610:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + chr1_4:58940949-58940968 Msa0173610:CDS 40.0%
AGATGGGAAAATAGTCTCAC+CGG - chr1_4:58941000-58941019 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + chr1_4:58941305-58941324 Msa0173610:intron 40.0%
GGCCATATCTCATTTAACGT+GGG - chr1_4:58941310-58941329 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG - chr1_4:58941311-58941330 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG + chr1_4:58941310-58941329 Msa0173610:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG + chr1_4:58941995-58942014 Msa0173610:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + chr1_4:58942017-58942036 Msa0173610:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + chr1_4:58942037-58942056 Msa0173610:CDS 40.0%
TTGATGGAATGGATGTTGTG+AGG + chr1_4:58942048-58942067 Msa0173610:CDS 40.0%
AGGATAGATCAACCATCTAG+AGG - chr1_4:58942152-58942171 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG - chr1_4:58942172-58942191 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG + chr1_4:58942246-58942265 Msa0173610:three_prime_UTR 40.0%
AGCAATGACAATCCAAACAC+AGG - chr1_4:58942261-58942280 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG + chr1_4:58939491-58939510 Msa0173610:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + chr1_4:58939508-58939527 Msa0173610:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + chr1_4:58940240-58940259 Msa0173610:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + chr1_4:58940277-58940296 Msa0173610:CDS 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + chr1_4:58940349-58940368 Msa0173610:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + chr1_4:58940476-58940495 Msa0173610:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + chr1_4:58940679-58940698 Msa0173610:CDS 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + chr1_4:58940904-58940923 Msa0173610:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - chr1_4:58940931-58940950 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + chr1_4:58940934-58940953 Msa0173610:CDS 45.0%
ACTGCCGTTACTATTAGGAC+CGG - chr1_4:58940956-58940975 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG + chr1_4:58941042-58941061 Msa0173610:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + chr1_4:58941043-58941062 Msa0173610:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - chr1_4:58941054-58941073 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + chr1_4:58941051-58941070 Msa0173610:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG + chr1_4:58942064-58942083 Msa0173610:CDS 45.0%
GAGACAAGCAGCTACAACAA+TGG + chr1_4:58942086-58942105 Msa0173610:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + chr1_4:58942137-58942156 Msa0173610:CDS 45.0%
TACAATGCAGTTAAGGAGGG+TGG + chr1_4:58942204-58942223 Msa0173610:three_prime_UTR 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG + chr1_4:58942211-58942230 Msa0173610:three_prime_UTR 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG + chr1_4:58942212-58942231 Msa0173610:three_prime_UTR 45.0%
TTCGCTAAATGCCCTTTCAG+TGG - chr1_4:58942308-58942327 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG + chr1_4:58940013-58940032 Msa0173610:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + chr1_4:58940020-58940039 Msa0173610:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + chr1_4:58940281-58940300 Msa0173610:CDS 50.0%
GCTTACCTGTGCACAAAGCT+CGG - chr1_4:58940357-58940376 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG + chr1_4:58940664-58940683 Msa0173610:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG + chr1_4:58940682-58940701 Msa0173610:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - chr1_4:58940909-58940928 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + chr1_4:58940924-58940943 Msa0173610:CDS 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG + chr1_4:58942210-58942229 Msa0173610:three_prime_UTR 50.0%
AGCAGTACCAGAGCACACCT+TGG + chr1_4:58939973-58939992 Msa0173610:CDS 55.0%
ACTGCATCCAAGGTGTGCTC+TGG - chr1_4:58939983-58940002 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + chr1_4:58940910-58940929 Msa0173610:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG + chr1_4:58942215-58942234 Msa0173610:three_prime_UTR 55.0%
CAGGGAGGGGACTTCACAGA+AGG + chr1_4:58940545-58940564 Msa0173610:CDS 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG + chr1_4:58942219-58942238 Msa0173610:three_prime_UTR 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG + chr1_4:58942223-58942242 Msa0173610:three_prime_UTR 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG + chr1_4:58942224-58942243 Msa0173610:three_prime_UTR 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG + chr1_4:58942218-58942237 Msa0173610:three_prime_UTR 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG + chr1_4:58942222-58942241 Msa0173610:three_prime_UTR 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG + chr1_4:58942225-58942244 Msa0173610:three_prime_UTR 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG - chr1_4:58941918-58941937 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 58939302 58942485 58939302 ID=Msa0173610;Name=Msa0173610
chr1_4 mRNA 58939302 58942485 58939302 ID=Msa0173610-mRNA-1;Parent=Msa0173610;Name=Msa0173610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|7|322|251
chr1_4 exon 58939302 58939529 58939302 ID=Msa0173610-mRNA-1:exon:18346;Parent=Msa0173610-mRNA-1
chr1_4 exon 58939952 58940107 58939952 ID=Msa0173610-mRNA-1:exon:18347;Parent=Msa0173610-mRNA-1
chr1_4 exon 58940229 58940370 58940229 ID=Msa0173610-mRNA-1:exon:18348;Parent=Msa0173610-mRNA-1
chr1_4 exon 58940483 58940571 58940483 ID=Msa0173610-mRNA-1:exon:18349;Parent=Msa0173610-mRNA-1
chr1_4 exon 58940676 58940730 58940676 ID=Msa0173610-mRNA-1:exon:18350;Parent=Msa0173610-mRNA-1
chr1_4 exon 58940914 58940999 58940914 ID=Msa0173610-mRNA-1:exon:18351;Parent=Msa0173610-mRNA-1
chr1_4 exon 58942005 58942485 58942005 ID=Msa0173610-mRNA-1:exon:18352;Parent=Msa0173610-mRNA-1
chr1_4 five_prime_UTR 58939302 58939460 58939302 ID=Msa0173610-mRNA-1:five_prime_utr;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58939461 58939529 58939461 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58939952 58940107 58939952 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58940229 58940370 58940229 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58940483 58940571 58940483 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58940676 58940730 58940676 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58940914 58940999 58940914 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 CDS 58942005 58942163 58942005 ID=Msa0173610-mRNA-1:cds;Parent=Msa0173610-mRNA-1
chr1_4 three_prime_UTR 58942164 58942485 58942164 ID=Msa0173610-mRNA-1:three_prime_utr;Parent=Msa0173610-mRNA-1
Gene Sequence

>Msa0173610

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa0173610

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*