AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458330 MtrunA17_Chr3g0137751 94.688 320 10 3 1 314 2 320 0.0 617
Msa1458330 MtrunA17_Chr4g0037131 37.500 240 128 7 83 308 13 244 3.36e-41 144
Msa1458330 MtrunA17_Chr5g0405731 37.759 241 128 6 82 308 11 243 1.46e-40 142
Msa1458330 MtrunA17_Chr4g0030171 38.983 236 119 8 89 308 20 246 3.23e-37 133
Msa1458330 MtrunA17_Chr3g0124821 34.818 247 113 9 104 311 121 358 1.40e-29 116
Msa1458330 MtrunA17_Chr3g0129051 27.941 272 129 10 87 304 43 301 6.52e-22 94.0
Msa1458330 MtrunA17_Chr4g0053871 28.025 314 160 10 52 310 7 309 1.74e-21 92.8
Msa1458330 MtrunA17_Chr6g0467121 27.445 317 147 10 54 304 43 342 3.72e-21 92.8
Msa1458330 MtrunA17_Chr4g0013191 29.961 257 115 7 102 306 78 321 7.79e-21 91.3
Msa1458330 MtrunA17_Chr4g0038151 29.520 271 126 10 88 304 41 300 3.00e-20 89.4
Msa1458330 MtrunA17_Chr4g0013201 29.699 266 142 9 83 306 57 319 1.89e-19 87.4
Msa1458330 MtrunA17_Chr1g0188431 30.196 255 109 8 101 304 70 306 1.94e-19 87.0
Msa1458330 MtrunA17_Chr6g0477071 29.286 280 127 10 87 313 69 330 2.70e-19 87.0
Msa1458330 MtrunA17_Chr7g0225221 27.068 266 146 6 88 310 45 305 6.05e-19 85.9
Msa1458330 MtrunA17_Chr8g0364291 29.329 283 118 10 87 304 38 303 7.17e-19 85.5
Msa1458330 MtrunA17_Chr5g0405991 28.409 264 119 10 102 308 55 305 1.44e-18 84.7
Msa1458330 MtrunA17_Chr4g0068621 29.137 278 112 11 101 314 69 325 4.91e-18 83.2
Msa1458330 MtrunA17_Chr1g0157051 30.233 258 112 9 102 304 56 300 6.25e-18 82.8
Msa1458330 MtrunA17_Chr7g0244451 28.938 273 129 10 88 308 40 299 6.74e-18 82.8
Msa1458330 MtrunA17_Chr7g0244461 28.676 272 127 10 88 306 36 293 9.34e-18 82.0
Msa1458330 MtrunA17_Chr3g0106921 28.405 257 116 10 102 304 57 299 1.19e-17 82.0
Msa1458330 MtrunA17_Chr6g0467251 28.413 271 127 9 87 304 51 307 8.37e-17 80.1
Msa1458330 MtrunA17_Chr8g0371381 27.652 264 121 9 102 308 58 308 1.70e-16 78.6
Msa1458330 MtrunA17_Chr3g0128061 29.286 280 142 10 81 309 36 310 1.78e-16 78.6
Msa1458330 MtrunA17_Chr3g0114451 28.195 266 124 7 88 304 50 297 1.89e-16 78.6
Msa1458330 MtrunA17_Chr5g0401431 32.778 180 89 8 88 248 47 213 1.92e-16 78.6
Msa1458330 MtrunA17_Chr2g0320071 28.906 256 113 9 102 304 57 296 2.40e-16 78.2
Msa1458330 MtrunA17_Chr2g0320101 27.473 273 127 11 87 304 40 296 2.40e-16 78.2
Msa1458330 MtrunA17_Chr5g0438021 26.812 276 135 10 83 304 42 304 5.32e-16 77.4
Msa1458330 MtrunA17_Chr5g0404721 27.599 279 131 10 87 306 45 311 1.06e-15 76.6
Msa1458330 MtrunA17_Chr2g0292251 28.906 256 132 9 102 309 60 313 1.06e-15 76.6
Msa1458330 MtrunA17_Chr2g0320051 25.547 274 132 9 87 304 40 297 1.33e-15 76.3
Msa1458330 MtrunA17_Chr6g0451571 25.818 275 137 8 87 304 49 313 3.53e-15 75.1
Msa1458330 MtrunA17_Chr8g0372601 27.376 263 122 7 101 306 61 311 8.26e-15 73.9
Msa1458330 MtrunA17_Chr2g0278671 34.667 150 80 6 95 233 49 191 5.19e-14 71.6
Msa1458330 MtrunA17_Chr3g0129061 28.235 255 118 9 102 304 60 301 1.40e-13 70.1
Msa1458330 MtrunA17_Chr1g0155611 27.941 272 110 9 101 306 77 328 1.65e-13 70.1
Msa1458330 MtrunA17_Chr4g0072091 26.761 284 128 10 88 310 44 308 6.32e-13 68.6
Msa1458330 MtrunA17_Chr1g0148021 30.337 178 111 4 91 258 48 222 1.23e-12 67.4
Msa1458330 MtrunA17_Chr7g0258811 26.984 252 137 8 102 306 101 352 1.58e-12 67.4
Msa1458330 MtrunA17_Chr1g0213061 34.752 141 79 5 102 232 59 196 2.61e-12 66.6
Msa1458330 MtrunA17_Chr7g0254201 25.448 279 135 11 87 309 35 296 6.60e-12 65.5
Msa1458330 MtrunA17_Chr5g0432401 26.990 289 161 13 44 306 3 267 7.84e-12 64.7
Msa1458330 MtrunA17_Chr1g0194271 30.645 186 110 7 87 258 45 225 8.82e-12 65.1
Msa1458330 MtrunA17_Chr3g0106901 29.070 258 114 9 102 306 63 304 9.87e-12 64.7
Msa1458330 MtrunA17_Chr3g0136751 25.896 251 140 8 104 310 59 307 1.01e-11 64.7
Msa1458330 MtrunA17_Chr5g0426581 30.818 159 75 6 104 227 120 278 1.05e-11 65.1
Msa1458330 MtrunA17_Chr2g0292211 28.405 257 132 10 102 309 72 325 1.32e-11 64.7
Msa1458330 MtrunA17_Chr2g0292241 26.471 272 150 10 87 309 44 314 1.35e-11 64.7
Msa1458330 MtrunA17_Chr2g0292091 25.591 254 143 9 102 309 56 309 2.09e-11 63.9
Msa1458330 MtrunA17_Chr3g0129041 27.473 273 131 10 88 306 44 303 3.67e-11 63.2
Msa1458330 MtrunA17_Chr2g0299691 26.493 268 140 11 88 306 80 339 5.68e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458330 AT4G32320.1 65.714 280 84 4 37 314 60 329 3.21e-133 382
Msa1458330 AT3G09640.2 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa1458330 AT3G09640.1 36.653 251 126 7 83 308 4 246 3.89e-39 138
Msa1458330 AT4G35970.1 37.500 240 127 7 83 308 11 241 1.59e-38 137
Msa1458330 AT4G35000.1 37.551 245 131 7 83 313 12 248 3.44e-38 137
Msa1458330 AT1G07890.6 36.910 233 128 6 89 308 20 246 7.23e-37 132
Msa1458330 AT1G07890.2 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.8 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.4 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.7 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.1 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.3 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT1G07890.5 36.910 233 128 6 89 308 20 246 8.25e-37 132
Msa1458330 AT4G35970.2 37.727 220 114 7 83 288 11 221 8.07e-34 124
Msa1458330 AT4G08390.3 33.333 246 120 8 104 312 126 364 2.13e-29 115
Msa1458330 AT4G08390.2 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa1458330 AT4G08390.5 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa1458330 AT4G08390.1 33.333 246 120 8 104 312 127 365 2.35e-29 115
Msa1458330 AT1G77490.1 33.835 266 130 9 86 312 86 344 1.00e-28 114
Msa1458330 AT1G77490.2 33.835 266 130 9 86 312 86 344 1.12e-28 114
Msa1458330 AT4G08390.4 33.778 225 121 8 104 312 127 339 1.01e-24 102
Msa1458330 AT1G14550.1 30.909 275 120 12 88 306 42 302 2.01e-21 93.2
Msa1458330 AT1G14540.1 27.660 282 115 10 88 304 37 294 6.30e-20 89.0
Msa1458330 AT4G16270.1 31.179 263 108 9 101 304 81 329 8.79e-20 89.0
Msa1458330 AT5G47000.1 30.189 265 121 8 101 312 64 317 9.46e-20 88.6
Msa1458330 AT4G31760.1 29.688 256 124 9 104 310 63 311 5.37e-19 86.3
Msa1458330 AT5G40150.1 29.562 274 120 9 93 309 55 312 1.08e-18 85.5
Msa1458330 AT5G14130.1 29.329 283 129 8 86 310 46 315 3.77e-18 84.0
Msa1458330 AT3G28200.1 27.509 269 133 8 93 310 44 301 4.61e-18 83.6
Msa1458330 AT4G17690.1 30.153 262 120 8 101 310 57 307 5.55e-18 83.6
Msa1458330 AT4G33420.2 30.315 254 128 10 101 313 115 360 8.76e-18 83.6
Msa1458330 AT5G14130.2 29.329 283 129 8 86 310 87 356 9.04e-18 83.2
Msa1458330 AT4G33420.1 29.545 264 117 9 101 313 68 313 9.57e-18 82.8
Msa1458330 AT2G24800.1 26.459 257 132 8 104 310 65 314 2.22e-16 79.0
Msa1458330 AT3G50990.1 28.679 265 116 10 101 306 72 322 3.89e-16 78.2
Msa1458330 AT4G37520.1 29.670 273 111 9 105 313 62 317 4.36e-16 78.2
Msa1458330 AT4G37530.1 27.586 290 127 10 88 313 47 317 6.05e-16 77.8
Msa1458330 AT1G24110.1 25.949 316 153 10 61 314 15 311 6.54e-16 77.4
Msa1458330 AT5G42180.1 27.985 268 154 10 63 308 8 258 8.44e-16 77.0
Msa1458330 AT3G17070.1 26.616 263 133 10 95 304 63 318 2.70e-15 75.9
Msa1458330 AT4G37530.2 32.402 179 91 7 88 248 47 213 5.73e-15 74.3
Msa1458330 AT5G17820.1 25.243 309 150 10 54 304 7 292 1.70e-14 73.2
Msa1458330 AT5G05340.1 26.667 255 122 9 102 304 62 303 2.96e-14 72.8
Msa1458330 AT4G37520.2 29.455 275 110 10 103 313 60 314 3.78e-14 72.4
Msa1458330 AT5G06720.1 26.667 270 140 9 88 306 52 314 4.22e-14 72.4
Msa1458330 AT5G17820.2 25.243 309 150 10 54 304 60 345 5.90e-14 72.0
Msa1458330 AT2G18150.1 27.444 266 118 8 101 306 67 317 7.24e-14 71.6
Msa1458330 AT5G06730.1 25.912 274 143 10 87 306 48 315 1.12e-13 71.2
Msa1458330 AT2G22420.1 26.766 269 140 8 87 304 38 300 1.12e-13 70.9
Msa1458330 AT1G71695.1 26.199 271 136 8 87 304 59 318 1.35e-13 70.9
Msa1458330 AT3G17070.2 27.523 218 114 8 131 304 38 255 1.02e-12 67.8
Msa1458330 AT4G09010.2 32.061 131 55 5 104 200 51 181 2.08e-11 63.9
Msa1458330 AT4G09010.1 32.061 131 55 5 104 200 116 246 2.89e-11 63.9
Msa1458330 AT4G09010.3 32.061 131 55 5 104 200 163 293 5.72e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACATGACGGTTGTAATT+TGG 0.179181 tig0039526:+15714 Msa1458330:intergenic
TAACCAAAGTATTTACATTA+AGG 0.197456 tig0039526:-11315 Msa1458330:three_prime_UTR
TTCATATTATAAGGTTCTTT+TGG 0.228709 tig0039526:-12806 Msa1458330:CDS
CGCTCCGACCATGCTTCTTC+AGG 0.236229 tig0039526:-15676 Msa1458330:intron
GAGGAAACTCTTGATGCTTC+TGG 0.303467 tig0039526:-13318 Msa1458330:CDS
AACAAGATATCTATCCTAAA+AGG 0.305705 tig0039526:-15837 Msa1458330:five_prime_UTR
CTTTACCTTTGTTAGTATCC+TGG 0.313796 tig0039526:-13732 Msa1458330:intron
GAGAAGCCATGGACGCCTTC+TGG 0.322202 tig0039526:-12784 Msa1458330:intron
AACCAAAGTATTTACATTAA+GGG 0.348545 tig0039526:-11314 Msa1458330:three_prime_UTR
TTAGGATAGATATCTTGTTT+AGG 0.349280 tig0039526:+15841 Msa1458330:intergenic
ACTCTTGGAAGTAAAGGTTT+TGG 0.369606 tig0039526:-12850 Msa1458330:CDS
CGTATTGTGCAGTGCGCATC+AGG 0.370162 tig0039526:-15757 Msa1458330:CDS
CACCCTTAATGTAAATACTT+TGG 0.385557 tig0039526:+11312 Msa1458330:intergenic
AAGTGTTTATATTAATTTGT+TGG 0.386924 tig0039526:-11272 Msa1458330:three_prime_UTR
GGCTGCAGGTGTGCTTCGTT+TGG 0.388465 tig0039526:-14799 Msa1458330:CDS
GGAAGTTTCCCTTCAGGATC+AGG 0.389840 tig0039526:+13342 Msa1458330:intergenic
TCCTCGGGAAGTTTCCCTTC+AGG 0.392970 tig0039526:+13336 Msa1458330:intergenic
TATGTCAAGCTGGTGAATTC+AGG 0.406328 tig0039526:-11456 Msa1458330:CDS
TTTGAAATTGATGACAATAC+AGG 0.426747 tig0039526:-14756 Msa1458330:intron
TTTACCTTTGTTAGTATCCT+GGG 0.437764 tig0039526:-13731 Msa1458330:intron
AGTGGAATAGCTTATAAATC+AGG 0.438593 tig0039526:-11428 Msa1458330:exon
ATATTAATTTGTTGGTCTGA+TGG 0.440040 tig0039526:-11264 Msa1458330:three_prime_UTR
ACTTCGATCTTCTAATACTC+TGG 0.444660 tig0039526:-11237 Msa1458330:three_prime_UTR
AAAGGAAAAGGAAAAGGAAA+AGG 0.452628 tig0039526:-15819 Msa1458330:five_prime_UTR
TATGAATTGTCAAAAGAAGT+AGG 0.453434 tig0039526:+12823 Msa1458330:intergenic
TTTCAAAAGTTCCAGCATCA+TGG 0.457488 tig0039526:+14772 Msa1458330:intergenic
TTGTCTGGAGCTCACACTCT+TGG 0.477240 tig0039526:-12865 Msa1458330:CDS
TTGAGGATGATGAATGCTTA+AGG 0.477644 tig0039526:-12593 Msa1458330:intron
ATCCTAAAAGGAAAAGGAAA+AGG 0.478683 tig0039526:-15825 Msa1458330:five_prime_UTR
CAAGAACTAGTAGCTTTGTC+TGG 0.485206 tig0039526:-12880 Msa1458330:CDS
GCGGACGTTATTGCTGTGGC+TGG 0.487431 tig0039526:-13709 Msa1458330:CDS
ATATCTATCCTAAAAGGAAA+AGG 0.496884 tig0039526:-15831 Msa1458330:five_prime_UTR
CATGACGGTTGTAATTTGGC+GGG 0.504477 tig0039526:+15718 Msa1458330:intergenic
GGGTGCTTACGGCATGGCGT+TGG 0.513752 tig0039526:+15470 Msa1458330:intergenic
TTGAGGAAGGTATTGACAAA+GGG 0.514007 tig0039526:-14825 Msa1458330:CDS
ACATGACGGTTGTAATTTGG+CGG 0.514760 tig0039526:+15717 Msa1458330:intergenic
ATGAATTGTCAAAAGAAGTA+GGG 0.515097 tig0039526:+12824 Msa1458330:intergenic
TTCAGATCACGCACTTGTTG+AGG 0.515812 tig0039526:-12610 Msa1458330:CDS
CCGAGCGAAACTGTGATAGT+AGG 0.518423 tig0039526:+13658 Msa1458330:intergenic
GTTGTTGTAGGTGGTATGAA+TGG 0.519310 tig0039526:-14099 Msa1458330:intron
AAACAAGATGTCCCTTGAGT+TGG 0.519443 tig0039526:+11394 Msa1458330:intergenic
AGAAGCATCAAGAGTTTCCT+CGG 0.519712 tig0039526:+13320 Msa1458330:intergenic
CTGATGCGCACTGCACAATA+CGG 0.521753 tig0039526:+15758 Msa1458330:intergenic
TTGACAAAGGGAAAGGCTGC+AGG 0.522171 tig0039526:-14813 Msa1458330:CDS
GCTCACACTCTTGGAAGTAA+AGG 0.522477 tig0039526:-12856 Msa1458330:CDS
AGAAGCAAAGATATGAGTGA+GGG 0.525513 tig0039526:+15500 Msa1458330:intergenic
GAGAAGCAAAGATATGAGTG+AGG 0.527735 tig0039526:+15499 Msa1458330:intergenic
GTTGAGGAAGGTATTGACAA+AGG 0.532606 tig0039526:-14826 Msa1458330:CDS
CACAGCAATAACGTCCGCCC+AGG 0.540378 tig0039526:+13714 Msa1458330:intergenic
CAGATAGATGCTATCCATCC+AGG 0.541954 tig0039526:-13821 Msa1458330:intron
ACTTTACCAGAAGGCGTCCA+TGG 0.549342 tig0039526:+12778 Msa1458330:intergenic
CTCACCTGAAGAAGCATGGT+CGG 0.559728 tig0039526:+15672 Msa1458330:intergenic
TCAACAAGTGCGTGATCTGA+AGG 0.564701 tig0039526:+12612 Msa1458330:intergenic
CTTGAAAGACCTGAAAATGC+TGG 0.570720 tig0039526:-14060 Msa1458330:CDS
AGGTTTCAAGTAGTAGCAGT+AGG 0.580648 tig0039526:-15569 Msa1458330:CDS
GGTGGTATGTCGACTATGAT+CGG 0.580931 tig0039526:-12639 Msa1458330:CDS
TTCTAATTAAACAAGAGTTG+AGG 0.581889 tig0039526:-14842 Msa1458330:CDS
GCTGAAGCAGTTGAAGTATG+TGG 0.592512 tig0039526:-13685 Msa1458330:CDS
AGTTGAAAGTTCCAACTCAA+GGG 0.598778 tig0039526:-11405 Msa1458330:three_prime_UTR
GAAGCATCAAGAGTTTCCTC+GGG 0.599360 tig0039526:+13321 Msa1458330:intergenic
GAAGCAAAGATATGAGTGAG+GGG 0.603163 tig0039526:+15501 Msa1458330:intergenic
CCTACTATCACAGTTTCGCT+CGG 0.605954 tig0039526:-13658 Msa1458330:CDS
CTCACTCACCTGAAGAAGCA+TGG 0.606221 tig0039526:+15668 Msa1458330:intergenic
AGAGAAAACAAGGACCTGGA+TGG 0.607635 tig0039526:+13807 Msa1458330:intergenic
GAGTTGAAAGTTCCAACTCA+AGG 0.610408 tig0039526:-11406 Msa1458330:three_prime_UTR
ATTGTGCAGTGCGCATCAGG+TGG 0.617666 tig0039526:-15754 Msa1458330:CDS
GAAGGTATTGACAAAGGGAA+AGG 0.621122 tig0039526:-14820 Msa1458330:CDS
TGAGTGAGGGGAAGAAGACA+TGG 0.622960 tig0039526:+15513 Msa1458330:intergenic
AATTAAACAAGAGTTGAGGA+AGG 0.623996 tig0039526:-14838 Msa1458330:CDS
CTGGGCGGACGTTATTGCTG+TGG 0.636998 tig0039526:-13713 Msa1458330:CDS
AAGTAGTAGCAGTAGGAGAG+CGG 0.646507 tig0039526:-15562 Msa1458330:CDS
TGGTGAATTCAGGTGTGAAG+TGG 0.659621 tig0039526:-11446 Msa1458330:CDS
TTAACAGTTGACACACATGA+CGG 0.670912 tig0039526:+15703 Msa1458330:intergenic
TCCTGAAGGGAAACTTCCCG+AGG 0.679146 tig0039526:-13337 Msa1458330:CDS
GAAGCAGTTGAAGTATGTGG+AGG 0.696962 tig0039526:-13682 Msa1458330:CDS
ACCTTTGTTAGTATCCTGGG+CGG 0.708491 tig0039526:-13728 Msa1458330:intron
GGTTCAAAACAAGCACACAA+CGG 0.722533 tig0039526:-11216 Msa1458330:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCATTAAATCTATATTA+AGG - tig0039526:11621-11640 Msa1458330:intron 10.0%
!!! TTTTTTTTACTTTCTTTTAT+TGG - tig0039526:12040-12059 Msa1458330:intron 10.0%
!!! TTTTTTTACTTTCTTTTATT+GGG - tig0039526:12041-12060 Msa1458330:intron 10.0%
!! AATATGAATGAAAATATTAT+AGG + tig0039526:13675-13694 Msa1458330:intergenic 10.0%
!!! AATATTTTCATTCATATTAA+TGG - tig0039526:13677-13696 Msa1458330:CDS 10.0%
!! TAGATTTAATGAATTAATAC+AGG + tig0039526:11616-11635 Msa1458330:intergenic 15.0%
!!! TTTTTTACTTTCTTTTATTG+GGG - tig0039526:12042-12061 Msa1458330:intron 15.0%
!! TTCAGTAAAAAAAATCAAAA+CGG + tig0039526:12531-12550 Msa1458330:intergenic 15.0%
!!! GATATTTTTTTATGTTTTCT+TGG - tig0039526:12817-12836 Msa1458330:CDS 15.0%
!!! AAAGGTAAAGTAAATTTTAT+TGG + tig0039526:13309-13328 Msa1458330:intergenic 15.0%
!!! TCATAACTTTTTTTTTTAAG+AGG + tig0039526:13851-13870 Msa1458330:intergenic 15.0%
!!! TTTTGACAATTCATATTATA+AGG - tig0039526:14236-14255 Msa1458330:intron 15.0%
!!! ATTTTAAATTTCAACTAGAA+CGG + tig0039526:14834-14853 Msa1458330:intergenic 15.0%
!!! TAAGGAAAATTTTTTTTTGA+AGG + tig0039526:14899-14918 Msa1458330:intergenic 15.0%
!!! AAGTGTTTATATTAATTTGT+TGG - tig0039526:15779-15798 Msa1458330:CDS 15.0%
!! TAATGAATTAATACAGGAAT+GGG + tig0039526:11610-11629 Msa1458330:intergenic 20.0%
!! TTAATGAATTAATACAGGAA+TGG + tig0039526:11611-11630 Msa1458330:intergenic 20.0%
!! AGCTCAAATAAAACAATTTA+AGG + tig0039526:11825-11844 Msa1458330:intergenic 20.0%
!!! GTTGAATATTATTCAGTTTT+AGG - tig0039526:12466-12485 Msa1458330:intron 20.0%
!! TCTGAGCAAAAAAAATAAAT+TGG - tig0039526:12785-12804 Msa1458330:CDS 20.0%
!! TATTCAAGTAATAAACGTAA+AGG + tig0039526:13075-13094 Msa1458330:intergenic 20.0%
!! AATGAAAATATTATAGGCAA+AGG + tig0039526:13669-13688 Msa1458330:intergenic 20.0%
!! TTCATTCATATTAATGGTAT+AGG - tig0039526:13683-13702 Msa1458330:CDS 20.0%
!! TCATTCATATTAATGGTATA+GGG - tig0039526:13684-13703 Msa1458330:CDS 20.0%
!!! TTTTATAGAAAGAATATTCG+CGG + tig0039526:13902-13921 Msa1458330:intergenic 20.0%
!!! TTCATATTATAAGGTTCTTT+TGG - tig0039526:14245-14264 Msa1458330:intron 20.0%
!! AACAAGCTAATAAATATGAT+AGG + tig0039526:14330-14349 Msa1458330:intergenic 20.0%
!! AACAATTGAAAACAATACTT+TGG - tig0039526:14653-14672 Msa1458330:intron 20.0%
!! ATTAGTGATTAATTACTTCT+TGG - tig0039526:14727-14746 Msa1458330:intron 20.0%
!!! TTTTAAATTTCAACTAGAAC+GGG + tig0039526:14833-14852 Msa1458330:intergenic 20.0%
!!! AATATATAAAAGGAGTATAC+AGG - tig0039526:15024-15043 Msa1458330:intron 20.0%
!!! ATATATAAAAGGAGTATACA+GGG - tig0039526:15025-15044 Msa1458330:intron 20.0%
!! ACATAAAAAAATGAATCCTA+AGG + tig0039526:15341-15360 Msa1458330:intergenic 20.0%
!!! AACTTTATTTATTGAACAGA+TGG - tig0039526:15518-15537 Msa1458330:CDS 20.0%
!!! AATACTTTGGTTAACTTTTT+GGG + tig0039526:15729-15748 Msa1458330:intergenic 20.0%
!!! AAATACTTTGGTTAACTTTT+TGG + tig0039526:15730-15749 Msa1458330:intergenic 20.0%
!!! TAACCAAAGTATTTACATTA+AGG - tig0039526:15736-15755 Msa1458330:CDS 20.0%
!!! AACCAAAGTATTTACATTAA+GGG - tig0039526:15737-15756 Msa1458330:CDS 20.0%
!! TTAGGATAGATATCTTGTTT+AGG + tig0039526:11213-11232 Msa1248590:intergenic 25.0%
! AACAAGATATCTATCCTAAA+AGG - tig0039526:11214-11233 Msa1458330:three_prime_UTR 25.0%
! ATATCTATCCTAAAAGGAAA+AGG - tig0039526:11220-11239 Msa1458330:three_prime_UTR 25.0%
! AATTTACACTAATGATGTAG+AGG - tig0039526:11462-11481 Msa1458330:CDS 25.0%
! AATCTATATTAAGGCCTATT+TGG - tig0039526:11630-11649 Msa1458330:intron 25.0%
! TCAAATAAGTCAATCCAAAT+AGG + tig0039526:11647-11666 Msa1458330:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATCT+TGG + tig0039526:11741-11760 Msa1458330:intergenic 25.0%
! AATAAGCTGAAAATAGTTGA+TGG + tig0039526:11904-11923 Msa1458330:intergenic 25.0%
! CTTATTTCCATAAACTCTTT+AGG - tig0039526:11918-11937 Msa1458330:intron 25.0%
! AATCTATCCTAAAGAGTTTA+TGG + tig0039526:11928-11947 Msa1458330:intergenic 25.0%
!!! AAACTCTTTAGGATAGATTA+AGG - tig0039526:11929-11948 Msa1458330:intron 25.0%
! TTCTAATTAAACAAGAGTTG+AGG - tig0039526:12209-12228 Msa1458330:intron 25.0%
!! TTTGAAATTGATGACAATAC+AGG - tig0039526:12295-12314 Msa1458330:intron 25.0%
! GAAATCTGAATCTTGTATAA+AGG - tig0039526:12401-12420 Msa1458330:intron 25.0%
! AAAAAAAATCAAAACGGTAC+TGG + tig0039526:12525-12544 Msa1458330:intergenic 25.0%
! AATTTCTTGATCACCTAATT+TGG - tig0039526:12581-12600 Msa1458330:intron 25.0%
! ATCAAGAAATTCAAAAAGTC+TGG + tig0039526:13117-13136 Msa1458330:intergenic 25.0%
! CTTCATGTAGATTTAATTCA+CGG - tig0039526:13614-13633 Msa1458330:intron 25.0%
! TTCATGTAGATTTAATTCAC+GGG - tig0039526:13615-13634 Msa1458330:intron 25.0%
! CATTCATATTAATGGTATAG+GGG - tig0039526:13685-13704 Msa1458330:CDS 25.0%
! ATTCATATTAATGGTATAGG+GGG - tig0039526:13686-13705 Msa1458330:CDS 25.0%
! AACACAAATGCAAAGTAAAT+GGG + tig0039526:13810-13829 Msa1458330:intergenic 25.0%
! TAACACAAATGCAAAGTAAA+TGG + tig0039526:13811-13830 Msa1458330:intergenic 25.0%
! ATGTGCTAATATTTGTCATT+GGG - tig0039526:14069-14088 Msa1458330:CDS 25.0%
! TGTGAAAGAAAAGTTTCAAA+TGG + tig0039526:14146-14165 Msa1458330:intergenic 25.0%
! ATGAATTGTCAAAAGAAGTA+GGG + tig0039526:14230-14249 Msa1458330:intergenic 25.0%
! TATGAATTGTCAAAAGAAGT+AGG + tig0039526:14231-14250 Msa1458330:intergenic 25.0%
! TCACAAAAAATAAATGCAGT+GGG + tig0039526:14533-14552 Msa1458330:intergenic 25.0%
! TTCACAAAAAATAAATGCAG+TGG + tig0039526:14534-14553 Msa1458330:intergenic 25.0%
!! ATGTCAGTTTTCAAATAGTA+AGG - tig0039526:14852-14871 Msa1458330:CDS 25.0%
!!! TTTTTTTTTGAAGGAGGTTA+AGG + tig0039526:14890-14909 Msa1458330:intergenic 25.0%
!!! GGAAAATTTTTTTTTGAAGG+AGG + tig0039526:14896-14915 Msa1458330:intergenic 25.0%
!!! TATTTTAGAAATGTAGAGGT+GGG + tig0039526:15157-15176 Msa1458330:intergenic 25.0%
!!! ATGGTATTTTAGAAATGTAG+AGG + tig0039526:15161-15180 Msa1458330:intergenic 25.0%
! TTAGTCATTTACTACATAAG+AGG + tig0039526:15403-15422 Msa1458330:intergenic 25.0%
!! ATACTTTGGTTAACTTTTTG+GGG + tig0039526:15728-15747 Msa1458330:intergenic 25.0%
!!! ATATTAATTTGTTGGTCTGA+TGG - tig0039526:15787-15806 Msa1458330:exon 25.0%
ATCCTAAAAGGAAAAGGAAA+AGG - tig0039526:11226-11245 Msa1458330:three_prime_UTR 30.0%
! TTCCTTTTCCTTTTCCTTTT+AGG + tig0039526:11231-11250 Msa1458330:intergenic 30.0%
AAAGGAAAAGGAAAAGGAAA+AGG - tig0039526:11232-11251 Msa1458330:three_prime_UTR 30.0%
ATTAATACAGGAATGGGATT+GGG + tig0039526:11604-11623 Msa1458330:intergenic 30.0%
AATTAATACAGGAATGGGAT+TGG + tig0039526:11605-11624 Msa1458330:intergenic 30.0%
!!! CATGTCATAAGCTGTTTTTA+TGG + tig0039526:11682-11701 Msa1458330:intergenic 30.0%
ATAGCAAGTGTTTATGCTAA+TGG + tig0039526:11851-11870 Msa1458330:intergenic 30.0%
TGTGTGTATTACTATTGGAT+TGG - tig0039526:12068-12087 Msa1458330:intron 30.0%
! TTACTATTGGATTGGATTAG+AGG - tig0039526:12076-12095 Msa1458330:intron 30.0%
! TACTATTGGATTGGATTAGA+GGG - tig0039526:12077-12096 Msa1458330:intron 30.0%
! AGAAGATATTCTTTTGTACC+TGG + tig0039526:12193-12212 Msa1458330:intergenic 30.0%
AATTAAACAAGAGTTGAGGA+AGG - tig0039526:12213-12232 Msa1458330:intron 30.0%
CAAGATTCAGATTTCTTCAT+CGG + tig0039526:12396-12415 Msa1458330:intergenic 30.0%
AATAAAATACCCGTGTTGAA+AGG - tig0039526:12428-12447 Msa1458330:intron 30.0%
TAATATCAGTCCTTTCAACA+CGG + tig0039526:12441-12460 Msa1458330:intergenic 30.0%
TAGGTGATCAAGAAATTAAG+CGG + tig0039526:12578-12597 Msa1458330:intergenic 30.0%
! GAGTTTTACATAGTACAACA+GGG + tig0039526:12621-12640 Msa1458330:intergenic 30.0%
TTGTACTATGTAAAACTCCA+CGG - tig0039526:12623-12642 Msa1458330:CDS 30.0%
ATATAAAATCAGGTTTACCG+TGG + tig0039526:12643-12662 Msa1458330:intergenic 30.0%
CAACTTGGCAATATAAAATC+AGG + tig0039526:12653-12672 Msa1458330:intergenic 30.0%
CATAGACATTACATACAACT+TGG + tig0039526:12668-12687 Msa1458330:intergenic 30.0%
GTCTATGTCTATTATCAATG+TGG - tig0039526:12681-12700 Msa1458330:intron 30.0%
ATAGTTTCATCACAAGTAAC+AGG - tig0039526:12842-12861 Msa1458330:CDS 30.0%
TTGTCTGTTTATGTTGTTGT+AGG - tig0039526:12940-12959 Msa1458330:intron 30.0%
TGGTCTGAAAAAATCAGTAA+AGG - tig0039526:13011-13030 Msa1458330:intron 30.0%
ATAAACGTAAAGGAGAAGAA+GGG + tig0039526:13065-13084 Msa1458330:intergenic 30.0%
AATAAACGTAAAGGAGAAGA+AGG + tig0039526:13066-13085 Msa1458330:intergenic 30.0%
!!! CATCTTATATTTTAATCGCC+AGG - tig0039526:13146-13165 Msa1458330:intron 30.0%
! GGATTTATCACATGTTGTTT+AGG - tig0039526:13187-13206 Msa1458330:intron 30.0%
ACAAATTACCAGAGAAAACA+AGG + tig0039526:13257-13276 Msa1458330:intergenic 30.0%
TTTACCTTTGTTAGTATCCT+GGG - tig0039526:13320-13339 Msa1458330:CDS 30.0%
TGCTTGTCATATCCTATATA+CGG + tig0039526:13463-13482 Msa1458330:intergenic 30.0%
TTGTTCTTTATACAACAGCA+TGG + tig0039526:13571-13590 Msa1458330:intergenic 30.0%
!! GAAGCTGTTTCTTTCTAAAA+TGG + tig0039526:13598-13617 Msa1458330:intergenic 30.0%
CAATGACAAATATTAGCACA+TGG + tig0039526:14070-14089 Msa1458330:intergenic 30.0%
CATGTGCTAATATTTGTCAT+TGG - tig0039526:14068-14087 Msa1458330:CDS 30.0%
ATGCATGAGCAAAATTATTC+TGG + tig0039526:14117-14136 Msa1458330:intergenic 30.0%
CACAAAAAATAAATGCAGTG+GGG + tig0039526:14532-14551 Msa1458330:intergenic 30.0%
ACTAGGATCTCAATTCAAAA+AGG - tig0039526:14564-14583 Msa1458330:intron 30.0%
! GGAGGTTAAGGAAATTTTTA+TGG + tig0039526:14878-14897 Msa1458330:intergenic 30.0%
TTTCCTTAACCAAATAGTGA+TGG - tig0039526:14911-14930 Msa1458330:intron 30.0%
!! ATTTTAGAAATGTAGAGGTG+GGG + tig0039526:15156-15175 Msa1458330:intergenic 30.0%
!! GTATTTTAGAAATGTAGAGG+TGG + tig0039526:15158-15177 Msa1458330:intergenic 30.0%
! TTTACTTCTGAAAACGTGTA+TGG + tig0039526:15180-15199 Msa1458330:intergenic 30.0%
ACACATCTGAAAAAATGTTG+AGG - tig0039526:15270-15289 Msa1458330:intron 30.0%
CACATCTGAAAAAATGTTGA+GGG - tig0039526:15271-15290 Msa1458330:intron 30.0%
ACATCTGAAAAAATGTTGAG+GGG - tig0039526:15272-15291 Msa1458330:intron 30.0%
!!! GAAAGTTTTAAAATGCTCAC+AGG - tig0039526:15299-15318 Msa1458330:intron 30.0%
! ACTACATAAGAGGTTCTTTT+AGG + tig0039526:15393-15412 Msa1458330:intergenic 30.0%
AGTGGAATAGCTTATAAATC+AGG - tig0039526:15623-15642 Msa1458330:intron 30.0%
CACCCTTAATGTAAATACTT+TGG + tig0039526:15742-15761 Msa1458330:intergenic 30.0%
TTAACAGTTGACACACATGA+CGG + tig0039526:11351-11370 Msa1458330:intergenic 35.0%
AGAAGCAAAGATATGAGTGA+GGG + tig0039526:11554-11573 Msa1458330:intergenic 35.0%
CAGCTTATGACATGTTCATT+AGG - tig0039526:11688-11707 Msa1458330:intron 35.0%
! AGCGCTTCATTCTAAAGAAA+TGG - tig0039526:12000-12019 Msa1458330:intron 35.0%
GGCATTGTGTGTATTACTAT+TGG - tig0039526:12063-12082 Msa1458330:intron 35.0%
!! CTTCATAATGGGTAAAAGCA+AGG + tig0039526:12169-12188 Msa1458330:intergenic 35.0%
! TTTTACCCATTATGAAGACC+AGG - tig0039526:12172-12191 Msa1458330:intron 35.0%
! TTGTACCTGGTCTTCATAAT+GGG + tig0039526:12180-12199 Msa1458330:intergenic 35.0%
! TTTGTACCTGGTCTTCATAA+TGG + tig0039526:12181-12200 Msa1458330:intergenic 35.0%
!! TTGAGGAAGGTATTGACAAA+GGG - tig0039526:12226-12245 Msa1458330:intron 35.0%
TTTCAAAAGTTCCAGCATCA+TGG + tig0039526:12282-12301 Msa1458330:intergenic 35.0%
AATATCAGTCCTTTCAACAC+GGG + tig0039526:12440-12459 Msa1458330:intergenic 35.0%
! GGAGTTTTACATAGTACAAC+AGG + tig0039526:12622-12641 Msa1458330:intergenic 35.0%
ATGTAATTCAAGCGTTTGCT+CGG - tig0039526:12729-12748 Msa1458330:intron 35.0%
TGTATGGGTAAATTTGCACA+AGG - tig0039526:12762-12781 Msa1458330:intron 35.0%
TCTGTTTATGTTGTTGTAGG+TGG - tig0039526:12943-12962 Msa1458330:intron 35.0%
!! TTTTTCAGACCAGCATTTTC+AGG + tig0039526:13003-13022 Msa1458330:intergenic 35.0%
TAAACGTAAAGGAGAAGAAG+GGG + tig0039526:13064-13083 Msa1458330:intergenic 35.0%
CTTTACCTTTGTTAGTATCC+TGG - tig0039526:13319-13338 Msa1458330:CDS 35.0%
ACCAGACAATCATCAACTTA+CGG + tig0039526:13432-13451 Msa1458330:intergenic 35.0%
!! ACTTGTTGTTTGTCATCCTT+AGG + tig0039526:13501-13520 Msa1458330:intergenic 35.0%
CATGGACATAACTCAAAAGT+AGG + tig0039526:13553-13572 Msa1458330:intergenic 35.0%
AAGAGATGCTTCCAGAAAAA+AGG - tig0039526:13760-13779 Msa1458330:intron 35.0%
!!! CTCACGAAAAACCTTTTTTC+TGG + tig0039526:13774-13793 Msa1458330:intergenic 35.0%
CTTTGCATTTGTGTTATGCA+TGG - tig0039526:13815-13834 Msa1458330:intron 35.0%
! GTGTTATGCATGGATGATTT+TGG - tig0039526:13825-13844 Msa1458330:CDS 35.0%
AGTTATGGATGATCAGCAAT+TGG + tig0039526:13930-13949 Msa1458330:intergenic 35.0%
ACGACTCTCATGTTAAGTTA+TGG + tig0039526:13945-13964 Msa1458330:intergenic 35.0%
!!! TGTTGCTCTGGTTTTAACTT+AGG + tig0039526:14009-14028 Msa1458330:intergenic 35.0%
AGTTAAAACCAGAGCAACAA+AGG - tig0039526:14010-14029 Msa1458330:intron 35.0%
! ACTCTTGGAAGTAAAGGTTT+TGG - tig0039526:14201-14220 Msa1458330:intron 35.0%
!! TGAGTTGTTACTTTACCAGA+AGG + tig0039526:14285-14304 Msa1458330:intergenic 35.0%
CTGTATAAAAGAGAACCAGT+GGG + tig0039526:14393-14412 Msa1458330:intergenic 35.0%
TTGAGGATGATGAATGCTTA+AGG - tig0039526:14458-14477 Msa1458330:intron 35.0%
GTTCCATCACTATTTGGTTA+AGG + tig0039526:14917-14936 Msa1458330:intergenic 35.0%
!! TTTCTGGTTCCATCACTATT+TGG + tig0039526:14923-14942 Msa1458330:intergenic 35.0%
GGGTCAAACACATACAATAT+GGG - tig0039526:14953-14972 Msa1458330:intron 35.0%
GGTCAAACACATACAATATG+GGG - tig0039526:14954-14973 Msa1458330:intron 35.0%
TACAGGGAAAATTACAGAGT+TGG - tig0039526:15041-15060 Msa1458330:intron 35.0%
ACAGGGAAAATTACAGAGTT+GGG - tig0039526:15042-15061 Msa1458330:intron 35.0%
CAAAGGTGAACATTGGTATT+GGG + tig0039526:15083-15102 Msa1458330:intergenic 35.0%
AAAATGCATACCCTGGTTAA+AGG - tig0039526:15120-15139 Msa1458330:intron 35.0%
ATCCATATAAGCAAACAACG+AGG - tig0039526:15365-15384 Msa1458330:intron 35.0%
GCATGTGACAATTAATATCC+CGG - tig0039526:15435-15454 Msa1458330:intron 35.0%
CTCGTAAGTAATGCAAATTG+AGG + tig0039526:15498-15517 Msa1458330:intergenic 35.0%
AGTTGAAAGTTCCAACTCAA+GGG - tig0039526:15646-15665 Msa1458330:intron 35.0%
ACTTCGATCTTCTAATACTC+TGG - tig0039526:15814-15833 Msa1458330:five_prime_UTR 35.0%
ACATGACGGTTGTAATTTGG+CGG + tig0039526:11337-11356 Msa1458330:intergenic 40.0%
CACACATGACGGTTGTAATT+TGG + tig0039526:11340-11359 Msa1458330:intergenic 40.0%
AAAACACTACCCAGCAGATT+TGG + tig0039526:11423-11442 Msa1458330:intergenic 40.0%
! AGGTTTCAAGTAGTAGCAGT+AGG - tig0039526:11482-11501 Msa1458330:CDS 40.0%
GAAGCAAAGATATGAGTGAG+GGG + tig0039526:11553-11572 Msa1458330:intergenic 40.0%
GAGAAGCAAAGATATGAGTG+AGG + tig0039526:11555-11574 Msa1458330:intergenic 40.0%
GCTATAATTGACATGCTCGT+TGG - tig0039526:12130-12149 Msa1458330:intron 40.0%
!! GTTGAGGAAGGTATTGACAA+AGG - tig0039526:12225-12244 Msa1458330:intron 40.0%
!! GAAGGTATTGACAAAGGGAA+AGG - tig0039526:12231-12250 Msa1458330:intron 40.0%
! TACAGGTATACATCTAGCTC+AGG - tig0039526:12312-12331 Msa1458330:intron 40.0%
! ACAGGTATACATCTAGCTCA+GGG - tig0039526:12313-12332 Msa1458330:intron 40.0%
CATGTGCTTGATGCCAAATT+AGG + tig0039526:12597-12616 Msa1458330:intergenic 40.0%
CTAATTTGGCATCAAGCACA+TGG - tig0039526:12595-12614 Msa1458330:CDS 40.0%
GTTGTTGTAGGTGGTATGAA+TGG - tig0039526:12952-12971 Msa1458330:intron 40.0%
CTTGAAAGACCTGAAAATGC+TGG - tig0039526:12991-13010 Msa1458330:intron 40.0%
!! ACCGTAAGTTGATGATTGTC+TGG - tig0039526:13428-13447 Msa1458330:intron 40.0%
TGGTACTCTAGTCCGTATAT+AGG - tig0039526:13448-13467 Msa1458330:intron 40.0%
ATCCTTAGGAGAAAAGATCG+CGG + tig0039526:13487-13506 Msa1458330:intergenic 40.0%
!! AGAAGCATCAAGAGTTTCCT+CGG + tig0039526:13734-13753 Msa1458330:intergenic 40.0%
TAAAACCAGAGCAACAAAGG+AGG - tig0039526:14013-14032 Msa1458330:intron 40.0%
! ATTTTCCTCCTTTGTTGCTC+TGG + tig0039526:14021-14040 Msa1458330:intergenic 40.0%
!! CAAGAACTAGTAGCTTTGTC+TGG - tig0039526:14171-14190 Msa1458330:intron 40.0%
!!! TTTTTTTCACTCTCACCCAC+TGG - tig0039526:14375-14394 Msa1458330:intron 40.0%
CCTGTATAAAAGAGAACCAG+TGG + tig0039526:14394-14413 Msa1458330:intergenic 40.0%
!!! CCACTGGTTCTCTTTTATAC+AGG - tig0039526:14391-14410 Msa1458330:intron 40.0%
!! CTGGTTCTCTTTTATACAGG+TGG - tig0039526:14394-14413 Msa1458330:intron 40.0%
GTTAGTAAGTTCCTTGTGTC+TGG - tig0039526:14761-14780 Msa1458330:CDS 40.0%
AAACAGATACTCCAGACACA+AGG + tig0039526:14775-14794 Msa1458330:intergenic 40.0%
GGGGTCAAACACATACAATA+TGG - tig0039526:14952-14971 Msa1458330:intron 40.0%
! GTGAACATTGGTATTGGGTA+TGG + tig0039526:15078-15097 Msa1458330:intergenic 40.0%
GCAAAGGTGAACATTGGTAT+TGG + tig0039526:15084-15103 Msa1458330:intergenic 40.0%
GCAAATGCAAAGGTGAACAT+TGG + tig0039526:15090-15109 Msa1458330:intergenic 40.0%
CAAGGGAAATGCAAATGCAA+AGG + tig0039526:15100-15119 Msa1458330:intergenic 40.0%
! ACCAGGGTATGCATTTTCAA+GGG + tig0039526:15117-15136 Msa1458330:intergenic 40.0%
! AACCAGGGTATGCATTTTCA+AGG + tig0039526:15118-15137 Msa1458330:intergenic 40.0%
AAATTTGCCGCCTTTAACCA+GGG + tig0039526:15133-15152 Msa1458330:intergenic 40.0%
! TCTAGATGCCATAGTTTGTC+TGG - tig0039526:15202-15221 Msa1458330:intron 40.0%
TGAAAAAATGTTGAGGGGCA+TGG - tig0039526:15277-15296 Msa1458330:intron 40.0%
AAATGCTCACAGGTGTTTGT+TGG - tig0039526:15309-15328 Msa1458330:intron 40.0%
AATGCTCACAGGTGTTTGTT+GGG - tig0039526:15310-15329 Msa1458330:intron 40.0%
CACCTCGTTGTTTGCTTATA+TGG + tig0039526:15370-15389 Msa1458330:intergenic 40.0%
ACAATTAATATCCCGGTGCA+CGG - tig0039526:15442-15461 Msa1458330:intron 40.0%
CAAAAACGTGTATGTCAAGC+TGG - tig0039526:15585-15604 Msa1458330:intron 40.0%
TATGTCAAGCTGGTGAATTC+AGG - tig0039526:15595-15614 Msa1458330:intron 40.0%
GAGTTGAAAGTTCCAACTCA+AGG - tig0039526:15645-15664 Msa1458330:intron 40.0%
AAACAAGATGTCCCTTGAGT+TGG + tig0039526:15660-15679 Msa1458330:intergenic 40.0%
GGTTCAAAACAAGCACACAA+CGG - tig0039526:15835-15854 Msa1458330:five_prime_UTR 40.0%
CATGACGGTTGTAATTTGGC+GGG + tig0039526:11336-11355 Msa1458330:intergenic 45.0%
CTTGTACCTCCAAATCTGCT+GGG - tig0039526:11411-11430 Msa1458330:three_prime_UTR 45.0%
AAGTAGTAGCAGTAGGAGAG+CGG - tig0039526:11489-11508 Msa1458330:CDS 45.0%
!!! CGTTTGGTTTTCCATGATGC+TGG - tig0039526:12268-12287 Msa1458330:intron 45.0%
! CAGGTATACATCTAGCTCAG+GGG - tig0039526:12314-12333 Msa1458330:intron 45.0%
! TCTTCATCGGTTGACTTTGC+TGG + tig0039526:12383-12402 Msa1458330:intergenic 45.0%
!! AAAACGGTACTGGCAGTATG+TGG + tig0039526:12515-12534 Msa1458330:intergenic 45.0%
CTCGGCAATTGCATCTGTAT+GGG - tig0039526:12747-12766 Msa1458330:intron 45.0%
CAGATAGATGCTATCCATCC+AGG - tig0039526:13230-13249 Msa1458330:intron 45.0%
AGAGAAAACAAGGACCTGGA+TGG + tig0039526:13247-13266 Msa1458330:intergenic 45.0%
!!! ATCCAGGTCCTTGTTTTCTC+TGG - tig0039526:13246-13265 Msa1458330:intron 45.0%
TACCAGAGAAAACAAGGACC+TGG + tig0039526:13251-13270 Msa1458330:intergenic 45.0%
ACCTTTGTTAGTATCCTGGG+CGG - tig0039526:13323-13342 Msa1458330:CDS 45.0%
GCTGAAGCAGTTGAAGTATG+TGG - tig0039526:13366-13385 Msa1458330:intron 45.0%
GAAGCAGTTGAAGTATGTGG+AGG - tig0039526:13369-13388 Msa1458330:intron 45.0%
CCTACTATCACAGTTTCGCT+CGG - tig0039526:13393-13412 Msa1458330:intron 45.0%
! AACCGCGATCTTTTCTCCTA+AGG - tig0039526:13482-13501 Msa1458330:intron 45.0%
! GAAGCATCAAGAGTTTCCTC+GGG + tig0039526:13733-13752 Msa1458330:intergenic 45.0%
GAGGAAACTCTTGATGCTTC+TGG - tig0039526:13733-13752 Msa1458330:intron 45.0%
GCTCACACTCTTGGAAGTAA+AGG - tig0039526:14195-14214 Msa1458330:intron 45.0%
!! AGGTTCTTTTGGAGAAGCCA+TGG - tig0039526:14256-14275 Msa1458330:intron 45.0%
! GGTGGTATGTCGACTATGAT+CGG - tig0039526:14412-14431 Msa1458330:intron 45.0%
TCAACAAGTGCGTGATCTGA+AGG + tig0039526:14442-14461 Msa1458330:intergenic 45.0%
! TTCAGATCACGCACTTGTTG+AGG - tig0039526:14441-14460 Msa1458330:intron 45.0%
TTGTGAAGCAGTCAAGCACT+AGG - tig0039526:14547-14566 Msa1458330:intron 45.0%
TCCCTTGAAAATGCATACCC+TGG - tig0039526:15113-15132 Msa1458330:intron 45.0%
ATGCATACCCTGGTTAAAGG+CGG - tig0039526:15123-15142 Msa1458330:intron 45.0%
GAAATTTGCCGCCTTTAACC+AGG + tig0039526:15134-15153 Msa1458330:intergenic 45.0%
GCACACTTCCAGACAAACTA+TGG + tig0039526:15213-15232 Msa1458330:intergenic 45.0%
! TGTTTGTTGGGCTTAGCCTT+AGG - tig0039526:15322-15341 Msa1458330:intron 45.0%
TGGTGAATTCAGGTGTGAAG+TGG - tig0039526:15605-15624 Msa1458330:intron 45.0%
!! TTAATCTAAATATTATTTAA+AGG + tig0039526:14593-14612 Msa1458330:intergenic 5.0%
!! TTATTAAGTAAATATATAAA+AGG - tig0039526:15014-15033 Msa1458330:intron 5.0%
CTGATGCGCACTGCACAATA+CGG + tig0039526:11296-11315 Msa1458330:intergenic 50.0%
! CTCACCTGAAGAAGCATGGT+CGG + tig0039526:11382-11401 Msa1458330:intergenic 50.0%
CTCACTCACCTGAAGAAGCA+TGG + tig0039526:11386-11405 Msa1458330:intergenic 50.0%
CATGCTTCTTCAGGTGAGTG+AGG - tig0039526:11384-11403 Msa1458330:three_prime_UTR 50.0%
! CCAGCAGATTTGGAGGTACA+AGG + tig0039526:11413-11432 Msa1458330:intergenic 50.0%
CCTTGTACCTCCAAATCTGC+TGG - tig0039526:11410-11429 Msa1458330:three_prime_UTR 50.0%
ACACTACCCAGCAGATTTGG+AGG + tig0039526:11420-11439 Msa1458330:intergenic 50.0%
TGAGTGAGGGGAAGAAGACA+TGG + tig0039526:11541-11560 Msa1458330:intergenic 50.0%
GGAATGGGATTGGGTGCTTA+CGG + tig0039526:11595-11614 Msa1458330:intergenic 50.0%
! GGATTGGATTAGAGGGAGTG+AGG - tig0039526:12084-12103 Msa1458330:intron 50.0%
! TTGGATTAGAGGGAGTGAGG+AGG - tig0039526:12087-12106 Msa1458330:intron 50.0%
TTGACAAAGGGAAAGGCTGC+AGG - tig0039526:12238-12257 Msa1458330:intron 50.0%
GCTCGGCAATTGCATCTGTA+TGG - tig0039526:12746-12765 Msa1458330:intron 50.0%
TCCGCCCAGGATACTAACAA+AGG + tig0039526:13327-13346 Msa1458330:intergenic 50.0%
CCGAGCGAAACTGTGATAGT+AGG + tig0039526:13396-13415 Msa1458330:intergenic 50.0%
GGAAGTTTCCCTTCAGGATC+AGG + tig0039526:13712-13731 Msa1458330:intergenic 50.0%
! TTGTCTGGAGCTCACACTCT+TGG - tig0039526:14186-14205 Msa1458330:intron 50.0%
!! ACTTTACCAGAAGGCGTCCA+TGG + tig0039526:14276-14295 Msa1458330:intergenic 50.0%
TGGAACCAGAAACTTGCGTC+AGG - tig0039526:14931-14950 Msa1458330:intron 50.0%
GGAACCAGAAACTTGCGTCA+GGG - tig0039526:14932-14951 Msa1458330:intron 50.0%
GAACCAGAAACTTGCGTCAG+GGG - tig0039526:14933-14952 Msa1458330:intron 50.0%
!! AGTGTGCTTTGAGACGACAC+AGG - tig0039526:15226-15245 Msa1458330:intron 50.0%
CGTATTGTGCAGTGCGCATC+AGG - tig0039526:11294-11313 Msa1458330:three_prime_UTR 55.0%
ATTGTGCAGTGCGCATCAGG+TGG - tig0039526:11297-11316 Msa1458330:three_prime_UTR 55.0%
ACTGAGACGTTAGCTGAGCC+TGG + tig0039526:13167-13186 Msa1458330:intergenic 55.0%
AGGCTCAGCTAACGTCTCAG+TGG - tig0039526:13166-13185 Msa1458330:intron 55.0%
TATAGGGGGCCTGATCCTGA+AGG - tig0039526:13700-13719 Msa1458330:CDS 55.0%
ATAGGGGGCCTGATCCTGAA+GGG - tig0039526:13701-13720 Msa1458330:CDS 55.0%
TCCTGAAGGGAAACTTCCCG+AGG - tig0039526:13714-13733 Msa1458330:CDS 55.0%
TCCTCGGGAAGTTTCCCTTC+AGG + tig0039526:13718-13737 Msa1458330:intergenic 55.0%
TGACCCCTGACGCAAGTTTC+TGG + tig0039526:14939-14958 Msa1458330:intergenic 55.0%
TGCATACACATGCCGTGCAC+CGG + tig0039526:15457-15476 Msa1458330:intergenic 55.0%
CGCTCCGACCATGCTTCTTC+AGG - tig0039526:11375-11394 Msa1458330:three_prime_UTR 60.0%
GGGATTGGGTGCTTACGGCA+TGG + tig0039526:11590-11609 Msa1458330:intergenic 60.0%
GGCTGCAGGTGTGCTTCGTT+TGG - tig0039526:12252-12271 Msa1458330:intron 60.0%
CACAGCAATAACGTCCGCCC+AGG + tig0039526:13340-13359 Msa1458330:intergenic 60.0%
CTGGGCGGACGTTATTGCTG+TGG - tig0039526:13338-13357 Msa1458330:CDS 60.0%
GCGGACGTTATTGCTGTGGC+TGG - tig0039526:13342-13361 Msa1458330:CDS 60.0%
GAGAAGCCATGGACGCCTTC+TGG - tig0039526:14267-14286 Msa1458330:intron 60.0%
GCATACACATGCCGTGCACC+GGG + tig0039526:15456-15475 Msa1458330:intergenic 60.0%
GGGTGCTTACGGCATGGCGT+TGG + tig0039526:11584-11603 Msa1458330:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0039526 gene 11210 15863 11210 ID=Msa1458330;Name=Msa1458330
tig0039526 mRNA 11210 15863 11210 ID=Msa1458330-mRNA-1;Parent=Msa1458330;Name=Msa1458330-mRNA-1;_AED=0.28;_eAED=0.28;_QI=63|0.88|0.9|1|1|1|10|224|314
tig0039526 exon 11210 11536 11210 ID=Msa1458330-mRNA-1:exon:21705;Parent=Msa1458330-mRNA-1
tig0039526 exon 12594 12660 12594 ID=Msa1458330-mRNA-1:exon:21704;Parent=Msa1458330-mRNA-1
tig0039526 exon 12785 12906 12785 ID=Msa1458330-mRNA-1:exon:21703;Parent=Msa1458330-mRNA-1
tig0039526 exon 13285 13368 13285 ID=Msa1458330-mRNA-1:exon:21702;Parent=Msa1458330-mRNA-1
tig0039526 exon 13643 13739 13643 ID=Msa1458330-mRNA-1:exon:21701;Parent=Msa1458330-mRNA-1
tig0039526 exon 13822 13864 13822 ID=Msa1458330-mRNA-1:exon:21700;Parent=Msa1458330-mRNA-1
tig0039526 exon 14047 14111 14047 ID=Msa1458330-mRNA-1:exon:21699;Parent=Msa1458330-mRNA-1
tig0039526 exon 14757 14884 14757 ID=Msa1458330-mRNA-1:exon:21698;Parent=Msa1458330-mRNA-1
tig0039526 exon 15480 15591 15480 ID=Msa1458330-mRNA-1:exon:21697;Parent=Msa1458330-mRNA-1
tig0039526 exon 15677 15863 15677 ID=Msa1458330-mRNA-1:exon:21696;Parent=Msa1458330-mRNA-1
tig0039526 five_prime_UTR 15801 15863 15801 ID=Msa1458330-mRNA-1:five_prime_utr;Parent=Msa1458330-mRNA-1
tig0039526 CDS 15677 15800 15677 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 15480 15591 15480 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 14757 14884 14757 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 14047 14111 14047 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 13822 13864 13822 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 13643 13739 13643 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 13285 13368 13285 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 12785 12906 12785 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 12594 12660 12594 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 CDS 11434 11536 11434 ID=Msa1458330-mRNA-1:cds;Parent=Msa1458330-mRNA-1
tig0039526 three_prime_UTR 11210 11433 11210 ID=Msa1458330-mRNA-1:three_prime_utr;Parent=Msa1458330-mRNA-1
Gene Sequence

>Msa1458330

ATGTGTTCAAGAGTGAGTAACCGTATTGTGCAGTGCGCATCAGGTGGCGAAAGCAGTTATCCCGCCAAATTACAACCGTCATGTGTGTCAACTGTTAAGTTTCGCTCCGACCATGCTTCTTCAGAGGTTTCAAGTAGTAGCAGTAGGAGAGCGGTAATATTCAGCAGCATAGCTACGTTGCCATGTCTTCTTCCCCTCACTCATATCTTTGCTTCTCTTCAAGCCAACGCCATGCCACCAGGTACAAAAGAATATCTTCTAATTAAACAAGAGTTGAGGAAGGTATTGACAAAGGGAAAGGCTGCAGGTGTGCTTCGTTTGGTTTTCCATGATGCTGGAACTTTTGAAATTGATGACAATACAGGTGGTATGAATGGCTCTGTAGTCTATGAACTTGAAAGACCTGAAAATGCTGGTCTGAAAAAATCAGTTCTACAAAAAGCAAAGACTCAGATAGATGCTATCCATCCAGTATCCTGGGCGGACGTTATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCTACTATCACAGTTTCGCTCGGCAGACAAGACTCACCGGGGCCTGATCCTGAAGGGAAACTTCCCGAGGAAACTCTTGATGCTTCTGGTTTGAAGAGATGCTTCCAGAAAAAAGGTTTTTCAACACAAGAACTAGTAGCTTTGTCTGGAGCTCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCTACTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCATGGACGCCTTCTGGTGGTATGTCGACTATGATCGGTCTTCCTTCAGATCACGCACTTGTTGAGGATGATGAATGCTTAAGATGGATTAAAAAATACGCAGAGAATGAGAATATGTTCTTTGAAGACTTCAAAAACGTGTATGTCAAGCTGGTGAATTCAGGTGTGAAGTGGAATAGCTTATAA

Protein sequence

>Msa1458330

MCSRVSNRIVQCASGGESSYPAKLQPSCVSTVKFRSDHASSEVSSSSSRRAVIFSSIATLPCLLPLTHIFASLQANAMPPGTKEYLLIKQELRKVLTKGKAAGVLRLVFHDAGTFEIDDNTGGMNGSVVYELERPENAGLKKSVLQKAKTQIDAIHPVSWADVIAVAGAEAVEVCGGPTITVSLGRQDSPGPDPEGKLPEETLDASGLKRCFQKKGFSTQELVALSGAHTLGSKGFGSPTSFDNSYYKVLLEKPWTPSGGMSTMIGLPSDHALVEDDECLRWIKKYAENENMFFEDFKNVYVKLVNSGVKWNSL*