AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333900 MtrunA17_Chr2g0318371 92.531 241 16 1 1 241 1 239 2.08e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333900 AT4G27390.1 67.143 140 44 2 104 241 96 235 3.66e-65 202

Find 77 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAGCACTGCTAGGATTT+TGG 0.190883 2_4:+51970023 Msa0333900:CDS
AGTAAACTTTGGGTCTAAAT+TGG 0.212593 2_4:-51969815 None:intergenic
GGAAATCTTGCTCTGGCTGC+TGG 0.232538 2_4:+51970045 Msa0333900:CDS
GACATGGGGAATATTGTATA+TGG 0.240633 2_4:-51969709 None:intergenic
GTAAAGAATAATAAAGGATT+TGG 0.246820 2_4:+51969967 Msa0333900:CDS
AACCACAGCTTACCAGAAAA+AGG 0.260992 2_4:-51971479 None:intergenic
TGGCAAGTGTTCGTTGGATT+TGG 0.278594 2_4:+51969508 Msa0333900:five_prime_UTR
TGAAAATCATTTCCACAGTT+TGG 0.296271 2_4:-51971295 None:intergenic
ATACCACACCTTTATTATCT+TGG 0.307638 2_4:+51972866 Msa0333900:three_prime_UTR
TTGATGCTATTGTTTCCATT+TGG 0.312053 2_4:+51970109 Msa0333900:CDS
TGTCTTGTATATGTTATCAT+TGG 0.317658 2_4:-51969773 None:intergenic
AAAGGATTTGGATTCAATAA+TGG 0.318678 2_4:+51969979 Msa0333900:CDS
TCAAACCAATCTACAACATT+TGG 0.326629 2_4:+51971645 Msa0333900:CDS
TGATGCTATTGTTTCCATTT+GGG 0.332028 2_4:+51970110 Msa0333900:CDS
TGGGTGTATGTGGGAAGAAA+AGG 0.347214 2_4:+51969915 Msa0333900:CDS
TTTATGGCAGACAAGGATTC+TGG 0.347799 2_4:+51971813 Msa0333900:intron
AGAAGATTGAAGATACGTTT+TGG 0.349225 2_4:-51972893 None:intergenic
TAGGTCTTGGTGCTTTCCTC+TGG 0.355550 2_4:+51971107 Msa0333900:CDS
GTAAAATCTTAGTGTACTAA+TGG 0.358748 2_4:-51969681 None:intergenic
TTCAATAATGGTGGAGGTGG+TGG 0.377303 2_4:+51969991 Msa0333900:CDS
AAATTCTCGTTCAGTTAAAC+AGG 0.393778 2_4:+51972679 Msa0333900:three_prime_UTR
CTGCAATTCTTCATTTAAAG+TGG 0.395830 2_4:-51971435 None:intergenic
CTCTCAATGACTGGACAACT+TGG 0.412515 2_4:+51970078 Msa0333900:CDS
GGTGCTTTCCTCTGGTGGGC+AGG 0.422821 2_4:+51971115 Msa0333900:CDS
AGATGAAAAGAAGTAAACTT+TGG 0.428569 2_4:-51969826 None:intergenic
GTCTTGGTGCTTTCCTCTGG+TGG 0.432604 2_4:+51971110 Msa0333900:CDS
GATGAAAAGAAGTAAACTTT+GGG 0.436479 2_4:-51969825 None:intergenic
GGGTGTATGTGGGAAGAAAA+GGG 0.437123 2_4:+51969916 Msa0333900:CDS
TGTACTAATGGAGTTAGAAA+AGG 0.438306 2_4:-51969669 None:intergenic
GAAATCTTGCTCTGGCTGCT+GGG 0.441542 2_4:+51970046 Msa0333900:CDS
TTGGTAAACCAAGATAATAA+AGG 0.441920 2_4:-51972874 None:intergenic
GTCTTGTATATGTTATCATT+GGG 0.442530 2_4:-51969772 None:intergenic
CAATGACTGGACAACTTGGC+TGG 0.453870 2_4:+51970082 Msa0333900:CDS
CTTGTCCAAATGTTGTAGAT+TGG 0.454288 2_4:-51971650 None:intergenic
TATTCCCACACAGATCTTTG+CGG 0.454686 2_4:+51971069 Msa0333900:intron
GGGAAGAAAAGGGGTGCAAG+AGG 0.465614 2_4:+51969926 Msa0333900:CDS
TGTGTCAAATATCATCTTTG+AGG 0.485147 2_4:-51969590 None:intergenic
ACATGGGGAATATTGTATAT+GGG 0.494818 2_4:-51969708 None:intergenic
TCTTGGTGCTTTCCTCTGGT+GGG 0.507937 2_4:+51971111 Msa0333900:CDS
GGAGGTGGTGGAAGAGATGA+TGG 0.511206 2_4:+51970003 Msa0333900:CDS
GAATTGTACAAGAGTGGACA+TGG 0.518570 2_4:-51969725 None:intergenic
AGTTGAGAGCATGCAGGGAG+AGG 0.519424 2_4:+51969860 Msa0333900:CDS
GGAAGAAAAGGGGTGCAAGA+GGG 0.529776 2_4:+51969927 Msa0333900:CDS
TTAGTACCGATAGTAGGTCT+TGG 0.531029 2_4:+51971094 Msa0333900:CDS
TCGTTCAGTTAAACAGGCCG+TGG 0.531598 2_4:+51972685 Msa0333900:three_prime_UTR
TTGACTTATCTCTCAATGAC+TGG 0.532435 2_4:+51970069 Msa0333900:CDS
GTGCAAGAGGGAAAAGAGAG+TGG 0.534510 2_4:+51969939 Msa0333900:CDS
GGATTTGGATTCAATAATGG+TGG 0.539358 2_4:+51969982 Msa0333900:CDS
GTTTCAAGTTGAGAGCATGC+AGG 0.540331 2_4:+51969854 Msa0333900:CDS
TAAATTGGAGAAAGAAAAGG+TGG 0.540736 2_4:-51969800 None:intergenic
CCAACGAACACTTGCCACGT+TGG 0.541691 2_4:-51969502 None:intergenic
GGATTCAATAATGGTGGAGG+TGG 0.547149 2_4:+51969988 Msa0333900:CDS
CCAACGTGGCAAGTGTTCGT+TGG 0.553138 2_4:+51969502 Msa0333900:five_prime_UTR
TAATGTATTCTAGAGAGGAT+AGG 0.561442 2_4:+51972778 Msa0333900:three_prime_UTR
TTTGGATTCAATAATGGTGG+AGG 0.562087 2_4:+51969985 Msa0333900:CDS
GTCTAAATTGGAGAAAGAAA+AGG 0.563509 2_4:-51969803 None:intergenic
ACTCGTTGCGTCTTAAGCAC+CGG 0.567742 2_4:-51972718 None:intergenic
GATAGAGAATTGTACAAGAG+TGG 0.568164 2_4:-51969731 None:intergenic
GCGGTGTTAGTACCGATAGT+AGG 0.572577 2_4:+51971088 Msa0333900:CDS
GGTTTAGACATGTCGTCGAA+TGG 0.578641 2_4:-51969648 None:intergenic
TTGGAAAGAACAACATGTGA+AGG 0.580650 2_4:+51969527 Msa0333900:five_prime_UTR
TTTCAAGTTGAGAGCATGCA+GGG 0.582105 2_4:+51969855 Msa0333900:CDS
GAGATGATGGTAGCACTGCT+AGG 0.582418 2_4:+51970016 Msa0333900:CDS
CAGATTAATGTATTCTAGAG+AGG 0.585509 2_4:+51972773 Msa0333900:three_prime_UTR
GGTGTATGTGGGAAGAAAAG+GGG 0.588360 2_4:+51969917 Msa0333900:CDS
TGATGGTAATGAGTTTGTCA+AGG 0.603814 2_4:+51971608 Msa0333900:CDS
GCACCGGAAAATGCAAGCCA+CGG 0.623612 2_4:-51972702 None:intergenic
TATATGCAGTGTCCAAACTG+TGG 0.630144 2_4:+51971283 Msa0333900:intron
AAACCAAGATAATAAAGGTG+TGG 0.634068 2_4:-51972869 None:intergenic
GCAGGTCGAGATATAATGAA+AGG 0.637002 2_4:+51971133 Msa0333900:CDS
TATCTCGACCTGCCCACCAG+AGG 0.654751 2_4:-51971123 None:intergenic
GCTAATTATACTTACTAACA+TGG 0.656358 2_4:-51971897 None:intergenic
AATTGTACAAGAGTGGACAT+GGG 0.658045 2_4:-51969724 None:intergenic
ATTGTACAAGAGTGGACATG+GGG 0.667546 2_4:-51969723 None:intergenic
AAAGCACCAAGACCTACTAT+CGG 0.670888 2_4:-51971100 None:intergenic
AAATTGGAGAAAGAAAAGGT+GGG 0.722634 2_4:-51969799 None:intergenic
AAGGGTCCTTAAAACCAACG+TGG 0.803231 2_4:+51969488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTAAATTTATTTTAAT+GGG - chr2_4:51970309-51970328 None:intergenic 10.0%
!!! TATCGTTAAATTTATTTTAA+TGG - chr2_4:51970310-51970329 None:intergenic 10.0%
!! TATATAAATTCTACATTATT+AGG + chr2_4:51970852-51970871 Msa0333900:intron 10.0%
!!! GTTTTAGTAAAGAATAATAA+AGG + chr2_4:51969961-51969980 Msa0333900:CDS 15.0%
!!! TCGTTAAATTTATTTTAATG+GGG - chr2_4:51970308-51970327 None:intergenic 15.0%
!! AAAAATTATTTACATTGAAC+AGG - chr2_4:51970936-51970955 None:intergenic 15.0%
!! AATAAAGAATAAAGAGATAA+GGG - chr2_4:51971752-51971771 None:intergenic 15.0%
!! TAATAAAGAATAAAGAGATA+AGG - chr2_4:51971753-51971772 None:intergenic 15.0%
!!! AGATTTGTATTTAATTTTTC+AGG + chr2_4:51972640-51972659 Msa0333900:intron 15.0%
!!! GATTTGTATTTAATTTTTCA+GGG + chr2_4:51972641-51972660 Msa0333900:intron 15.0%
!! GTAAAGAATAATAAAGGATT+TGG + chr2_4:51969967-51969986 Msa0333900:CDS 20.0%
!! GTTAAACCATTATAAATACA+AGG + chr2_4:51970203-51970222 Msa0333900:intron 20.0%
!!! TCTTTAAAGTGAATAAGTAA+AGG - chr2_4:51970339-51970358 None:intergenic 20.0%
!!! TTTCTTAAATTATGTTTTCC+CGG + chr2_4:51970367-51970386 Msa0333900:intron 20.0%
!!! GAATTTACATGTATAAGTTT+TGG - chr2_4:51971018-51971037 None:intergenic 20.0%
!! TTATACGTATAAAATAACGA+TGG - chr2_4:51971400-51971419 None:intergenic 20.0%
!!! TTTTTTAAACGAAATACTGA+TGG - chr2_4:51971532-51971551 None:intergenic 20.0%
!!! TTTATTTTGATATCAGTTGA+TGG + chr2_4:51971591-51971610 Msa0333900:intron 20.0%
!!! AATATATTTGCTGAATACTA+AGG - chr2_4:51972559-51972578 None:intergenic 20.0%
!! ATCTCAATAAAACTATTTAG+TGG - chr2_4:51972624-51972643 None:intergenic 20.0%
!! TTACAAAAAACAATACTTGT+GGG + chr2_4:51972923-51972942 Msa0333900:three_prime_UTR 20.0%
! GTAAAATCTTAGTGTACTAA+TGG - chr2_4:51969684-51969703 None:intergenic 25.0%
! GTCTTGTATATGTTATCATT+GGG - chr2_4:51969775-51969794 None:intergenic 25.0%
! TGTCTTGTATATGTTATCAT+TGG - chr2_4:51969776-51969795 None:intergenic 25.0%
! GATGAAAAGAAGTAAACTTT+GGG - chr2_4:51969828-51969847 None:intergenic 25.0%
! AGATGAAAAGAAGTAAACTT+TGG - chr2_4:51969829-51969848 None:intergenic 25.0%
!! AAAGTTTACTTCTTTTCATC+TGG + chr2_4:51969828-51969847 Msa0333900:CDS 25.0%
!! AAGTTTACTTCTTTTCATCT+GGG + chr2_4:51969829-51969848 Msa0333900:CDS 25.0%
! TATTTAAAAATGGGTGTATG+TGG + chr2_4:51969905-51969924 Msa0333900:CDS 25.0%
! ATTTAAAAATGGGTGTATGT+GGG + chr2_4:51969906-51969925 Msa0333900:CDS 25.0%
! AAAGGATTTGGATTCAATAA+TGG + chr2_4:51969979-51969998 Msa0333900:CDS 25.0%
! AAAAGGTAAACCTATTTGAT+TGG - chr2_4:51970647-51970666 None:intergenic 25.0%
! ATTCTACAAGGAGTTTAAAA+AGG - chr2_4:51970664-51970683 None:intergenic 25.0%
! TAGATAGGTTATGTGAAATT+TGG - chr2_4:51970737-51970756 None:intergenic 25.0%
! TAGAAGACATTATCAACTAA+GGG - chr2_4:51970978-51970997 None:intergenic 25.0%
!!! TTTACATGTATAAGTTTTGG+AGG - chr2_4:51971015-51971034 None:intergenic 25.0%
!!! CTTTTACACTTTTTAAACGA+TGG + chr2_4:51971207-51971226 Msa0333900:intron 25.0%
!! AATGTACTAATAACTTGTGA+AGG - chr2_4:51971710-51971729 None:intergenic 25.0%
! GCTAATTATACTTACTAACA+TGG - chr2_4:51971900-51971919 None:intergenic 25.0%
! AACCATACACAATTACATAT+TGG - chr2_4:51971946-51971965 None:intergenic 25.0%
! CTTCAATATTATGTTTGCAT+AGG - chr2_4:51972047-51972066 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG + chr2_4:51972047-51972066 Msa0333900:intron 25.0%
! CTTCAATATTATGTTTGCAT+AGG - chr2_4:51972047-51972066 None:intergenic 25.0%
! ATGCAAACATAATATTGAAG+AGG + chr2_4:51972047-51972066 Msa0333900:intron 25.0%
! TGAACAAATACTTGAAAACA+AGG + chr2_4:51972186-51972205 Msa0333900:intron 25.0%
!! TTCTTCATAACTGATTTCAT+AGG - chr2_4:51972408-51972427 None:intergenic 25.0%
! AATGGTTAGGTTAATTATAC+AGG - chr2_4:51972510-51972529 None:intergenic 25.0%
! GTATTCAGCAAATATATTGT+TGG + chr2_4:51972561-51972580 Msa0333900:intron 25.0%
! TTGGTAAACCAAGATAATAA+AGG - chr2_4:51972877-51972896 None:intergenic 25.0%
! GTTACAAAAAACAATACTTG+TGG + chr2_4:51972922-51972941 Msa0333900:three_prime_UTR 25.0%
TGTGTCAAATATCATCTTTG+AGG - chr2_4:51969593-51969612 None:intergenic 30.0%
TGTACTAATGGAGTTAGAAA+AGG - chr2_4:51969672-51969691 None:intergenic 30.0%
ACATGGGGAATATTGTATAT+GGG - chr2_4:51969711-51969730 None:intergenic 30.0%
AAATTGGAGAAAGAAAAGGT+GGG - chr2_4:51969802-51969821 None:intergenic 30.0%
TAAATTGGAGAAAGAAAAGG+TGG - chr2_4:51969803-51969822 None:intergenic 30.0%
GTCTAAATTGGAGAAAGAAA+AGG - chr2_4:51969806-51969825 None:intergenic 30.0%
AGTAAACTTTGGGTCTAAAT+TGG - chr2_4:51969818-51969837 None:intergenic 30.0%
TTGATGCTATTGTTTCCATT+TGG + chr2_4:51970109-51970128 Msa0333900:CDS 30.0%
TGATGCTATTGTTTCCATTT+GGG + chr2_4:51970110-51970129 Msa0333900:CDS 30.0%
CACACACCTTGTATTTATAA+TGG - chr2_4:51970212-51970231 None:intergenic 30.0%
! ATGTGTAAAGCATTTACAAG+AGG - chr2_4:51970399-51970418 None:intergenic 30.0%
GTTGCTACCTCTTAAAATTT+AGG - chr2_4:51970530-51970549 None:intergenic 30.0%
CAATTATGAGCCAATCAAAT+AGG + chr2_4:51970634-51970653 Msa0333900:intron 30.0%
ATTAGAAGAATGTTGCAATC+AGG - chr2_4:51970697-51970716 None:intergenic 30.0%
TGTTTCTTGCTTCTTTAGAT+AGG - chr2_4:51970752-51970771 None:intergenic 30.0%
ACTGAATAAAGATTAAGCGA+AGG + chr2_4:51970792-51970811 Msa0333900:intron 30.0%
CTACATTATTAGGCTATTTG+TGG + chr2_4:51970862-51970881 Msa0333900:intron 30.0%
CTAGAAGACATTATCAACTA+AGG - chr2_4:51970979-51970998 None:intergenic 30.0%
!!! ACGATGGATTATTTTTCTTG+TGG + chr2_4:51971223-51971242 Msa0333900:intron 30.0%
TGAAAATCATTTCCACAGTT+TGG - chr2_4:51971298-51971317 None:intergenic 30.0%
! AAACTGTGGAAATGATTTTC+AGG + chr2_4:51971297-51971316 Msa0333900:CDS 30.0%
CTGCAATTCTTCATTTAAAG+TGG - chr2_4:51971438-51971457 None:intergenic 30.0%
! TACTGATGGATGATAAAACA+CGG - chr2_4:51971518-51971537 None:intergenic 30.0%
!! GATTGGTTTGAAAAATTCAC+AGG - chr2_4:51971636-51971655 None:intergenic 30.0%
TCAAACCAATCTACAACATT+TGG + chr2_4:51971645-51971664 Msa0333900:CDS 30.0%
!! AATTTCTCGCGTTCTAAAAA+TGG + chr2_4:51971681-51971700 Msa0333900:CDS 30.0%
TTATCCCTTATCTTTGTTGA+TGG + chr2_4:51971770-51971789 Msa0333900:intron 30.0%
!! TCAATCTGCGTCTTTTATTT+CGG - chr2_4:51971859-51971878 None:intergenic 30.0%
TGCCAATATGTAATTGTGTA+TGG + chr2_4:51971941-51971960 Msa0333900:intron 30.0%
! TTGCAATTCAGTGAAAGTAT+TGG - chr2_4:51971972-51971991 None:intergenic 30.0%
TACTTGGAAATTAAGCCATT+AGG - chr2_4:51972361-51972380 None:intergenic 30.0%
CATAGGAAAATAGTTTCACT+TGG - chr2_4:51972391-51972410 None:intergenic 30.0%
GAAATCAGTTATGAAGAATC+TGG + chr2_4:51972410-51972429 Msa0333900:intron 30.0%
!! TATGAGTGCATTTTAGAGAT+TGG + chr2_4:51972452-51972471 Msa0333900:intron 30.0%
! AACATTGACTAGGATTCAAA+TGG - chr2_4:51972528-51972547 None:intergenic 30.0%
AAATTCTCGTTCAGTTAAAC+AGG + chr2_4:51972679-51972698 Msa0333900:three_prime_UTR 30.0%
! CAGATTAATGTATTCTAGAG+AGG + chr2_4:51972773-51972792 Msa0333900:three_prime_UTR 30.0%
! TAATGTATTCTAGAGAGGAT+AGG + chr2_4:51972778-51972797 Msa0333900:three_prime_UTR 30.0%
ATACCACACCTTTATTATCT+TGG + chr2_4:51972866-51972885 Msa0333900:three_prime_UTR 30.0%
AAACCAAGATAATAAAGGTG+TGG - chr2_4:51972872-51972891 None:intergenic 30.0%
! AGAAGATTGAAGATACGTTT+TGG - chr2_4:51972896-51972915 None:intergenic 30.0%
TTGGAAAGAACAACATGTGA+AGG + chr2_4:51969527-51969546 Msa0333900:five_prime_UTR 35.0%
GACATGGGGAATATTGTATA+TGG - chr2_4:51969712-51969731 None:intergenic 35.0%
AATTGTACAAGAGTGGACAT+GGG - chr2_4:51969727-51969746 None:intergenic 35.0%
GATAGAGAATTGTACAAGAG+TGG - chr2_4:51969734-51969753 None:intergenic 35.0%
! TTTACTTCTTTTCATCTGGG+TGG + chr2_4:51969832-51969851 Msa0333900:CDS 35.0%
GAGGCGCAGTATTTAAAAAT+GGG + chr2_4:51969896-51969915 Msa0333900:CDS 35.0%
GGATTTGGATTCAATAATGG+TGG + chr2_4:51969982-51970001 Msa0333900:CDS 35.0%
TTTGGATTCAATAATGGTGG+AGG + chr2_4:51969985-51970004 Msa0333900:CDS 35.0%
TTGACTTATCTCTCAATGAC+TGG + chr2_4:51970069-51970088 Msa0333900:CDS 35.0%
! TAATTAGTAAGCACTAGCCT+AGG - chr2_4:51970164-51970183 None:intergenic 35.0%
!! ATTTTAATGGGGCAACATCA+GGG - chr2_4:51970297-51970316 None:intergenic 35.0%
!!! TATTTTAATGGGGCAACATC+AGG - chr2_4:51970298-51970317 None:intergenic 35.0%
ATTTACAAGAGGCTAATTCC+GGG - chr2_4:51970388-51970407 None:intergenic 35.0%
CATTTACAAGAGGCTAATTC+CGG - chr2_4:51970389-51970408 None:intergenic 35.0%
GTAAATGCTTTACACATGCA+AGG + chr2_4:51970402-51970421 Msa0333900:intron 35.0%
TCTATGATAGGGTCATATGA+TGG + chr2_4:51970434-51970453 Msa0333900:intron 35.0%
!! CCTTACAAGTCAGTTTTGTA+CGG + chr2_4:51970489-51970508 Msa0333900:intron 35.0%
!! CTTACAAGTCAGTTTTGTAC+GGG + chr2_4:51970490-51970509 Msa0333900:intron 35.0%
! GGCTCAACCTAAATTTTAAG+AGG + chr2_4:51970520-51970539 Msa0333900:intron 35.0%
AGAATGTTGCAATCAGGATA+GGG - chr2_4:51970691-51970710 None:intergenic 35.0%
AAGAATGTTGCAATCAGGAT+AGG - chr2_4:51970692-51970711 None:intergenic 35.0%
!! ATATAATGAAAGGCACTGTG+AGG + chr2_4:51971143-51971162 Msa0333900:intron 35.0%
AAAAAGGTTGACCGCAAAAT+GGG - chr2_4:51971466-51971485 None:intergenic 35.0%
! TGATGGTAATGAGTTTGTCA+AGG + chr2_4:51971608-51971627 Msa0333900:CDS 35.0%
CTTGTCCAAATGTTGTAGAT+TGG - chr2_4:51971653-51971672 None:intergenic 35.0%
AGCACCATCAACAAAGATAA+GGG - chr2_4:51971777-51971796 None:intergenic 35.0%
CGAAACAGACATGAAATCTT+AGG + chr2_4:51972228-51972247 Msa0333900:intron 35.0%
! GTTGCTATTAAGAAAAGCAC+AGG - chr2_4:51972269-51972288 None:intergenic 35.0%
CTTATATAGCTCACTCCTAA+TGG + chr2_4:51972343-51972362 Msa0333900:intron 35.0%
TTCACTTGGTTCACATTACT+TGG - chr2_4:51972377-51972396 None:intergenic 35.0%
! AGTTATGAAGAATCTGGAAC+TGG + chr2_4:51972416-51972435 Msa0333900:intron 35.0%
TGACTAGGATTCAAATGGTT+AGG - chr2_4:51972523-51972542 None:intergenic 35.0%
ATTGTACAAGAGTGGACATG+GGG - chr2_4:51969726-51969745 None:intergenic 40.0%
GAATTGTACAAGAGTGGACA+TGG - chr2_4:51969728-51969747 None:intergenic 40.0%
!! TTTCAAGTTGAGAGCATGCA+GGG + chr2_4:51969855-51969874 Msa0333900:CDS 40.0%
! GGAGGCGCAGTATTTAAAAA+TGG + chr2_4:51969895-51969914 Msa0333900:CDS 40.0%
!! GATTTTGGGAAATCTTGCTC+TGG + chr2_4:51970038-51970057 Msa0333900:CDS 40.0%
! AGGCAAGGAATGTCTTTTTC+AGG - chr2_4:51970472-51970491 None:intergenic 40.0%
!! CAAAACTGACTTGTAAGGCA+AGG - chr2_4:51970487-51970506 None:intergenic 40.0%
!! CCGTACAAAACTGACTTGTA+AGG - chr2_4:51970492-51970511 None:intergenic 40.0%
!! CAGTTTTGTACGGGTGAATA+AGG + chr2_4:51970499-51970518 Msa0333900:intron 40.0%
TGAACGTTAACACAGCAGTA+AGG - chr2_4:51970559-51970578 None:intergenic 40.0%
TGTTGCAAGATGATAGCAAG+AGG - chr2_4:51970583-51970602 None:intergenic 40.0%
AATGTTGCAATCAGGATAGG+GGG - chr2_4:51970689-51970708 None:intergenic 40.0%
GAATGTTGCAATCAGGATAG+GGG - chr2_4:51970690-51970709 None:intergenic 40.0%
TATTCCCACACAGATCTTTG+CGG + chr2_4:51971069-51971088 Msa0333900:intron 40.0%
!! TTAGTACCGATAGTAGGTCT+TGG + chr2_4:51971094-51971113 Msa0333900:CDS 40.0%
! AAAGCACCAAGACCTACTAT+CGG - chr2_4:51971103-51971122 None:intergenic 40.0%
GCAGGTCGAGATATAATGAA+AGG + chr2_4:51971133-51971152 Msa0333900:CDS 40.0%
TATATGCAGTGTCCAAACTG+TGG + chr2_4:51971283-51971302 Msa0333900:intron 40.0%
GAAAAAGGTTGACCGCAAAA+TGG - chr2_4:51971467-51971486 None:intergenic 40.0%
! TTTTGCGGTCAACCTTTTTC+TGG + chr2_4:51971467-51971486 Msa0333900:CDS 40.0%
!! AACCTTTTTCTGGTAAGCTG+TGG + chr2_4:51971477-51971496 Msa0333900:intron 40.0%
AACCACAGCTTACCAGAAAA+AGG - chr2_4:51971482-51971501 None:intergenic 40.0%
CAGCACCATCAACAAAGATA+AGG - chr2_4:51971778-51971797 None:intergenic 40.0%
GTGTTTCCGTGTTTCGTTTA+TGG + chr2_4:51971797-51971816 Msa0333900:intron 40.0%
TGTCTGCCATAAACGAAACA+CGG - chr2_4:51971806-51971825 None:intergenic 40.0%
TGTTTCGTTTATGGCAGACA+AGG + chr2_4:51971806-51971825 Msa0333900:intron 40.0%
TTTATGGCAGACAAGGATTC+TGG + chr2_4:51971813-51971832 Msa0333900:intron 40.0%
! AGCTATATAAGCGAGAGCAT+TGG - chr2_4:51972334-51972353 None:intergenic 40.0%
! AAGAATCTGGAACTGGAATG+TGG + chr2_4:51972423-51972442 Msa0333900:intron 40.0%
! GGACATACTCAACATTGACT+AGG - chr2_4:51972538-51972557 None:intergenic 40.0%
TGGCAAGTGTTCGTTGGATT+TGG + chr2_4:51969508-51969527 Msa0333900:five_prime_UTR 45.0%
GGTTTAGACATGTCGTCGAA+TGG - chr2_4:51969651-51969670 None:intergenic 45.0%
!! GTTTCAAGTTGAGAGCATGC+AGG + chr2_4:51969854-51969873 Msa0333900:CDS 45.0%
!!! AGGGAGAGGTGCTCTTTTTT+GGG + chr2_4:51969874-51969893 Msa0333900:CDS 45.0%
TGGGTGTATGTGGGAAGAAA+AGG + chr2_4:51969915-51969934 Msa0333900:CDS 45.0%
GGGTGTATGTGGGAAGAAAA+GGG + chr2_4:51969916-51969935 Msa0333900:CDS 45.0%
GGTGTATGTGGGAAGAAAAG+GGG + chr2_4:51969917-51969936 Msa0333900:CDS 45.0%
! GGATTCAATAATGGTGGAGG+TGG + chr2_4:51969988-51970007 Msa0333900:CDS 45.0%
! TTCAATAATGGTGGAGGTGG+TGG + chr2_4:51969991-51970010 Msa0333900:CDS 45.0%
! TGGTAGCACTGCTAGGATTT+TGG + chr2_4:51970023-51970042 Msa0333900:CDS 45.0%
! GGTAGCACTGCTAGGATTTT+GGG + chr2_4:51970024-51970043 Msa0333900:CDS 45.0%
CTCTCAATGACTGGACAACT+TGG + chr2_4:51970078-51970097 Msa0333900:CDS 45.0%
!! AGAGAGAGAGAGTACCCAAA+TGG - chr2_4:51970127-51970146 None:intergenic 45.0%
TCTCTCTCTCTTGGTTTCCT+AGG + chr2_4:51970144-51970163 Msa0333900:intron 45.0%
AGGTAAGACGCGTCTATGAT+AGG + chr2_4:51970422-51970441 Msa0333900:intron 45.0%
GGTAAGACGCGTCTATGATA+GGG + chr2_4:51970423-51970442 Msa0333900:intron 45.0%
TAACACAGCAGTAAGGTTGC+TGG - chr2_4:51970552-51970571 None:intergenic 45.0%
AACACCGCAAAGATCTGTGT+GGG - chr2_4:51971076-51971095 None:intergenic 45.0%
TAACACCGCAAAGATCTGTG+TGG - chr2_4:51971077-51971096 None:intergenic 45.0%
! TTGCAGTTGTGCCCATTTTG+CGG + chr2_4:51971452-51971471 Msa0333900:CDS 45.0%
! ATCTGGAACTGGAATGTGGT+TGG + chr2_4:51972427-51972446 Msa0333900:intron 45.0%
!!! CAGGGAGAGGTGCTCTTTTT+TGG + chr2_4:51969873-51969892 Msa0333900:CDS 50.0%
!!! GAGAGGTGCTCTTTTTTGGG+AGG + chr2_4:51969877-51969896 Msa0333900:CDS 50.0%
! GGAAGAAAAGGGGTGCAAGA+GGG + chr2_4:51969927-51969946 Msa0333900:CDS 50.0%
GTGCAAGAGGGAAAAGAGAG+TGG + chr2_4:51969939-51969958 Msa0333900:CDS 50.0%
! GAGATGATGGTAGCACTGCT+AGG + chr2_4:51970016-51970035 Msa0333900:CDS 50.0%
GAAATCTTGCTCTGGCTGCT+GGG + chr2_4:51970046-51970065 Msa0333900:CDS 50.0%
CAATGACTGGACAACTTGGC+TGG + chr2_4:51970082-51970101 Msa0333900:CDS 50.0%
CTCTCTCTCTCTCTCTCTCT+TGG + chr2_4:51970135-51970154 Msa0333900:intron 50.0%
GGATAGGGGGAGATTCTACA+AGG - chr2_4:51970676-51970695 None:intergenic 50.0%
!! GCGGTGTTAGTACCGATAGT+AGG + chr2_4:51971088-51971107 Msa0333900:CDS 50.0%
!! TAGGTCTTGGTGCTTTCCTC+TGG + chr2_4:51971107-51971126 Msa0333900:CDS 50.0%
!! TCTTGGTGCTTTCCTCTGGT+GGG + chr2_4:51971111-51971130 Msa0333900:CDS 50.0%
TCGTTCAGTTAAACAGGCCG+TGG + chr2_4:51972685-51972704 Msa0333900:three_prime_UTR 50.0%
ACTCGTTGCGTCTTAAGCAC+CGG - chr2_4:51972721-51972740 None:intergenic 50.0%
CCAACGAACACTTGCCACGT+TGG - chr2_4:51969505-51969524 None:intergenic 55.0%
CCAACGTGGCAAGTGTTCGT+TGG + chr2_4:51969502-51969521 Msa0333900:five_prime_UTR 55.0%
! AGTTGAGAGCATGCAGGGAG+AGG + chr2_4:51969860-51969879 Msa0333900:CDS 55.0%
! GGGAAGAAAAGGGGTGCAAG+AGG + chr2_4:51969926-51969945 Msa0333900:CDS 55.0%
!! GGAGGTGGTGGAAGAGATGA+TGG + chr2_4:51970003-51970022 Msa0333900:CDS 55.0%
GGAAATCTTGCTCTGGCTGC+TGG + chr2_4:51970045-51970064 Msa0333900:CDS 55.0%
!! GTCTTGGTGCTTTCCTCTGG+TGG + chr2_4:51971110-51971129 Msa0333900:CDS 55.0%
!! AGGCCGTGGCTTGCATTTTC+CGG + chr2_4:51972699-51972718 Msa0333900:three_prime_UTR 55.0%
GCACCGGAAAATGCAAGCCA+CGG - chr2_4:51972705-51972724 None:intergenic 55.0%
TATCTCGACCTGCCCACCAG+AGG - chr2_4:51971126-51971145 None:intergenic 60.0%
! GGTGCTTTCCTCTGGTGGGC+AGG + chr2_4:51971115-51971134 Msa0333900:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 51969495 51972947 51969495 ID=Msa0333900;Name=Msa0333900
chr2_4 mRNA 51969495 51972947 51969495 ID=Msa0333900-mRNA-1;Parent=Msa0333900;Name=Msa0333900-mRNA-1;_AED=0.10;_eAED=0.10;_QI=232|1|1|1|0.83|0.71|7|312|241
chr2_4 exon 51969495 51970131 51969495 ID=Msa0333900-mRNA-1:exon:15595;Parent=Msa0333900-mRNA-1
chr2_4 exon 51971082 51971159 51971082 ID=Msa0333900-mRNA-1:exon:15596;Parent=Msa0333900-mRNA-1
chr2_4 exon 51971292 51971326 51971292 ID=Msa0333900-mRNA-1:exon:15597;Parent=Msa0333900-mRNA-1
chr2_4 exon 51971433 51971488 51971433 ID=Msa0333900-mRNA-1:exon:15598;Parent=Msa0333900-mRNA-1
chr2_4 exon 51971607 51971702 51971607 ID=Msa0333900-mRNA-1:exon:15599;Parent=Msa0333900-mRNA-1
chr2_4 exon 51971823 51971904 51971823 ID=Msa0333900-mRNA-1:exon:15600;Parent=Msa0333900-mRNA-1
chr2_4 exon 51972662 51972947 51972662 ID=Msa0333900-mRNA-1:exon:15601;Parent=Msa0333900-mRNA-1
chr2_4 five_prime_UTR 51969495 51969726 51969495 ID=Msa0333900-mRNA-1:five_prime_utr;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51969727 51970131 51969727 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51971082 51971159 51971082 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51971292 51971326 51971292 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51971433 51971488 51971433 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51971607 51971702 51971607 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 CDS 51971823 51971878 51971823 ID=Msa0333900-mRNA-1:cds;Parent=Msa0333900-mRNA-1
chr2_4 three_prime_UTR 51971879 51971904 51971879 ID=Msa0333900-mRNA-1:three_prime_utr;Parent=Msa0333900-mRNA-1
chr2_4 three_prime_UTR 51972662 51972947 51972662 ID=Msa0333900-mRNA-1:three_prime_utr;Parent=Msa0333900-mRNA-1
Gene Sequence

>Msa0333900

ATGTCCACTCTTGTACAATTCTCTATCAAATTTTCACACTTGAAACCCAATGATAACATATACAAGACACAACCCACCTTTTCTTTCTCCAATTTAGACCCAAAGTTTACTTCTTTTCATCTGGGTGGTTTCAAGTTGAGAGCATGCAGGGAGAGGTGCTCTTTTTTGGGAGGCGCAGTATTTAAAAATGGGTGTATGTGGGAAGAAAAGGGGTGCAAGAGGGAAAAGAGAGTGGTTTTAGTAAAGAATAATAAAGGATTTGGATTCAATAATGGTGGAGGTGGTGGAAGAGATGATGGTAGCACTGCTAGGATTTTGGGAAATCTTGCTCTGGCTGCTGGGTTGACTTATCTCTCAATGACTGGACAACTTGGCTGGATAATTGATGCTATTGTTTCCATTTGGATCTTTGCGGTGTTAGTACCGATAGTAGGTCTTGGTGCTTTCCTCTGGTGGGCAGGTCGAGATATAATGAAAGGCACTTGTCCAAACTGTGGAAATGATTTTCAGGTTTTCAAATCCACTTTAAATGAAGAATTGCAGTTGTGCCCATTTTGCGGTCAACCTTTTTCTGTTGATGGTAATGAGTTTGTCAAGGAACCTGTGAATTTTTCAAACCAATCTACAACATTTGGACAAGCATTCGACAATTTCTCGCGTTCTAAAAATGACAAGGATTCTGGTAGAGCAATTGATGTTGAAGCCGAAATAAAAGACGCAGATTGA

Protein sequence

>Msa0333900

MSTLVQFSIKFSHLKPNDNIYKTQPTFSFSNLDPKFTSFHLGGFKLRACRERCSFLGGAVFKNGCMWEEKGCKREKRVVLVKNNKGFGFNNGGGGGRDDGSTARILGNLALAAGLTYLSMTGQLGWIIDAIVSIWIFAVLVPIVGLGAFLWWAGRDIMKGTCPNCGNDFQVFKSTLNEELQLCPFCGQPFSVDGNEFVKEPVNFSNQSTTFGQAFDNFSRSKNDKDSGRAIDVEAEIKDAD*