AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1002980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002980 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa1002980 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa1002980 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa1002980 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa1002980 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa1002980 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa1002980 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa1002980 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa1002980 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa1002980 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa1002980 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa1002980 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa1002980 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa1002980 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa1002980 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa1002980 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa1002980 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa1002980 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa1002980 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa1002980 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa1002980 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa1002980 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa1002980 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa1002980 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1002980 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa1002980 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa1002980 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa1002980 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa1002980 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa1002980 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1002980 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1002980 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa1002980 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa1002980 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa1002980 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1002980 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1002980 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa1002980 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa1002980 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa1002980 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa1002980 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa1002980 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa1002980 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa1002980 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1002980 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1002980 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1002980 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa1002980 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa1002980 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa1002980 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa1002980 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa1002980 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa1002980 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1002980 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1002980 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1002980 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1002980 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa1002980 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa1002980 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa1002980 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa1002980 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa1002980 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa1002980 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1002980 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1002980 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1002980 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1002980 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1002980 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 6_4:+89793927 Msa1002980:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 6_4:-89796825 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 6_4:+89794741 Msa1002980:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 6_4:+89794966 Msa1002980:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 6_4:+89796457 Msa1002980:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 6_4:-89794775 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 6_4:+89796893 Msa1002980:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 6_4:-89793778 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 6_4:-89795398 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 6_4:+89796650 Msa1002980:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 6_4:+89794732 Msa1002980:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 6_4:+89796686 Msa1002980:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 6_4:-89796832 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 6_4:-89794685 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 6_4:+89794460 Msa1002980:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 6_4:-89793750 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 6_4:-89794755 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 6_4:-89793846 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 6_4:+89795119 Msa1002980:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 6_4:+89796863 Msa1002980:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 6_4:+89794498 Msa1002980:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 6_4:+89796637 Msa1002980:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 6_4:+89793944 Msa1002980:CDS
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 6_4:+89794916 Msa1002980:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 6_4:+89796577 Msa1002980:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 6_4:+89794705 Msa1002980:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 6_4:-89796797 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 6_4:+89793816 Msa1002980:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 6_4:+89794967 Msa1002980:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 6_4:+89796472 Msa1002980:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 6_4:+89793902 Msa1002980:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 6_4:+89794972 Msa1002980:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 6_4:+89794910 Msa1002980:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 6_4:+89794434 Msa1002980:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 6_4:+89796733 Msa1002980:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 6_4:+89794789 Msa1002980:CDS
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 6_4:+89795350 Msa1002980:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 6_4:-89794420 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 6_4:+89796559 Msa1002980:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 6_4:+89796734 Msa1002980:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 6_4:+89795101 Msa1002980:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 6_4:-89794794 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 6_4:+89794453 Msa1002980:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 6_4:-89794950 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 6_4:+89796644 Msa1002980:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 6_4:+89796435 Msa1002980:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 6_4:+89796477 Msa1002980:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 6_4:-89795368 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 6_4:+89794717 Msa1002980:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 6_4:-89794430 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 6_4:+89796640 Msa1002980:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 6_4:-89794957 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 6_4:+89794971 Msa1002980:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 6_4:+89796504 Msa1002980:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 6_4:+89795104 Msa1002980:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 6_4:+89795344 Msa1002980:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 6_4:-89793938 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 6_4:-89796745 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 6_4:-89795393 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 6_4:-89794953 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 6_4:+89796526 Msa1002980:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 6_4:+89794721 Msa1002980:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 6_4:+89794985 Msa1002980:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 6_4:+89794413 Msa1002980:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 6_4:-89796609 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 6_4:+89796641 Msa1002980:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 6_4:+89794680 Msa1002980:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 6_4:+89795389 Msa1002980:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 6_4:-89796698 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 6_4:-89796589 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 6_4:+89794970 Msa1002980:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 6_4:+89795122 Msa1002980:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 6_4:-89796465 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 6_4:+89796488 Msa1002980:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 6_4:+89794448 Msa1002980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG - chr6_4:89795582-89795601 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG - chr6_4:89795838-89795857 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG + chr6_4:89794370-89794389 Msa1002980:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG + chr6_4:89794371-89794390 Msa1002980:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG - chr6_4:89795255-89795274 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG + chr6_4:89795526-89795545 Msa1002980:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG - chr6_4:89795839-89795858 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG - chr6_4:89796004-89796023 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG - chr6_4:89796835-89796854 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG + chr6_4:89794235-89794254 Msa1002980:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG + chr6_4:89794338-89794357 Msa1002980:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG + chr6_4:89794372-89794391 Msa1002980:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG + chr6_4:89794812-89794831 Msa1002980:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG + chr6_4:89795087-89795106 Msa1002980:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG + chr6_4:89795272-89795291 Msa1002980:intron 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG - chr6_4:89795456-89795475 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG - chr6_4:89795457-89795476 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG + chr6_4:89795463-89795482 Msa1002980:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG + chr6_4:89795464-89795483 Msa1002980:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG - chr6_4:89795652-89795671 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG - chr6_4:89795688-89795707 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG - chr6_4:89795874-89795893 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG - chr6_4:89795875-89795894 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG + chr6_4:89795875-89795894 Msa1002980:intron 20.0%
!! TTACATACAAGGAATATTAT+GGG + chr6_4:89795876-89795895 Msa1002980:intron 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG + chr6_4:89796045-89796064 Msa1002980:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG - chr6_4:89796828-89796847 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG + chr6_4:89796893-89796912 Msa1002980:three_prime_UTR 20.0%
!!! GACTAACAAGAAACTTTTTT+GGG - chr6_4:89793877-89793896 None:intergenic 25.0%
!!! TGACTAACAAGAAACTTTTT+TGG - chr6_4:89793878-89793897 None:intergenic 25.0%
! AAAAAGTTTCTTGTTAGTCA+TGG + chr6_4:89793878-89793897 Msa1002980:exon 25.0%
! ATAAGAATTAGATAGTAACC+TGG - chr6_4:89793965-89793984 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG - chr6_4:89794010-89794029 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG - chr6_4:89794011-89794030 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG + chr6_4:89794337-89794356 Msa1002980:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG - chr6_4:89794560-89794579 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG + chr6_4:89794557-89794576 Msa1002980:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG + chr6_4:89794581-89794600 Msa1002980:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG + chr6_4:89794594-89794613 Msa1002980:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG + chr6_4:89794631-89794650 Msa1002980:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG + chr6_4:89794702-89794721 Msa1002980:CDS 25.0%
! AATCAAAGATTTCATGATTC+AGG + chr6_4:89794966-89794985 Msa1002980:CDS 25.0%
! ATCAAAGATTTCATGATTCA+GGG + chr6_4:89794967-89794986 Msa1002980:CDS 25.0%
! AGCGTACTAACAAAATATAA+CGG - chr6_4:89795022-89795041 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG + chr6_4:89795094-89795113 Msa1002980:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG + chr6_4:89795095-89795114 Msa1002980:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG + chr6_4:89795229-89795248 Msa1002980:intron 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG + chr6_4:89795418-89795437 Msa1002980:CDS 25.0%
! TACTTTATGAATCAGATAAG+GGG + chr6_4:89795465-89795484 Msa1002980:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG + chr6_4:89795769-89795788 Msa1002980:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG - chr6_4:89795807-89795826 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG + chr6_4:89795807-89795826 Msa1002980:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG - chr6_4:89795834-89795853 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG + chr6_4:89796031-89796050 Msa1002980:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG + chr6_4:89796085-89796104 Msa1002980:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG - chr6_4:89796128-89796147 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG - chr6_4:89796129-89796148 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG + chr6_4:89796162-89796181 Msa1002980:intron 25.0%
! TTTGACAATTTAACATCAAC+AGG + chr6_4:89796196-89796215 Msa1002980:intron 25.0%
! TTGACAATTTAACATCAACA+GGG + chr6_4:89796197-89796216 Msa1002980:intron 25.0%
! TGCAATCAAAGTCAATAAAA+AGG - chr6_4:89796249-89796268 None:intergenic 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG - chr6_4:89796553-89796572 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG - chr6_4:89796554-89796573 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG + chr6_4:89796733-89796752 Msa1002980:three_prime_UTR 25.0%
! ATAATTAAATGCCACTGAAA+GGG + chr6_4:89796734-89796753 Msa1002980:three_prime_UTR 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG + chr6_4:89796762-89796781 Msa1002980:three_prime_UTR 25.0%
!!! TAACAAGAAACTTTTTTGGG+TGG - chr6_4:89793874-89793893 None:intergenic 30.0%
ATGCTATAAGCTGCAAATTA+AGG - chr6_4:89794027-89794046 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG + chr6_4:89794311-89794330 Msa1002980:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG + chr6_4:89794705-89794724 Msa1002980:CDS 30.0%
! TATGAGTATTGTGGTGAAAT+TGG + chr6_4:89794849-89794868 Msa1002980:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG + chr6_4:89794901-89794920 Msa1002980:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG - chr6_4:89794960-89794979 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG + chr6_4:89795048-89795067 Msa1002980:intron 30.0%
ACATATACACATGATGCTAA+GGG + chr6_4:89795049-89795068 Msa1002980:intron 30.0%
CCACTTAAAAATACATTTCC+AGG - chr6_4:89795771-89795790 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG + chr6_4:89795768-89795787 Msa1002980:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG - chr6_4:89795801-89795820 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG - chr6_4:89795802-89795821 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG - chr6_4:89796029-89796048 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG - chr6_4:89796092-89796111 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG + chr6_4:89796431-89796450 Msa1002980:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG + chr6_4:89796559-89796578 Msa1002980:CDS 30.0%
TGTCAATTACAATGCAGTTA+AGG + chr6_4:89796637-89796656 Msa1002980:three_prime_UTR 30.0%
AATTACAATGCAGTTAAGGA+GGG + chr6_4:89796641-89796660 Msa1002980:three_prime_UTR 30.0%
AGTCTGCTAATGCATAATAT+AGG - chr6_4:89796800-89796819 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG + chr6_4:89796863-89796882 Msa1002980:three_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG - chr6_4:89793781-89793800 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG - chr6_4:89793849-89793868 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG - chr6_4:89793865-89793884 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG + chr6_4:89793902-89793921 Msa1002980:CDS 35.0%
ATGACAATTTACTGCATCCA+AGG - chr6_4:89794433-89794452 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG + chr6_4:89794498-89794517 Msa1002980:CDS 35.0%
! GAAAACCTTGCTTGTTACTT+TGG - chr6_4:89794688-89794707 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG + chr6_4:89794741-89794760 Msa1002980:CDS 35.0%
! CGGAAATTCTCAACTGTTTT+GGG - chr6_4:89794777-89794796 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG - chr6_4:89794778-89794797 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG + chr6_4:89794840-89794859 Msa1002980:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG - chr6_4:89794956-89794975 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG + chr6_4:89794970-89794989 Msa1002980:CDS 35.0%
AAGATTTCATGATTCAGGGA+GGG + chr6_4:89794971-89794990 Msa1002980:CDS 35.0%
! TCTTTTTACTGGACTGTCAA+TGG + chr6_4:89795283-89795302 Msa1002980:intron 35.0%
AATTGACTGCCGTTACTATT+AGG - chr6_4:89795401-89795420 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG + chr6_4:89795865-89795884 Msa1002980:intron 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG - chr6_4:89795986-89796005 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG - chr6_4:89796338-89796357 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG - chr6_4:89796468-89796487 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG + chr6_4:89796472-89796491 Msa1002980:CDS 35.0%
CAATTACAATGCAGTTAAGG+AGG + chr6_4:89796640-89796659 Msa1002980:three_prime_UTR 35.0%
! ATCCTTTTAGATAACACGCG+TGG + chr6_4:89793748-89793767 Msa1002980:five_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG - chr6_4:89793753-89793772 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG + chr6_4:89793816-89793835 Msa1002980:five_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG - chr6_4:89793941-89793960 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG + chr6_4:89794434-89794453 Msa1002980:CDS 40.0%
GTCATCAGGATATCATTACG+CGG + chr6_4:89794448-89794467 Msa1002980:CDS 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG - chr6_4:89794611-89794630 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG + chr6_4:89794613-89794632 Msa1002980:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG + chr6_4:89794647-89794666 Msa1002980:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG + chr6_4:89794732-89794751 Msa1002980:CDS 40.0%
TGGGAACAACATCTCCAAAT+AGG - chr6_4:89794758-89794777 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG + chr6_4:89794910-89794929 Msa1002980:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG - chr6_4:89794953-89794972 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG + chr6_4:89794972-89794991 Msa1002980:CDS 40.0%
TTTAATTGGATGCAGGGAAC+TGG + chr6_4:89795101-89795120 Msa1002980:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG + chr6_4:89795389-89795408 Msa1002980:CDS 40.0%
AGATGGGAAAATAGTCTCAC+CGG - chr6_4:89795440-89795459 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG + chr6_4:89795745-89795764 Msa1002980:intron 40.0%
GGCCATATCTCATTTAACGT+GGG - chr6_4:89795750-89795769 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG - chr6_4:89795751-89795770 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG + chr6_4:89795750-89795769 Msa1002980:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG + chr6_4:89796435-89796454 Msa1002980:intron 40.0%
GACAATCGCCATGTTGTATT+TGG + chr6_4:89796457-89796476 Msa1002980:CDS 40.0%
TGGACATGTCATTGATGGAA+TGG + chr6_4:89796477-89796496 Msa1002980:CDS 40.0%
TTGATGGAATGGATGTTGTG+AGG + chr6_4:89796488-89796507 Msa1002980:CDS 40.0%
AGGATAGATCAACCATCTAG+AGG - chr6_4:89796592-89796611 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG - chr6_4:89796612-89796631 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG + chr6_4:89796686-89796705 Msa1002980:three_prime_UTR 40.0%
AGCAATGACAATCCAAACAC+AGG - chr6_4:89796701-89796720 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG + chr6_4:89793927-89793946 Msa1002980:CDS 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG + chr6_4:89793944-89793963 Msa1002980:CDS 45.0%
GCAAGCCAAAGTAACAAGCA+AGG + chr6_4:89794680-89794699 Msa1002980:CDS 45.0%
GTTATTGGAGGTGAATCTGC+TGG + chr6_4:89794717-89794736 Msa1002980:CDS 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG + chr6_4:89794789-89794808 Msa1002980:CDS 45.0%
TGTGCAGGAGAGAAAGGATA+TGG + chr6_4:89794916-89794935 Msa1002980:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG + chr6_4:89795119-89795138 Msa1002980:CDS 45.0%
TTCCTTGCAGTGAAGCATGT+TGG + chr6_4:89795344-89795363 Msa1002980:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG - chr6_4:89795371-89795390 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG + chr6_4:89795374-89795393 Msa1002980:CDS 45.0%
ACTGCCGTTACTATTAGGAC+CGG - chr6_4:89795396-89795415 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG + chr6_4:89795482-89795501 Msa1002980:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG + chr6_4:89795483-89795502 Msa1002980:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG - chr6_4:89795494-89795513 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG + chr6_4:89795491-89795510 Msa1002980:intron 45.0%
TGTGAGGACACTTGAATCAC+AGG + chr6_4:89796504-89796523 Msa1002980:CDS 45.0%
GAGACAAGCAGCTACAACAA+TGG + chr6_4:89796526-89796545 Msa1002980:CDS 45.0%
TCTGGAGAACTTCCTCTAGA+TGG + chr6_4:89796577-89796596 Msa1002980:CDS 45.0%
TACAATGCAGTTAAGGAGGG+TGG + chr6_4:89796644-89796663 Msa1002980:three_prime_UTR 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG + chr6_4:89796651-89796670 Msa1002980:three_prime_UTR 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG + chr6_4:89796652-89796671 Msa1002980:three_prime_UTR 45.0%
TTCGCTAAATGCCCTTTCAG+TGG - chr6_4:89796748-89796767 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG + chr6_4:89794453-89794472 Msa1002980:CDS 50.0%
TCATTACGCGGCTAGGCTTT+CGG + chr6_4:89794460-89794479 Msa1002980:CDS 50.0%
TTGGAGGTGAATCTGCTGGA+AGG + chr6_4:89794721-89794740 Msa1002980:CDS 50.0%
GCTTACCTGTGCACAAAGCT+CGG - chr6_4:89794797-89794816 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG + chr6_4:89795104-89795123 Msa1002980:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG + chr6_4:89795122-89795141 Msa1002980:CDS 50.0%
GACCAACATGCTTCACTGCA+AGG - chr6_4:89795349-89795368 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG + chr6_4:89795364-89795383 Msa1002980:CDS 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG + chr6_4:89796650-89796669 Msa1002980:three_prime_UTR 50.0%
AGCAGTACCAGAGCACACCT+TGG + chr6_4:89794413-89794432 Msa1002980:CDS 55.0%
ACTGCATCCAAGGTGTGCTC+TGG - chr6_4:89794423-89794442 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG + chr6_4:89795350-89795369 Msa1002980:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG + chr6_4:89796655-89796674 Msa1002980:three_prime_UTR 55.0%
CAGGGAGGGGACTTCACAGA+AGG + chr6_4:89794985-89795004 Msa1002980:CDS 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG + chr6_4:89796659-89796678 Msa1002980:three_prime_UTR 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG + chr6_4:89796663-89796682 Msa1002980:three_prime_UTR 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG + chr6_4:89796664-89796683 Msa1002980:three_prime_UTR 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG + chr6_4:89796658-89796677 Msa1002980:three_prime_UTR 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG + chr6_4:89796662-89796681 Msa1002980:three_prime_UTR 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG + chr6_4:89796665-89796684 Msa1002980:three_prime_UTR 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG - chr6_4:89796358-89796377 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 89793738 89796925 89793738 ID=Msa1002980;Name=Msa1002980
chr6_4 mRNA 89793738 89796925 89793738 ID=Msa1002980-mRNA-1;Parent=Msa1002980;Name=Msa1002980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|7|322|251
chr6_4 exon 89793738 89793965 89793738 ID=Msa1002980-mRNA-1:exon:17457;Parent=Msa1002980-mRNA-1
chr6_4 exon 89794392 89794547 89794392 ID=Msa1002980-mRNA-1:exon:17458;Parent=Msa1002980-mRNA-1
chr6_4 exon 89794669 89794810 89794669 ID=Msa1002980-mRNA-1:exon:17459;Parent=Msa1002980-mRNA-1
chr6_4 exon 89794923 89795011 89794923 ID=Msa1002980-mRNA-1:exon:17460;Parent=Msa1002980-mRNA-1
chr6_4 exon 89795116 89795170 89795116 ID=Msa1002980-mRNA-1:exon:17461;Parent=Msa1002980-mRNA-1
chr6_4 exon 89795354 89795439 89795354 ID=Msa1002980-mRNA-1:exon:17462;Parent=Msa1002980-mRNA-1
chr6_4 exon 89796445 89796925 89796445 ID=Msa1002980-mRNA-1:exon:17463;Parent=Msa1002980-mRNA-1
chr6_4 five_prime_UTR 89793738 89793896 89793738 ID=Msa1002980-mRNA-1:five_prime_utr;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89793897 89793965 89793897 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89794392 89794547 89794392 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89794669 89794810 89794669 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89794923 89795011 89794923 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89795116 89795170 89795116 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89795354 89795439 89795354 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 CDS 89796445 89796603 89796445 ID=Msa1002980-mRNA-1:cds;Parent=Msa1002980-mRNA-1
chr6_4 three_prime_UTR 89796604 89796925 89796604 ID=Msa1002980-mRNA-1:three_prime_utr;Parent=Msa1002980-mRNA-1
Gene Sequence

>Msa1002980

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa1002980

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*