AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342080 MtrunA17_Chr8g0343431 93.910 312 15 3 1 312 27 334 0.0 584
Msa1342080 MtrunA17_Chr8g0343401 68.493 146 8 1 167 312 14 121 2.51e-59 186
Msa1342080 MtrunA17_Chr8g0343411 73.134 67 4 1 98 164 2 54 3.05e-23 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342080 AT1G72640.1 57.667 300 110 3 25 309 14 311 1.11e-114 334
Msa1342080 AT1G72640.2 57.239 297 115 2 25 309 14 310 1.40e-110 323
Msa1342080 AT1G72640.3 58.403 238 87 2 25 250 14 251 2.05e-86 260
Msa1342080 AT1G72640.4 58.242 182 64 2 25 194 14 195 1.41e-59 189

Find 76 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATACCATTTCCTTAATTT+TGG 0.088838 tig0005025:-13916 Msa1342080:intergenic
TAATTCACTGGTCCTGATTA+TGG 0.281024 tig0005025:-16731 Msa1342080:intergenic
TAAGACATGCAGTCAAAATA+TGG 0.328788 tig0005025:+17149 Msa1342080:three_prime_UTR
AGAGTTGCACTTGAAGCCTT+TGG 0.333886 tig0005025:+15572 Msa1342080:CDS
TGAAGTTAGGGATGCAGTTC+TGG 0.336303 tig0005025:+14609 Msa1342080:CDS
TCAAAGCAGAAGATGAAGTT+AGG 0.347098 tig0005025:+14596 Msa1342080:intron
TCTAGTGTGGGTAGCCTTCA+AGG 0.356340 tig0005025:+16507 Msa1342080:CDS
TGTAAACAAATCTCGAATAA+AGG 0.361254 tig0005025:+15532 Msa1342080:CDS
TCCAGATTGGAAAGAGTGTT+TGG 0.369080 tig0005025:+17078 Msa1342080:CDS
CTGGAGTTTGTCCCACAAAC+TGG 0.373437 tig0005025:+17019 Msa1342080:CDS
AGGAAGATGAATCTGTATTA+AGG 0.374058 tig0005025:+16689 Msa1342080:CDS
TCAGTTTATAGTGGTAAAAC+TGG 0.374312 tig0005025:+16625 Msa1342080:CDS
CAAATTCTTGATTACATTGA+AGG 0.375448 tig0005025:+13686 Msa1342080:CDS
TTCACTTCATCAACACCATT+TGG 0.402060 tig0005025:+13566 Msa1342080:CDS
GCATGGCAAACGAAAAGAAA+TGG 0.417515 tig0005025:-13638 Msa1342080:intergenic
GCCAAACACTCTTTCCAATC+TGG 0.419948 tig0005025:-17079 Msa1342080:intergenic
GTGGTCCAAAATTAAGGAAA+TGG 0.421374 tig0005025:+13911 Msa1342080:CDS
ACAAACCAACATATGAAGAT+TGG 0.433596 tig0005025:-17244 Msa1342080:intergenic
TCATATTTGAAGTGGCCAAT+GGG 0.437864 tig0005025:+17044 Msa1342080:CDS
TTTGTTTCTTCCCGCTAGAA+TGG 0.448245 tig0005025:-13472 Msa1342080:intergenic
TCTGTTGTTGAATAGAAAAG+AGG 0.454394 tig0005025:-13591 Msa1342080:intergenic
CAAATCTCGAATAAAGGCCT+TGG 0.457321 tig0005025:+15538 Msa1342080:CDS
CTTTATGTATCAAGTGCAAA+TGG 0.457396 tig0005025:+17310 Msa1342080:three_prime_UTR
CCACATGCTTTACCCCTTGA+AGG 0.458656 tig0005025:-16521 Msa1342080:intergenic
TTGCAGTTGTCAGTTTATAG+TGG 0.466226 tig0005025:+16616 Msa1342080:intron
TAGAACTTTATTAACATATG+TGG 0.467523 tig0005025:-17426 Msa1342080:intergenic
AGAGTGTTTGGCGACATTGA+TGG 0.470231 tig0005025:+17090 Msa1342080:CDS
GAATTCCTTACACCATAATC+AGG 0.473114 tig0005025:+16719 Msa1342080:CDS
CAAATATGAGTCCAGTTTGT+GGG 0.478466 tig0005025:-17030 Msa1342080:intergenic
ACAGATGGAGATAGTGAGAT+TGG 0.481708 tig0005025:+14634 Msa1342080:CDS
CTGGTCCTGATTATGGTGTA+AGG 0.485068 tig0005025:-16724 Msa1342080:intergenic
TTACAGGGTTGTGCAGCTAC+TGG 0.493049 tig0005025:+16953 Msa1342080:intron
TGGAGATAGTGAGATTGGTC+AGG 0.495077 tig0005025:+14639 Msa1342080:CDS
CTCATATTTGAAGTGGCCAA+TGG 0.498498 tig0005025:+17043 Msa1342080:CDS
TAATACAGATTCATCTTCCT+CGG 0.505980 tig0005025:-16686 Msa1342080:intergenic
GGGAAAATAAAATTCCAGAT+TGG 0.508417 tig0005025:+17065 Msa1342080:CDS
GCAGTCCAATCTTCATATGT+TGG 0.513423 tig0005025:+17239 Msa1342080:three_prime_UTR
CAAAGCAGAAGATGAAGTTA+GGG 0.519708 tig0005025:+14597 Msa1342080:intron
GAATCTGTATTAAGGAGCTC+AGG 0.521293 tig0005025:+16697 Msa1342080:CDS
CTAGTGTGGGTAGCCTTCAA+GGG 0.521406 tig0005025:+16508 Msa1342080:CDS
AAAATGAAGATACACGAACT+TGG 0.523678 tig0005025:-17283 Msa1342080:intergenic
TCAAATATGAGTCCAGTTTG+TGG 0.524055 tig0005025:-17031 Msa1342080:intergenic
AGGTGTATCTTGTAATTCAC+TGG 0.526184 tig0005025:-16743 Msa1342080:intergenic
AATAGAAAAGAGGAACCAAA+TGG 0.536283 tig0005025:-13581 Msa1342080:intergenic
TCGAATAAAGGCCTTGGTGA+AGG 0.540785 tig0005025:+15544 Msa1342080:CDS
GTTCGTATGTGTAAAAGCAC+TGG 0.556625 tig0005025:+17000 Msa1342080:CDS
CTTATGAATGTTCATTGAAG+AGG 0.559175 tig0005025:-17130 Msa1342080:intergenic
GTAAAGCCTTGCTTCCCACC+AGG 0.563520 tig0005025:-16763 Msa1342080:intergenic
GATACACCTGGTGGGAAGCA+AGG 0.563577 tig0005025:+16757 Msa1342080:CDS
GCGGGAAGAAACAAAACGGT+TGG 0.563832 tig0005025:+13480 Msa1342080:five_prime_UTR
CCAAAATTAAGGAAATGGTA+TGG 0.572471 tig0005025:+13916 Msa1342080:CDS
TACCTCAACATAATTTCCAA+AGG 0.573481 tig0005025:-15588 Msa1342080:intergenic
GGAAGAAACAAAACGGTTGG+AGG 0.574452 tig0005025:+13483 Msa1342080:five_prime_UTR
GTTATGGCAAAGTCAATGAC+AGG 0.581417 tig0005025:+15711 Msa1342080:intron
CTCCTCTCAACGCTTTCTTG+AGG 0.581697 tig0005025:-15755 Msa1342080:intergenic
ATCACCATCATCACTAGCTG+TGG 0.584131 tig0005025:-13971 Msa1342080:intergenic
GCATGTGGTCCTCTTATCAC+AGG 0.589532 tig0005025:+16536 Msa1342080:CDS
GATGCAGTTCTGGTAACAGA+TGG 0.589928 tig0005025:+14619 Msa1342080:CDS
AACTGGACTCATATTTGAAG+TGG 0.599321 tig0005025:+17036 Msa1342080:CDS
GATAGACTGTACCTTGTCAA+AGG 0.604887 tig0005025:-16785 Msa1342080:intergenic
AATGCATTATCCATTCTAGC+GGG 0.614894 tig0005025:+13462 Msa1342080:five_prime_UTR
TCTAGCGGGAAGAAACAAAA+CGG 0.621394 tig0005025:+13476 Msa1342080:five_prime_UTR
ACTTCCACAGCTAGTGATGA+TGG 0.621845 tig0005025:+13967 Msa1342080:CDS
TTCCTCAAGAAAGCGTTGAG+AGG 0.628467 tig0005025:+15753 Msa1342080:CDS
GCAAGGCTTTACCTTTGACA+AGG 0.631220 tig0005025:+16774 Msa1342080:CDS
TAGTGTGGGTAGCCTTCAAG+GGG 0.640736 tig0005025:+16509 Msa1342080:CDS
CATATTTGAAGTGGCCAATG+GGG 0.643386 tig0005025:+17045 Msa1342080:CDS
AGCCTTTGGAAATTATGTTG+AGG 0.649082 tig0005025:+15586 Msa1342080:CDS
AAATGCATTATCCATTCTAG+CGG 0.650063 tig0005025:+13461 Msa1342080:five_prime_UTR
AAGCTTTGTGAGTGAAAGTG+TGG 0.651347 tig0005025:-13537 Msa1342080:intergenic
AATGGTGTTGATGAAGTGAA+AGG 0.657210 tig0005025:-13563 Msa1342080:intergenic
CAATGCAAAGAAATTAGCCG+AGG 0.664390 tig0005025:+16669 Msa1342080:CDS
CCTTCAAGGGGTAAAGCATG+TGG 0.665023 tig0005025:+16521 Msa1342080:CDS
AATTACAAGATACACCTGGT+GGG 0.698521 tig0005025:+16749 Msa1342080:CDS
GAATTACAAGATACACCTGG+TGG 0.706658 tig0005025:+16748 Msa1342080:CDS
AGTGAATTACAAGATACACC+TGG 0.736388 tig0005025:+16745 Msa1342080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+TGG + tig0005025:13761-13780 Msa1342080:intron 0.0%
!!! TTTTTATGTTTTTCAATTTC+TGG + tig0005025:13848-13867 Msa1342080:intron 15.0%
!!! TTTTATGTTTTTCAATTTCT+GGG + tig0005025:13849-13868 Msa1342080:intron 15.0%
!!! TTGTTTTCATATACAATAAA+GGG + tig0005025:14142-14161 Msa1342080:intron 15.0%
!! ATACAATATTGAAGAATTTA+TGG + tig0005025:14342-14361 Msa1342080:intron 15.0%
!!! AATCACTATATATCATTTTA+GGG - tig0005025:14491-14510 Msa1342080:intergenic 15.0%
!! AAATGTTGGAAATTTAAAAA+AGG - tig0005025:14868-14887 Msa1342080:intergenic 15.0%
!! AAAATCAATACTTTAATGTT+CGG - tig0005025:14910-14929 Msa1342080:intergenic 15.0%
!!! ATTAAGTTAATATCTTTTAG+AGG - tig0005025:15634-15653 Msa1342080:intergenic 15.0%
!!! TGATTCTGTGTTTAATTTTT+AGG + tig0005025:13889-13908 Msa1342080:intron 20.0%
!! TTGTAAAAATAGCTTATAAC+AGG - tig0005025:14078-14097 Msa1342080:intergenic 20.0%
!!! GTTGTTTTCATATACAATAA+AGG + tig0005025:14141-14160 Msa1342080:intron 20.0%
!!! GAATCACTATATATCATTTT+AGG - tig0005025:14492-14511 Msa1342080:intergenic 20.0%
!! ACAAATGCTTTATGTTTATA+TGG + tig0005025:14512-14531 Msa1342080:intron 20.0%
!! CAAATGCTTTATGTTTATAT+GGG + tig0005025:14513-14532 Msa1342080:intron 20.0%
!! AAATGCTTTATGTTTATATG+GGG + tig0005025:14514-14533 Msa1342080:intron 20.0%
!!! TTACCAATAGTGATTTTATT+TGG + tig0005025:14564-14583 Msa1342080:intron 20.0%
!! TTATTATATGGGATATATCA+AGG - tig0005025:14753-14772 Msa1342080:intergenic 20.0%
!! CCATTTAACTGTTATTATAT+GGG - tig0005025:14764-14783 Msa1342080:intergenic 20.0%
!! ACCATTTAACTGTTATTATA+TGG - tig0005025:14765-14784 Msa1342080:intergenic 20.0%
!! TAATCTATTCAATCAAATGT+TGG - tig0005025:14882-14901 Msa1342080:intergenic 20.0%
!!! AGCATAAAAGTTTTTCATAT+AGG + tig0005025:15056-15075 Msa1342080:intron 20.0%
!!! AATTATCAGATTCTAGAATA+TGG - tig0005025:15446-15465 Msa1342080:intergenic 20.0%
!! AAAGCTAAATTTCATTGAAA+AGG - tig0005025:15860-15879 Msa1342080:intergenic 20.0%
!! CAACAAAGAAAAATGAATAT+AGG - tig0005025:16065-16084 Msa1342080:intergenic 20.0%
!! ATGAAATCAAAGCTTATATT+TGG - tig0005025:16120-16139 Msa1342080:intergenic 20.0%
!!! TGACTTTTTTCATTTTTCTA+TGG - tig0005025:16159-16178 Msa1342080:intergenic 20.0%
!! ATAGAAAAATGAAAAAAGTC+AGG + tig0005025:16158-16177 Msa1342080:intron 20.0%
!!! TCAAACAATTTTCTGAAAAA+TGG + tig0005025:16448-16467 Msa1342080:intron 20.0%
!! ACTTTATTAAAACAGAACAA+AGG - tig0005025:16597-16616 Msa1342080:intergenic 20.0%
!! ATATTTGTGTTTACTATTAC+AGG + tig0005025:16937-16956 Msa1342080:intron 20.0%
!! TATTTGTGTTTACTATTACA+GGG + tig0005025:16938-16957 Msa1342080:intron 20.0%
!!! AAATCATGAGTTTTTTGAAA+TGG - tig0005025:17344-17363 Msa1342080:intergenic 20.0%
!! TAGAACTTTATTAACATATG+TGG - tig0005025:17429-17448 Msa1342080:intergenic 20.0%
! CAAATTCTTGATTACATTGA+AGG + tig0005025:13686-13705 Msa1342080:CDS 25.0%
!!! TTCTGTGTTTAATTTTTAGG+TGG + tig0005025:13892-13911 Msa1342080:intron 25.0%
! TTAAGCTGTTTATCCAAAAA+GGG - tig0005025:14018-14037 Msa1342080:intergenic 25.0%
! ATTAAGCTGTTTATCCAAAA+AGG - tig0005025:14019-14038 Msa1342080:intergenic 25.0%
! AAGCCAAATAAAATCACTAT+TGG - tig0005025:14570-14589 Msa1342080:intergenic 25.0%
!! AATGAAAAAGGGTGTAAAAA+AGG - tig0005025:14673-14692 Msa1342080:intergenic 25.0%
! CCCATATAATAACAGTTAAA+TGG + tig0005025:14761-14780 Msa1342080:intron 25.0%
!!! AAATTTATTAAGGCCTTGTT+TGG + tig0005025:15008-15027 Msa1342080:intron 25.0%
!! TTAAGTTGTTTATCCAAACA+AGG - tig0005025:15024-15043 Msa1342080:intergenic 25.0%
! TATTTATAAGCTCTTCCAAA+TGG + tig0005025:15219-15238 Msa1342080:intron 25.0%
! TAATTTCTTGTGATACCATT+TGG - tig0005025:15237-15256 Msa1342080:intergenic 25.0%
!! CTGACTTTTATTGTGTTTTT+TGG + tig0005025:15480-15499 Msa1342080:intron 25.0%
! TGTAAACAAATCTCGAATAA+AGG + tig0005025:15532-15551 Msa1342080:CDS 25.0%
!! TTATTGATTACACGTTGTTA+TGG + tig0005025:15695-15714 Msa1342080:intron 25.0%
!!! TGAAATTTAGCTTTTTGTCA+AGG + tig0005025:15866-15885 Msa1342080:intron 25.0%
! TCCTTTCTGTTAAGTATTTA+TGG + tig0005025:16020-16039 Msa1342080:intron 25.0%
! TCCATAAATACTTAACAGAA+AGG - tig0005025:16024-16043 Msa1342080:intergenic 25.0%
! AATCAAAGCTTATATTTGGA+AGG - tig0005025:16116-16135 Msa1342080:intergenic 25.0%
! CATTAAAAGAAATGAACTCA+GGG - tig0005025:16377-16396 Msa1342080:intergenic 25.0%
! TCATTAAAAGAAATGAACTC+AGG - tig0005025:16378-16397 Msa1342080:intergenic 25.0%
!! CAATAATTTTGTTCAGATGA+AGG - tig0005025:17380-17399 Msa1342080:intergenic 25.0%
AAATGCATTATCCATTCTAG+CGG + tig0005025:13461-13480 Msa1342080:five_prime_UTR 30.0%
AATAGAAAAGAGGAACCAAA+TGG - tig0005025:13584-13603 Msa1342080:intergenic 30.0%
TCTGTTGTTGAATAGAAAAG+AGG - tig0005025:13594-13613 Msa1342080:intergenic 30.0%
TGCCATGCTAAGAAAAAAAT+CGG + tig0005025:13653-13672 Msa1342080:CDS 30.0%
!! TTACATTGAAGGTACTTACT+TGG + tig0005025:13697-13716 Msa1342080:intron 30.0%
!! TTTTAGGTGGTCCAAAATTA+AGG + tig0005025:13905-13924 Msa1342080:intron 30.0%
! CCATACCATTTCCTTAATTT+TGG - tig0005025:13919-13938 Msa1342080:intergenic 30.0%
CCAAAATTAAGGAAATGGTA+TGG + tig0005025:13916-13935 Msa1342080:CDS 30.0%
AAAAAGGGTCTTAATTTACC+TGG - tig0005025:14003-14022 Msa1342080:intergenic 30.0%
! AGGTAAATTAAGACCCTTTT+TGG + tig0005025:14002-14021 Msa1342080:intron 30.0%
ACAGGCACTTATAAAATAAG+CGG - tig0005025:14060-14079 Msa1342080:intergenic 30.0%
AACAACTCATATTGTAACCT+TGG - tig0005025:14317-14336 Msa1342080:intergenic 30.0%
!! TTGTTGAGAAGTTTTAACAG+TGG + tig0005025:14715-14734 Msa1342080:intron 30.0%
AAGCTATCTTGAAAAGCTTA+TGG + tig0005025:15157-15176 Msa1342080:intron 30.0%
TCACATAAGTCAATCAAAAG+CGG + tig0005025:15272-15291 Msa1342080:intron 30.0%
AACCCAATAACTGACATTTA+GGG - tig0005025:15298-15317 Msa1342080:intergenic 30.0%
!! TATCAGATTCTAGAATATGG+AGG - tig0005025:15443-15462 Msa1342080:intergenic 30.0%
TACCTCAACATAATTTCCAA+AGG - tig0005025:15591-15610 Msa1342080:intergenic 30.0%
TTTGGAAATTATGTTGAGGT+AGG + tig0005025:15590-15609 Msa1342080:intron 30.0%
GGAAGGAACATCAAAATATA+AGG - tig0005025:16099-16118 Msa1342080:intergenic 30.0%
TACATGGAGAGTTAATCTTT+CGG + tig0005025:16221-16240 Msa1342080:intron 30.0%
CGAAGTTAAAATTCTGGTAA+AGG - tig0005025:16336-16355 Msa1342080:intergenic 30.0%
AAGGATCGAAGTTAAAATTC+TGG - tig0005025:16342-16361 Msa1342080:intergenic 30.0%
!! GATTGATTTTACTCTTTTCC+AGG + tig0005025:16473-16492 Msa1342080:intron 30.0%
!! AAAAAAGTACCTGTGATAAG+AGG - tig0005025:16548-16567 Msa1342080:intergenic 30.0%
TCAGTTTATAGTGGTAAAAC+TGG + tig0005025:16625-16644 Msa1342080:CDS 30.0%
TAATACAGATTCATCTTCCT+CGG - tig0005025:16689-16708 Msa1342080:intergenic 30.0%
AGGAAGATGAATCTGTATTA+AGG + tig0005025:16689-16708 Msa1342080:CDS 30.0%
!! CTTTACGAGCTGATTTTATT+AGG - tig0005025:16889-16908 Msa1342080:intergenic 30.0%
!!! TGGAATTTTATTTTCCCCAT+TGG - tig0005025:17062-17081 Msa1342080:intergenic 30.0%
GGGAAAATAAAATTCCAGAT+TGG + tig0005025:17065-17084 Msa1342080:CDS 30.0%
CTTATGAATGTTCATTGAAG+AGG - tig0005025:17133-17152 Msa1342080:intergenic 30.0%
TAAGACATGCAGTCAAAATA+TGG + tig0005025:17149-17168 Msa1342080:three_prime_UTR 30.0%
ACAAACCAACATATGAAGAT+TGG - tig0005025:17247-17266 Msa1342080:intergenic 30.0%
AAAATGAAGATACACGAACT+TGG - tig0005025:17286-17305 Msa1342080:intergenic 30.0%
CTTTATGTATCAAGTGCAAA+TGG + tig0005025:17310-17329 Msa1342080:three_prime_UTR 30.0%
AATGCATTATCCATTCTAGC+GGG + tig0005025:13462-13481 Msa1342080:five_prime_UTR 35.0%
!! AATGGTGTTGATGAAGTGAA+AGG - tig0005025:13566-13585 Msa1342080:intergenic 35.0%
TTCACTTCATCAACACCATT+TGG + tig0005025:13566-13585 Msa1342080:CDS 35.0%
GCCATGCTAAGAAAAAAATC+GGG + tig0005025:13654-13673 Msa1342080:CDS 35.0%
!!! ACCCGATTTTTTTCTTAGCA+TGG - tig0005025:13658-13677 Msa1342080:intergenic 35.0%
GTGGTCCAAAATTAAGGAAA+TGG + tig0005025:13911-13930 Msa1342080:CDS 35.0%
!!! TGGAAGTACCATCTTTTTCA+AGG - tig0005025:13954-13973 Msa1342080:intergenic 35.0%
ATATACAATAAAGGGCAACC+CGG + tig0005025:14150-14169 Msa1342080:intron 35.0%
!!! GCTCATTTTAGTTCATCTAC+TGG - tig0005025:14455-14474 Msa1342080:intergenic 35.0%
TCAAAGCAGAAGATGAAGTT+AGG + tig0005025:14596-14615 Msa1342080:intron 35.0%
CAAAGCAGAAGATGAAGTTA+GGG + tig0005025:14597-14616 Msa1342080:intron 35.0%
GTGAGGCATGTAATGAAAAA+GGG - tig0005025:14684-14703 Msa1342080:intergenic 35.0%
AGTGAGGCATGTAATGAAAA+AGG - tig0005025:14685-14704 Msa1342080:intergenic 35.0%
CAACAACAACTAATCAAGTG+AGG - tig0005025:14701-14720 Msa1342080:intergenic 35.0%
ATTGCAATGTGAACGTGATT+AGG - tig0005025:14797-14816 Msa1342080:intergenic 35.0%
! AACATAACTTCCTTGATTCG+TGG + tig0005025:14823-14842 Msa1342080:intron 35.0%
CAACCCAATAACTGACATTT+AGG - tig0005025:15299-15318 Msa1342080:intergenic 35.0%
CTAAATGTCAGTTATTGGGT+TGG + tig0005025:15297-15316 Msa1342080:intron 35.0%
AAATTGGATGGTCTAGACTA+TGG - tig0005025:15327-15346 Msa1342080:intergenic 35.0%
TAGACCATCCAATTTGATCT+TGG + tig0005025:15332-15351 Msa1342080:intron 35.0%
CTATCCAAGATCAAATTGGA+TGG - tig0005025:15339-15358 Msa1342080:intergenic 35.0%
TCGACTATCCAAGATCAAAT+TGG - tig0005025:15343-15362 Msa1342080:intergenic 35.0%
!!! TGTTTTTTGGCTTATGCAGA+TGG + tig0005025:15493-15512 Msa1342080:intron 35.0%
! AACTCTTTTATCCTTCACCA+AGG - tig0005025:15558-15577 Msa1342080:intergenic 35.0%
! AGCCTTTGGAAATTATGTTG+AGG + tig0005025:15586-15605 Msa1342080:CDS 35.0%
AACAAACATGTCTAAAGACG+AGG - tig0005025:15823-15842 Msa1342080:intergenic 35.0%
! GACTCTTATTAGCTTATGAG+AGG + tig0005025:16180-16199 Msa1342080:intron 35.0%
CTTATGAGAGGAAGACATTA+TGG + tig0005025:16192-16211 Msa1342080:intron 35.0%
AGAAATGAACTCAGGGTTAA+AGG - tig0005025:16370-16389 Msa1342080:intergenic 35.0%
! TGATTTTACTCTTTTCCAGG+AGG + tig0005025:16476-16495 Msa1342080:intron 35.0%
! GATTTTACTCTTTTCCAGGA+GGG + tig0005025:16477-16496 Msa1342080:intron 35.0%
!!! GAGGGTTTTATTTCTAGTGT+GGG + tig0005025:16495-16514 Msa1342080:CDS 35.0%
TTATCTTTGTGGTGGTACAA+GGG - tig0005025:16574-16593 Msa1342080:intergenic 35.0%
AACAAAGGTTATCTTTGTGG+TGG - tig0005025:16582-16601 Msa1342080:intergenic 35.0%
CAGAACAAAGGTTATCTTTG+TGG - tig0005025:16585-16604 Msa1342080:intergenic 35.0%
TTGCAGTTGTCAGTTTATAG+TGG + tig0005025:16616-16635 Msa1342080:intron 35.0%
GAATTCCTTACACCATAATC+AGG + tig0005025:16719-16738 Msa1342080:CDS 35.0%
TAATTCACTGGTCCTGATTA+TGG - tig0005025:16734-16753 Msa1342080:intergenic 35.0%
AGGTGTATCTTGTAATTCAC+TGG - tig0005025:16746-16765 Msa1342080:intergenic 35.0%
AGTGAATTACAAGATACACC+TGG + tig0005025:16745-16764 Msa1342080:CDS 35.0%
AATTACAAGATACACCTGGT+GGG + tig0005025:16749-16768 Msa1342080:CDS 35.0%
TTATTAGGACGAGTTAGACT+TGG - tig0005025:16874-16893 Msa1342080:intergenic 35.0%
CAAATATGAGTCCAGTTTGT+GGG - tig0005025:17033-17052 Msa1342080:intergenic 35.0%
TCAAATATGAGTCCAGTTTG+TGG - tig0005025:17034-17053 Msa1342080:intergenic 35.0%
AACTGGACTCATATTTGAAG+TGG + tig0005025:17036-17055 Msa1342080:CDS 35.0%
! TCATATTTGAAGTGGCCAAT+GGG + tig0005025:17044-17063 Msa1342080:CDS 35.0%
! TTTGTTTCTTCCCGCTAGAA+TGG - tig0005025:13475-13494 Msa1342080:intergenic 40.0%
TCTAGCGGGAAGAAACAAAA+CGG + tig0005025:13476-13495 Msa1342080:five_prime_UTR 40.0%
! GCACAAACCAAGACCATTTT+TGG - tig0005025:13512-13531 Msa1342080:intergenic 40.0%
! AAGCTTTGTGAGTGAAAGTG+TGG - tig0005025:13540-13559 Msa1342080:intergenic 40.0%
GCATGGCAAACGAAAAGAAA+TGG - tig0005025:13641-13660 Msa1342080:intergenic 40.0%
!!! CCATCTTTTTCAAGGAGATC+AGG - tig0005025:13946-13965 Msa1342080:intergenic 40.0%
CCTGATCTCCTTGAAAAAGA+TGG + tig0005025:13943-13962 Msa1342080:CDS 40.0%
!! GATGATGGTGATGATTTTCC+AGG + tig0005025:13982-14001 Msa1342080:CDS 40.0%
TGGAAACAGAAAACAGGGTA+AGG - tig0005025:14242-14261 Msa1342080:intergenic 40.0%
! TTACCCTGTTTTCTGTTTCC+AGG + tig0005025:14241-14260 Msa1342080:intron 40.0%
AGTCCTGGAAACAGAAAACA+GGG - tig0005025:14247-14266 Msa1342080:intergenic 40.0%
AAGTCCTGGAAACAGAAAAC+AGG - tig0005025:14248-14267 Msa1342080:intergenic 40.0%
TAAAGTTGTTGCCATGTGAC+TGG - tig0005025:14285-14304 Msa1342080:intergenic 40.0%
TCACATGGCAACAACTTTAC+CGG + tig0005025:14286-14305 Msa1342080:intron 40.0%
ACAGATGGAGATAGTGAGAT+TGG + tig0005025:14634-14653 Msa1342080:CDS 40.0%
GGCCCTAAATGTCAGTTATT+GGG + tig0005025:15293-15312 Msa1342080:intron 40.0%
GTCGACAATCTGATTCCTTT+AGG + tig0005025:15358-15377 Msa1342080:intron 40.0%
CAAATCTCGAATAAAGGCCT+TGG + tig0005025:15538-15557 Msa1342080:CDS 40.0%
GTTATGGCAAAGTCAATGAC+AGG + tig0005025:15711-15730 Msa1342080:intron 40.0%
GGCAAGTTATGCATACGTTT+GGG - tig0005025:15797-15816 Msa1342080:intergenic 40.0%
TGGCAAGTTATGCATACGTT+TGG - tig0005025:15798-15817 Msa1342080:intergenic 40.0%
! TAGCTTTTTGTCAAGGCTCA+TGG + tig0005025:15873-15892 Msa1342080:intron 40.0%
GACATTATGGCGACTATACA+TGG + tig0005025:16205-16224 Msa1342080:intron 40.0%
CACTAGAAATAAAACCCTCC+TGG - tig0005025:16494-16513 Msa1342080:intergenic 40.0%
!!! GGAGGGTTTTATTTCTAGTG+TGG + tig0005025:16494-16513 Msa1342080:intron 40.0%
GTTATCTTTGTGGTGGTACA+AGG - tig0005025:16575-16594 Msa1342080:intergenic 40.0%
CAATGCAAAGAAATTAGCCG+AGG + tig0005025:16669-16688 Msa1342080:CDS 40.0%
GAATCTGTATTAAGGAGCTC+AGG + tig0005025:16697-16716 Msa1342080:CDS 40.0%
GAATTACAAGATACACCTGG+TGG + tig0005025:16748-16767 Msa1342080:CDS 40.0%
GATAGACTGTACCTTGTCAA+AGG - tig0005025:16788-16807 Msa1342080:intergenic 40.0%
! GTTCGTATGTGTAAAAGCAC+TGG + tig0005025:17000-17019 Msa1342080:CDS 40.0%
! CTCATATTTGAAGTGGCCAA+TGG + tig0005025:17043-17062 Msa1342080:CDS 40.0%
! CATATTTGAAGTGGCCAATG+GGG + tig0005025:17045-17064 Msa1342080:CDS 40.0%
!! TCCAGATTGGAAAGAGTGTT+TGG + tig0005025:17078-17097 Msa1342080:CDS 40.0%
GCAGTCCAATCTTCATATGT+TGG + tig0005025:17239-17258 Msa1342080:three_prime_UTR 40.0%
GGAAGAAACAAAACGGTTGG+AGG + tig0005025:13483-13502 Msa1342080:five_prime_UTR 45.0%
GAGGAGACCAAAAATGGTCT+TGG + tig0005025:13502-13521 Msa1342080:exon 45.0%
ACTTCCACAGCTAGTGATGA+TGG + tig0005025:13967-13986 Msa1342080:CDS 45.0%
ATCACCATCATCACTAGCTG+TGG - tig0005025:13974-13993 Msa1342080:intergenic 45.0%
ACTAAAGCTCCCGCATACAT+AGG + tig0005025:14176-14195 Msa1342080:intron 45.0%
CTAAAGCTCCCGCATACATA+GGG + tig0005025:14177-14196 Msa1342080:intron 45.0%
TATTGTAACCTTGGCGCAAC+CGG - tig0005025:14308-14327 Msa1342080:intergenic 45.0%
TGAAGTTAGGGATGCAGTTC+TGG + tig0005025:14609-14628 Msa1342080:CDS 45.0%
! GATGCAGTTCTGGTAACAGA+TGG + tig0005025:14619-14638 Msa1342080:CDS 45.0%
! TGGAGATAGTGAGATTGGTC+AGG + tig0005025:14639-14658 Msa1342080:CDS 45.0%
CGGCCCTAAATGTCAGTTAT+TGG + tig0005025:15292-15311 Msa1342080:intron 45.0%
TCAGACAATGCAACGCCTAA+AGG - tig0005025:15376-15395 Msa1342080:intergenic 45.0%
TCGAATAAAGGCCTTGGTGA+AGG + tig0005025:15544-15563 Msa1342080:CDS 45.0%
AGAGTTGCACTTGAAGCCTT+TGG + tig0005025:15572-15591 Msa1342080:CDS 45.0%
!! TTCCTCAAGAAAGCGTTGAG+AGG + tig0005025:15753-15772 Msa1342080:CDS 45.0%
ACATGTCTAAAGACGAGGCA+TGG - tig0005025:15818-15837 Msa1342080:intergenic 45.0%
CTCAGGGTTAAAGGAGTTGA+AGG - tig0005025:16361-16380 Msa1342080:intergenic 45.0%
CTGGTCCTGATTATGGTGTA+AGG - tig0005025:16727-16746 Msa1342080:intergenic 45.0%
GCAAGGCTTTACCTTTGACA+AGG + tig0005025:16774-16793 Msa1342080:CDS 45.0%
GCCAAACACTCTTTCCAATC+TGG - tig0005025:17082-17101 Msa1342080:intergenic 45.0%
! AGAGTGTTTGGCGACATTGA+TGG + tig0005025:17090-17109 Msa1342080:CDS 45.0%
!! TTATAAAGATAAATTTATTA+AGG + tig0005025:14998-15017 Msa1342080:intron 5.0%
GCGGGAAGAAACAAAACGGT+TGG + tig0005025:13480-13499 Msa1342080:five_prime_UTR 50.0%
CGGTTGGAGGAGACCAAAAA+TGG + tig0005025:13496-13515 Msa1342080:exon 50.0%
TTCCCAGACCCTATGTATGC+GGG - tig0005025:14188-14207 Msa1342080:intergenic 50.0%
CTTCCCAGACCCTATGTATG+CGG - tig0005025:14189-14208 Msa1342080:intergenic 50.0%
GCATACATAGGGTCTGGGAA+GGG + tig0005025:14188-14207 Msa1342080:intron 50.0%
CATACATAGGGTCTGGGAAG+GGG + tig0005025:14189-14208 Msa1342080:intron 50.0%
TGGGAAGGGGTCTCATCATT+TGG + tig0005025:14202-14221 Msa1342080:intron 50.0%
GTTGTTGCCATGTGACTGGA+AGG - tig0005025:14281-14300 Msa1342080:intergenic 50.0%
GTGATCGAGACCACGAATCA+AGG - tig0005025:14836-14855 Msa1342080:intergenic 50.0%
CTCCTCTCAACGCTTTCTTG+AGG - tig0005025:15758-15777 Msa1342080:intergenic 50.0%
TCTAGTGTGGGTAGCCTTCA+AGG + tig0005025:16507-16526 Msa1342080:CDS 50.0%
CTAGTGTGGGTAGCCTTCAA+GGG + tig0005025:16508-16527 Msa1342080:CDS 50.0%
TAGTGTGGGTAGCCTTCAAG+GGG + tig0005025:16509-16528 Msa1342080:CDS 50.0%
CCACATGCTTTACCCCTTGA+AGG - tig0005025:16524-16543 Msa1342080:intergenic 50.0%
CCTTCAAGGGGTAAAGCATG+TGG + tig0005025:16521-16540 Msa1342080:CDS 50.0%
GCATGTGGTCCTCTTATCAC+AGG + tig0005025:16536-16555 Msa1342080:CDS 50.0%
TTACAGGGTTGTGCAGCTAC+TGG + tig0005025:16953-16972 Msa1342080:intron 50.0%
CTGGAGTTTGTCCCACAAAC+TGG + tig0005025:17019-17038 Msa1342080:CDS 50.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - tig0005025:14172-14191 Msa1342080:intergenic 55.0%
CTCCCGCATACATAGGGTCT+GGG + tig0005025:14183-14202 Msa1342080:intron 55.0%
CGCATACATAGGGTCTGGGA+AGG + tig0005025:14187-14206 Msa1342080:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - tig0005025:14262-14281 Msa1342080:intergenic 55.0%
CCATGTGACTGGAAGGTCAC+GGG - tig0005025:14274-14293 Msa1342080:intergenic 55.0%
GCCATGTGACTGGAAGGTCA+CGG - tig0005025:14275-14294 Msa1342080:intergenic 55.0%
! CAACTTTACCGGTTGCGCCA+AGG + tig0005025:14297-14316 Msa1342080:intron 55.0%
GATACACCTGGTGGGAAGCA+AGG + tig0005025:16757-16776 Msa1342080:CDS 55.0%
GTAAAGCCTTGCTTCCCACC+AGG - tig0005025:16766-16785 Msa1342080:intergenic 55.0%
! TGCGGGAGCTTTAGTGCACC+GGG - tig0005025:14171-14190 Msa1342080:intergenic 60.0%
GCTCCCGCATACATAGGGTC+TGG + tig0005025:14182-14201 Msa1342080:intron 60.0%
CCCGTGACCTTCCAGTCACA+TGG + tig0005025:14271-14290 Msa1342080:intron 60.0%
Chromosome Type Strat End Strand Name
tig0005025 gene 13460 17455 13460 ID=Msa1342080;Name=Msa1342080
tig0005025 mRNA 13460 17455 13460 ID=Msa1342080-mRNA-1;Parent=Msa1342080;Name=Msa1342080-mRNA-1;_AED=0.19;_eAED=0.19;_QI=55|0.85|0.87|1|1|1|8|314|312
tig0005025 exon 13460 13707 13460 ID=Msa1342080-mRNA-1:exon:3448;Parent=Msa1342080-mRNA-1
tig0005025 exon 13911 14003 13911 ID=Msa1342080-mRNA-1:exon:3449;Parent=Msa1342080-mRNA-1
tig0005025 exon 14602 14660 14602 ID=Msa1342080-mRNA-1:exon:3450;Parent=Msa1342080-mRNA-1
tig0005025 exon 15512 15607 15512 ID=Msa1342080-mRNA-1:exon:3451;Parent=Msa1342080-mRNA-1
tig0005025 exon 15723 15800 15723 ID=Msa1342080-mRNA-1:exon:3452;Parent=Msa1342080-mRNA-1
tig0005025 exon 16495 16557 16495 ID=Msa1342080-mRNA-1:exon:3453;Parent=Msa1342080-mRNA-1
tig0005025 exon 16622 16795 16622 ID=Msa1342080-mRNA-1:exon:3454;Parent=Msa1342080-mRNA-1
tig0005025 exon 16959 17455 16959 ID=Msa1342080-mRNA-1:exon:3455;Parent=Msa1342080-mRNA-1
tig0005025 five_prime_UTR 13460 13514 13460 ID=Msa1342080-mRNA-1:five_prime_utr;Parent=Msa1342080-mRNA-1
tig0005025 CDS 13515 13707 13515 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 13911 14003 13911 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 14602 14660 14602 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 15512 15607 15512 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 15723 15800 15723 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 16495 16557 16495 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 16622 16795 16622 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 CDS 16959 17141 16959 ID=Msa1342080-mRNA-1:cds;Parent=Msa1342080-mRNA-1
tig0005025 three_prime_UTR 17142 17455 17142 ID=Msa1342080-mRNA-1:three_prime_utr;Parent=Msa1342080-mRNA-1
Gene Sequence

>Msa1342080

ATGGTCTTGGTTTGTGCTTCTTCCACACTTTCACTCACAAAGCTTGTTCCTTTCACTTCATCAACACCATTTGGTTCCTCTTTTCTATTCAACAACAGAAACACTAATGTTTCTGTTGCTGTTCCATTTCTTTTCGTTTGCCATGCTAAGAAAAAAATCGGGTTTTTTGATCAAATTCTTGATTACATTGAAGGTGGTCCAAAATTAAGGAAATGGTATGGTGCACCTGATCTCCTTGAAAAAGATGGTACTTCCACAGCTAGTGATGATGGTGATGATTTTCCAGCAGAAGATGAAGTTAGGGATGCAGTTCTGGTAACAGATGGAGATAGTGAGATTGGTCAGATGGTGATATTGTCATTGATTGTAAACAAATCTCGAATAAAGGCCTTGGTGAAGGATAAAAGAGTTGCACTTGAAGCCTTTGGAAATTATGTTGAGTCAATGACAGGAGACACAAGCGACAATCGATTCCTCAAGAAAGCGTTGAGAGGAGTTCGCACAGTTATATGCCCAAACGAGGGTTTTATTTCTAGTGTGGGTAGCCTTCAAGGGGTAAAGCATGTGGTCCTCTTATCACAGTTGTCAGTTTATAGTGGTAAAACTGGCATTGAATCTATGATGAAAAACAATGCAAAGAAATTAGCCGAGGAAGATGAATCTGTATTAAGGAGCTCAGGAATTCCTTACACCATAATCAGGACCAGTGAATTACAAGATACACCTGGTGGGAAGCAAGGCTTTACCTTTGACAAGGGTTGTGCAGCTACTGGAAGTATTAGCAAAGAAGATGTCGCGTTCGTATGTGTAAAAGCACTGGAGTTTGTCCCACAAACTGGACTCATATTTGAAGTGGCCAATGGGGAAAATAAAATTCCAGATTGGAAAGAGTGTTTGGCGACATTGATGGAGAAATCAAGTCAACAACCTCTTCAATGA

Protein sequence

>Msa1342080

MVLVCASSTLSLTKLVPFTSSTPFGSSFLFNNRNTNVSVAVPFLFVCHAKKKIGFFDQILDYIEGGPKLRKWYGAPDLLEKDGTSTASDDGDDFPAEDEVRDAVLVTDGDSEIGQMVILSLIVNKSRIKALVKDKRVALEAFGNYVESMTGDTSDNRFLKKALRGVRTVICPNEGFISSVGSLQGVKHVVLLSQLSVYSGKTGIESMMKNNAKKLAEEDESVLRSSGIPYTIIRTSELQDTPGGKQGFTFDKGCAATGSISKEDVAFVCVKALEFVPQTGLIFEVANGENKIPDWKECLATLMEKSSQQPLQ*