AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449680 MtrunA17_Chr1g0193711 96.813 251 8 0 1 251 1 251 0.0 503
Msa1449680 MtrunA17_Chr7g0270991 69.650 257 71 5 1 251 6 261 3.03e-118 338
Msa1449680 MtrunA17_Chr1g0213971 64.677 201 63 3 52 249 48 243 2.28e-88 262
Msa1449680 MtrunA17_Chr3g0104751 65.027 183 55 2 74 249 23 203 8.57e-78 233
Msa1449680 MtrunA17_Chr3g0113441 63.842 177 54 3 78 247 58 231 1.11e-72 221
Msa1449680 MtrunA17_Chr7g0274841 67.808 146 40 1 86 224 5 150 5.02e-69 210
Msa1449680 MtrunA17_Chr4g0038431 65.101 149 45 1 83 224 2 150 1.10e-68 209
Msa1449680 MtrunA17_Chr3g0145501 66.438 146 42 1 86 224 13 158 4.23e-67 206
Msa1449680 MtrunA17_Chr8g0353571 58.084 167 63 3 87 247 20 185 3.88e-62 193
Msa1449680 MtrunA17_Chr7g0260441 59.763 169 58 2 87 247 9 175 2.42e-61 204
Msa1449680 MtrunA17_Chr4g0045321 56.977 172 65 2 85 248 4 174 2.05e-60 194
Msa1449680 MtrunA17_Chr8g0374621 57.647 170 63 2 86 247 5 173 3.07e-60 194
Msa1449680 MtrunA17_Chr4g0037281 52.332 193 79 4 68 248 25 216 3.88e-59 187
Msa1449680 MtrunA17_Chr1g0149061 46.409 181 86 3 79 251 1 178 1.34e-41 151
Msa1449680 MtrunA17_Chr2g0321111 43.850 187 98 6 58 243 431 611 1.02e-40 147
Msa1449680 MtrunA17_Chr3g0138061 47.399 173 81 2 87 251 12 182 2.01e-40 148
Msa1449680 MtrunA17_Chr7g0266721 49.664 149 69 5 97 244 17 160 1.02e-39 135
Msa1449680 MtrunA17_Chr8g0351571 50.345 145 64 5 99 241 10 148 6.83e-33 117
Msa1449680 MtrunA17_Chr5g0401141 47.222 144 70 5 99 241 354 492 2.10e-29 115
Msa1449680 MtrunA17_Chr3g0122871 62.712 59 22 0 170 228 55 113 4.11e-23 90.9
Msa1449680 MtrunA17_Chr2g0288371 44.872 156 74 8 92 242 15 163 1.29e-21 93.2
Msa1449680 MtrunA17_Chr6g0484281 37.500 168 83 9 97 250 8 167 2.03e-16 78.2
Msa1449680 MtrunA17_Chr8g0357591 36.905 168 84 9 97 250 8 167 2.83e-15 75.1
Msa1449680 MtrunA17_Chr2g0305071 27.094 203 107 8 71 234 44 244 1.59e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449680 AT3G62030.3 62.121 264 80 7 1 250 1 258 7.44e-106 307
Msa1449680 AT3G62030.1 61.887 265 80 7 1 250 1 259 1.07e-105 306
Msa1449680 AT3G62030.2 70.370 216 55 4 42 251 101 313 1.04e-104 306
Msa1449680 AT5G13120.2 64.615 195 61 3 62 249 59 252 6.93e-87 259
Msa1449680 AT5G13120.1 64.615 195 61 3 62 249 63 256 8.72e-87 258
Msa1449680 AT2G29960.1 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1449680 AT2G29960.3 65.405 185 50 3 77 249 19 201 7.39e-77 231
Msa1449680 AT5G58710.1 66.286 175 50 2 82 249 32 204 5.69e-76 229
Msa1449680 AT3G55920.1 58.462 195 71 3 62 249 37 228 1.04e-71 219
Msa1449680 AT2G21130.1 62.722 169 54 2 86 247 6 172 2.11e-71 216
Msa1449680 AT3G56070.1 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1449680 AT3G56070.2 62.722 169 54 2 86 247 5 171 5.89e-70 213
Msa1449680 AT4G38740.1 60.947 169 57 2 86 247 5 171 2.96e-69 211
Msa1449680 AT2G16600.1 66.438 146 42 1 86 224 6 151 1.36e-68 209
Msa1449680 AT2G29960.2 60.428 187 50 4 75 249 17 191 8.57e-68 208
Msa1449680 AT4G34870.1 57.396 169 63 2 86 247 5 171 1.34e-62 194
Msa1449680 AT3G63400.2 57.955 176 64 2 79 246 1 174 2.07e-61 198
Msa1449680 AT2G38730.1 57.485 167 64 3 87 247 34 199 4.71e-61 191
Msa1449680 AT4G34960.1 55.682 176 70 2 82 250 44 218 1.73e-60 190
Msa1449680 AT3G63400.3 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1449680 AT3G63400.4 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1449680 AT3G63400.1 57.955 176 64 2 79 246 1 174 8.03e-60 198
Msa1449680 AT2G15790.1 58.721 172 62 2 85 248 4 174 1.06e-59 193
Msa1449680 AT2G16600.2 61.871 139 38 1 86 224 6 129 2.57e-58 182
Msa1449680 AT4G34960.2 60.156 128 44 1 82 202 44 171 1.30e-47 155
Msa1449680 AT3G44600.1 44.920 187 96 6 58 243 445 625 3.46e-41 149
Msa1449680 AT2G36130.1 48.993 149 70 5 97 244 17 160 3.49e-39 134
Msa1449680 AT3G22920.1 43.605 172 80 5 85 247 4 167 2.11e-35 126
Msa1449680 AT4G32420.1 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1449680 AT4G32420.5 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1449680 AT4G32420.3 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1449680 AT4G32420.6 44.318 176 88 2 79 246 1 174 3.72e-35 133
Msa1449680 AT4G32420.4 47.403 154 73 1 79 224 1 154 4.89e-34 130
Msa1449680 AT1G01940.1 51.515 132 57 4 99 228 10 136 1.36e-32 117
Msa1449680 AT5G67530.1 44.898 147 75 5 99 244 353 494 1.74e-29 116
Msa1449680 AT4G33060.1 48.800 125 56 5 92 213 15 134 7.76e-26 105
Msa1449680 AT1G53720.2 36.970 165 88 7 97 250 8 167 5.06e-17 79.7
Msa1449680 AT1G53720.1 36.970 165 88 7 97 250 8 167 6.51e-17 80.1
Msa1449680 AT3G66654.4 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1449680 AT3G66654.2 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1449680 AT3G66654.3 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1449680 AT3G66654.1 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1449680 AT3G66654.5 23.967 242 149 8 1 231 1 218 4.15e-12 64.3
Msa1449680 AT2G47320.1 31.818 132 83 4 99 230 87 211 7.31e-11 60.8

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCAGAACCTTCTTTC+TGG 0.154886 tig0032664:-33847 Msa1449680:CDS
CAATTAATGTATAAGGATTT+TGG 0.155123 tig0032664:+30940 None:intergenic
AGGATTGTTATTGGCCTATT+TGG 0.177067 tig0032664:-33024 Msa1449680:CDS
AATCAAAGATTTCATGATTC+AGG 0.190133 tig0032664:-32799 Msa1449680:CDS
GACAATCGCCATGTTGTATT+TGG 0.201360 tig0032664:-31308 Msa1449680:CDS
TCGGAAATTCTCAACTGTTT+TGG 0.213114 tig0032664:+32990 None:intergenic
GTTAATTATAGTGAGAAAAT+TGG 0.213849 tig0032664:-30872 Msa1449680:three_prime_UTR
TCACTTCAGCTGAAACTTAT+AGG 0.216930 tig0032664:+33996 None:intergenic
AATTGACTGCCGTTACTATT+AGG 0.258601 tig0032664:+32367 None:intergenic
GCAGTTAAGGAGGGTGGTTT+TGG 0.262552 tig0032664:-31115 Msa1449680:three_prime_UTR
TCTGCTGGAAGGATTGTTAT+TGG 0.310916 tig0032664:-33033 Msa1449680:CDS
GGTAGTTCAATTCCTGTGTT+TGG 0.318369 tig0032664:-31079 Msa1449680:three_prime_UTR
AAAATGACAATTAATGTATA+AGG 0.322234 tig0032664:+30933 None:intergenic
GAAAACCTTGCTTGTTACTT+TGG 0.335769 tig0032664:+33080 None:intergenic
TCATTACGCGGCTAGGCTTT+CGG 0.339565 tig0032664:-33305 Msa1449680:CDS
AACCACGCGTGTTATCTAAA+AGG 0.362659 tig0032664:+34024 None:intergenic
TGGGAACAACATCTCCAAAT+AGG 0.365016 tig0032664:+33010 None:intergenic
AATGTGGCACAAAACTTTCT+AGG 0.369756 tig0032664:+33928 None:intergenic
ACTGGTGGAGTCAGTATCTA+TGG 0.378727 tig0032664:-32646 Msa1449680:CDS
AATTTATGCTTCTGAACTGT+TGG 0.402995 tig0032664:-30902 Msa1449680:three_prime_UTR
AAGCGAAATCAATCACTTCT+CGG 0.414942 tig0032664:-33267 Msa1449680:CDS
TGTCAATTACAATGCAGTTA+AGG 0.425790 tig0032664:-31128 Msa1449680:three_prime_UTR
TTCTGGTTTCAATGCTGTCC+AGG 0.432366 tig0032664:-33830 Msa1449680:intron
TGTGCAGGAGAGAAAGGATA+TGG 0.434325 tig0032664:-32849 Msa1449680:intron
TCTGGAGAACTTCCTCTAGA+TGG 0.439502 tig0032664:-31188 Msa1449680:CDS
TTCTTTGATGTAGTTATTGG+AGG 0.441576 tig0032664:-33060 Msa1449680:CDS
AGTCTGCTAATGCATAATAT+AGG 0.446327 tig0032664:+30968 None:intergenic
ACTCGAGTGTGAAGAAGATT+AGG 0.448639 tig0032664:-33958 Msa1449680:five_prime_UTR
ATCAAAGATTTCATGATTCA+GGG 0.450983 tig0032664:-32798 Msa1449680:CDS
GTATTTGGACATGTCATTGA+TGG 0.451288 tig0032664:-31293 Msa1449680:CDS
ATCTTTGTTCTCAACACAGT+TGG 0.459490 tig0032664:-33872 Msa1449680:CDS
AGATTTCATGATTCAGGGAG+GGG 0.477957 tig0032664:-32793 Msa1449680:CDS
AATAACTGTGCAGGAGAGAA+AGG 0.485014 tig0032664:-32855 Msa1449680:intron
GGATGCAGTAAATTGTCATC+AGG 0.485711 tig0032664:-33331 Msa1449680:CDS
AATAATTAAATGCCACTGAA+AGG 0.490665 tig0032664:-31032 Msa1449680:three_prime_UTR
AATTTCCGAGCTTTGTGCAC+AGG 0.492690 tig0032664:-32976 Msa1449680:intron
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 tig0032664:-32415 Msa1449680:intron
ACTGCATCCAAGGTGTGCTC+TGG 0.499496 tig0032664:+33345 None:intergenic
ACATGCAAAATTGTTAACTC+TGG 0.506072 tig0032664:-31206 Msa1449680:CDS
ATAATTAAATGCCACTGAAA+GGG 0.508280 tig0032664:-31031 Msa1449680:three_prime_UTR
TTTAATTGGATGCAGGGAAC+TGG 0.519277 tig0032664:-32664 Msa1449680:intron
GCTTACCTGTGCACAAAGCT+CGG 0.530446 tig0032664:+32971 None:intergenic
CAGGATATCATTACGCGGCT+AGG 0.536024 tig0032664:-33312 Msa1449680:CDS
TTTGATTATGCGATGGAAGG+TGG 0.537643 tig0032664:+32815 None:intergenic
TACAATGCAGTTAAGGAGGG+TGG 0.541796 tig0032664:-31121 Msa1449680:three_prime_UTR
CATGTTGTAGACTTCATGGT+TGG 0.543936 tig0032664:-31330 Msa1449680:intron
TGGACATGTCATTGATGGAA+TGG 0.546157 tig0032664:-31288 Msa1449680:CDS
TTTGCCATGCTCAAAACTCC+AGG 0.566786 tig0032664:+32397 None:intergenic
GTTATTGGAGGTGAATCTGC+TGG 0.567014 tig0032664:-33048 Msa1449680:CDS
ATGACAATTTACTGCATCCA+AGG 0.568939 tig0032664:+33335 None:intergenic
CAATTACAATGCAGTTAAGG+AGG 0.570128 tig0032664:-31125 Msa1449680:three_prime_UTR
TGAAATCTTTGATTATGCGA+TGG 0.571761 tig0032664:+32808 None:intergenic
AAGATTTCATGATTCAGGGA+GGG 0.575956 tig0032664:-32794 Msa1449680:CDS
TGTGAGGACACTTGAATCAC+AGG 0.579355 tig0032664:-31261 Msa1449680:CDS
AATTGGATGCAGGGAACTGG+TGG 0.579513 tig0032664:-32661 Msa1449680:intron
TTCCTTGCAGTGAAGCATGT+TGG 0.583628 tig0032664:-32421 Msa1449680:intron
CAGCATTGAAACCAGAAAGA+AGG 0.585026 tig0032664:+33836 None:intergenic
TTCGCTAAATGCCCTTTCAG+TGG 0.592657 tig0032664:+31020 None:intergenic
ACTGCCGTTACTATTAGGAC+CGG 0.594476 tig0032664:+32372 None:intergenic
ATCTTTGATTATGCGATGGA+AGG 0.597625 tig0032664:+32812 None:intergenic
GAGACAAGCAGCTACAACAA+TGG 0.607894 tig0032664:-31239 Msa1449680:CDS
TTGGAGGTGAATCTGCTGGA+AGG 0.612520 tig0032664:-33044 Msa1449680:CDS
CAGGGAGGGGACTTCACAGA+AGG 0.623364 tig0032664:-32780 Msa1449680:CDS
AGCAGTACCAGAGCACACCT+TGG 0.625062 tig0032664:-33352 Msa1449680:CDS
AAGAATGTACAGCACTTCAG+AGG 0.635860 tig0032664:+31156 None:intergenic
AATTACAATGCAGTTAAGGA+GGG 0.640700 tig0032664:-31124 Msa1449680:three_prime_UTR
GCAAGCCAAAGTAACAAGCA+AGG 0.646742 tig0032664:-33085 Msa1449680:CDS
AATGCCGGTCCTAATAGTAA+CGG 0.652519 tig0032664:-32376 Msa1449680:CDS
AGCAATGACAATCCAAACAC+AGG 0.657721 tig0032664:+31067 None:intergenic
AGGATAGATCAACCATCTAG+AGG 0.669924 tig0032664:+31176 None:intergenic
AAAGATTTCATGATTCAGGG+AGG 0.670380 tig0032664:-32795 Msa1449680:CDS
GGTGGAGTCAGTATCTATGG+TGG 0.680041 tig0032664:-32643 Msa1449680:CDS
TGACATGTCCAAATACAACA+TGG 0.711914 tig0032664:+31300 None:intergenic
TTGATGGAATGGATGTTGTG+AGG 0.719565 tig0032664:-31277 Msa1449680:CDS
GTCATCAGGATATCATTACG+CGG 0.726671 tig0032664:-33317 Msa1449680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTTAAATAAATTTCAA+AGG + tig0032664:32715-32734 None:intergenic 10.0%
!! AAAACATATTATTAAAACTT+GGG + tig0032664:32971-32990 None:intergenic 10.0%
!!! TTTGTTTTTGTTTTCATTTT+AGG - tig0032664:31503-31522 Msa1449680:intron 15.0%
!!! TTGTTTTTGTTTTCATTTTA+GGG - tig0032664:31504-31523 Msa1449680:intron 15.0%
!! ACAAATTTAAATCTGAATAA+TGG + tig0032664:32388-32407 None:intergenic 15.0%
!! TAATCTAATAAACTATTCTA+AGG - tig0032664:32659-32678 Msa1449680:intron 15.0%
!! GAAAACATATTATTAAAACT+TGG + tig0032664:32972-32991 None:intergenic 15.0%
!!! AAATTTGAGTTTTGAAATAT+AGG + tig0032664:33137-33156 None:intergenic 15.0%
!! AAAATGACAATTAATGTATA+AGG + tig0032664:33968-33987 None:intergenic 15.0%
!! GTTTAATAAGTCTTTAAATG+TGG - tig0032664:31368-31387 Msa1449680:intron 20.0%
!! TGTAAATGTACATTGTTAAT+GGG - tig0032664:31471-31490 Msa1449680:intron 20.0%
!!! TGTTTTTGTTTTCATTTTAG+GGG - tig0032664:31505-31524 Msa1449680:intron 20.0%
!!! TAAGCATTCAAATTTTTCTT+CGG - tig0032664:31945-31964 Msa1449680:intron 20.0%
!!! CACATCAAATATGTTTTAAT+TGG - tig0032664:32220-32239 Msa1449680:intron 20.0%
!!! TGTCATTTTAATCTTTTTAC+TGG - tig0032664:32405-32424 Msa1449680:CDS 20.0%
!! TTCATAAAGTAATAGAAGAT+GGG + tig0032664:32589-32608 None:intergenic 20.0%
!! ATTCATAAAGTAATAGAAGA+TGG + tig0032664:32590-32609 None:intergenic 20.0%
!! ATTACTTTATGAATCAGATA+AGG - tig0032664:32596-32615 Msa1449680:intron 20.0%
!! TTACTTTATGAATCAGATAA+GGG - tig0032664:32597-32616 Msa1449680:intron 20.0%
!! TTAGCATTTGTATTAACATT+TGG + tig0032664:32785-32804 None:intergenic 20.0%
!!! AGCATTTAGAATAACTTATT+CGG + tig0032664:32821-32840 None:intergenic 20.0%
!! AATATTCCTTGTATGTAAAA+GGG + tig0032664:33007-33026 None:intergenic 20.0%
!! TAATATTCCTTGTATGTAAA+AGG + tig0032664:33008-33027 None:intergenic 20.0%
!! TTTACATACAAGGAATATTA+TGG - tig0032664:33008-33027 Msa1449680:CDS 20.0%
!! TTACATACAAGGAATATTAT+GGG - tig0032664:33009-33028 Msa1449680:CDS 20.0%
!!! TTTTTATGGATTTTAAACTG+TGG - tig0032664:33178-33197 Msa1449680:intron 20.0%
!!! CAATTAATGTATAAGGATTT+TGG + tig0032664:33961-33980 None:intergenic 20.0%
!! GTTAATTATAGTGAGAAAAT+TGG - tig0032664:34026-34045 Msa1449680:five_prime_UTR 20.0%
!!! GACTAACAAGAAACTTTTTT+GGG + tig0032664:31001-31020 None:intergenic 25.0%
!!! TGACTAACAAGAAACTTTTT+TGG + tig0032664:31002-31021 None:intergenic 25.0%
! AAAAAGTTTCTTGTTAGTCA+TGG - tig0032664:31002-31021 Msa1449680:three_prime_UTR 25.0%
! ATAAGAATTAGATAGTAACC+TGG + tig0032664:31089-31108 None:intergenic 25.0%
!! TTAAGGTGTTTATTCAAACA+GGG + tig0032664:31134-31153 None:intergenic 25.0%
!! ATTAAGGTGTTTATTCAAAC+AGG + tig0032664:31135-31154 None:intergenic 25.0%
! CTGTAAATGTACATTGTTAA+TGG - tig0032664:31470-31489 Msa1449680:intron 25.0%
!! CCAAATCACGTAATTTTTAA+TGG + tig0032664:31693-31712 None:intergenic 25.0%
! CCATTAAAAATTACGTGATT+TGG - tig0032664:31690-31709 Msa1449680:intron 25.0%
!! ATTTCGTTTGCAGAAAATTT+TGG - tig0032664:31714-31733 Msa1449680:intron 25.0%
!! AAAATTTTGGATAGCCAATT+CGG - tig0032664:31727-31746 Msa1449680:intron 25.0%
!! ATTGGTTTCATTATCTTACA+TGG - tig0032664:31764-31783 Msa1449680:intron 25.0%
!! GTTTTCTTTGATGTAGTTAT+TGG - tig0032664:31835-31854 Msa1449680:intron 25.0%
! AATCAAAGATTTCATGATTC+AGG - tig0032664:32099-32118 Msa1449680:intron 25.0%
! ATCAAAGATTTCATGATTCA+GGG - tig0032664:32100-32119 Msa1449680:intron 25.0%
! AGCGTACTAACAAAATATAA+CGG + tig0032664:32155-32174 None:intergenic 25.0%
!!! AATATGTTTTAATTGGATGC+AGG - tig0032664:32227-32246 Msa1449680:intron 25.0%
!!! ATATGTTTTAATTGGATGCA+GGG - tig0032664:32228-32247 Msa1449680:intron 25.0%
!! CAGTATTAAAAGTTTTGCTT+TGG - tig0032664:32362-32381 Msa1449680:CDS 25.0%
!!! ATTTTTTATTTGCACTGTAC+CGG - tig0032664:32551-32570 Msa1449680:intron 25.0%
! TACTTTATGAATCAGATAAG+GGG - tig0032664:32598-32617 Msa1449680:intron 25.0%
!!! CTGGAAATGTATTTTTAAGT+GGG - tig0032664:32902-32921 Msa1449680:intron 25.0%
! AACTCAAAAAACAACTTGTA+AGG + tig0032664:32940-32959 None:intergenic 25.0%
!!! TACAAGTTGTTTTTTGAGTT+AGG - tig0032664:32940-32959 Msa1449680:intron 25.0%
! CATATTATTAAAACTTGGGT+TGG + tig0032664:32967-32986 None:intergenic 25.0%
!!! CTAAAAGTCTGTACTTTTTA+TGG - tig0032664:33164-33183 Msa1449680:intron 25.0%
! TTGACCTACTGAAAAAATAA+AGG - tig0032664:33218-33237 Msa1449680:intron 25.0%
! ATAATTGCATTTGTGAGATT+GGG + tig0032664:33261-33280 None:intergenic 25.0%
! TATAATTGCATTTGTGAGAT+TGG + tig0032664:33262-33281 None:intergenic 25.0%
! CAATTGCTACAATGTTATAT+TGG - tig0032664:33295-33314 Msa1449680:CDS 25.0%
! TTTGACAATTTAACATCAAC+AGG - tig0032664:33329-33348 Msa1449680:CDS 25.0%
! TTGACAATTTAACATCAACA+GGG - tig0032664:33330-33349 Msa1449680:CDS 25.0%
! TGCAATCAAAGTCAATAAAA+AGG + tig0032664:33382-33401 None:intergenic 25.0%
!! ACAATTTTGCATGTTTTCAA+GGG + tig0032664:33686-33705 None:intergenic 25.0%
!! AACAATTTTGCATGTTTTCA+AGG + tig0032664:33687-33706 None:intergenic 25.0%
! AATAATTAAATGCCACTGAA+AGG - tig0032664:33866-33885 Msa1449680:CDS 25.0%
! ATAATTAAATGCCACTGAAA+GGG - tig0032664:33867-33886 Msa1449680:CDS 25.0%
!!! AGCGAATTACTTATTTTGTA+AGG - tig0032664:33895-33914 Msa1449680:exon 25.0%
!!! TAACAAGAAACTTTTTTGGG+TGG + tig0032664:30998-31017 None:intergenic 30.0%
ATGCTATAAGCTGCAAATTA+AGG + tig0032664:31151-31170 None:intergenic 30.0%
! GCATAAGAATGTGTTACTAA+AGG - tig0032664:31444-31463 Msa1449680:intron 30.0%
TTCTTTGATGTAGTTATTGG+AGG - tig0032664:31838-31857 Msa1449680:intron 30.0%
! TATGAGTATTGTGGTGAAAT+TGG - tig0032664:31982-32001 Msa1449680:intron 30.0%
TTTGAGAATAATAACTGTGC+AGG - tig0032664:32034-32053 Msa1449680:intron 30.0%
TGAAATCTTTGATTATGCGA+TGG + tig0032664:32093-32112 None:intergenic 30.0%
TACATATACACATGATGCTA+AGG - tig0032664:32181-32200 Msa1449680:intron 30.0%
ACATATACACATGATGCTAA+GGG - tig0032664:32182-32201 Msa1449680:intron 30.0%
CCACTTAAAAATACATTTCC+AGG + tig0032664:32904-32923 None:intergenic 30.0%
!! CCTGGAAATGTATTTTTAAG+TGG - tig0032664:32901-32920 Msa1449680:intron 30.0%
AAAAACAACTTGTAAGGTGA+GGG + tig0032664:32934-32953 None:intergenic 30.0%
AAAAAACAACTTGTAAGGTG+AGG + tig0032664:32935-32954 None:intergenic 30.0%
!! AAAAGTACAGACTTTTAGCT+AGG + tig0032664:33162-33181 None:intergenic 30.0%
!!! CAAGCCTTTATTTTTTCAGT+AGG + tig0032664:33225-33244 None:intergenic 30.0%
! TTTTCATGTTGTAGACTTCA+TGG - tig0032664:33564-33583 Msa1449680:intron 30.0%
ACATGCAAAATTGTTAACTC+TGG - tig0032664:33692-33711 Msa1449680:intron 30.0%
TGTCAATTACAATGCAGTTA+AGG - tig0032664:33770-33789 Msa1449680:intron 30.0%
AATTACAATGCAGTTAAGGA+GGG - tig0032664:33774-33793 Msa1449680:intron 30.0%
AGTCTGCTAATGCATAATAT+AGG + tig0032664:33933-33952 None:intergenic 30.0%
AATTTATGCTTCTGAACTGT+TGG - tig0032664:33996-34015 Msa1449680:five_prime_UTR 30.0%
TCACTTCAGCTGAAACTTAT+AGG + tig0032664:30905-30924 None:intergenic 35.0%
AATGTGGCACAAAACTTTCT+AGG + tig0032664:30973-30992 None:intergenic 35.0%
!!! ACTTTTTTGGGTGGAAAATG+TGG + tig0032664:30989-31008 None:intergenic 35.0%
ATCTTTGTTCTCAACACAGT+TGG - tig0032664:31026-31045 Msa1449680:three_prime_UTR 35.0%
ATGACAATTTACTGCATCCA+AGG + tig0032664:31566-31585 None:intergenic 35.0%
AAGCGAAATCAATCACTTCT+CGG - tig0032664:31631-31650 Msa1449680:intron 35.0%
! GAAAACCTTGCTTGTTACTT+TGG + tig0032664:31821-31840 None:intergenic 35.0%
! AGGATTGTTATTGGCCTATT+TGG - tig0032664:31874-31893 Msa1449680:intron 35.0%
! CGGAAATTCTCAACTGTTTT+GGG + tig0032664:31910-31929 None:intergenic 35.0%
! TCGGAAATTCTCAACTGTTT+TGG + tig0032664:31911-31930 None:intergenic 35.0%
! TTGTCGTTGTATGAGTATTG+TGG - tig0032664:31973-31992 Msa1449680:intron 35.0%
ATCTTTGATTATGCGATGGA+AGG + tig0032664:32089-32108 None:intergenic 35.0%
AAAGATTTCATGATTCAGGG+AGG - tig0032664:32103-32122 Msa1449680:intron 35.0%
AAGATTTCATGATTCAGGGA+GGG - tig0032664:32104-32123 Msa1449680:intron 35.0%
! TCTTTTTACTGGACTGTCAA+TGG - tig0032664:32416-32435 Msa1449680:intron 35.0%
AATTGACTGCCGTTACTATT+AGG + tig0032664:32534-32553 None:intergenic 35.0%
! GAAGTTCCCTTTTACATACA+AGG - tig0032664:32998-33017 Msa1449680:CDS 35.0%
! ATAGGCTGTGTGTTTCATTT+TGG + tig0032664:33119-33138 None:intergenic 35.0%
TGGTTGAGACGCTAAATATT+AGG + tig0032664:33471-33490 None:intergenic 35.0%
TGACATGTCCAAATACAACA+TGG + tig0032664:33601-33620 None:intergenic 35.0%
GTATTTGGACATGTCATTGA+TGG - tig0032664:33605-33624 Msa1449680:intron 35.0%
CAATTACAATGCAGTTAAGG+AGG - tig0032664:33773-33792 Msa1449680:intron 35.0%
! ATCCTTTTAGATAACACGCG+TGG - tig0032664:30872-30891 Msa1449680:three_prime_UTR 40.0%
AACCACGCGTGTTATCTAAA+AGG + tig0032664:30877-30896 None:intergenic 40.0%
ACTCGAGTGTGAAGAAGATT+AGG - tig0032664:30940-30959 Msa1449680:three_prime_UTR 40.0%
! CAGCATTGAAACCAGAAAGA+AGG + tig0032664:31065-31084 None:intergenic 40.0%
GGATGCAGTAAATTGTCATC+AGG - tig0032664:31567-31586 Msa1449680:intron 40.0%
GTCATCAGGATATCATTACG+CGG - tig0032664:31581-31600 Msa1449680:intron 40.0%
!! GTTTTGAATCACTGCCGAAT+TGG + tig0032664:31744-31763 None:intergenic 40.0%
TCGGCAGTGATTCAAAACAT+TGG - tig0032664:31746-31765 Msa1449680:intron 40.0%
!! TACATGGCTGTGTTACTTCT+AGG - tig0032664:31780-31799 Msa1449680:intron 40.0%
TCTGCTGGAAGGATTGTTAT+TGG - tig0032664:31865-31884 Msa1449680:intron 40.0%
TGGGAACAACATCTCCAAAT+AGG + tig0032664:31891-31910 None:intergenic 40.0%
AATAACTGTGCAGGAGAGAA+AGG - tig0032664:32043-32062 Msa1449680:intron 40.0%
TTTGATTATGCGATGGAAGG+TGG + tig0032664:32086-32105 None:intergenic 40.0%
AGATTTCATGATTCAGGGAG+GGG - tig0032664:32105-32124 Msa1449680:intron 40.0%
TTTAATTGGATGCAGGGAAC+TGG - tig0032664:32234-32253 Msa1449680:intron 40.0%
AATGCCGGTCCTAATAGTAA+CGG - tig0032664:32522-32541 Msa1449680:intron 40.0%
AGATGGGAAAATAGTCTCAC+CGG + tig0032664:32573-32592 None:intergenic 40.0%
GTCCCACGTTAAATGAGATA+TGG - tig0032664:32878-32897 Msa1449680:intron 40.0%
GGCCATATCTCATTTAACGT+GGG + tig0032664:32883-32902 None:intergenic 40.0%
AGGCCATATCTCATTTAACG+TGG + tig0032664:32884-32903 None:intergenic 40.0%
ACGTTAAATGAGATATGGCC+TGG - tig0032664:32883-32902 Msa1449680:intron 40.0%
CATGTTGTAGACTTCATGGT+TGG - tig0032664:33568-33587 Msa1449680:intron 40.0%
GACAATCGCCATGTTGTATT+TGG - tig0032664:33590-33609 Msa1449680:intron 40.0%
TGGACATGTCATTGATGGAA+TGG - tig0032664:33610-33629 Msa1449680:intron 40.0%
TTGATGGAATGGATGTTGTG+AGG - tig0032664:33621-33640 Msa1449680:intron 40.0%
AGGATAGATCAACCATCTAG+AGG + tig0032664:33725-33744 None:intergenic 40.0%
AAGAATGTACAGCACTTCAG+AGG + tig0032664:33745-33764 None:intergenic 40.0%
GGTAGTTCAATTCCTGTGTT+TGG - tig0032664:33819-33838 Msa1449680:intron 40.0%
AGCAATGACAATCCAAACAC+AGG + tig0032664:33834-33853 None:intergenic 40.0%
CAGAGTCAGAACCTTCTTTC+TGG - tig0032664:31051-31070 Msa1449680:three_prime_UTR 45.0%
!! TTCTGGTTTCAATGCTGTCC+AGG - tig0032664:31068-31087 Msa1449680:three_prime_UTR 45.0%
GCAAGCCAAAGTAACAAGCA+AGG - tig0032664:31813-31832 Msa1449680:intron 45.0%
GTTATTGGAGGTGAATCTGC+TGG - tig0032664:31850-31869 Msa1449680:intron 45.0%
! AATTTCCGAGCTTTGTGCAC+AGG - tig0032664:31922-31941 Msa1449680:intron 45.0%
TGTGCAGGAGAGAAAGGATA+TGG - tig0032664:32049-32068 Msa1449680:intron 45.0%
ACTGGTGGAGTCAGTATCTA+TGG - tig0032664:32252-32271 Msa1449680:intron 45.0%
TTCCTTGCAGTGAAGCATGT+TGG - tig0032664:32477-32496 Msa1449680:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG + tig0032664:32504-32523 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG - tig0032664:32507-32526 Msa1449680:intron 45.0%
ACTGCCGTTACTATTAGGAC+CGG + tig0032664:32529-32548 None:intergenic 45.0%
AAGGGGAATCCTTCTGTGTT+TGG - tig0032664:32615-32634 Msa1449680:intron 45.0%
AGGGGAATCCTTCTGTGTTT+GGG - tig0032664:32616-32635 Msa1449680:intron 45.0%
CCTGTTTACCCAAACACAGA+AGG + tig0032664:32627-32646 None:intergenic 45.0%
CCTTCTGTGTTTGGGTAAAC+AGG - tig0032664:32624-32643 Msa1449680:CDS 45.0%
TGTGAGGACACTTGAATCAC+AGG - tig0032664:33637-33656 Msa1449680:intron 45.0%
GAGACAAGCAGCTACAACAA+TGG - tig0032664:33659-33678 Msa1449680:intron 45.0%
TCTGGAGAACTTCCTCTAGA+TGG - tig0032664:33710-33729 Msa1449680:intron 45.0%
TACAATGCAGTTAAGGAGGG+TGG - tig0032664:33777-33796 Msa1449680:intron 45.0%
! CAGTTAAGGAGGGTGGTTTT+GGG - tig0032664:33784-33803 Msa1449680:intron 45.0%
!! AGTTAAGGAGGGTGGTTTTG+GGG - tig0032664:33785-33804 Msa1449680:intron 45.0%
TTCGCTAAATGCCCTTTCAG+TGG + tig0032664:33881-33900 None:intergenic 45.0%
CAGGATATCATTACGCGGCT+AGG - tig0032664:31586-31605 Msa1449680:intron 50.0%
TCATTACGCGGCTAGGCTTT+CGG - tig0032664:31593-31612 Msa1449680:intron 50.0%
TTGGAGGTGAATCTGCTGGA+AGG - tig0032664:31854-31873 Msa1449680:intron 50.0%
GCTTACCTGTGCACAAAGCT+CGG + tig0032664:31930-31949 None:intergenic 50.0%
AATTGGATGCAGGGAACTGG+TGG - tig0032664:32237-32256 Msa1449680:intron 50.0%
GGTGGAGTCAGTATCTATGG+TGG - tig0032664:32255-32274 Msa1449680:intron 50.0%
GACCAACATGCTTCACTGCA+AGG + tig0032664:32482-32501 None:intergenic 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG - tig0032664:32497-32516 Msa1449680:intron 50.0%
! GCAGTTAAGGAGGGTGGTTT+TGG - tig0032664:33783-33802 Msa1449680:intron 50.0%
AGCAGTACCAGAGCACACCT+TGG - tig0032664:31546-31565 Msa1449680:intron 55.0%
ACTGCATCCAAGGTGTGCTC+TGG + tig0032664:31556-31575 None:intergenic 55.0%
GCAGTGAAGCATGTTGGTCC+TGG - tig0032664:32483-32502 Msa1449680:intron 55.0%
!!! TAAGGAGGGTGGTTTTGGGG+AGG - tig0032664:33788-33807 Msa1449680:intron 55.0%
CAGGGAGGGGACTTCACAGA+AGG - tig0032664:32118-32137 Msa1449680:intron 60.0%
!!! GAGGGTGGTTTTGGGGAGGA+GGG - tig0032664:33792-33811 Msa1449680:intron 60.0%
!!! GTGGTTTTGGGGAGGAGGGA+GGG - tig0032664:33796-33815 Msa1449680:intron 60.0%
!!! TGGTTTTGGGGAGGAGGGAG+GGG - tig0032664:33797-33816 Msa1449680:intron 60.0%
!!! GGAGGGTGGTTTTGGGGAGG+AGG - tig0032664:33791-33810 Msa1449680:intron 65.0%
!!! GGTGGTTTTGGGGAGGAGGG+AGG - tig0032664:33795-33814 Msa1449680:intron 65.0%
!!! GGTTTTGGGGAGGAGGGAGG+GGG - tig0032664:33798-33817 Msa1449680:intron 65.0%
! GTGCGTGCGCGCGCACGTGC+TGG + tig0032664:33491-33510 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0032664 gene 30862 34058 30862 ID=Msa1449680;Name=Msa1449680
tig0032664 mRNA 30862 34058 30862 ID=Msa1449680-mRNA-1;Parent=Msa1449680;Name=Msa1449680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|1|1|1|1|1|7|322|251
tig0032664 exon 30862 31342 30862 ID=Msa1449680-mRNA-1:exon:17059;Parent=Msa1449680-mRNA-1
tig0032664 exon 32348 32433 32348 ID=Msa1449680-mRNA-1:exon:17058;Parent=Msa1449680-mRNA-1
tig0032664 exon 32617 32671 32617 ID=Msa1449680-mRNA-1:exon:17057;Parent=Msa1449680-mRNA-1
tig0032664 exon 32776 32864 32776 ID=Msa1449680-mRNA-1:exon:17056;Parent=Msa1449680-mRNA-1
tig0032664 exon 32977 33118 32977 ID=Msa1449680-mRNA-1:exon:17055;Parent=Msa1449680-mRNA-1
tig0032664 exon 33240 33395 33240 ID=Msa1449680-mRNA-1:exon:17054;Parent=Msa1449680-mRNA-1
tig0032664 exon 33831 34058 33831 ID=Msa1449680-mRNA-1:exon:17053;Parent=Msa1449680-mRNA-1
tig0032664 five_prime_UTR 33900 34058 33900 ID=Msa1449680-mRNA-1:five_prime_utr;Parent=Msa1449680-mRNA-1
tig0032664 CDS 33831 33899 33831 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 33240 33395 33240 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 32977 33118 32977 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 32776 32864 32776 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 32617 32671 32617 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 32348 32433 32348 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 CDS 31184 31342 31184 ID=Msa1449680-mRNA-1:cds;Parent=Msa1449680-mRNA-1
tig0032664 three_prime_UTR 30862 31183 30862 ID=Msa1449680-mRNA-1:three_prime_utr;Parent=Msa1449680-mRNA-1
Gene Sequence

>Msa1449680

ATGGCATCTTTGTTCTCAACACAGTTGGTGCAGAGTCAGAACCTTCTTTCTGGTTTCAATGCTGTCCAGGGGAAGTCACATGTAGTCTGTAGCAGTACCAGAGCACACCTTGGATGCAGTAAATTGTCATCAGGATATCATTACGCGGCTAGGCTTTCGGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTACTAGTAGTGCTAGTGCTGCAGATCTGCAAGCCAAAGTAACAAGCAAGGTTTTCTTTGATGTAGTTATTGGAGGTGAATCTGCTGGAAGGATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGTTGAGAATTTCCGAGCTTTGTGCACAGGAGAGAAAGGATATGGTTACAAAGATTCCACCTTCCATCGCATAATCAAAGATTTCATGATTCAGGGAGGGGACTTCACAGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGATGAGAATTTTACTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATAGTAACGGCAGTCAATTTTTTATTTGCACTGTACCGACTTCATGGTTGGACAATCGCCATGTTGTATTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCACAGGAGACAAGCAGCTACAACAATGGTCCCTTGAAAACATGCAAAATTGTTAACTCTGGAGAACTTCCTCTAGATGGTTGA

Protein sequence

>Msa1449680

MASLFSTQLVQSQNLLSGFNAVQGKSHVVCSSTRAHLGCSKLSSGYHYAARLSVSQQSKAKSITSRRITCTSSASAADLQAKVTSKVFFDVVIGGESAGRIVIGLFGDVVPKTVENFRALCTGEKGYGYKDSTFHRIIKDFMIQGGDFTEGNGTGGVSIYGGKFEDENFTLKHVGPGVLSMANAGPNSNGSQFFICTVPTSWLDNRHVVFGHVIDGMDVVRTLESQETSSYNNGPLKTCKIVNSGELPLDG*