Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519540 | XP_013461799.1 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519540 | sp|Q9FZI8|LCAT1_ARATH | 59.059 | 425 | 164 | 4 | 10 | 431 | 4 | 421 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519540 | A0A072V1F9 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 894 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017420 | Msa0519540 | 0.834650 | 2.651002e-56 | -8.615850e-47 |
| Msa0026120 | Msa0519540 | 0.807938 | 3.958546e-50 | -8.615850e-47 |
| Msa0030030 | Msa0519540 | 0.832540 | 8.920107e-56 | -8.615850e-47 |
| Msa0077330 | Msa0519540 | 0.841389 | 4.894822e-58 | -8.615850e-47 |
| Msa0091340 | Msa0519540 | 0.806494 | 8.004029e-50 | -8.615850e-47 |
| Msa0112800 | Msa0519540 | 0.801471 | 8.863475e-49 | -8.615850e-47 |
| Msa0155030 | Msa0519540 | 0.823181 | 1.590641e-53 | -8.615850e-47 |
| Msa0156780 | Msa0519540 | 0.836655 | 8.240019e-57 | -8.615850e-47 |
| Msa0166580 | Msa0519540 | 0.818091 | 2.349293e-52 | -8.615850e-47 |
| Msa0174800 | Msa0519540 | 0.802490 | 5.474645e-49 | -8.615850e-47 |
| Msa0197730 | Msa0519540 | 0.826709 | 2.337753e-54 | -8.615850e-47 |
| Msa0216010 | Msa0519540 | 0.802360 | 5.821917e-49 | -8.615850e-47 |
| Msa0365150 | Msa0519540 | 0.819718 | 1.002368e-52 | -8.615850e-47 |
| Msa0372250 | Msa0519540 | 0.820641 | 6.161720e-53 | -8.615850e-47 |
| Msa0416880 | Msa0519540 | 0.809938 | 1.477631e-50 | -8.615850e-47 |
| Msa0417130 | Msa0519540 | 0.841388 | 4.899175e-58 | -8.615850e-47 |
| Msa0475830 | Msa0519540 | 0.803697 | 3.080969e-49 | -8.615850e-47 |
| Msa0243160 | Msa0519540 | 0.801302 | 9.602228e-49 | -8.615850e-47 |
| Msa0244370 | Msa0519540 | 0.820267 | 7.507030e-53 | -8.615850e-47 |
| Msa0256170 | Msa0519540 | 0.847964 | 8.287405e-60 | -8.615850e-47 |
| Msa0256430 | Msa0519540 | 0.819371 | 1.202685e-52 | -8.615850e-47 |
| Msa0298590 | Msa0519540 | 0.808134 | 3.595926e-50 | -8.615850e-47 |
| Msa0321200 | Msa0519540 | 0.800305 | 1.534161e-48 | -8.615850e-47 |
| Msa0352640 | Msa0519540 | 0.801004 | 1.104707e-48 | -8.615850e-47 |
| Msa0358720 | Msa0519540 | 0.811719 | 6.081432e-51 | -8.615850e-47 |
| Msa0509350 | Msa0519540 | 0.805881 | 1.077823e-49 | -8.615850e-47 |
| Msa0519540 | Msa0554410 | 0.813966 | 1.958414e-51 | -8.615850e-47 |
| Msa0519540 | Msa0569630 | 0.811622 | 6.386264e-51 | -8.615850e-47 |
| Msa0519540 | Msa0574720 | 0.846573 | 1.995100e-59 | -8.615850e-47 |
| Msa0519540 | Msa0648160 | 0.807680 | 4.489944e-50 | -8.615850e-47 |
| Msa0519540 | Msa0685880 | 0.805980 | 1.027073e-49 | -8.615850e-47 |
| Msa0519540 | Msa0713530 | 0.806492 | 8.014385e-50 | -8.615850e-47 |
| Msa0519540 | Msa0804340 | 0.814007 | 1.918506e-51 | -8.615850e-47 |
| Msa0519540 | Msa0842270 | 0.800664 | 1.296101e-48 | -8.615850e-47 |
| Msa0519540 | Msa0967250 | 0.807985 | 3.867128e-50 | -8.615850e-47 |
| Msa0519540 | Msa0978290 | 0.811428 | 7.036370e-51 | -8.615850e-47 |
| Msa0519540 | Msa0981300 | 0.802829 | 4.659814e-49 | -8.615850e-47 |
| Msa0519540 | Msa0984820 | 0.801273 | 9.730373e-49 | -8.615850e-47 |
| Msa0519540 | Msa0985040 | 0.810724 | 9.996465e-51 | -8.615850e-47 |
| Msa0519540 | Msa1016130 | 0.829089 | 6.255089e-55 | -8.615850e-47 |
| Msa0519540 | Msa1031220 | 0.819350 | 1.216199e-52 | -8.615850e-47 |
| Msa0519540 | Msa1033670 | 0.820018 | 8.560013e-53 | -8.615850e-47 |
| Msa0519540 | Msa1070930 | 0.800245 | 1.577340e-48 | -8.615850e-47 |
| Msa0519540 | Msa1117830 | 0.810211 | 1.290097e-50 | -8.615850e-47 |
| Msa0519540 | Msa1188820 | 0.861138 | 1.265892e-63 | -8.615850e-47 |
| Msa0519540 | Msa1211880 | 0.811661 | 6.262264e-51 | -8.615850e-47 |
| Msa0519540 | Msa1231520 | 0.802733 | 4.876900e-49 | -8.615850e-47 |
| Msa0519540 | Msa1262740 | 0.808409 | 3.140767e-50 | -8.615850e-47 |
| Msa0519540 | Msa1274310 | 0.807197 | 5.685924e-50 | -8.615850e-47 |
| Msa0519540 | Msa1297540 | 0.809642 | 1.710920e-50 | -8.615850e-47 |
| Msa0519540 | Msa1316720 | 0.809246 | 2.080060e-50 | -8.615850e-47 |
| Msa0519540 | Msa1332180 | 0.816295 | 5.952122e-52 | -8.615850e-47 |
| Msa0519540 | Msa1388070 | 0.801206 | 1.004565e-48 | -8.615850e-47 |
| Msa0519540 | Msa1443440 | 0.802967 | 4.362856e-49 | -8.615850e-47 |
| Msa0519540 | Msa1445700 | 0.802389 | 5.741690e-49 | -8.615850e-47 |
| Msa0519540 | Msa1456410 | 0.833029 | 6.742345e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519540 | MtrunA17_Chr3g0134981 | 96.437 | 449 | 16 | 0 | 1 | 449 | 1 | 449 | 0.0 | 894 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519540 | AT1G27480.1 | 59.059 | 425 | 164 | 4 | 10 | 431 | 4 | 421 | 0.0 | 517 |
Find 98 sgRNAs with CRISPR-Local
Find 366 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTAGGTCGTTTAGGAATT+TGG | 0.093532 | 3_4:+71747557 | None:intergenic |
| AAAATGGTTGGTTTAGATTA+TGG | 0.209097 | 3_4:-71751679 | Msa0519540:CDS |
| AAAATTAAATTTGCAGATAA+TGG | 0.219301 | 3_4:+71746698 | None:intergenic |
| AAGAAGAAGGGTTTCGATTA+AGG | 0.254545 | 3_4:+71747445 | None:intergenic |
| TTACCTGGTATTAGTATAAC+TGG | 0.280325 | 3_4:+71751791 | None:intergenic |
| TTCCTATATCAATAATAAAA+TGG | 0.281605 | 3_4:+71746657 | None:intergenic |
| GTTGCACTTGATGAAATAAT+TGG | 0.291740 | 3_4:-71746859 | Msa0519540:CDS |
| TTAATCGAAACCCTTCTTCT+TGG | 0.309291 | 3_4:-71747443 | Msa0519540:CDS |
| TCAAATTCTTTAGGTCGTTT+AGG | 0.309491 | 3_4:+71747550 | None:intergenic |
| TTATCAATATCAAACATCTT+AGG | 0.316150 | 3_4:+71747249 | None:intergenic |
| TGTTGGCACTTGAATCTCTA+TGG | 0.323866 | 3_4:-71746957 | Msa0519540:CDS |
| TTTGCATCAGGCAATACTTT+GGG | 0.325360 | 3_4:-71747348 | Msa0519540:CDS |
| CTTTGTTTCTAGTGAAGCTT+TGG | 0.328266 | 3_4:+71751956 | None:intergenic |
| TCATAAGGATAAACCCCTTC+TGG | 0.333571 | 3_4:+71747153 | None:intergenic |
| CTCATGCTCAACTTGGTCTA+AGG | 0.334682 | 3_4:-71746816 | Msa0519540:CDS |
| GTGGCTATGACTTGTATTAT+AGG | 0.349728 | 3_4:-71747087 | Msa0519540:CDS |
| TGCGCTGAATAGCTTCTATA+TGG | 0.355751 | 3_4:+71747210 | None:intergenic |
| CTGTGTGAGACAAGTATTAC+TGG | 0.360336 | 3_4:+71747495 | None:intergenic |
| GGTAGAAGGTTTATATTTAG+TGG | 0.367636 | 3_4:+71751739 | None:intergenic |
| GGATCACAAATTAAGGTAGA+AGG | 0.371811 | 3_4:+71751725 | None:intergenic |
| GTGAAGCTTTGGATAATGTT+TGG | 0.373310 | 3_4:+71751967 | None:intergenic |
| GTTGTTGTTGCTTGTGCTAA+TGG | 0.373911 | 3_4:+71751820 | None:intergenic |
| GTACCATGGATCACAAATTA+AGG | 0.374013 | 3_4:+71751718 | None:intergenic |
| ATATGAGTTGCATATTTAGT+AGG | 0.380193 | 3_4:+71752016 | None:intergenic |
| AAGCTATTCAGCGCATGATA+TGG | 0.395729 | 3_4:-71747202 | Msa0519540:CDS |
| GAACAGCTTGGTTACATAGA+TGG | 0.397233 | 3_4:-71747654 | Msa0519540:CDS |
| TAGACCATATCGAAAATCAT+AGG | 0.397497 | 3_4:+71747611 | None:intergenic |
| TACTTGAAAGTTATTAAGAT+TGG | 0.398069 | 3_4:-71746916 | Msa0519540:CDS |
| ATAGATGGTGAAAATCTGTT+TGG | 0.403610 | 3_4:-71747639 | Msa0519540:CDS |
| GAGACACGTGTCCCTAGCTT+TGG | 0.408475 | 3_4:-71751551 | Msa0519540:CDS |
| TTATAGCACTTTCTGCTCCA+TGG | 0.410868 | 3_4:-71747398 | Msa0519540:CDS |
| ATATCAAACATCTTAGGATT+AGG | 0.419667 | 3_4:+71747255 | None:intergenic |
| ACTAGCAAAGGGTTTACTAA+TGG | 0.433212 | 3_4:+71747321 | None:intergenic |
| TATAGCACTTTCTGCTCCAT+GGG | 0.439917 | 3_4:-71747397 | Msa0519540:CDS |
| TATTACTGGCTTCCCTCCAT+TGG | 0.440820 | 3_4:+71747509 | None:intergenic |
| AGTTGGTTTCCTCCATTACC+TGG | 0.443847 | 3_4:+71751776 | None:intergenic |
| CTACCTTAATTTGTGATCCA+TGG | 0.444755 | 3_4:-71751721 | Msa0519540:CDS |
| TTCCTATAAAACAATTCCTC+TGG | 0.446085 | 3_4:+71747048 | None:intergenic |
| CTGTTCTAATGATTCTACTA+AGG | 0.448413 | 3_4:+71747671 | None:intergenic |
| GGTAAAATGCGAGTTTCATA+AGG | 0.448911 | 3_4:+71747138 | None:intergenic |
| TTTCAAGTTTGATATTAGAA+TGG | 0.450130 | 3_4:-71746567 | Msa0519540:three_prime_UTR |
| AATTTCTTGCGCCAAGAAGA+AGG | 0.458486 | 3_4:+71747432 | None:intergenic |
| GTTCATTTCTTACTAGCAAA+GGG | 0.458490 | 3_4:+71747310 | None:intergenic |
| GGTTTCGATTAAGGAGTTTG+AGG | 0.474784 | 3_4:+71747454 | None:intergenic |
| ATACAAGTCATAGCCACTTC+CGG | 0.477044 | 3_4:+71747093 | None:intergenic |
| TGAAAGTTATTAAGATTGGT+GGG | 0.480822 | 3_4:-71746912 | Msa0519540:CDS |
| TGTTCATTTCTTACTAGCAA+AGG | 0.481119 | 3_4:+71747309 | None:intergenic |
| GAAAATAGATGCACCGGAAG+TGG | 0.484086 | 3_4:-71747106 | Msa0519540:CDS |
| TTGAAAGTTATTAAGATTGG+TGG | 0.484679 | 3_4:-71746913 | Msa0519540:CDS |
| CATGCGAGAAGCAAAACATT+TGG | 0.491225 | 3_4:+71751625 | None:intergenic |
| TACTTGTGTAGGCTTGTCAC+AGG | 0.491877 | 3_4:-71747705 | Msa0519540:intron |
| ATACTTGTCTCACACAGCTT+GGG | 0.495176 | 3_4:-71747489 | Msa0519540:CDS |
| AATACTTGTCTCACACAGCT+TGG | 0.497555 | 3_4:-71747490 | Msa0519540:CDS |
| GTTATACTAATACCAGGTAA+TGG | 0.499610 | 3_4:-71751788 | Msa0519540:CDS |
| GAGGAAGTAGAACCAAAGCT+AGG | 0.502927 | 3_4:+71751539 | None:intergenic |
| GTAGAATCATTAGAACAGCT+TGG | 0.503633 | 3_4:-71747666 | Msa0519540:CDS |
| ATTAATTCTCATGCTCAACT+TGG | 0.515483 | 3_4:-71746823 | Msa0519540:CDS |
| AATTTGGAACCAACTTGAGA+TGG | 0.518350 | 3_4:+71747573 | None:intergenic |
| TGTGAACATGGTGAGCTTGT+TGG | 0.520209 | 3_4:-71746974 | Msa0519540:CDS |
| CTACAATTTCAAAACATCAA+TGG | 0.521982 | 3_4:+71746594 | None:intergenic |
| TTGCATCAGGCAATACTTTG+GGG | 0.522896 | 3_4:-71747347 | Msa0519540:CDS |
| CGATATGGTCTAGCTGCACC+AGG | 0.525375 | 3_4:-71747600 | Msa0519540:CDS |
| ATGACTTGTATTATAGGAAA+GGG | 0.529339 | 3_4:-71747081 | Msa0519540:CDS |
| ATTTGGAACCAACTTGAGAT+GGG | 0.545508 | 3_4:+71747574 | None:intergenic |
| TATGACTTGTATTATAGGAA+AGG | 0.546133 | 3_4:-71747082 | Msa0519540:CDS |
| ATTTCTTGCGCCAAGAAGAA+GGG | 0.548066 | 3_4:+71747433 | None:intergenic |
| TAGGATTAGGCAAAAGCCAT+AGG | 0.550005 | 3_4:+71747268 | None:intergenic |
| GTATTAGTATAACTGGATTG+AGG | 0.550552 | 3_4:+71751798 | None:intergenic |
| TAGGCTTGTCACAGGGTACA+TGG | 0.553390 | 3_4:-71747697 | Msa0519540:CDS |
| TCATCAACAGTTCCACCCCA+TGG | 0.553701 | 3_4:+71747381 | None:intergenic |
| GAAGCAAAACATTTGGTGAA+AGG | 0.556143 | 3_4:+71751632 | None:intergenic |
| GATAGCGAAAATAGATGCAC+CGG | 0.558129 | 3_4:-71747112 | Msa0519540:CDS |
| TTCTTGAAAGGAGGGTACCA+TGG | 0.560489 | 3_4:+71751704 | None:intergenic |
| CTTGTCTCACACAGCTTGGG+AGG | 0.564047 | 3_4:-71747486 | Msa0519540:CDS |
| GAAAGTTATTAAGATTGGTG+GGG | 0.564534 | 3_4:-71746911 | Msa0519540:CDS |
| AAAGCTAGTACTTGATGCGA+TGG | 0.565432 | 3_4:-71746733 | Msa0519540:three_prime_UTR |
| TGTTCTAATGATTCTACTAA+GGG | 0.567395 | 3_4:+71747672 | None:intergenic |
| GGGACACGTGTCTCAACTCC+AGG | 0.568189 | 3_4:+71751560 | None:intergenic |
| TGCATCAGGCAATACTTTGG+GGG | 0.570619 | 3_4:-71747346 | Msa0519540:CDS |
| GCACTTTCTGCTCCATGGGG+TGG | 0.574507 | 3_4:-71747393 | Msa0519540:CDS |
| AGGAAGTAGAACCAAAGCTA+GGG | 0.574724 | 3_4:+71751540 | None:intergenic |
| AGACCATATCGAAAATCATA+GGG | 0.574772 | 3_4:+71747612 | None:intergenic |
| AGGATTAAGATAAAGAAGAG+AGG | 0.580569 | 3_4:+71751520 | None:intergenic |
| GAACTTCTGAGAGTAACCTA+TGG | 0.593616 | 3_4:-71747284 | Msa0519540:CDS |
| CCAACTTGAGATGGGTGACC+TGG | 0.599702 | 3_4:+71747582 | None:intergenic |
| AAAGCAAGCAATTCCAATGG+AGG | 0.603247 | 3_4:-71747522 | Msa0519540:CDS |
| CACGTTGACACTGTTAGTGA+TGG | 0.607371 | 3_4:-71751870 | Msa0519540:CDS |
| CCAGGTCACCCATCTCAAGT+TGG | 0.608401 | 3_4:-71747582 | Msa0519540:CDS |
| TGGTGACGGAACTGTGAACA+TGG | 0.612065 | 3_4:-71746986 | Msa0519540:CDS |
| TGTTTGGTTTCACTCAAACA+TGG | 0.613422 | 3_4:+71751983 | None:intergenic |
| ACTTGTGTAGGCTTGTCACA+GGG | 0.624634 | 3_4:-71747704 | Msa0519540:intron |
| AAGCAAGCAATTCCAATGGA+GGG | 0.626020 | 3_4:-71747521 | Msa0519540:CDS |
| ATAGCACTTTCTGCTCCATG+GGG | 0.637994 | 3_4:-71747396 | Msa0519540:CDS |
| ATACTAATACCAGGTAATGG+AGG | 0.656510 | 3_4:-71751785 | Msa0519540:CDS |
| AATCCAGTTATACTAATACC+AGG | 0.657173 | 3_4:-71751794 | Msa0519540:CDS |
| AAATAAACTTACTTAAGACG+AGG | 0.677738 | 3_4:+71751500 | None:intergenic |
| CATTTGATGAGAAATGATCG+TGG | 0.720069 | 3_4:-71746777 | Msa0519540:exon |
| AAAGGGTGTGAAGACTCCAG+AGG | 0.728760 | 3_4:-71747064 | Msa0519540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAAATATTAAAAAATT+CGG | + | chr3_4:71749351-71749370 | None:intergenic | 0.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | - | chr3_4:71747412-71747431 | Msa0519540:CDS | 10.0% |
| !!! | AATTGTTTTTTTTTTTGAAA+TGG | - | chr3_4:71747475-71747494 | Msa0519540:CDS | 10.0% |
| !!! | AAAAAAAAAATTTTTGGAAA+TGG | + | chr3_4:71747528-71747547 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr3_4:71747412-71747431 | None:intergenic | 10.0% |
| !!! | TTTTCAAATTTTTTTTTACA+GGG | + | chr3_4:71748220-71748239 | None:intergenic | 10.0% |
| !!! | TTTTTCAAATTTTTTTTTAC+AGG | + | chr3_4:71748221-71748240 | None:intergenic | 10.0% |
| !!! | ATCTAAACTTTTTTTTTAAA+GGG | + | chr3_4:71748343-71748362 | None:intergenic | 10.0% |
| !!! | AATCTAAACTTTTTTTTTAA+AGG | + | chr3_4:71748344-71748363 | None:intergenic | 10.0% |
| !! | CTTAAAAATTTATAAAAATC+TGG | - | chr3_4:71748836-71748855 | Msa0519540:intron | 10.0% |
| !!! | TAAAAATTCTGAAAATAATA+AGG | + | chr3_4:71749132-71749151 | None:intergenic | 10.0% |
| !! | TTTCTTCATATTTAAAAAAA+GGG | + | chr3_4:71749703-71749722 | None:intergenic | 10.0% |
| !!! | TTTTCTTCATATTTAAAAAA+AGG | + | chr3_4:71749704-71749723 | None:intergenic | 10.0% |
| !! | TTAAATATGAAGAAAAAAAT+TGG | - | chr3_4:71749708-71749727 | Msa0519540:intron | 10.0% |
| !!! | TTTTCAAAGTTTTTTTTTTA+CGG | - | chr3_4:71750097-71750116 | Msa0519540:intron | 10.0% |
| !!! | CAAATATTTTCAATTTTTTT+TGG | + | chr3_4:71750362-71750381 | None:intergenic | 10.0% |
| !! | TTTATCTTTCAATTATTATA+TGG | - | chr3_4:71750545-71750564 | Msa0519540:intron | 10.0% |
| !! | TTATCTTTCAATTATTATAT+GGG | - | chr3_4:71750546-71750565 | Msa0519540:intron | 10.0% |
| !! | TTCTATAAAAAGTTATTATA+TGG | - | chr3_4:71750827-71750846 | Msa0519540:intron | 10.0% |
| !! | AGGAAATAAAACAAAATTTA+AGG | + | chr3_4:71747122-71747141 | None:intergenic | 15.0% |
| !! | ACTATAAAAAAAAAATTGCA+GGG | + | chr3_4:71747349-71747368 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAAATTGC+AGG | + | chr3_4:71747350-71747369 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | + | chr3_4:71747593-71747612 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | + | chr3_4:71747592-71747611 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAACAATTTTGCA+GGG | + | chr3_4:71747564-71747583 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAACAATTTTGC+AGG | + | chr3_4:71747471-71747490 | None:intergenic | 15.0% |
| !!! | CAAAAATTTTTTTTTTTGCA+GGG | - | chr3_4:71747532-71747551 | Msa0519540:CDS | 15.0% |
| !!! | AATTGTTTTTTTTTTGGAAA+TGG | + | chr3_4:71747559-71747578 | None:intergenic | 15.0% |
| !!! | TTGCAAAATTGTTTTTTTTT+TGG | + | chr3_4:71747565-71747584 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAACAATTTTGCA+AGG | - | chr3_4:71747564-71747583 | Msa0519540:CDS | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr3_4:71747592-71747611 | Msa0519540:CDS | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr3_4:71747593-71747612 | Msa0519540:CDS | 15.0% |
| !!! | CAAATTTTTTTTATAGGTTT+TGG | + | chr3_4:71747651-71747670 | None:intergenic | 15.0% |
| !! | AATTTATTTCCATATTTACA+GGG | + | chr3_4:71750070-71750089 | None:intergenic | 15.0% |
| !!! | GAAATTCCAATTTTTTTTAA+GGG | - | chr3_4:71748268-71748287 | Msa0519540:intron | 15.0% |
| !! | AAGGAAAAATAAAAAAATTC+TGG | + | chr3_4:71749113-71749132 | None:intergenic | 15.0% |
| !!! | AATCTAAACTTTTTTTTTAC+AGG | - | chr3_4:71749628-71749647 | Msa0519540:intron | 15.0% |
| !!! | ATCTAAACTTTTTTTTTACA+GGG | - | chr3_4:71749629-71749648 | Msa0519540:intron | 15.0% |
| !! | AATTTATTTCCATATTTACA+GGG | - | chr3_4:71750070-71750089 | Msa0519540:intron | 15.0% |
| !!! | TTTCAAAGTTTTTTTTTTAC+GGG | - | chr3_4:71750098-71750117 | Msa0519540:intron | 15.0% |
| !! | AACATTACTATATTATTGTA+AGG | + | chr3_4:71750855-71750874 | None:intergenic | 15.0% |
| !! | AAAATTAAATTTGCAGATAA+TGG | + | chr3_4:71751884-71751903 | None:intergenic | 15.0% |
| !! | TTCCTATATCAATAATAAAA+TGG | + | chr3_4:71751925-71751944 | None:intergenic | 15.0% |
| !!! | ATATTTTTTTATCGTGATGA+AGG | - | chr3_4:71746658-71746677 | Msa0519540:three_prime_UTR | 20.0% |
| !!! | ATACTGATTTCATATTTTCA+AGG | + | chr3_4:71747232-71747251 | None:intergenic | 20.0% |
| !!! | CCTGCAAAAAAAAAAATTTT+TGG | + | chr3_4:71747534-71747553 | None:intergenic | 20.0% |
| !!! | CCAAAAATTTTTTTTTTTGC+AGG | - | chr3_4:71747531-71747550 | Msa0519540:CDS | 20.0% |
| !! | AACCTATAAAAAAAATTTGC+AGG | - | chr3_4:71747652-71747671 | Msa0519540:CDS | 20.0% |
| !! | ACCTATAAAAAAAATTTGCA+GGG | - | chr3_4:71747653-71747672 | Msa0519540:CDS | 20.0% |
| !! | AAAAGATTTAACATTGATCA+TGG | + | chr3_4:71747853-71747872 | None:intergenic | 20.0% |
| !!! | ATGATCAATGTTAAATCTTT+TGG | - | chr3_4:71747852-71747871 | Msa0519540:intron | 20.0% |
| !!! | TGATCAATGTTAAATCTTTT+GGG | - | chr3_4:71747853-71747872 | Msa0519540:intron | 20.0% |
| !!! | TCAAATGATTAACTTTTACA+GGG | + | chr3_4:71748044-71748063 | None:intergenic | 20.0% |
| !!! | TTCAAATGATTAACTTTTAC+AGG | + | chr3_4:71748045-71748064 | None:intergenic | 20.0% |
| !! | CAATTTATTTCCATATTTAC+AGG | + | chr3_4:71750069-71750088 | None:intergenic | 20.0% |
| !! | CTGTAAATATGGAAATAAAT+TGG | - | chr3_4:71748246-71748265 | Msa0519540:intron | 20.0% |
| !!! | GGAAATTCCAATTTTTTTTA+AGG | - | chr3_4:71748267-71748286 | Msa0519540:intron | 20.0% |
| !! | TACTAACCCTTAAAAAAAAT+TGG | + | chr3_4:71748277-71748296 | None:intergenic | 20.0% |
| !! | CTGTAAATATGGAAATAAAT+TGG | + | chr3_4:71748246-71748265 | None:intergenic | 20.0% |
| !! | CAATTTATTTCCATATTTAC+AGG | - | chr3_4:71750069-71750088 | Msa0519540:intron | 20.0% |
| !!! | TTCAAAGTTTTTTTTTTACG+GGG | - | chr3_4:71750099-71750118 | Msa0519540:intron | 20.0% |
| !! | TTTACATCTATATAAAGCTA+CGG | - | chr3_4:71750683-71750702 | Msa0519540:intron | 20.0% |
| !!! | CTTTTTCTATCAAATTCTTT+AGG | + | chr3_4:71751041-71751060 | None:intergenic | 20.0% |
| !! | TTATCAATATCAAACATCTT+AGG | + | chr3_4:71751333-71751352 | None:intergenic | 20.0% |
| !!! | GTTGATTTTCTTAAAGATAT+TGG | - | chr3_4:71751399-71751418 | Msa0519540:intron | 20.0% |
| !! | TACTTGAAAGTTATTAAGAT+TGG | - | chr3_4:71751663-71751682 | Msa0519540:CDS | 20.0% |
| !!! | TGCCATTTTATTATTGATAT+AGG | - | chr3_4:71751920-71751939 | Msa0519540:exon | 20.0% |
| !!! | TTTCAAGTTTGATATTAGAA+TGG | - | chr3_4:71752012-71752031 | Msa0519540:five_prime_UTR | 20.0% |
| !!! | AAAATGGTTGGTTTAGATTA+TGG | - | chr3_4:71746900-71746919 | Msa0519540:CDS | 25.0% |
| ! | GTGCATTAAAAAAATCATCA+AGG | + | chr3_4:71747000-71747019 | None:intergenic | 25.0% |
| ! | AAATAAACTTACTTAAGACG+AGG | + | chr3_4:71747082-71747101 | None:intergenic | 25.0% |
| !!! | TTATTTCCTGTACTTTGTTT+TGG | - | chr3_4:71747133-71747152 | Msa0519540:CDS | 25.0% |
| !!! | ATTTCATATTTTCAAGGACT+TGG | + | chr3_4:71747226-71747245 | None:intergenic | 25.0% |
| !!! | TATCATTCATGTTAGTCTTT+TGG | - | chr3_4:71747274-71747293 | Msa0519540:CDS | 25.0% |
| !!! | TCCCTGCAAATTTTTTTTAT+AGG | + | chr3_4:71747657-71747676 | None:intergenic | 25.0% |
| ! | AAAAAGACTAGGCTAAAATA+TGG | + | chr3_4:71747717-71747736 | None:intergenic | 25.0% |
| !!! | TTTTAGCCTAGTCTTTTTTT+AGG | - | chr3_4:71747719-71747738 | Msa0519540:intron | 25.0% |
| ! | ATATTATCAAATTAGTCCGA+AGG | + | chr3_4:71747757-71747776 | None:intergenic | 25.0% |
| !! | GATCAATGTTAAATCTTTTG+GGG | - | chr3_4:71747854-71747873 | Msa0519540:intron | 25.0% |
| ! | ATCAAATAACCTATAATTGC+AGG | + | chr3_4:71747985-71748004 | None:intergenic | 25.0% |
| !! | CAAATGATTAACTTTTACAG+GGG | + | chr3_4:71748043-71748062 | None:intergenic | 25.0% |
| ! | ATCAAATTAGCAAAATGGTA+TGG | - | chr3_4:71748101-71748120 | Msa0519540:intron | 25.0% |
| ! | TCAAATTAGCAAAATGGTAT+GGG | - | chr3_4:71748102-71748121 | Msa0519540:intron | 25.0% |
| !!! | TTTTTTAAAGGGACTAAAAC+CGG | + | chr3_4:71748332-71748351 | None:intergenic | 25.0% |
| !!! | TTTTTTTTATTGTGCACACA+TGG | - | chr3_4:71748469-71748488 | Msa0519540:intron | 25.0% |
| ! | AGGAAGAATCTTAAATGTTA+GGG | - | chr3_4:71749601-71749620 | Msa0519540:intron | 25.0% |
| ! | AATCATATTTAAGCCATTCT+AGG | - | chr3_4:71750141-71750160 | Msa0519540:intron | 25.0% |
| !!! | GCTTATTTTTTTTCCTAGAA+TGG | + | chr3_4:71750157-71750176 | None:intergenic | 25.0% |
| ! | TCAAATTAGCAAAATGGTAT+GGG | + | chr3_4:71748102-71748121 | None:intergenic | 25.0% |
| ! | ATCAAATTAGCAAAATGGTA+TGG | + | chr3_4:71748101-71748120 | None:intergenic | 25.0% |
| !! | TTCAAACGATTAACTTTTAC+AGG | - | chr3_4:71750257-71750276 | Msa0519540:intron | 25.0% |
| !! | TCAAACGATTAACTTTTACA+GGG | - | chr3_4:71750258-71750277 | Msa0519540:intron | 25.0% |
| ! | GACGAGAAATTATAAATTGT+TGG | + | chr3_4:71750416-71750435 | None:intergenic | 25.0% |
| ! | CTTTCAATTATTATATGGGA+AGG | - | chr3_4:71750550-71750569 | Msa0519540:intron | 25.0% |
| !!! | ATCAAGAAAAGTGTTCATAT+AGG | + | chr3_4:71750606-71750625 | None:intergenic | 25.0% |
| !! | TATAGTAATGTTACTTGTGT+AGG | - | chr3_4:71750863-71750882 | Msa0519540:intron | 25.0% |
| ! | TGTTCTAATGATTCTACTAA+GGG | + | chr3_4:71750910-71750929 | None:intergenic | 25.0% |
| ! | ATATCAAACATCTTAGGATT+AGG | + | chr3_4:71751327-71751346 | None:intergenic | 25.0% |
| !! | TATGACTTGTATTATAGGAA+AGG | - | chr3_4:71751497-71751516 | Msa0519540:intron | 25.0% |
| !! | ATGACTTGTATTATAGGAAA+GGG | - | chr3_4:71751498-71751517 | Msa0519540:intron | 25.0% |
| ! | TTGAAAGTTATTAAGATTGG+TGG | - | chr3_4:71751666-71751685 | Msa0519540:CDS | 25.0% |
| ! | TGAAAGTTATTAAGATTGGT+GGG | - | chr3_4:71751667-71751686 | Msa0519540:CDS | 25.0% |
| ! | CTACAATTTCAAAACATCAA+TGG | + | chr3_4:71751988-71752007 | None:intergenic | 25.0% |
| GTATTAGTATAACTGGATTG+AGG | + | chr3_4:71746784-71746803 | None:intergenic | 30.0% | |
| AATCCAGTTATACTAATACC+AGG | - | chr3_4:71746785-71746804 | Msa0519540:CDS | 30.0% | |
| TTACCTGGTATTAGTATAAC+TGG | + | chr3_4:71746791-71746810 | None:intergenic | 30.0% | |
| GTTATACTAATACCAGGTAA+TGG | - | chr3_4:71746791-71746810 | Msa0519540:CDS | 30.0% | |
| GGTAGAAGGTTTATATTTAG+TGG | + | chr3_4:71746843-71746862 | None:intergenic | 30.0% | |
| ! | CATTTTTCTTCTTGAAAGGA+GGG | + | chr3_4:71746886-71746905 | None:intergenic | 30.0% |
| !! | CAACCATTTTTCTTCTTGAA+AGG | + | chr3_4:71746890-71746909 | None:intergenic | 30.0% |
| CTTTCAAGAAGAAAAATGGT+TGG | - | chr3_4:71746888-71746907 | Msa0519540:CDS | 30.0% | |
| !!! | GATGATTTTTTTAATGCACC+TGG | - | chr3_4:71747001-71747020 | Msa0519540:CDS | 30.0% |
| AGGATTAAGATAAAGAAGAG+AGG | + | chr3_4:71747062-71747081 | None:intergenic | 30.0% | |
| AAACTTCCAAAACAAAGTAC+AGG | + | chr3_4:71747142-71747161 | None:intergenic | 30.0% | |
| CATTATGAGATCATCCAATT+TGG | - | chr3_4:71747192-71747211 | Msa0519540:CDS | 30.0% | |
| !! | TTTTGGCTAAAACATGACAT+TGG | - | chr3_4:71747291-71747310 | Msa0519540:CDS | 30.0% |
| ACTTAGCCTAAAAAAAGACT+AGG | + | chr3_4:71747728-71747747 | None:intergenic | 30.0% | |
| ! | TAGGCTAAGTTTTTAACCTT+CGG | - | chr3_4:71747738-71747757 | Msa0519540:intron | 30.0% |
| !!! | TACCCTTTTTTTGTGTTAAC+CGG | + | chr3_4:71747946-71747965 | None:intergenic | 30.0% |
| CATTTCATACCTGCAATTAT+AGG | - | chr3_4:71747973-71747992 | Msa0519540:intron | 30.0% | |
| !!! | ATTTTGCTAATTTGATGACG+TGG | + | chr3_4:71750205-71750224 | None:intergenic | 30.0% |
| ACGTCATCAAATTAGCAAAA+TGG | - | chr3_4:71748096-71748115 | Msa0519540:intron | 30.0% | |
| ! | TTCTGGGAAAAAAAATAAGC+CGG | + | chr3_4:71748145-71748164 | None:intergenic | 30.0% |
| !!! | GCTTATTTTTTTTCCCAGAA+TGG | - | chr3_4:71748145-71748164 | Msa0519540:intron | 30.0% |
| AATCACATTTAAGCCATTCT+GGG | + | chr3_4:71748161-71748180 | None:intergenic | 30.0% | |
| AAATCACATTTAAGCCATTC+TGG | + | chr3_4:71748162-71748181 | None:intergenic | 30.0% | |
| GAAAAACATCCCTGTAAATA+TGG | - | chr3_4:71748235-71748254 | Msa0519540:intron | 30.0% | |
| TGGAAGAATCTCAAATGTTA+GGG | + | chr3_4:71748371-71748390 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTATTGTGGACACG+TGG | + | chr3_4:71749504-71749523 | None:intergenic | 30.0% |
| GAGGAAGAATCTTAAATGTT+AGG | - | chr3_4:71749600-71749619 | Msa0519540:intron | 30.0% | |
| GAAAAACATCCCTGTAAATA+TGG | + | chr3_4:71748235-71748254 | None:intergenic | 30.0% | |
| ! | CTTAAATATGATTTTCGTCC+CGG | + | chr3_4:71750134-71750153 | None:intergenic | 30.0% |
| TCTAGGAAAAAAAATAAGCC+AGG | - | chr3_4:71750158-71750177 | Msa0519540:intron | 30.0% | |
| CTAGGAAAAAAAATAAGCCA+GGG | - | chr3_4:71750159-71750178 | Msa0519540:intron | 30.0% | |
| TAGGAAAAAAAATAAGCCAG+GGG | - | chr3_4:71750160-71750179 | Msa0519540:intron | 30.0% | |
| ACGTCATCAAATTAGCAAAA+TGG | + | chr3_4:71748096-71748115 | None:intergenic | 30.0% | |
| !!! | ATTTTGCTAATTTGATGACG+TGG | - | chr3_4:71750205-71750224 | Msa0519540:intron | 30.0% |
| ! | CAAACGATTAACTTTTACAG+GGG | - | chr3_4:71750259-71750278 | Msa0519540:intron | 30.0% |
| ATCAAATGACCTATAATTGC+AGG | - | chr3_4:71750317-71750336 | Msa0519540:intron | 30.0% | |
| TCAAATGACCTATAATTGCA+GGG | - | chr3_4:71750318-71750337 | Msa0519540:intron | 30.0% | |
| TGCTAAAAGACTATACTGTT+TGG | - | chr3_4:71750380-71750399 | Msa0519540:intron | 30.0% | |
| TAATTTCTCGTCAATTTCGT+AGG | - | chr3_4:71750424-71750443 | Msa0519540:intron | 30.0% | |
| TTAGAACCTTGAAATTGTAG+GGG | + | chr3_4:71750471-71750490 | None:intergenic | 30.0% | |
| GTTAGAACCTTGAAATTGTA+GGG | + | chr3_4:71750472-71750491 | None:intergenic | 30.0% | |
| CTGTTCTAATGATTCTACTA+AGG | + | chr3_4:71750911-71750930 | None:intergenic | 30.0% | |
| ATAGATGGTGAAAATCTGTT+TGG | - | chr3_4:71750940-71750959 | Msa0519540:intron | 30.0% | |
| AGACCATATCGAAAATCATA+GGG | + | chr3_4:71750970-71750989 | None:intergenic | 30.0% | |
| TAGACCATATCGAAAATCAT+AGG | + | chr3_4:71750971-71750990 | None:intergenic | 30.0% | |
| TCAAATTCTTTAGGTCGTTT+AGG | + | chr3_4:71751032-71751051 | None:intergenic | 30.0% | |
| !! | GAAATGTTTACTTTTGCATC+AGG | - | chr3_4:71751219-71751238 | Msa0519540:intron | 30.0% |
| GTTCATTTCTTACTAGCAAA+GGG | + | chr3_4:71751272-71751291 | None:intergenic | 30.0% | |
| TGTTCATTTCTTACTAGCAA+AGG | + | chr3_4:71751273-71751292 | None:intergenic | 30.0% | |
| !!! | AAAGATATTGGTTTTCCAGA+AGG | - | chr3_4:71751411-71751430 | Msa0519540:intron | 30.0% |
| !!! | AAGATATTGGTTTTCCAGAA+GGG | - | chr3_4:71751412-71751431 | Msa0519540:intron | 30.0% |
| TTCCTATAAAACAATTCCTC+TGG | + | chr3_4:71751534-71751553 | None:intergenic | 30.0% | |
| !! | GAGGAATTGTTTTATAGGAA+TGG | - | chr3_4:71751534-71751553 | Msa0519540:CDS | 30.0% |
| GAAAGTTATTAAGATTGGTG+GGG | - | chr3_4:71751668-71751687 | Msa0519540:CDS | 30.0% | |
| GTTGCACTTGATGAAATAAT+TGG | - | chr3_4:71751720-71751739 | Msa0519540:CDS | 30.0% | |
| ATTAATTCTCATGCTCAACT+TGG | - | chr3_4:71751756-71751775 | Msa0519540:CDS | 30.0% | |
| ! | TGTTTGGTTTCACTCAAACA+TGG | + | chr3_4:71746599-71746618 | None:intergenic | 35.0% |
| !! | GTGAAGCTTTGGATAATGTT+TGG | + | chr3_4:71746615-71746634 | None:intergenic | 35.0% |
| !! | CTTTGTTTCTAGTGAAGCTT+TGG | + | chr3_4:71746626-71746645 | None:intergenic | 35.0% |
| ! | ATACTAATACCAGGTAATGG+AGG | - | chr3_4:71746794-71746813 | Msa0519540:CDS | 35.0% |
| !!! | TGGTTAGTTTTGCTTCTAGT+TGG | + | chr3_4:71746823-71746842 | None:intergenic | 35.0% |
| GGATCACAAATTAAGGTAGA+AGG | + | chr3_4:71746857-71746876 | None:intergenic | 35.0% | |
| !! | CTACCTTAATTTGTGATCCA+TGG | - | chr3_4:71746858-71746877 | Msa0519540:CDS | 35.0% |
| GTACCATGGATCACAAATTA+AGG | + | chr3_4:71746864-71746883 | None:intergenic | 35.0% | |
| !! | CCATTTTTCTTCTTGAAAGG+AGG | + | chr3_4:71746887-71746906 | None:intergenic | 35.0% |
| CCTCCTTTCAAGAAGAAAAA+TGG | - | chr3_4:71746884-71746903 | Msa0519540:CDS | 35.0% | |
| ! | GAAGCAAAACATTTGGTGAA+AGG | + | chr3_4:71746950-71746969 | None:intergenic | 35.0% |
| AGATCATCCAATTTGGTTGT+GGG | - | chr3_4:71747199-71747218 | Msa0519540:CDS | 35.0% | |
| CAAAACTGAGCATATTTGCA+GGG | + | chr3_4:71747379-71747398 | None:intergenic | 35.0% | |
| !! | AAATTTTTGGAAATGGTCCC+TGG | + | chr3_4:71747521-71747540 | None:intergenic | 35.0% |
| CAAAACTAGGCATATTTGCA+GGG | - | chr3_4:71747684-71747703 | Msa0519540:CDS | 35.0% | |
| ACTAGGCTAAAATATGGCAT+TGG | + | chr3_4:71747711-71747730 | None:intergenic | 35.0% | |
| TACCCGGTTAACACAAAAAA+AGG | - | chr3_4:71747940-71747959 | Msa0519540:intron | 35.0% | |
| ACCCGGTTAACACAAAAAAA+GGG | - | chr3_4:71747941-71747960 | Msa0519540:intron | 35.0% | |
| !!! | ACCCTTTTTTTGTGTTAACC+GGG | + | chr3_4:71747945-71747964 | None:intergenic | 35.0% |
| ! | TAACTTTTACAGGGGCAAAA+TGG | + | chr3_4:71750267-71750286 | None:intergenic | 35.0% |
| TTAGCAAAATGGTATGGGAA+TGG | - | chr3_4:71748107-71748126 | Msa0519540:intron | 35.0% | |
| TCTGGGAAAAAAAATAAGCC+GGG | + | chr3_4:71748144-71748163 | None:intergenic | 35.0% | |
| ! | TGATTTTCGTCCCTGTAATT+TGG | - | chr3_4:71748176-71748195 | Msa0519540:intron | 35.0% |
| ! | GATTTTCGTCCCTGTAATTT+GGG | - | chr3_4:71748177-71748196 | Msa0519540:intron | 35.0% |
| CAAAACTGACCCAAATTACA+GGG | + | chr3_4:71748189-71748208 | None:intergenic | 35.0% | |
| TCAAAACTGACCCAAATTAC+AGG | + | chr3_4:71748190-71748209 | None:intergenic | 35.0% | |
| ! | TCATTTTGCAGGGACTAAAA+GGG | + | chr3_4:71748301-71748320 | None:intergenic | 35.0% |
| GTGGAAGAATCTCAAATGTT+AGG | + | chr3_4:71748372-71748391 | None:intergenic | 35.0% | |
| TTAGCAAAATGGTATGGGAA+TGG | + | chr3_4:71748107-71748126 | None:intergenic | 35.0% | |
| ! | TAACTTTTACAGGGGCAAAA+TGG | - | chr3_4:71750267-71750286 | Msa0519540:intron | 35.0% |
| ! | AACTTTTACAGGGGCAAAAT+GGG | - | chr3_4:71750268-71750287 | Msa0519540:intron | 35.0% |
| CATTTCATCCCTGCAATTAT+AGG | + | chr3_4:71750329-71750348 | None:intergenic | 35.0% | |
| ACAATACCCCTACAATTTCA+AGG | - | chr3_4:71750462-71750481 | Msa0519540:intron | 35.0% | |
| GGTTAGAACCTTGAAATTGT+AGG | + | chr3_4:71750473-71750492 | None:intergenic | 35.0% | |
| ! | ACAATTTCAAGGTTCTAACC+TGG | - | chr3_4:71750473-71750492 | Msa0519540:intron | 35.0% |
| TTATCAATGAGTGTATCACC+AGG | + | chr3_4:71750494-71750513 | None:intergenic | 35.0% | |
| TGCATTAATCAGTGTTCTCA+TGG | - | chr3_4:71750770-71750789 | Msa0519540:intron | 35.0% | |
| ATTAATCAGTGTTCTCATGG+CGG | - | chr3_4:71750773-71750792 | Msa0519540:intron | 35.0% | |
| GTAGAATCATTAGAACAGCT+TGG | - | chr3_4:71750913-71750932 | Msa0519540:intron | 35.0% | |
| ! | ATTTGGAACCAACTTGAGAT+GGG | + | chr3_4:71751008-71751027 | None:intergenic | 35.0% |
| ! | AATTTGGAACCAACTTGAGA+TGG | + | chr3_4:71751009-71751028 | None:intergenic | 35.0% |
| CTTTAGGTCGTTTAGGAATT+TGG | + | chr3_4:71751025-71751044 | None:intergenic | 35.0% | |
| GAAAAAGCAAGCAATTCCAA+TGG | - | chr3_4:71751054-71751073 | Msa0519540:intron | 35.0% | |
| AAGAAGAAGGGTTTCGATTA+AGG | + | chr3_4:71751137-71751156 | None:intergenic | 35.0% | |
| TTAATCGAAACCCTTCTTCT+TGG | - | chr3_4:71751136-71751155 | Msa0519540:intron | 35.0% | |
| ! | TTTTGCATCAGGCAATACTT+TGG | - | chr3_4:71751230-71751249 | Msa0519540:intron | 35.0% |
| TTTGCATCAGGCAATACTTT+GGG | - | chr3_4:71751231-71751250 | Msa0519540:intron | 35.0% | |
| ACTAGCAAAGGGTTTACTAA+TGG | + | chr3_4:71751261-71751280 | None:intergenic | 35.0% | |
| !!! | AGATATTGGTTTTCCAGAAG+GGG | - | chr3_4:71751413-71751432 | Msa0519540:intron | 35.0% |
| GGTAAAATGCGAGTTTCATA+AGG | + | chr3_4:71751444-71751463 | None:intergenic | 35.0% | |
| ! | GCATCTATTTTCGCTATCAA+AGG | + | chr3_4:71751465-71751484 | None:intergenic | 35.0% |
| ! | GTGGCTATGACTTGTATTAT+AGG | - | chr3_4:71751492-71751511 | Msa0519540:intron | 35.0% |
| !! | CTCCAGAGGAATTGTTTTAT+AGG | - | chr3_4:71751529-71751548 | Msa0519540:CDS | 35.0% |
| !!! | CTTTTTTATGGTGATGGTGA+CGG | - | chr3_4:71751579-71751598 | Msa0519540:CDS | 35.0% |
| CATTTGATGAGAAATGATCG+TGG | - | chr3_4:71751802-71751821 | Msa0519540:CDS | 35.0% | |
| ! | GTTGTTGTTGCTTGTGCTAA+TGG | + | chr3_4:71746762-71746781 | None:intergenic | 40.0% |
| CATGCGAGAAGCAAAACATT+TGG | + | chr3_4:71746957-71746976 | None:intergenic | 40.0% | |
| AGGAAGTAGAACCAAAGCTA+GGG | + | chr3_4:71747042-71747061 | None:intergenic | 40.0% | |
| GAGATCATCCAATTTGGTTG+TGG | - | chr3_4:71747198-71747217 | Msa0519540:CDS | 40.0% | |
| CAAAACAGGGCATATTTGCA+GGG | + | chr3_4:71747318-71747337 | None:intergenic | 40.0% | |
| CAGGGACTAAAACCAAAACA+GGG | + | chr3_4:71747331-71747350 | None:intergenic | 40.0% | |
| CCAAAACTGAGCATATTTGC+AGG | + | chr3_4:71747380-71747399 | None:intergenic | 40.0% | |
| ! | CCTGCAAATATGCTCAGTTT+TGG | - | chr3_4:71747377-71747396 | Msa0519540:CDS | 40.0% |
| CAGGGACTAAAACCAAAACT+GGG | + | chr3_4:71747611-71747630 | None:intergenic | 40.0% | |
| CAAAACTGGCCATATTTGCA+GGG | - | chr3_4:71747624-71747643 | Msa0519540:CDS | 40.0% | |
| CAGGGACTAAAACCAAAACT+AGG | - | chr3_4:71747611-71747630 | Msa0519540:CDS | 40.0% | |
| ! | CCTGCAAATATGCCTAGTTT+TGG | + | chr3_4:71747686-71747705 | None:intergenic | 40.0% |
| CCAAAACTAGGCATATTTGC+AGG | - | chr3_4:71747683-71747702 | Msa0519540:CDS | 40.0% | |
| !! | GCAAGAGCATTTAAGTGAGA+TGG | - | chr3_4:71747781-71747800 | Msa0519540:intron | 40.0% |
| TTCAGCTTAACCAAAGATCC+TGG | - | chr3_4:71747816-71747835 | Msa0519540:intron | 40.0% | |
| TAGATTCGAACCAGGATCTT+TGG | + | chr3_4:71747829-71747848 | None:intergenic | 40.0% | |
| ! | TGGAAGGATTAGTAAGCTCA+GGG | + | chr3_4:71748015-71748034 | None:intergenic | 40.0% |
| ! | ATGGAAGGATTAGTAAGCTC+AGG | + | chr3_4:71748016-71748035 | None:intergenic | 40.0% |
| ! | TTTTACAGGGGCAAAATGGA+AGG | + | chr3_4:71748031-71748050 | None:intergenic | 40.0% |
| TGGGAAAAAAAATAAGCCGG+GGG | + | chr3_4:71748142-71748161 | None:intergenic | 40.0% | |
| CTGGGAAAAAAAATAAGCCG+GGG | + | chr3_4:71748143-71748162 | None:intergenic | 40.0% | |
| ! | CATTTTGCAGGGACTAAAAG+GGG | + | chr3_4:71748300-71748319 | None:intergenic | 40.0% |
| ! | CTCATTTTGCAGGGACTAAA+AGG | + | chr3_4:71748302-71748321 | None:intergenic | 40.0% |
| ! | GGAATTTCGCTCATTTTGCA+GGG | + | chr3_4:71748311-71748330 | None:intergenic | 40.0% |
| CTGCAAAATGAGCGAAATTC+CGG | - | chr3_4:71748310-71748329 | Msa0519540:intron | 40.0% | |
| TCATGTTGCAGGGACTAAAA+GGG | - | chr3_4:71749670-71749689 | Msa0519540:intron | 40.0% | |
| ! | TTTTACGGGGACGAAATTAC+CGG | - | chr3_4:71750112-71750131 | Msa0519540:intron | 40.0% |
| TGGGAAGGAATATAATGCAG+TGG | - | chr3_4:71750565-71750584 | Msa0519540:intron | 40.0% | |
| !! | TTCTCATGGCGGACAAAATA+GGG | - | chr3_4:71750784-71750803 | Msa0519540:intron | 40.0% |
| GAACAGCTTGGTTACATAGA+TGG | - | chr3_4:71750925-71750944 | Msa0519540:intron | 40.0% | |
| ! | GCTCCCTATGATTTTCGATA+TGG | - | chr3_4:71750964-71750983 | Msa0519540:intron | 40.0% |
| AAAGCAAGCAATTCCAATGG+AGG | - | chr3_4:71751057-71751076 | Msa0519540:intron | 40.0% | |
| AAGCAAGCAATTCCAATGGA+GGG | - | chr3_4:71751058-71751077 | Msa0519540:intron | 40.0% | |
| CTGTGTGAGACAAGTATTAC+TGG | + | chr3_4:71751087-71751106 | None:intergenic | 40.0% | |
| AATACTTGTCTCACACAGCT+TGG | - | chr3_4:71751089-71751108 | Msa0519540:intron | 40.0% | |
| ATACTTGTCTCACACAGCTT+GGG | - | chr3_4:71751090-71751109 | Msa0519540:intron | 40.0% | |
| GGTTTCGATTAAGGAGTTTG+AGG | + | chr3_4:71751128-71751147 | None:intergenic | 40.0% | |
| ATTTCTTGCGCCAAGAAGAA+GGG | + | chr3_4:71751149-71751168 | None:intergenic | 40.0% | |
| AATTTCTTGCGCCAAGAAGA+AGG | + | chr3_4:71751150-71751169 | None:intergenic | 40.0% | |
| TTATAGCACTTTCTGCTCCA+TGG | - | chr3_4:71751181-71751200 | Msa0519540:intron | 40.0% | |
| TATAGCACTTTCTGCTCCAT+GGG | - | chr3_4:71751182-71751201 | Msa0519540:intron | 40.0% | |
| TTGCATCAGGCAATACTTTG+GGG | - | chr3_4:71751232-71751251 | Msa0519540:intron | 40.0% | |
| ! | GAACTTCTGAGAGTAACCTA+TGG | - | chr3_4:71751295-71751314 | Msa0519540:intron | 40.0% |
| TAGGATTAGGCAAAAGCCAT+AGG | + | chr3_4:71751314-71751333 | None:intergenic | 40.0% | |
| TGCGCTGAATAGCTTCTATA+TGG | + | chr3_4:71751372-71751391 | None:intergenic | 40.0% | |
| AAGCTATTCAGCGCATGATA+TGG | - | chr3_4:71751377-71751396 | Msa0519540:intron | 40.0% | |
| TCATAAGGATAAACCCCTTC+TGG | + | chr3_4:71751429-71751448 | None:intergenic | 40.0% | |
| GATAGCGAAAATAGATGCAC+CGG | - | chr3_4:71751467-71751486 | Msa0519540:intron | 40.0% | |
| ATACAAGTCATAGCCACTTC+CGG | + | chr3_4:71751489-71751508 | None:intergenic | 40.0% | |
| ATCACCATAAAAAAGCTCCG+GGG | + | chr3_4:71751574-71751593 | None:intergenic | 40.0% | |
| CATCACCATAAAAAAGCTCC+GGG | + | chr3_4:71751575-71751594 | None:intergenic | 40.0% | |
| CCATCACCATAAAAAAGCTC+CGG | + | chr3_4:71751576-71751595 | None:intergenic | 40.0% | |
| TGTTGGCACTTGAATCTCTA+TGG | - | chr3_4:71751622-71751641 | Msa0519540:CDS | 40.0% | |
| AAAGCTAGTACTTGATGCGA+TGG | - | chr3_4:71751846-71751865 | Msa0519540:CDS | 40.0% | |
| CACGTTGACACTGTTAGTGA+TGG | - | chr3_4:71746709-71746728 | Msa0519540:three_prime_UTR | 45.0% | |
| ! | AGTTGGTTTCCTCCATTACC+TGG | + | chr3_4:71746806-71746825 | None:intergenic | 45.0% |
| !! | TTCTTGAAAGGAGGGTACCA+TGG | + | chr3_4:71746878-71746897 | None:intergenic | 45.0% |
| GAGGAAGTAGAACCAAAGCT+AGG | + | chr3_4:71747043-71747062 | None:intergenic | 45.0% | |
| ACTTGGTCCCACAACCAAAT+TGG | + | chr3_4:71747209-71747228 | None:intergenic | 45.0% | |
| CCAAAACAGGGCATATTTGC+AGG | + | chr3_4:71747319-71747338 | None:intergenic | 45.0% | |
| ! | CCTGCAAATATGCCCTGTTT+TGG | - | chr3_4:71747316-71747335 | Msa0519540:CDS | 45.0% |
| GCAGGGACTAAAACCAAAAC+AGG | + | chr3_4:71747610-71747629 | None:intergenic | 45.0% | |
| CAAAACTGGGCATATCTGCA+GGG | + | chr3_4:71747439-71747458 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr3_4:71747610-71747629 | None:intergenic | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | - | chr3_4:71747610-71747629 | Msa0519540:CDS | 45.0% | |
| ! | CCTGCAAATATGGCCAGTTT+TGG | + | chr3_4:71747626-71747645 | None:intergenic | 45.0% |
| CCAAAACTGGCCATATTTGC+AGG | - | chr3_4:71747623-71747642 | Msa0519540:CDS | 45.0% | |
| !! | GGTTTTGGTCCCTGCAAATA+TGG | + | chr3_4:71747636-71747655 | None:intergenic | 45.0% |
| ATCATGGCTAGATTCGAACC+AGG | + | chr3_4:71747837-71747856 | None:intergenic | 45.0% | |
| GAGAACTTTGCCACCAATTG+CGG | - | chr3_4:71747876-71747895 | Msa0519540:intron | 45.0% | |
| CACAAAGACTAATCCCTCGA+AGG | + | chr3_4:71747903-71747922 | None:intergenic | 45.0% | |
| CTTTGTGTAGTTGCGTGCAT+AGG | - | chr3_4:71747916-71747935 | Msa0519540:intron | 45.0% | |
| TGAAAATTCGTCCCTCTTCC+CGG | - | chr3_4:71748061-71748080 | Msa0519540:intron | 45.0% | |
| ATGACGTGGCAGTGATTAAC+CGG | + | chr3_4:71750219-71750238 | None:intergenic | 45.0% | |
| ! | CGGAATTTCGCTCATTTTGC+AGG | + | chr3_4:71748312-71748331 | None:intergenic | 45.0% |
| TTCAGGTGAGGGACTAAAAG+TGG | + | chr3_4:71748391-71748410 | None:intergenic | 45.0% | |
| ! | CATATTCTGCTGACTGGTTC+AGG | - | chr3_4:71749564-71749583 | Msa0519540:intron | 45.0% |
| CCTGCAACATGAGCGAATTT+CGG | + | chr3_4:71749662-71749681 | None:intergenic | 45.0% | |
| CGAAATTCGCTCATGTTGCA+GGG | - | chr3_4:71749660-71749679 | Msa0519540:intron | 45.0% | |
| CTCATGTTGCAGGGACTAAA+AGG | - | chr3_4:71749669-71749688 | Msa0519540:intron | 45.0% | |
| CATGTTGCAGGGACTAAAAG+GGG | - | chr3_4:71749671-71749690 | Msa0519540:intron | 45.0% | |
| TTTACGGGGACGAAATTACC+GGG | - | chr3_4:71750113-71750132 | Msa0519540:intron | 45.0% | |
| GGAATGGATGAAAATACCCC+TGG | + | chr3_4:71750179-71750198 | None:intergenic | 45.0% | |
| ATGACGTGGCAGTGATTAAC+CGG | - | chr3_4:71750219-71750238 | Msa0519540:intron | 45.0% | |
| ! | TTTTACAGGGGCAAAATGGG+AGG | - | chr3_4:71750271-71750290 | Msa0519540:intron | 45.0% |
| ! | ATGGGAGGATTAGTAAGCTC+AGG | - | chr3_4:71750286-71750305 | Msa0519540:intron | 45.0% |
| ! | TGGGAGGATTAGTAAGCTCA+GGG | - | chr3_4:71750287-71750306 | Msa0519540:intron | 45.0% |
| !! | GTTCTCATGGCGGACAAAAT+AGG | - | chr3_4:71750783-71750802 | Msa0519540:intron | 45.0% |
| TACTTGTGTAGGCTTGTCAC+AGG | - | chr3_4:71750874-71750893 | Msa0519540:intron | 45.0% | |
| ACTTGTGTAGGCTTGTCACA+GGG | - | chr3_4:71750875-71750894 | Msa0519540:intron | 45.0% | |
| !! | TATTACTGGCTTCCCTCCAT+TGG | + | chr3_4:71751073-71751092 | None:intergenic | 45.0% |
| ATAGCACTTTCTGCTCCATG+GGG | - | chr3_4:71751183-71751202 | Msa0519540:intron | 45.0% | |
| TGCATCAGGCAATACTTTGG+GGG | - | chr3_4:71751233-71751252 | Msa0519540:intron | 45.0% | |
| GAAAATAGATGCACCGGAAG+TGG | - | chr3_4:71751473-71751492 | Msa0519540:intron | 45.0% | |
| TCACCATAAAAAAGCTCCGG+GGG | + | chr3_4:71751573-71751592 | None:intergenic | 45.0% | |
| !!! | CCGGAGCTTTTTTATGGTGA+TGG | - | chr3_4:71751573-71751592 | Msa0519540:CDS | 45.0% |
| TGTGAACATGGTGAGCTTGT+TGG | - | chr3_4:71751605-71751624 | Msa0519540:CDS | 45.0% | |
| CTCATGCTCAACTTGGTCTA+AGG | - | chr3_4:71751763-71751782 | Msa0519540:CDS | 45.0% | |
| !! | TAAAAAAATATATAATTACT+GGG | + | chr3_4:71746649-71746668 | None:intergenic | 5.0% |
| !! | ATAAAAAAATATATAATTAC+TGG | + | chr3_4:71746650-71746669 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTATAGTTTT+TGG | - | chr3_4:71747352-71747371 | Msa0519540:CDS | 5.0% |
| !!! | AAGATTTTTATAAATTTTTA+AGG | - | chr3_4:71749173-71749192 | Msa0519540:intron | 5.0% |
| !!! | TATTTTTATTTTTTTTATTG+TGG | + | chr3_4:71749512-71749531 | None:intergenic | 5.0% |
| !!! | ATTACTTTTTTTTTTAAATA+TGG | - | chr3_4:71749733-71749752 | Msa0519540:intron | 5.0% |
| !! | AAAAATCATAAAAAAAAAAT+CGG | + | chr3_4:71749962-71749981 | None:intergenic | 5.0% |
| !!! | AAATATTTTCAATTTTTTTT+GGG | + | chr3_4:71750361-71750380 | None:intergenic | 5.0% |
| CCAAAACTGGGCATATCTGC+AGG | + | chr3_4:71747440-71747459 | None:intergenic | 50.0% | |
| ! | CCTGCAGATATGCCCAGTTT+TGG | - | chr3_4:71747437-71747456 | Msa0519540:CDS | 50.0% |
| AGTTGCGTGCATAGGATACC+CGG | - | chr3_4:71747924-71747943 | Msa0519540:intron | 50.0% | |
| GCAGTGATTAACCGGGAAGA+GGG | + | chr3_4:71750227-71750246 | None:intergenic | 50.0% | |
| TGACGTGGCAGTGATTAACC+GGG | + | chr3_4:71750220-71750239 | None:intergenic | 50.0% | |
| GGAATGGACGAAAATACCCC+CGG | - | chr3_4:71748123-71748142 | Msa0519540:intron | 50.0% | |
| ! | CAGATTCTGCTGACTGGTTC+AGG | + | chr3_4:71748408-71748427 | None:intergenic | 50.0% |
| CGTCAGCATATTCTGCTGAC+TGG | - | chr3_4:71749558-71749577 | Msa0519540:intron | 50.0% | |
| TTCAGGTGAGGGACTACAAG+AGG | - | chr3_4:71749581-71749600 | Msa0519540:intron | 50.0% | |
| CCGAAATTCGCTCATGTTGC+AGG | - | chr3_4:71749659-71749678 | Msa0519540:intron | 50.0% | |
| TGACGTGGCAGTGATTAACC+GGG | - | chr3_4:71750220-71750239 | Msa0519540:intron | 50.0% | |
| GCAGTGATTAACCGGGAAGA+GGG | - | chr3_4:71750227-71750246 | Msa0519540:intron | 50.0% | |
| TGATTAACCGGGAAGAGGGA+CGG | - | chr3_4:71750231-71750250 | Msa0519540:intron | 50.0% | |
| TGAAAATCCGTCCCTCTTCC+CGG | + | chr3_4:71750241-71750260 | None:intergenic | 50.0% | |
| TAGGCTTGTCACAGGGTACA+TGG | - | chr3_4:71750882-71750901 | Msa0519540:intron | 50.0% | |
| TCATCAACAGTTCCACCCCA+TGG | + | chr3_4:71751201-71751220 | None:intergenic | 50.0% | |
| ! | AAAGGGTGTGAAGACTCCAG+AGG | - | chr3_4:71751515-71751534 | Msa0519540:CDS | 50.0% |
| !! | TGGTGACGGAACTGTGAACA+TGG | - | chr3_4:71751593-71751612 | Msa0519540:CDS | 50.0% |
| GAGACACGTGTCCCTAGCTT+TGG | - | chr3_4:71747028-71747047 | Msa0519540:CDS | 55.0% | |
| CACCAATTGCGGTCCTTCGA+GGG | - | chr3_4:71747887-71747906 | Msa0519540:intron | 55.0% | |
| ATCCCTCGAAGGACCGCAAT+TGG | + | chr3_4:71747892-71747911 | None:intergenic | 55.0% | |
| GGCAGTGATTAACCGGGAAG+AGG | + | chr3_4:71750226-71750245 | None:intergenic | 55.0% | |
| ! | CTGCTGACTGGTTCAGGTGA+GGG | + | chr3_4:71749570-71749589 | None:intergenic | 55.0% |
| ! | TCTGCTGACTGGTTCAGGTG+AGG | + | chr3_4:71749569-71749588 | None:intergenic | 55.0% |
| CGTCAGCAGATTCTGCTGAC+TGG | + | chr3_4:71748414-71748433 | None:intergenic | 55.0% | |
| ! | TCTGCTGACTGGTTCAGGTG+AGG | - | chr3_4:71749569-71749588 | Msa0519540:intron | 55.0% |
| ! | CTGCTGACTGGTTCAGGTGA+GGG | - | chr3_4:71749570-71749589 | Msa0519540:intron | 55.0% |
| GGCAGTGATTAACCGGGAAG+AGG | - | chr3_4:71750226-71750245 | Msa0519540:intron | 55.0% | |
| CGATATGGTCTAGCTGCACC+AGG | - | chr3_4:71750979-71750998 | Msa0519540:intron | 55.0% | |
| CCAACTTGAGATGGGTGACC+TGG | + | chr3_4:71751000-71751019 | None:intergenic | 55.0% | |
| CCAGGTCACCCATCTCAAGT+TGG | - | chr3_4:71750997-71751016 | Msa0519540:intron | 55.0% | |
| CTTGTCTCACACAGCTTGGG+AGG | - | chr3_4:71751093-71751112 | Msa0519540:intron | 55.0% | |
| !! | TGGCGATTTTGATGAGCCCC+CGG | - | chr3_4:71751554-71751573 | Msa0519540:CDS | 55.0% |
| !!! | GAGCCCCCGGAGCTTTTTTA+TGG | - | chr3_4:71751567-71751586 | Msa0519540:CDS | 55.0% |
| GGGACACGTGTCTCAACTCC+AGG | + | chr3_4:71747022-71747041 | None:intergenic | 60.0% | |
| AAATGGTCCCTGTCCCCACG+TGG | - | chr3_4:71747492-71747511 | Msa0519540:CDS | 60.0% | |
| ATGGTCCCTGGCATCCACGT+GGG | + | chr3_4:71747509-71747528 | None:intergenic | 60.0% | |
| AATGGTCCCTGGCATCCACG+TGG | + | chr3_4:71747510-71747529 | None:intergenic | 60.0% | |
| CCTCGAAGGACCGCAATTGG+TGG | + | chr3_4:71747889-71747908 | None:intergenic | 60.0% | |
| CCACCAATTGCGGTCCTTCG+AGG | - | chr3_4:71747886-71747905 | Msa0519540:intron | 60.0% | |
| GCACTTTCTGCTCCATGGGG+TGG | - | chr3_4:71751186-71751205 | Msa0519540:intron | 60.0% | |
| CTGGCATCCACGTGGGGACA+GGG | + | chr3_4:71747502-71747521 | None:intergenic | 65.0% | |
| CTGTCCCCACGTGGATGCCA+GGG | - | chr3_4:71747501-71747520 | Msa0519540:CDS | 65.0% | |
| TGGTCCCTGGCATCCACGTG+GGG | + | chr3_4:71747508-71747527 | None:intergenic | 65.0% | |
| CCTGGCATCCACGTGGGGAC+AGG | + | chr3_4:71747503-71747522 | None:intergenic | 70.0% | |
| CCTGTCCCCACGTGGATGCC+AGG | - | chr3_4:71747500-71747519 | Msa0519540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 71746566 | 71752035 | 71746566 | ID=Msa0519540;Name=Msa0519540 |
| chr3_4 | mRNA | 71746566 | 71752035 | 71746566 | ID=Msa0519540-mRNA-1;Parent=Msa0519540;Name=Msa0519540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=108|1|1|1|1|1|2|217|449 |
| chr3_4 | exon | 71746566 | 71747716 | 71746566 | ID=Msa0519540-mRNA-1:exon:19691;Parent=Msa0519540-mRNA-1 |
| chr3_4 | exon | 71751512 | 71752035 | 71751512 | ID=Msa0519540-mRNA-1:exon:19690;Parent=Msa0519540-mRNA-1 |
| chr3_4 | five_prime_UTR | 71751928 | 71752035 | 71751928 | ID=Msa0519540-mRNA-1:five_prime_utr;Parent=Msa0519540-mRNA-1 |
| chr3_4 | CDS | 71751512 | 71751927 | 71751512 | ID=Msa0519540-mRNA-1:cds;Parent=Msa0519540-mRNA-1 |
| chr3_4 | CDS | 71746783 | 71747716 | 71746783 | ID=Msa0519540-mRNA-1:cds;Parent=Msa0519540-mRNA-1 |
| chr3_4 | three_prime_UTR | 71746566 | 71746782 | 71746566 | ID=Msa0519540-mRNA-1:three_prime_utr;Parent=Msa0519540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
