AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077330 MtrunA17_Chr1g0187091 95.365 561 26 0 1 561 1 561 0.0 1112
Msa0077330 MtrunA17_Chr5g0395051 35.314 303 133 8 207 462 94 380 7.07e-34 137
Msa0077330 MtrunA17_Chr5g0395051 58.750 80 33 0 1 80 9 88 3.41e-22 101
Msa0077330 MtrunA17_Chr6g0468301 55.000 80 36 0 1 80 9 88 1.05e-21 92.0
Msa0077330 MtrunA17_Chr6g0468291 43.478 92 49 2 335 424 3 93 1.65e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 142 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTGTATGCTTCTGTTTC+TGG 0.077711 1_2:-54215542 Msa0077330:five_prime_UTR
CTCATTTGATGGATAATTTA+AGG 0.100332 1_2:-54215053 Msa0077330:five_prime_UTR
TTAAATAAACATACCTATTT+AGG 0.154959 1_2:-54210318 Msa0077330:three_prime_UTR
AACAAATCTTCTACTATTTC+AGG 0.180626 1_2:-54213661 Msa0077330:intron
CGCAATTATCACTTCTTGTT+TGG 0.221275 1_2:+54212806 None:intergenic
GATGGTATTGGCTTGGGATT+TGG 0.227323 1_2:-54214928 Msa0077330:five_prime_UTR
ACAATATGTGGACTGAAAAT+TGG 0.244513 1_2:+54212560 None:intergenic
ATAAGAAAATGATAGGTTTC+TGG 0.247563 1_2:-54210564 Msa0077330:three_prime_UTR
GAATCTCTCAATCTCGAAAA+AGG 0.270101 1_2:+54212137 None:intergenic
GCCAGGATCTGGTGATAATT+TGG 0.270512 1_2:-54213827 Msa0077330:intron
ATGGTATTGGCTTGGGATTT+GGG 0.285962 1_2:-54214927 Msa0077330:five_prime_UTR
ACAGAAAGGAATACCTAAAT+AGG 0.287051 1_2:+54210305 None:intergenic
AATGAGTTGATTGTCATAAC+TGG 0.290846 1_2:-54215131 Msa0077330:five_prime_UTR
TTAAGACTGAAACCTTTATC+TGG 0.299755 1_2:+54214479 None:intergenic
TTTGTGAAATACTCATTTGA+TGG 0.304301 1_2:-54215064 Msa0077330:five_prime_UTR
ATGACTTCAAAACCAGTCTT+TGG 0.306670 1_2:+54214629 None:intergenic
CCTGTATCATGTTCTTGATA+TGG 0.316401 1_2:+54214224 None:intergenic
ATCCTCTATCTGAAATAGTT+TGG 0.324431 1_2:-54214505 Msa0077330:CDS
TCTTGATATGGTGTATATTC+TGG 0.346161 1_2:+54214236 None:intergenic
TGGCCTGATGGTATTGGCTT+GGG 0.347396 1_2:-54214934 Msa0077330:five_prime_UTR
TGTTTGTTGGCATTGTTTGA+TGG 0.368003 1_2:+54212076 None:intergenic
TTGATGAGACATTCTTGTTC+CGG 0.369355 1_2:+54212521 None:intergenic
AGCTAAAATATCTGAGATAA+TGG 0.370067 1_2:-54213692 Msa0077330:CDS
TCGGGTTGGCCTGATGGTAT+TGG 0.371402 1_2:-54214940 Msa0077330:five_prime_UTR
CCTTCTTTGTAATGTTTCCT+TGG 0.372511 1_2:+54213179 None:intergenic
AAAGTACACACCTCTTTGTT+TGG 0.378695 1_2:+54215718 None:intergenic
ATGAAACATCACATTAATAT+AGG 0.381042 1_2:+54215102 None:intergenic
ACATAAAAGATTCCAGTCTA+AGG 0.388544 1_2:+54215314 None:intergenic
ATAGTTTGGACTCCAGATAA+AGG 0.389342 1_2:-54214491 Msa0077330:CDS
TGCTGGAGGAACATCTGATT+TGG 0.391359 1_2:-54213791 Msa0077330:CDS
GTAAATTACCAACTGGACTT+TGG 0.394116 1_2:+54213249 None:intergenic
TCAAGATGAGGAGAAGTCTT+TGG 0.394857 1_2:-54212664 Msa0077330:CDS
CGACTCTCATTCTTATTGTA+TGG 0.395854 1_2:+54212885 None:intergenic
TTGGAGAAAATTAACTCTGC+TGG 0.405206 1_2:-54213808 Msa0077330:CDS
ATTCTCTTCAGTGTCAAGTT+AGG 0.410731 1_2:-54214874 Msa0077330:intron
TATTTCAGATAGAGGATCAT+TGG 0.411235 1_2:+54214511 None:intergenic
GAACACATGATTGAAGATAA+AGG 0.411777 1_2:-54213095 Msa0077330:CDS
ATGTTTGTTTCACGTGATCA+TGG 0.420997 1_2:-54215473 Msa0077330:five_prime_UTR
AAAATATTGTGAATTTAGTA+AGG 0.424454 1_2:+54215432 None:intergenic
GTGAGATGCATCTTATTTCA+AGG 0.425141 1_2:+54214965 None:intergenic
TGGTAGACTATTCTGTTTGT+TGG 0.430093 1_2:+54212063 None:intergenic
TCCATGTTTGCAAAGAGGTT+AGG 0.431116 1_2:-54212101 Msa0077330:CDS
TCATGTCAATTTCCTTAGAC+TGG 0.431825 1_2:-54215326 Msa0077330:five_prime_UTR
GACCCTTGTAAGGCCATTGA+AGG 0.432085 1_2:+54212613 None:intergenic
TTGGCCTGATGGTATTGGCT+TGG 0.432109 1_2:-54214935 Msa0077330:five_prime_UTR
ATCATCCGGCATTAATCATT+CGG 0.432649 1_2:-54213045 Msa0077330:CDS
CGATGTTGAACCTAGTAGTA+TGG 0.433354 1_2:-54214411 Msa0077330:CDS
TCATAGCTCATTCATGAACT+TGG 0.436526 1_2:-54212721 Msa0077330:CDS
GGAGAATTTAATGAACCATT+GGG 0.439177 1_2:-54213755 Msa0077330:CDS
GGCCATTGAAGGTGGCGATC+AGG 0.439496 1_2:+54212624 None:intergenic
TGAACTTGTAAATTACCAAC+TGG 0.441384 1_2:+54213242 None:intergenic
ATCCTGATCGCCACCTTCAA+TGG 0.442121 1_2:-54212626 Msa0077330:CDS
AGCTGCTTCAATTTCAATGC+AGG 0.443120 1_2:+54213711 None:intergenic
GTGTTCTTCTTTACATCCTC+AGG 0.443827 1_2:-54212463 Msa0077330:intron
GTCCAAACTATTTCAGATAG+AGG 0.446372 1_2:+54214503 None:intergenic
AGGAGAATTTAATGAACCAT+TGG 0.446595 1_2:-54213756 Msa0077330:CDS
TTCCAGAAACAGAAGCATAC+AGG 0.449645 1_2:+54215540 None:intergenic
TTGACGCGTTAATGCTTCAT+AGG 0.450951 1_2:-54215169 Msa0077330:five_prime_UTR
CTTCTCATCTTTAAGACCAA+TGG 0.453090 1_2:+54212205 None:intergenic
TTGTAATGTTTCCTTGGTGA+AGG 0.453555 1_2:+54213185 None:intergenic
AAAGAGGCTTGTTCTTCCAT+TGG 0.453603 1_2:-54212221 Msa0077330:CDS
GCATCGATACTTCTTATTGA+AGG 0.456704 1_2:-54215278 Msa0077330:five_prime_UTR
GGAACATATTTGATATCATC+CGG 0.456936 1_2:-54213059 Msa0077330:CDS
AATTTACAAGTTCATCAAGA+TGG 0.458602 1_2:-54213233 Msa0077330:CDS
CCACCTTCAATGGCCTTACA+AGG 0.462556 1_2:-54212616 Msa0077330:CDS
CCAAGGAAACATTACAAAGA+AGG 0.463419 1_2:-54213179 Msa0077330:CDS
TTGGTTTCAAACATGACTAA+AGG 0.464068 1_2:-54212702 Msa0077330:CDS
GATAAAGGTTCTAATCCTCT+TGG 0.465705 1_2:-54213080 Msa0077330:CDS
GGAACATCTGATTTGGCAAA+TGG 0.468310 1_2:-54213784 Msa0077330:CDS
GGACTGAAAATTGGATTTGA+AGG 0.473417 1_2:+54212569 None:intergenic
TCTGGAGCTTGACCCTTGTA+AGG 0.474736 1_2:+54212603 None:intergenic
ACAATATGCTGATAACCAAT+TGG 0.476134 1_2:-54212282 Msa0077330:CDS
TGATTTGGCAAATGGTCAAA+AGG 0.486780 1_2:-54213776 Msa0077330:CDS
GTGCTCCTACTCAAGGTCTC+AGG 0.488647 1_2:-54214901 Msa0077330:five_prime_UTR
CTTGAGTACTCAGCAGTAGA+AGG 0.489690 1_2:+54214680 None:intergenic
ACCAACAATTTCCGACAGAA+AGG 0.489958 1_2:+54210291 None:intergenic
TGTTTGTTTCACGTGATCAT+GGG 0.491716 1_2:-54215472 Msa0077330:five_prime_UTR
TCACACTCGGGTTGGCCTGA+TGG 0.502802 1_2:-54214946 Msa0077330:five_prime_UTR
GAAACATTACAAAGAAGGCT+TGG 0.503191 1_2:-54213174 Msa0077330:CDS
CTCAAAACACTGACAATATG+TGG 0.503790 1_2:+54212548 None:intergenic
CACAAATATTCTTCTCCCAA+TGG 0.514033 1_2:+54213740 None:intergenic
AATATCTGAGATAATGGAAG+AGG 0.514653 1_2:-54213686 Msa0077330:CDS
ATTGAGAGATTCAGAGGCAA+TGG 0.519119 1_2:-54212126 Msa0077330:CDS
AATCCCAAGCCAATACCATC+AGG 0.525771 1_2:+54214931 None:intergenic
CATTGGTCTTAAAGATGAGA+AGG 0.529065 1_2:-54212204 Msa0077330:CDS
TGGTGTATATTCTGGAAAGA+TGG 0.529676 1_2:+54214244 None:intergenic
ATTTACAAGTTCATCAAGAT+GGG 0.530667 1_2:-54213232 Msa0077330:CDS
TTATTCTAGTCAATGTCATA+AGG 0.530823 1_2:-54214600 Msa0077330:CDS
TGGGAGTGTGCTCCTACTCA+AGG 0.531589 1_2:-54214908 Msa0077330:five_prime_UTR
AAGAAAATGAAACCAAAGAC+TGG 0.532411 1_2:-54214641 Msa0077330:exon
TCGCTTGTTGAATTCCTAGC+AGG 0.535881 1_2:+54214275 None:intergenic
TAGCATCATCTCATTGACCT+TGG 0.536137 1_2:+54212908 None:intergenic
CCATATCAAGAACATGATAC+AGG 0.536521 1_2:-54214224 Msa0077330:intron
TATGAAAGAATATTAGTACA+TGG 0.541481 1_2:+54215570 None:intergenic
ACCTAACCTCTTTGCAAACA+TGG 0.543122 1_2:+54212100 None:intergenic
AAGTATACATAAATTGACTA+AGG 0.544426 1_2:+54215647 None:intergenic
AATAAGATGCATCTCACACT+CGG 0.548373 1_2:-54214959 Msa0077330:five_prime_UTR
AATATAGAATAGAAAAGATA+CGG 0.550149 1_2:+54215503 None:intergenic
TTCGAGATTGAGAGATTCAG+AGG 0.550691 1_2:-54212132 Msa0077330:CDS
CTAAGGAAATTGACATGACT+AGG 0.551663 1_2:+54215331 None:intergenic
AGAGCAAGAACCATACTACT+AGG 0.554225 1_2:+54214401 None:intergenic
AATGGAATTGTATATTGGGT+AGG 0.554982 1_2:+54210416 None:intergenic
ATTTAGGTATTCCTTTCTGT+CGG 0.556516 1_2:-54210302 Msa0077330:three_prime_UTR
AGATGGGTCTAAACTTAGCA+TGG 0.563633 1_2:-54213216 Msa0077330:CDS
TTGCAAACTGAGTCAAGTGC+AGG 0.567039 1_2:-54214572 Msa0077330:CDS
TGTACTGCAGGAAGACATCA+TGG 0.567554 1_2:-54210660 Msa0077330:intron
TTCAACATCGCGCAAAAGCG+AGG 0.569210 1_2:+54214424 None:intergenic
ATGGTGGTTGAAATAGAAGA+TGG 0.572650 1_2:-54213134 Msa0077330:CDS
TGGTTTCCATGTTTGCAAAG+AGG 0.574375 1_2:-54212106 Msa0077330:CDS
ACAAGAATGTCTCATCAAGT+AGG 0.578856 1_2:-54212516 Msa0077330:CDS
TGAGCTATGATGATTAACAT+AGG 0.579724 1_2:+54212734 None:intergenic
TTTGCGCATATAACAGCAAG+AGG 0.582464 1_2:+54214323 None:intergenic
ATTGGTCTTAAAGATGAGAA+GGG 0.585207 1_2:-54212203 Msa0077330:CDS
CTTCAACAGATACTCCTGCT+AGG 0.592036 1_2:-54214289 Msa0077330:CDS
GAGAAAATTAACTCTGCTGG+AGG 0.604426 1_2:-54213805 Msa0077330:CDS
CAGATCAACCAAAGTCCAGT+TGG 0.604525 1_2:-54213257 Msa0077330:CDS
GATGCATCTCACACTCGGGT+TGG 0.606974 1_2:-54214954 Msa0077330:five_prime_UTR
ATGAGTTGATTGTCATAACT+GGG 0.610790 1_2:-54215130 Msa0077330:five_prime_UTR
CCTTGTAAGGCCATTGAAGG+TGG 0.610795 1_2:+54212616 None:intergenic
AATTTGAGAAAATGAAGTAA+CGG 0.616414 1_2:+54215202 None:intergenic
GCGTCCGATCCGATGTGTGT+CGG 0.620727 1_2:-54215254 Msa0077330:five_prime_UTR
CAGCAACGTTAAATGAGTTG+AGG 0.626104 1_2:+54210626 None:intergenic
GGATACTAGTGTTGACAACA+TGG 0.626835 1_2:-54213153 Msa0077330:CDS
AAGAAGAACACCGTCTGCAG+AGG 0.634486 1_2:+54212475 None:intergenic
CAAGCAATAGCCTCTGCAGA+CGG 0.634882 1_2:-54212485 Msa0077330:CDS
GTTTGTTTCACGTGATCATG+GGG 0.636921 1_2:-54215471 Msa0077330:five_prime_UTR
AGATGAGAAGGGAAACAATG+AGG 0.641689 1_2:-54212192 Msa0077330:CDS
CTCACAATCTAGTCAAGATG+AGG 0.644826 1_2:-54212676 Msa0077330:CDS
ATTACGACACCGACACACAT+CGG 0.645224 1_2:+54215245 None:intergenic
ATCTTCTACAGGTTTATCTG+TGG 0.647818 1_2:+54214358 None:intergenic
TCAAGCCATGTTTACCTGTG+TGG 0.651284 1_2:+54212043 None:intergenic
CACCTTCAATGGCCTTACAA+GGG 0.652263 1_2:-54212615 Msa0077330:CDS
GACACCGACACACATCGGAT+CGG 0.654809 1_2:+54215250 None:intergenic
TATTTCCTAACCAAACAAAG+AGG 0.654876 1_2:-54215728 None:intergenic
TCGAACCTGAGACCTTGAGT+AGG 0.655490 1_2:+54214896 None:intergenic
ATAAGATGCATCTCACACTC+GGG 0.659150 1_2:-54214958 Msa0077330:five_prime_UTR
TGTTTCTGGAAATTCTACCA+CGG 0.659691 1_2:-54215528 Msa0077330:five_prime_UTR
GATATCAAATATGTTCCAAG+AGG 0.664662 1_2:+54213065 None:intergenic
AACAGAATAGTCTACCACAC+AGG 0.676350 1_2:-54212057 Msa0077330:intron
ATAGAAAAGATACGGTACCG+TGG 0.710931 1_2:+54215511 None:intergenic
TGGAACAAAATCCTTCACCA+AGG 0.714111 1_2:-54213196 Msa0077330:CDS
TACTAGTGTTGACAACATGG+TGG 0.817206 1_2:-54213150 Msa0077330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATACTCTTTTAATAAAT+TGG + chr1_2:54212046-54212065 None:intergenic 10.0%
!! AATATAGAATAGAAAAGATA+CGG + chr1_2:54210518-54210537 None:intergenic 15.0%
!! AAAATATTGTGAATTTAGTA+AGG + chr1_2:54210589-54210608 None:intergenic 15.0%
!! AAATTACTTGATTGAATTAT+AGG + chr1_2:54211232-54211251 None:intergenic 15.0%
!!! AAAAATGTTTCAACTTTTAA+AGG + chr1_2:54212149-54212168 None:intergenic 15.0%
!!! TCTATTAGTATTTTTTTTGT+TGG - chr1_2:54214533-54214552 Msa0077330:CDS 15.0%
!!! CTATTAGTATTTTTTTTGTT+GGG - chr1_2:54214534-54214553 Msa0077330:CDS 15.0%
!! AGATATAATTCAATAACAAA+TGG + chr1_2:54214728-54214747 None:intergenic 15.0%
!! AATATCTATAATCGAATAAA+GGG + chr1_2:54215250-54215269 None:intergenic 15.0%
!! AAATATCTATAATCGAATAA+AGG + chr1_2:54215251-54215270 None:intergenic 15.0%
!! ATCAAAAATAAGAAAATGAT+AGG - chr1_2:54215447-54215466 Msa0077330:five_prime_UTR 15.0%
!! AAATAGAAACAATTCAAAAA+TGG + chr1_2:54215623-54215642 None:intergenic 15.0%
!! TTAAATAAACATACCTATTT+AGG - chr1_2:54215700-54215719 Msa0077330:five_prime_UTR 15.0%
!!! CTCTTTCAATTTTCTATTTT+CGG - chr1_2:54210332-54210351 Msa0077330:three_prime_UTR 20.0%
!! AAGTATACATAAATTGACTA+AGG + chr1_2:54210374-54210393 None:intergenic 20.0%
!! TATGAAAGAATATTAGTACA+TGG + chr1_2:54210451-54210470 None:intergenic 20.0%
!! AATTTGAGAAAATGAAGTAA+CGG + chr1_2:54210819-54210838 None:intergenic 20.0%
!! ATGAAACATCACATTAATAT+AGG + chr1_2:54210919-54210938 None:intergenic 20.0%
!! AATTCAATCAAGTAATTTGA+TGG - chr1_2:54211234-54211253 Msa0077330:intron 20.0%
!! ATCATGATAGTATCTTAAAA+TGG + chr1_2:54212420-54212439 None:intergenic 20.0%
!!! TTTAAGATACTATCATGATT+TGG - chr1_2:54212421-54212440 Msa0077330:intron 20.0%
!!! ATATAAATTTTCCTCAATCA+TGG - chr1_2:54212482-54212501 Msa0077330:CDS 20.0%
!!! GGATTTGTTTTTATTATCAT+TGG + chr1_2:54213092-54213111 None:intergenic 20.0%
!! TGATAATAAAAACAAATCCA+AGG - chr1_2:54213093-54213112 Msa0077330:CDS 20.0%
!!! TCATAATACTGAATTGTTTT+TGG - chr1_2:54213174-54213193 Msa0077330:CDS 20.0%
!! TTTACAAAATAGAATCAGTA+AGG - chr1_2:54213643-54213662 Msa0077330:intron 20.0%
!! ATGATTGTTATCTGAAAAAT+AGG - chr1_2:54214038-54214057 Msa0077330:intron 20.0%
!! AATATGACATCACAAAAAAA+TGG + chr1_2:54214833-54214852 None:intergenic 20.0%
!!! TTACGGTATTGAATAATTTT+TGG + chr1_2:54215118-54215137 None:intergenic 20.0%
!! TATTACAATTTACATGAACA+TGG - chr1_2:54215279-54215298 Msa0077330:five_prime_UTR 20.0%
!! CAAAAATGGAATTGTATATT+GGG + chr1_2:54215609-54215628 None:intergenic 20.0%
!! TCAAAAATGGAATTGTATAT+TGG + chr1_2:54215610-54215629 None:intergenic 20.0%
! TTTGTGAAATACTCATTTGA+TGG - chr1_2:54210954-54210973 Msa0077330:intron 25.0%
!! CTCATTTGATGGATAATTTA+AGG - chr1_2:54210965-54210984 Msa0077330:intron 25.0%
! TTGGAACAATATTTCATTTC+AGG - chr1_2:54211314-54211333 Msa0077330:intron 25.0%
! TTATTCTAGTCAATGTCATA+AGG - chr1_2:54211418-54211437 Msa0077330:intron 25.0%
! ATTAATTAAAGTGACACTAG+TGG + chr1_2:54212006-54212025 None:intergenic 25.0%
!! AGCTAAAATATCTGAGATAA+TGG - chr1_2:54212326-54212345 Msa0077330:intron 25.0%
! AACAAATCTTCTACTATTTC+AGG - chr1_2:54212357-54212376 Msa0077330:intron 25.0%
! TTTAGATATGCAAAAGAGAA+TGG + chr1_2:54212711-54212730 None:intergenic 25.0%
! AATTTACAAGTTCATCAAGA+TGG - chr1_2:54212785-54212804 Msa0077330:CDS 25.0%
! ATTTACAAGTTCATCAAGAT+GGG - chr1_2:54212786-54212805 Msa0077330:CDS 25.0%
! CATTAATCATTCGGAAAAAA+TGG - chr1_2:54212982-54213001 Msa0077330:CDS 25.0%
!! TTGAAGGAATTTTTAATCTC+TGG + chr1_2:54213436-54213455 None:intergenic 25.0%
! TGGCTATTGAGAAAATTTAT+AGG + chr1_2:54213586-54213605 None:intergenic 25.0%
! CAGTAATTCAAATGAGAAAT+TGG + chr1_2:54213695-54213714 None:intergenic 25.0%
!!! GAATTGTTTTATCAACAAAG+AGG - chr1_2:54213781-54213800 Msa0077330:CDS 25.0%
!!! CACATTATTGATTTACTTCA+TGG + chr1_2:54214018-54214037 None:intergenic 25.0%
! TTGATTCTATGACAATAAGA+AGG - chr1_2:54214165-54214184 Msa0077330:intron 25.0%
! AAAAATGGATATCTATGTGT+TGG + chr1_2:54214818-54214837 None:intergenic 25.0%
!! ATGTCATATTCATCTTTTTG+TGG - chr1_2:54214843-54214862 Msa0077330:intron 25.0%
!! ATATTCATCTTTTTGTGGTT+TGG - chr1_2:54214848-54214867 Msa0077330:intron 25.0%
!! GACATGTGAAAGTATATATT+AGG - chr1_2:54214870-54214889 Msa0077330:intron 25.0%
! TTTGATCTGCTAAAAAATGA+AGG - chr1_2:54214898-54214917 Msa0077330:five_prime_UTR 25.0%
! TTTATTTGTAAAACTGCTTC+AGG - chr1_2:54214952-54214971 Msa0077330:five_prime_UTR 25.0%
! TTATTTGTAAAACTGCTTCA+GGG - chr1_2:54214953-54214972 Msa0077330:five_prime_UTR 25.0%
!!! GTTTTAGAAAACTTGTATGT+GGG + chr1_2:54215057-54215076 None:intergenic 25.0%
!!! TGTTTTAGAAAACTTGTATG+TGG + chr1_2:54215058-54215077 None:intergenic 25.0%
!! CAACACAAGACAAAATTTTA+CGG + chr1_2:54215135-54215154 None:intergenic 25.0%
!!! GGATATCAACTTTTTTGTTT+TGG - chr1_2:54215300-54215319 Msa0077330:five_prime_UTR 25.0%
! ATAAGAAAATGATAGGTTTC+TGG - chr1_2:54215454-54215473 Msa0077330:five_prime_UTR 25.0%
!!! ATCAAGACTTTTTTCAACAA+GGG + chr1_2:54215661-54215680 None:intergenic 25.0%
ACATAAAAGATTCCAGTCTA+AGG + chr1_2:54210707-54210726 None:intergenic 30.0%
!! AATGAGTTGATTGTCATAAC+TGG - chr1_2:54210887-54210906 Msa0077330:intron 30.0%
!! ATGAGTTGATTGTCATAACT+GGG - chr1_2:54210888-54210907 Msa0077330:intron 30.0%
! AATCAAAATTAGCCTGTGTA+GGG + chr1_2:54211296-54211315 None:intergenic 30.0%
AAGAAAATGAAACCAAAGAC+TGG - chr1_2:54211377-54211396 Msa0077330:intron 30.0%
TATTTCAGATAGAGGATCAT+TGG + chr1_2:54211510-54211529 None:intergenic 30.0%
! ATCCTCTATCTGAAATAGTT+TGG - chr1_2:54211513-54211532 Msa0077330:intron 30.0%
TTAAGACTGAAACCTTTATC+TGG + chr1_2:54211542-54211561 None:intergenic 30.0%
TCTTGATATGGTGTATATTC+TGG + chr1_2:54211785-54211804 None:intergenic 30.0%
GGTAAATATAACATCCCTTA+TGG - chr1_2:54211815-54211834 Msa0077330:intron 30.0%
AGGAGAATTTAATGAACCAT+TGG - chr1_2:54212262-54212281 Msa0077330:CDS 30.0%
GGAGAATTTAATGAACCATT+GGG - chr1_2:54212263-54212282 Msa0077330:CDS 30.0%
!! AATATCTGAGATAATGGAAG+AGG - chr1_2:54212332-54212351 Msa0077330:intron 30.0%
! TGCTGTCATAATTGATTCTT+TGG - chr1_2:54212384-54212403 Msa0077330:intron 30.0%
!! GGATTTATTTTCCATGATTG+AGG + chr1_2:54212496-54212515 None:intergenic 30.0%
CTTTGATATGCAGTGTTAAT+TGG + chr1_2:54212517-54212536 None:intergenic 30.0%
CAATTAACACTGCATATCAA+AGG - chr1_2:54212515-54212534 Msa0077330:CDS 30.0%
TGAACTTGTAAATTACCAAC+TGG + chr1_2:54212779-54212798 None:intergenic 30.0%
GAACACATGATTGAAGATAA+AGG - chr1_2:54212923-54212942 Msa0077330:CDS 30.0%
GATATCAAATATGTTCCAAG+AGG + chr1_2:54212956-54212975 None:intergenic 30.0%
GGAACATATTTGATATCATC+CGG - chr1_2:54212959-54212978 Msa0077330:CDS 30.0%
! TTTTTCCGAATGATTAATGC+CGG + chr1_2:54212981-54213000 None:intergenic 30.0%
!!! CTGAATTGTTTTTGGCAAAT+CGG - chr1_2:54213182-54213201 Msa0077330:CDS 30.0%
TGAGCTATGATGATTAACAT+AGG + chr1_2:54213287-54213306 None:intergenic 30.0%
TTGGTTTCAAACATGACTAA+AGG - chr1_2:54213316-54213335 Msa0077330:intron 30.0%
! ACAATATGTGGACTGAAAAT+TGG + chr1_2:54213461-54213480 None:intergenic 30.0%
!! GTGATATTTTTCAGTGTTCA+TGG + chr1_2:54213606-54213625 None:intergenic 30.0%
TTCTCATTTGAATTACTGCA+AGG - chr1_2:54213697-54213716 Msa0077330:CDS 30.0%
ACAATATGCTGATAACCAAT+TGG - chr1_2:54213736-54213755 Msa0077330:CDS 30.0%
! TTTTAGTCTCAATGACCAAT+TGG + chr1_2:54213754-54213773 None:intergenic 30.0%
!! ATTGGTCTTAAAGATGAGAA+GGG - chr1_2:54213815-54213834 Msa0077330:CDS 30.0%
GATCATTGACAACAATTGTA+GGG + chr1_2:54214288-54214307 None:intergenic 30.0%
ACTTTATTAAGTCTGTGTTG+TGG - chr1_2:54214592-54214611 Msa0077330:CDS 30.0%
ATATGACTTTATCCTTCAAG+TGG - chr1_2:54214682-54214701 Msa0077330:five_prime_UTR 30.0%
ACATATGTGATACAACACTT+TGG + chr1_2:54214768-54214787 None:intergenic 30.0%
!!! TACGATTTTTTGTGGACAAA+AGG + chr1_2:54215090-54215109 None:intergenic 30.0%
!!! TGGTCTTATACGATTTTTTG+TGG + chr1_2:54215098-54215117 None:intergenic 30.0%
!!! ACTTTTTTCAACAAGTCTGA+AGG + chr1_2:54215184-54215203 None:intergenic 30.0%
AATGGAATTGTATATTGGGT+AGG + chr1_2:54215605-54215624 None:intergenic 30.0%
!!! TCAAGACTTTTTTCAACAAG+GGG + chr1_2:54215660-54215679 None:intergenic 30.0%
!!! CATCAAGACTTTTTTCAACA+AGG + chr1_2:54215662-54215681 None:intergenic 30.0%
ACAGAAAGGAATACCTAAAT+AGG + chr1_2:54215716-54215735 None:intergenic 30.0%
ATTTAGGTATTCCTTTCTGT+CGG - chr1_2:54215716-54215735 Msa0077330:five_prime_UTR 30.0%
AAAGTACACACCTCTTTGTT+TGG + chr1_2:54210303-54210322 None:intergenic 35.0%
!! TGTTTCTGGAAATTCTACCA+CGG - chr1_2:54210490-54210509 Msa0077330:intron 35.0%
ATGTTTGTTTCACGTGATCA+TGG - chr1_2:54210545-54210564 Msa0077330:three_prime_UTR 35.0%
TGTTTGTTTCACGTGATCAT+GGG - chr1_2:54210546-54210565 Msa0077330:three_prime_UTR 35.0%
CTAAGGAAATTGACATGACT+AGG + chr1_2:54210690-54210709 None:intergenic 35.0%
TCATGTCAATTTCCTTAGAC+TGG - chr1_2:54210692-54210711 Msa0077330:intron 35.0%
! CTGGAATCTTTTATGTTCAG+AGG - chr1_2:54210711-54210730 Msa0077330:intron 35.0%
! GCATCGATACTTCTTATTGA+AGG - chr1_2:54210740-54210759 Msa0077330:intron 35.0%
! GTGAGATGCATCTTATTTCA+AGG + chr1_2:54211056-54211075 None:intergenic 35.0%
AATAAGATGCATCTCACACT+CGG - chr1_2:54211059-54211078 Msa0077330:intron 35.0%
ATTCTCTTCAGTGTCAAGTT+AGG - chr1_2:54211144-54211163 Msa0077330:intron 35.0%
! TTTGATGGTTTAGTGTTGAG+TGG - chr1_2:54211249-54211268 Msa0077330:intron 35.0%
! CAATCAAAATTAGCCTGTGT+AGG + chr1_2:54211297-54211316 None:intergenic 35.0%
!! CTACACAGGCTAATTTTGAT+TGG - chr1_2:54211295-54211314 Msa0077330:intron 35.0%
ATGACTTCAAAACCAGTCTT+TGG + chr1_2:54211392-54211411 None:intergenic 35.0%
GTCCAAACTATTTCAGATAG+AGG + chr1_2:54211518-54211537 None:intergenic 35.0%
ATAGTTTGGACTCCAGATAA+AGG - chr1_2:54211527-54211546 Msa0077330:intron 35.0%
ATCTTCTACAGGTTTATCTG+TGG + chr1_2:54211663-54211682 None:intergenic 35.0%
TGCACAAAAACATCTTCTAC+AGG + chr1_2:54211674-54211693 None:intergenic 35.0%
! TGGTGTATATTCTGGAAAGA+TGG + chr1_2:54211777-54211796 None:intergenic 35.0%
CCTGTATCATGTTCTTGATA+TGG + chr1_2:54211797-54211816 None:intergenic 35.0%
CCATATCAAGAACATGATAC+AGG - chr1_2:54211794-54211813 Msa0077330:intron 35.0%
TACATCTGTAGGATCCATAA+GGG + chr1_2:54211832-54211851 None:intergenic 35.0%
TTATGGATCCTACAGATGTA+GGG - chr1_2:54211832-54211851 Msa0077330:intron 35.0%
TGAGTTTGCAGTAAGAACTT+TGG - chr1_2:54211860-54211879 Msa0077330:intron 35.0%
! GAAGTATTTACTTTGTCACG+AGG - chr1_2:54211901-54211920 Msa0077330:intron 35.0%
! GATTTGAATTTTGTCCCTTC+AGG + chr1_2:54211960-54211979 None:intergenic 35.0%
ATAGTTCATTGCGACGTATT+AGG - chr1_2:54212093-54212112 Msa0077330:CDS 35.0%
TTGGAGAAAATTAACTCTGC+TGG - chr1_2:54212210-54212229 Msa0077330:CDS 35.0%
! TGATTTGGCAAATGGTCAAA+AGG - chr1_2:54212242-54212261 Msa0077330:CDS 35.0%
CACAAATATTCTTCTCCCAA+TGG + chr1_2:54212281-54212300 None:intergenic 35.0%
GTAAATTACCAACTGGACTT+TGG + chr1_2:54212772-54212791 None:intergenic 35.0%
TTGTAATGTTTCCTTGGTGA+AGG + chr1_2:54212836-54212855 None:intergenic 35.0%
CCTTCTTTGTAATGTTTCCT+TGG + chr1_2:54212842-54212861 None:intergenic 35.0%
CCAAGGAAACATTACAAAGA+AGG - chr1_2:54212839-54212858 Msa0077330:CDS 35.0%
GAAACATTACAAAGAAGGCT+TGG - chr1_2:54212844-54212863 Msa0077330:CDS 35.0%
ATGGTGGTTGAAATAGAAGA+TGG - chr1_2:54212884-54212903 Msa0077330:CDS 35.0%
! GATAAAGGTTCTAATCCTCT+TGG - chr1_2:54212938-54212957 Msa0077330:CDS 35.0%
ATCATCCGGCATTAATCATT+CGG - chr1_2:54212973-54212992 Msa0077330:CDS 35.0%
CGACTCTCATTCTTATTGTA+TGG + chr1_2:54213136-54213155 None:intergenic 35.0%
CGCAATTATCACTTCTTGTT+TGG + chr1_2:54213215-54213234 None:intergenic 35.0%
TCATAGCTCATTCATGAACT+TGG - chr1_2:54213297-54213316 Msa0077330:intron 35.0%
GGACTGAAAATTGGATTTGA+AGG + chr1_2:54213452-54213471 None:intergenic 35.0%
CTCAAAACACTGACAATATG+TGG + chr1_2:54213473-54213492 None:intergenic 35.0%
TTGATGAGACATTCTTGTTC+CGG + chr1_2:54213500-54213519 None:intergenic 35.0%
ACAAGAATGTCTCATCAAGT+AGG - chr1_2:54213502-54213521 Msa0077330:intron 35.0%
AAATTTATAGGCCTAACCTG+AGG + chr1_2:54213574-54213593 None:intergenic 35.0%
!! CTTCTCATCTTTAAGACCAA+TGG + chr1_2:54213816-54213835 None:intergenic 35.0%
!! CATTGGTCTTAAAGATGAGA+AGG - chr1_2:54213814-54213833 Msa0077330:CDS 35.0%
GAATCTCTCAATCTCGAAAA+AGG + chr1_2:54213884-54213903 None:intergenic 35.0%
! TGTTTGTTGGCATTGTTTGA+TGG + chr1_2:54213945-54213964 None:intergenic 35.0%
TGGTAGACTATTCTGTTTGT+TGG + chr1_2:54213958-54213977 None:intergenic 35.0%
CGATCATTGACAACAATTGT+AGG + chr1_2:54214289-54214308 None:intergenic 35.0%
CTCAACCAATGAATGAAGAT+CGG + chr1_2:54214375-54214394 None:intergenic 35.0%
TAAAGAACTACTCCACTTGA+AGG + chr1_2:54214697-54214716 None:intergenic 35.0%
TCTGCTAAAAAATGAAGGAC+AGG - chr1_2:54214903-54214922 Msa0077330:five_prime_UTR 35.0%
! TTGTGGACAAAAGGCTATTT+TGG + chr1_2:54215081-54215100 None:intergenic 35.0%
TTGCACTATATGTTTCCTAG+TGG - chr1_2:54215223-54215242 Msa0077330:five_prime_UTR 35.0%
GTACAAACAAGATAGAGAGA+TGG + chr1_2:54215343-54215362 None:intergenic 35.0%
AACCTGTATGCTTCTGTTTC+TGG - chr1_2:54210476-54210495 Msa0077330:three_prime_UTR 40.0%
! TTCCAGAAACAGAAGCATAC+AGG + chr1_2:54210481-54210500 None:intergenic 40.0%
ATAGAAAAGATACGGTACCG+TGG + chr1_2:54210510-54210529 None:intergenic 40.0%
GTTTGTTTCACGTGATCATG+GGG - chr1_2:54210547-54210566 Msa0077330:three_prime_UTR 40.0%
TTGACGCGTTAATGCTTCAT+AGG - chr1_2:54210849-54210868 Msa0077330:intron 40.0%
ATAAGATGCATCTCACACTC+GGG - chr1_2:54211060-54211079 Msa0077330:intron 40.0%
!! ATGGTATTGGCTTGGGATTT+GGG - chr1_2:54211091-54211110 Msa0077330:intron 40.0%
TCTTCAGTGTCAAGTTAGGT+GGG - chr1_2:54211148-54211167 Msa0077330:intron 40.0%
CGATGTTGAACCTAGTAGTA+TGG - chr1_2:54211607-54211626 Msa0077330:intron 40.0%
AGAGCAAGAACCATACTACT+AGG + chr1_2:54211620-54211639 None:intergenic 40.0%
TTTGCGCATATAACAGCAAG+AGG + chr1_2:54211698-54211717 None:intergenic 40.0%
CTACATCTGTAGGATCCATA+AGG + chr1_2:54211833-54211852 None:intergenic 40.0%
CTTATGGATCCTACAGATGT+AGG - chr1_2:54211831-54211850 Msa0077330:intron 40.0%
TCACATTTCCCTACATCTGT+AGG + chr1_2:54211843-54211862 None:intergenic 40.0%
!! TTTTGTCCCTTCAGGTTACA+CGG + chr1_2:54211952-54211971 None:intergenic 40.0%
GGGACAAAATTCAAATCCCT+CGG - chr1_2:54211963-54211982 Msa0077330:intron 40.0%
GGACAAAATTCAAATCCCTC+GGG - chr1_2:54211964-54211983 Msa0077330:intron 40.0%
GACAAAATTCAAATCCCTCG+GGG - chr1_2:54211965-54211984 Msa0077330:intron 40.0%
AATCATGATGTTGATCTGCC+AGG - chr1_2:54212174-54212193 Msa0077330:CDS 40.0%
TCCAAATTATCACCAGATCC+TGG + chr1_2:54212195-54212214 None:intergenic 40.0%
GAGAAAATTAACTCTGCTGG+AGG - chr1_2:54212213-54212232 Msa0077330:CDS 40.0%
!! GGAACATCTGATTTGGCAAA+TGG - chr1_2:54212234-54212253 Msa0077330:CDS 40.0%
AGCTGCTTCAATTTCAATGC+AGG + chr1_2:54212310-54212329 None:intergenic 40.0%
! CTGCATATCAAAGGCATGTA+TGG - chr1_2:54212524-54212543 Msa0077330:CDS 40.0%
ATGACACTGACATGTAGACA+CGG + chr1_2:54212620-54212639 None:intergenic 40.0%
AGAATGCATTGTCGCATAAC+CGG + chr1_2:54212645-54212664 None:intergenic 40.0%
TCTGCATCATGACTTTCTTC+AGG - chr1_2:54212737-54212756 Msa0077330:CDS 40.0%
AGATGGGTCTAAACTTAGCA+TGG - chr1_2:54212802-54212821 Msa0077330:CDS 40.0%
TGGAACAAAATCCTTCACCA+AGG - chr1_2:54212822-54212841 Msa0077330:CDS 40.0%
!! GGATACTAGTGTTGACAACA+TGG - chr1_2:54212865-54212884 Msa0077330:CDS 40.0%
!! TACTAGTGTTGACAACATGG+TGG - chr1_2:54212868-54212887 Msa0077330:CDS 40.0%
TAGCATCATCTCATTGACCT+TGG + chr1_2:54213113-54213132 None:intergenic 40.0%
CTCACAATCTAGTCAAGATG+AGG - chr1_2:54213342-54213361 Msa0077330:intron 40.0%
TCAAGATGAGGAGAAGTCTT+TGG - chr1_2:54213354-54213373 Msa0077330:intron 40.0%
!!! TGTCAGTGTTTTGAGAATGC+CGG - chr1_2:54213478-54213497 Msa0077330:intron 40.0%
GTGTTCTTCTTTACATCCTC+AGG - chr1_2:54213555-54213574 Msa0077330:intron 40.0%
CTTCTTTACATCCTCAGGTT+AGG - chr1_2:54213560-54213579 Msa0077330:intron 40.0%
! AAAGAGGCTTGTTCTTCCAT+TGG - chr1_2:54213797-54213816 Msa0077330:CDS 40.0%
AGATGAGAAGGGAAACAATG+AGG - chr1_2:54213826-54213845 Msa0077330:intron 40.0%
TTCGAGATTGAGAGATTCAG+AGG - chr1_2:54213886-54213905 Msa0077330:intron 40.0%
ATTGAGAGATTCAGAGGCAA+TGG - chr1_2:54213892-54213911 Msa0077330:intron 40.0%
TGGTTTCCATGTTTGCAAAG+AGG - chr1_2:54213912-54213931 Msa0077330:intron 40.0%
TCCATGTTTGCAAAGAGGTT+AGG - chr1_2:54213917-54213936 Msa0077330:intron 40.0%
ACCTAACCTCTTTGCAAACA+TGG + chr1_2:54213921-54213940 None:intergenic 40.0%
AACAGAATAGTCTACCACAC+AGG - chr1_2:54213961-54213980 Msa0077330:intron 40.0%
TTGTCAATGATCGTGATCGT+TGG - chr1_2:54214296-54214315 Msa0077330:CDS 40.0%
TTCGTCCGATCTTCATTCAT+TGG - chr1_2:54214367-54214386 Msa0077330:CDS 40.0%
GTTGTGCTGTGATTTAGTGA+GGG + chr1_2:54215027-54215046 None:intergenic 40.0%
AGTTGTGCTGTGATTTAGTG+AGG + chr1_2:54215028-54215047 None:intergenic 40.0%
! AACAAGTCTGAAGGTGTGTT+TGG + chr1_2:54215175-54215194 None:intergenic 40.0%
AATCGAATAAAGGGACCACT+AGG + chr1_2:54215241-54215260 None:intergenic 40.0%
!!! GTTTTGGAACTTCCCTAACT+TGG - chr1_2:54215316-54215335 Msa0077330:five_prime_UTR 40.0%
TAGAGAGATGGACCAAGTTA+GGG + chr1_2:54215331-54215350 None:intergenic 40.0%
ATAGAGAGATGGACCAAGTT+AGG + chr1_2:54215332-54215351 None:intergenic 40.0%
! CTCTATCTTGTTTGTACTGC+AGG - chr1_2:54215346-54215365 Msa0077330:five_prime_UTR 40.0%
CAGCAACGTTAAATGAGTTG+AGG + chr1_2:54215395-54215414 None:intergenic 40.0%
ATTACGACACCGACACACAT+CGG + chr1_2:54210776-54210795 None:intergenic 45.0%
AATCCCAAGCCAATACCATC+AGG + chr1_2:54211090-54211109 None:intergenic 45.0%
!! GATGGTATTGGCTTGGGATT+TGG - chr1_2:54211090-54211109 Msa0077330:intron 45.0%
CTCTTCAGTGTCAAGTTAGG+TGG - chr1_2:54211147-54211166 Msa0077330:intron 45.0%
TCCACATTCATACCCTACAC+AGG - chr1_2:54211281-54211300 Msa0077330:intron 45.0%
CTTGAGTACTCAGCAGTAGA+AGG + chr1_2:54211341-54211360 None:intergenic 45.0%
TTGCAAACTGAGTCAAGTGC+AGG - chr1_2:54211446-54211465 Msa0077330:intron 45.0%
CTTCAACAGATACTCCTGCT+AGG - chr1_2:54211729-54211748 Msa0077330:intron 45.0%
! TCGCTTGTTGAATTCCTAGC+AGG + chr1_2:54211746-54211765 None:intergenic 45.0%
TCAGCTCAATGGTAAGAGCT+TGG - chr1_2:54211926-54211945 Msa0077330:intron 45.0%
AAATTCAAATCCCTCGGGGA+TGG - chr1_2:54211969-54211988 Msa0077330:intron 45.0%
!! CATTTTTCAACCATCCCCGA+GGG + chr1_2:54211982-54212001 None:intergenic 45.0%
!! TCATTTTTCAACCATCCCCG+AGG + chr1_2:54211983-54212002 None:intergenic 45.0%
GCCAGGATCTGGTGATAATT+TGG - chr1_2:54212191-54212210 Msa0077330:CDS 45.0%
TGCTGGAGGAACATCTGATT+TGG - chr1_2:54212227-54212246 Msa0077330:CDS 45.0%
GTAACCACATGTGTCAGTGT+CGG + chr1_2:54212566-54212585 None:intergenic 45.0%
CTACATGTCAGTGTCATGTC+CGG - chr1_2:54212623-54212642 Msa0077330:CDS 45.0%
CAGATCAACCAAAGTCCAGT+TGG - chr1_2:54212761-54212780 Msa0077330:CDS 45.0%
! CACCTTCAATGGCCTTACAA+GGG - chr1_2:54213403-54213422 Msa0077330:intron 45.0%
GTCTACCACACAGGTAAACA+TGG - chr1_2:54213970-54213989 Msa0077330:intron 45.0%
TCAAGCCATGTTTACCTGTG+TGG + chr1_2:54213978-54213997 None:intergenic 45.0%
GCTTCAGGGACAAAACAAAC+TGG - chr1_2:54214967-54214986 Msa0077330:five_prime_UTR 45.0%
TCAGGGACAAAACAAACTGG+AGG - chr1_2:54214970-54214989 Msa0077330:five_prime_UTR 45.0%
TGTACTGCAGGAAGACATCA+TGG - chr1_2:54215358-54215377 Msa0077330:five_prime_UTR 45.0%
!! TTGGCCTGATGGTATTGGCT+TGG - chr1_2:54211083-54211102 Msa0077330:intron 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG - chr1_2:54211084-54211103 Msa0077330:intron 50.0%
TCGAACCTGAGACCTTGAGT+AGG + chr1_2:54211125-54211144 None:intergenic 50.0%
GCCTGTGTAGGGTATGAATG+TGG + chr1_2:54211285-54211304 None:intergenic 50.0%
TTCAACATCGCGCAAAAGCG+AGG + chr1_2:54211597-54211616 None:intergenic 50.0%
GATGTTGATCTGCCAGGATC+TGG - chr1_2:54212180-54212199 Msa0077330:CDS 50.0%
GTATCCGACACTGACACATG+TGG - chr1_2:54212559-54212578 Msa0077330:CDS 50.0%
ATCCTGATCGCCACCTTCAA+TGG - chr1_2:54213392-54213411 Msa0077330:intron 50.0%
CCTTGTAAGGCCATTGAAGG+TGG + chr1_2:54213405-54213424 None:intergenic 50.0%
! CCACCTTCAATGGCCTTACA+AGG - chr1_2:54213402-54213421 Msa0077330:intron 50.0%
GACCCTTGTAAGGCCATTGA+AGG + chr1_2:54213408-54213427 None:intergenic 50.0%
! TCTGGAGCTTGACCCTTGTA+AGG + chr1_2:54213418-54213437 None:intergenic 50.0%
CAAGCAATAGCCTCTGCAGA+CGG - chr1_2:54213533-54213552 Msa0077330:intron 50.0%
AAGAAGAACACCGTCTGCAG+AGG + chr1_2:54213546-54213565 None:intergenic 50.0%
GACACCGACACACATCGGAT+CGG + chr1_2:54210771-54210790 None:intergenic 55.0%
GATGCATCTCACACTCGGGT+TGG - chr1_2:54211064-54211083 Msa0077330:intron 55.0%
!! TCGGGTTGGCCTGATGGTAT+TGG - chr1_2:54211078-54211097 Msa0077330:intron 55.0%
! TGGGAGTGTGCTCCTACTCA+AGG - chr1_2:54211110-54211129 Msa0077330:intron 55.0%
GTGCTCCTACTCAAGGTCTC+AGG - chr1_2:54211117-54211136 Msa0077330:intron 55.0%
! GTCACGAGGTGTCAGCTCAA+TGG - chr1_2:54211915-54211934 Msa0077330:intron 55.0%
AGCTTGGCCGTGTAACCTGA+AGG - chr1_2:54211942-54211961 Msa0077330:intron 55.0%
GCTTGGCCGTGTAACCTGAA+GGG - chr1_2:54211943-54211962 Msa0077330:intron 55.0%
GCGTCCGATCCGATGTGTGT+CGG - chr1_2:54210764-54210783 Msa0077330:intron 60.0%
!! TCACACTCGGGTTGGCCTGA+TGG - chr1_2:54211072-54211091 Msa0077330:intron 60.0%
GGCCATTGAAGGTGGCGATC+AGG + chr1_2:54213397-54213416 None:intergenic 60.0%
TGGTTGAGATCTGCGAGCGC+AGG - chr1_2:54214387-54214406 Msa0077330:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 54210299 54215741 54210299 ID=Msa0077330;Name=Msa0077330
chr1_2 mRNA 54210299 54215741 54210299 ID=Msa0077330-mRNA-1;Parent=Msa0077330;Name=Msa0077330-mRNA-1;_AED=0.20;_eAED=0.20;_QI=914|1|1|1|0.5|0.28|7|358|561
chr1_2 exon 54210299 54210503 54210299 ID=Msa0077330-mRNA-1:exon:16765;Parent=Msa0077330-mRNA-1
chr1_2 exon 54210532 54210672 54210532 ID=Msa0077330-mRNA-1:exon:16764;Parent=Msa0077330-mRNA-1
chr1_2 exon 54212058 54212321 54212058 ID=Msa0077330-mRNA-1:exon:16763;Parent=Msa0077330-mRNA-1
chr1_2 exon 54212464 54213281 54212464 ID=Msa0077330-mRNA-1:exon:16762;Parent=Msa0077330-mRNA-1
chr1_2 exon 54213662 54213844 54213662 ID=Msa0077330-mRNA-1:exon:16761;Parent=Msa0077330-mRNA-1
chr1_2 exon 54214225 54214704 54214225 ID=Msa0077330-mRNA-1:exon:16760;Parent=Msa0077330-mRNA-1
chr1_2 exon 54214875 54215741 54214875 ID=Msa0077330-mRNA-1:exon:16759;Parent=Msa0077330-mRNA-1
chr1_2 five_prime_UTR 54214875 54215741 54214875 ID=Msa0077330-mRNA-1:five_prime_utr;Parent=Msa0077330-mRNA-1
chr1_2 five_prime_UTR 54214658 54214704 54214658 ID=Msa0077330-mRNA-1:five_prime_utr;Parent=Msa0077330-mRNA-1
chr1_2 CDS 54214225 54214657 54214225 ID=Msa0077330-mRNA-1:cds;Parent=Msa0077330-mRNA-1
chr1_2 CDS 54213662 54213844 54213662 ID=Msa0077330-mRNA-1:cds;Parent=Msa0077330-mRNA-1
chr1_2 CDS 54212464 54213281 54212464 ID=Msa0077330-mRNA-1:cds;Parent=Msa0077330-mRNA-1
chr1_2 CDS 54212070 54212321 54212070 ID=Msa0077330-mRNA-1:cds;Parent=Msa0077330-mRNA-1
chr1_2 three_prime_UTR 54212058 54212069 54212058 ID=Msa0077330-mRNA-1:three_prime_utr;Parent=Msa0077330-mRNA-1
chr1_2 three_prime_UTR 54210532 54210672 54210532 ID=Msa0077330-mRNA-1:three_prime_utr;Parent=Msa0077330-mRNA-1
chr1_2 three_prime_UTR 54210299 54210503 54210299 ID=Msa0077330-mRNA-1:three_prime_utr;Parent=Msa0077330-mRNA-1
Gene Sequence

>Msa0077330

ATGAAACCAAAGACTGGTTTTGAAGTCATTCTGAATTATTCTAGTCAATGTCATAAGGAAAAATTGCAAACTGAGTCAAGTGCAGGTGCAAATGCAGCTTCTAGAGCAAACACAATCTTTTCTGCCAATGATCCTCTATCTGAAATAGTTTGGACTCCAGATAAAGGTTTCAGTCTTAAATGTGTCGATTCAAGTTTTACTAACAAAAATACCTCGCTTTTGCGCGATGTTGAACCTAGTAGTATGGTTCTTGCTCTGCTACAAAGTGTTACTTGTACCACAGATAAACCTGTAGAAGATGTTTTTGTGCAACCTCTTGCTGTTATATGCGCAAAGAGTGATGTTTCTTCAACAGATACTCCTGCTAGGAATTCAACAAGCGATTCAGTTGCCATCTTTCCAGAATATACACCATATCAAGAACATGATACAGGATCTGGTGATAATTTGGAGAAAATTAACTCTGCTGGAGGAACATCTGATTTGGCAAATGGTCAAAAGGAGAATTTAATGAACCATTGGGAGAAGAATATTTGTGCTCAAGCCTGCATTGAAATTGAAGCAGCTAAAATATCTGAGATAATGGAAGAGGAAAACAAATCTTCTACTATTTCAGGTCAGATCAACCAAAGTCCAGTTGGTAATTTACAAGTTCATCAAGATGGGTCTAAACTTAGCATGGAACAAAATCCTTCACCAAGGAAACATTACAAAGAAGGCTTGGATACTAGTGTTGACAACATGGTGGTTGAAATAGAAGATGGCTCATATGCTAGAGTTGAACACATGATTGAAGATAAAGGTTCTAATCCTCTTGGAACATATTTGATATCATCCGGCATTAATCATTCGGAAAAAATGGATTTAACTTCACAGAAAGATTTACAAACTTTCAGCTGTAAAGCAGCTACTTCTGCAGCAACAAGCAGAGTTCTTGTTTCAAAATCCAATGATAATAAAAACAAATCCAAGGTCAATGAGATGATGCTACCATACAATAAGAATGAGAGTCGTCTAAGTTTTGAGAACTATCATAATACTGAATTGTTTTTGGCAAATCGGAAGCGATCCAAACAAGAAGTGATAATTGCGAGTAAAAGAGTCAAAATGCAAATTCAAGAAACTTCATCATATTCTAAATCCTATGTTAATCATCATAGCTCATTCATGAACTTGGTTTCAAACATGACTAAAGGATACTCACAATCTAGTCAAGATGAGGAGAAGTCTTTGGCTCTTGCTTACGAAAATCCTGATCGCCACCTTCAATGGCCTTACAAGGGTCAAGCTCCAGAGATTAAAAATTCCTTCAAATCCAATTTTCAGTCCACATATTGTCAGTGTTTTGAGAATGCCGGAACAAGAATGTCTCATCAAGTAGGAGAGTCTTCAAGCAATAGCCTCTGCAGACGGTGTTCTTCTTTACATCCTCAGGTTGAAGAGACTAAAGAACAATATGCTGATAACCAATTGGTCATTGAGACTAAAAAGTTACAGAATTGTTTTATCAACAAAGAGGCTTGTTCTTCCATTGGTCTTAAAGATGAGAAGGGAAACAATGAGGACATATCTAAGCATAAGTTTAACAATGTTACGCCTTTTTCGAGATTGAGAGATTCAGAGGCAATGGTTTCCATGTTTGCAAAGAGGTTAGGTGCCATCAAACAATGCCAACAAACAGAATAG

Protein sequence

>Msa0077330

MKPKTGFEVILNYSSQCHKEKLQTESSAGANAASRANTIFSANDPLSEIVWTPDKGFSLKCVDSSFTNKNTSLLRDVEPSSMVLALLQSVTCTTDKPVEDVFVQPLAVICAKSDVSSTDTPARNSTSDSVAIFPEYTPYQEHDTGSGDNLEKINSAGGTSDLANGQKENLMNHWEKNICAQACIEIEAAKISEIMEEENKSSTISGQINQSPVGNLQVHQDGSKLSMEQNPSPRKHYKEGLDTSVDNMVVEIEDGSYARVEHMIEDKGSNPLGTYLISSGINHSEKMDLTSQKDLQTFSCKAATSAATSRVLVSKSNDNKNKSKVNEMMLPYNKNESRLSFENYHNTELFLANRKRSKQEVIIASKRVKMQIQETSSYSKSYVNHHSSFMNLVSNMTKGYSQSSQDEEKSLALAYENPDRHLQWPYKGQAPEIKNSFKSNFQSTYCQCFENAGTRMSHQVGESSSNSLCRRCSSLHPQVEETKEQYADNQLVIETKKLQNCFINKEACSSIGLKDEKGNNEDISKHKFNNVTPFSRLRDSEAMVSMFAKRLGAIKQCQQTE*