AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967250 MtrunA17_Chr6g0484911 99.145 117 1 0 1 117 90 206 2.07e-84 244
Msa0967250 MtrunA17_Chr5g0422751 82.609 115 19 1 3 117 43 156 7.05e-68 201
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967250 AT1G68660.1 86.087 115 15 1 3 117 46 159 2.98e-70 207
Msa0967250 AT1G68660.2 62.069 116 13 2 2 117 45 129 1.33e-42 136

Find 21 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAAGAGGCACATATTAA+TGG 0.315465 6_3:-96616044 Msa0967250:CDS
GCAATATCAACTGTCATTCC+AGG 0.427583 6_3:+96616077 None:intergenic
TGCATGCAATTGAGAGGAAA+TGG 0.433575 6_3:-96615975 Msa0967250:CDS
GAGAATCTGAATTTGACTTA+AGG 0.436402 6_3:-96617716 Msa0967250:intron
TGGAAAAGGTGGTGGTTTGT+TGG 0.476679 6_3:-96617775 Msa0967250:CDS
TTGTGTAGCATTACTCTGTA+TGG 0.492187 6_3:+96616152 None:intergenic
GTCAAATTCAGATTCTCGAC+CGG 0.494941 6_3:+96617722 None:intergenic
TTCCTCTCAATTGCATGCAA+TGG 0.502233 6_3:+96615979 None:intergenic
ACAATGGTAGCCAGTGGAAA+AGG 0.510833 6_3:-96617789 Msa0967250:CDS
ACTCAACAACCACCATCAGC+TGG 0.533580 6_3:+96615933 None:intergenic
AGTTCAATTGAACCAGCTGA+TGG 0.567124 6_3:-96615945 Msa0967250:CDS
TGCAGTTAACGTCATGCAAG+AGG 0.589593 6_3:-96616057 Msa0967250:CDS
TCAAATTCAGATTCTCGACC+GGG 0.594401 6_3:+96617723 None:intergenic
GTAGCCAGTGGAAAAGGTGG+TGG 0.601202 6_3:-96617783 Msa0967250:CDS
GACCATTGCATGCAATTGAG+AGG 0.614338 6_3:-96615981 Msa0967250:CDS
ATGGTAGCCAGTGGAAAAGG+TGG 0.632586 6_3:-96617786 Msa0967250:CDS
GTGTTGATGAAAGTGATACC+TGG 0.634232 6_3:-96616095 Msa0967250:CDS
TGTAGCATTACTCTGTATGG+TGG 0.656579 6_3:+96616155 None:intergenic
ACATATTAATGGATTAGCAG+TGG 0.658551 6_3:-96616033 Msa0967250:CDS
TCAATTGAACCAGCTGATGG+TGG 0.677829 6_3:-96615942 Msa0967250:CDS
GTATTGACAATGGTAGCCAG+TGG 0.692867 6_3:-96617795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTAACATTAATTAT+AGG - chr6_3:96616751-96616770 Msa0967250:intron 10.0%
!! AAATTACTAACATTAATTAT+AGG - chr6_3:96616751-96616770 Msa0967250:intron 10.0%
!!! CAAATTTTAAATTCAAATGT+TGG - chr6_3:96616437-96616456 Msa0967250:intron 15.0%
!!! ATTTTATTATGGACTTATAT+TGG - chr6_3:96616510-96616529 Msa0967250:intron 15.0%
!! AAAAAAACATTAGAAATTAG+CGG - chr6_3:96617246-96617265 Msa0967250:intron 15.0%
!!! CAAATTTTAAATTCAAATGT+TGG - chr6_3:96616437-96616456 Msa0967250:intron 15.0%
!!! ATTTTATTATGGACTTATAT+TGG - chr6_3:96616510-96616529 Msa0967250:intron 15.0%
!! AAAAAAACATTAGAAATTAG+CGG - chr6_3:96617246-96617265 Msa0967250:intron 15.0%
!! TAATGTTATCATTAGAGTAA+TGG + chr6_3:96616206-96616225 None:intergenic 20.0%
!!! AAATTTGAAGCTGTTTTTTT+AGG + chr6_3:96616424-96616443 None:intergenic 20.0%
!! TCACAATCATATTAATTGAA+AGG - chr6_3:96617002-96617021 Msa0967250:intron 20.0%
!! TACATACCGATAAAAAAATA+TGG - chr6_3:96617316-96617335 Msa0967250:intron 20.0%
!!! TAGTGACCATATTTTTTTAT+CGG + chr6_3:96617325-96617344 None:intergenic 20.0%
!! TCTTAATAACTTTAGATTGA+AGG - chr6_3:96617368-96617387 Msa0967250:intron 20.0%
!! TAATGTTATCATTAGAGTAA+TGG + chr6_3:96616206-96616225 None:intergenic 20.0%
!!! AAATTTGAAGCTGTTTTTTT+AGG + chr6_3:96616424-96616443 None:intergenic 20.0%
!! TCACAATCATATTAATTGAA+AGG - chr6_3:96617002-96617021 Msa0967250:intron 20.0%
!! TACATACCGATAAAAAAATA+TGG - chr6_3:96617316-96617335 Msa0967250:intron 20.0%
!!! TAGTGACCATATTTTTTTAT+CGG + chr6_3:96617325-96617344 None:intergenic 20.0%
!! TCTTAATAACTTTAGATTGA+AGG - chr6_3:96617368-96617387 Msa0967250:intron 20.0%
! ATGTGAAATATGGTATCAAT+TGG + chr6_3:96616162-96616181 None:intergenic 25.0%
!! CAAACTTTTGATGTGAAATA+TGG + chr6_3:96616172-96616191 None:intergenic 25.0%
! ACATTAGAAGTTGAAAGATT+AGG - chr6_3:96616220-96616239 Msa0967250:intron 25.0%
! CATTAGAAGTTGAAAGATTA+GGG - chr6_3:96616221-96616240 Msa0967250:intron 25.0%
!! AAGTAAACGAAATCATTTTG+TGG - chr6_3:96616911-96616930 Msa0967250:intron 25.0%
!!! CATTGTTTTTGTAGTTACAT+AGG + chr6_3:96617053-96617072 None:intergenic 25.0%
! AGAGATCGAATATATCAAAT+CGG - chr6_3:96617105-96617124 Msa0967250:intron 25.0%
! GTTAACATTAGAAATTAGCA+AGG - chr6_3:96617142-96617161 Msa0967250:intron 25.0%
!!! GCTTTATTGTTTTTGTTACT+AGG - chr6_3:96617525-96617544 Msa0967250:intron 25.0%
! ATGTGAAATATGGTATCAAT+TGG + chr6_3:96616162-96616181 None:intergenic 25.0%
!! CAAACTTTTGATGTGAAATA+TGG + chr6_3:96616172-96616191 None:intergenic 25.0%
! ACATTAGAAGTTGAAAGATT+AGG - chr6_3:96616220-96616239 Msa0967250:intron 25.0%
! CATTAGAAGTTGAAAGATTA+GGG - chr6_3:96616221-96616240 Msa0967250:intron 25.0%
!! AAGTAAACGAAATCATTTTG+TGG - chr6_3:96616911-96616930 Msa0967250:intron 25.0%
!!! CATTGTTTTTGTAGTTACAT+AGG + chr6_3:96617053-96617072 None:intergenic 25.0%
! AGAGATCGAATATATCAAAT+CGG - chr6_3:96617105-96617124 Msa0967250:intron 25.0%
! GTTAACATTAGAAATTAGCA+AGG - chr6_3:96617142-96617161 Msa0967250:intron 25.0%
!!! GCTTTATTGTTTTTGTTACT+AGG - chr6_3:96617525-96617544 Msa0967250:intron 25.0%
! GAGAATCTGAATTTGACTTA+AGG - chr6_3:96616005-96616024 Msa0967250:CDS 30.0%
!! TTCATGTTGGTAATTTGAGA+CGG + chr6_3:96616266-96616285 None:intergenic 30.0%
GGTCTAAGTAAAATTTGACT+TGG - chr6_3:96616297-96616316 Msa0967250:intron 30.0%
!! TTTGACTTGGAGAATCTTTA+AGG - chr6_3:96616310-96616329 Msa0967250:intron 30.0%
AGTACACCTCAAATTGTAAA+AGG + chr6_3:96616468-96616487 None:intergenic 30.0%
! AATTTGAGGTGTACTACTTA+AGG - chr6_3:96616473-96616492 Msa0967250:intron 30.0%
! ATTTGAGGTGTACTACTTAA+GGG - chr6_3:96616474-96616493 Msa0967250:intron 30.0%
GTTCAATGGGAAGAATATAA+TGG + chr6_3:96616561-96616580 None:intergenic 30.0%
TTTCAACATTGTTAGACACA+TGG + chr6_3:96616712-96616731 None:intergenic 30.0%
ACAGGGAAATACAAAGAAAA+GGG + chr6_3:96616973-96616992 None:intergenic 30.0%
GATATATTCGATCTCTAGAT+CGG + chr6_3:96617101-96617120 None:intergenic 30.0%
ATTAGAAATTAGCAAGGATC+TGG - chr6_3:96617148-96617167 Msa0967250:intron 30.0%
TTAGAAATTAGCAAGGATCT+GGG - chr6_3:96617149-96617168 Msa0967250:intron 30.0%
TCGTAAATCAGTCTCTAAAT+TGG - chr6_3:96617281-96617300 Msa0967250:intron 30.0%
ACAAGTGTTAATATCATGTC+TGG + chr6_3:96617406-96617425 None:intergenic 30.0%
!!! ATTTCTATTTTTCAAGCCAG+TGG - chr6_3:96617439-96617458 Msa0967250:intron 30.0%
!! ACATATTAATGGATTAGCAG+TGG - chr6_3:96617688-96617707 Msa0967250:intron 30.0%
! GAGAATCTGAATTTGACTTA+AGG - chr6_3:96616005-96616024 Msa0967250:CDS 30.0%
!! TTCATGTTGGTAATTTGAGA+CGG + chr6_3:96616266-96616285 None:intergenic 30.0%
GGTCTAAGTAAAATTTGACT+TGG - chr6_3:96616297-96616316 Msa0967250:intron 30.0%
!! TTTGACTTGGAGAATCTTTA+AGG - chr6_3:96616310-96616329 Msa0967250:intron 30.0%
AGTACACCTCAAATTGTAAA+AGG + chr6_3:96616468-96616487 None:intergenic 30.0%
! AATTTGAGGTGTACTACTTA+AGG - chr6_3:96616473-96616492 Msa0967250:intron 30.0%
! ATTTGAGGTGTACTACTTAA+GGG - chr6_3:96616474-96616493 Msa0967250:intron 30.0%
GTTCAATGGGAAGAATATAA+TGG + chr6_3:96616561-96616580 None:intergenic 30.0%
TTTCAACATTGTTAGACACA+TGG + chr6_3:96616712-96616731 None:intergenic 30.0%
ACAGGGAAATACAAAGAAAA+GGG + chr6_3:96616973-96616992 None:intergenic 30.0%
GATATATTCGATCTCTAGAT+CGG + chr6_3:96617101-96617120 None:intergenic 30.0%
ATTAGAAATTAGCAAGGATC+TGG - chr6_3:96617148-96617167 Msa0967250:intron 30.0%
TTAGAAATTAGCAAGGATCT+GGG - chr6_3:96617149-96617168 Msa0967250:intron 30.0%
TCGTAAATCAGTCTCTAAAT+TGG - chr6_3:96617281-96617300 Msa0967250:intron 30.0%
ACAAGTGTTAATATCATGTC+TGG + chr6_3:96617406-96617425 None:intergenic 30.0%
!!! ATTTCTATTTTTCAAGCCAG+TGG - chr6_3:96617439-96617458 Msa0967250:intron 30.0%
!! ACATATTAATGGATTAGCAG+TGG - chr6_3:96617688-96617707 Msa0967250:intron 30.0%
!!! GTTGTTTTTTCAATGGTTGG+AGG + chr6_3:96615977-96615996 None:intergenic 35.0%
!!! GGTGTTGTTTTTTCAATGGT+TGG + chr6_3:96615980-96615999 None:intergenic 35.0%
ACCATTGAAAAAACAACACC+CGG - chr6_3:96615980-96615999 Msa0967250:CDS 35.0%
CCAATGTAATGCTTTCATGT+TGG + chr6_3:96616279-96616298 None:intergenic 35.0%
!! CCAACATGAAAGCATTACAT+TGG - chr6_3:96616276-96616295 Msa0967250:intron 35.0%
!! TTGGAGAATCTTTAAGGTCT+TGG - chr6_3:96616316-96616335 Msa0967250:intron 35.0%
!! TGGAGAATCTTTAAGGTCTT+GGG - chr6_3:96616317-96616336 Msa0967250:intron 35.0%
TTCTTTCTATCCACAAGACT+CGG + chr6_3:96616344-96616363 None:intergenic 35.0%
ATGTCTGTCTAAGAACCTAA+CGG + chr6_3:96616370-96616389 None:intergenic 35.0%
! GTGCATCCTTTTACAATTTG+AGG - chr6_3:96616459-96616478 Msa0967250:intron 35.0%
CTTCACATGCTTAGTTCAAT+GGG + chr6_3:96616574-96616593 None:intergenic 35.0%
CTTGTCTGCTATAATAGTTG+CGG - chr6_3:96616651-96616670 Msa0967250:intron 35.0%
GACAGGGAAATACAAAGAAA+AGG + chr6_3:96616974-96616993 None:intergenic 35.0%
ATGATGCATGGATACAAACA+CGG + chr6_3:96617483-96617502 None:intergenic 35.0%
!!! AGGTTTTGAACTATGATGCA+TGG + chr6_3:96617495-96617514 None:intergenic 35.0%
GCATCATAGTTCAAAACCTT+TGG - chr6_3:96617496-96617515 Msa0967250:intron 35.0%
ACAATAAAGCATGTCACCAA+AGG + chr6_3:96617515-96617534 None:intergenic 35.0%
TTGTGTAGCATTACTCTGTA+TGG + chr6_3:96617572-96617591 None:intergenic 35.0%
! ATGCAAGAGGCACATATTAA+TGG - chr6_3:96617677-96617696 Msa0967250:intron 35.0%
!!! GTTGTTTTTTCAATGGTTGG+AGG + chr6_3:96615977-96615996 None:intergenic 35.0%
!!! GGTGTTGTTTTTTCAATGGT+TGG + chr6_3:96615980-96615999 None:intergenic 35.0%
ACCATTGAAAAAACAACACC+CGG - chr6_3:96615980-96615999 Msa0967250:CDS 35.0%
CCAATGTAATGCTTTCATGT+TGG + chr6_3:96616279-96616298 None:intergenic 35.0%
!! CCAACATGAAAGCATTACAT+TGG - chr6_3:96616276-96616295 Msa0967250:intron 35.0%
!! TTGGAGAATCTTTAAGGTCT+TGG - chr6_3:96616316-96616335 Msa0967250:intron 35.0%
!! TGGAGAATCTTTAAGGTCTT+GGG - chr6_3:96616317-96616336 Msa0967250:intron 35.0%
TTCTTTCTATCCACAAGACT+CGG + chr6_3:96616344-96616363 None:intergenic 35.0%
ATGTCTGTCTAAGAACCTAA+CGG + chr6_3:96616370-96616389 None:intergenic 35.0%
! GTGCATCCTTTTACAATTTG+AGG - chr6_3:96616459-96616478 Msa0967250:intron 35.0%
CTTCACATGCTTAGTTCAAT+GGG + chr6_3:96616574-96616593 None:intergenic 35.0%
CTTGTCTGCTATAATAGTTG+CGG - chr6_3:96616651-96616670 Msa0967250:intron 35.0%
GACAGGGAAATACAAAGAAA+AGG + chr6_3:96616974-96616993 None:intergenic 35.0%
ATGATGCATGGATACAAACA+CGG + chr6_3:96617483-96617502 None:intergenic 35.0%
!!! AGGTTTTGAACTATGATGCA+TGG + chr6_3:96617495-96617514 None:intergenic 35.0%
GCATCATAGTTCAAAACCTT+TGG - chr6_3:96617496-96617515 Msa0967250:intron 35.0%
ACAATAAAGCATGTCACCAA+AGG + chr6_3:96617515-96617534 None:intergenic 35.0%
TTGTGTAGCATTACTCTGTA+TGG + chr6_3:96617572-96617591 None:intergenic 35.0%
! ATGCAAGAGGCACATATTAA+TGG - chr6_3:96617677-96617696 Msa0967250:intron 35.0%
!!! ACCGGGTGTTGTTTTTTCAA+TGG + chr6_3:96615984-96616003 None:intergenic 40.0%
TCAAATTCAGATTCTCGACC+GGG + chr6_3:96616001-96616020 None:intergenic 40.0%
GTCAAATTCAGATTCTCGAC+CGG + chr6_3:96616002-96616021 None:intergenic 40.0%
TGTCTGTCTAAGAACCTAAC+GGG + chr6_3:96616369-96616388 None:intergenic 40.0%
CCTTCACATGCTTAGTTCAA+TGG + chr6_3:96616575-96616594 None:intergenic 40.0%
CCATTGAACTAAGCATGTGA+AGG - chr6_3:96616572-96616591 Msa0967250:intron 40.0%
CGCAACTATTATAGCAGACA+AGG + chr6_3:96616653-96616672 None:intergenic 40.0%
ATTGTTAGACACATGGAGGA+TGG + chr6_3:96616705-96616724 None:intergenic 40.0%
CAACATTGTTAGACACATGG+AGG + chr6_3:96616709-96616728 None:intergenic 40.0%
GACTACACATGCAGAAAGAT+AGG + chr6_3:96616951-96616970 None:intergenic 40.0%
GATTGTGATATCACGAGACA+GGG + chr6_3:96616990-96617009 None:intergenic 40.0%
TGATTGTGATATCACGAGAC+AGG + chr6_3:96616991-96617010 None:intergenic 40.0%
! ATTCTTTCCGGTGCCAATTT+GGG - chr6_3:96617202-96617221 Msa0967250:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr6_3:96617218-96617237 None:intergenic 40.0%
!!! ATTTTTCAAGCCAGTGGTAG+TGG - chr6_3:96617445-96617464 Msa0967250:intron 40.0%
ATCATATATGCCACTACCAC+TGG + chr6_3:96617458-96617477 None:intergenic 40.0%
TGTAGCATTACTCTGTATGG+TGG + chr6_3:96617569-96617588 None:intergenic 40.0%
! GTGTTGATGAAAGTGATACC+TGG - chr6_3:96617626-96617645 Msa0967250:intron 40.0%
GCAATATCAACTGTCATTCC+AGG + chr6_3:96617647-96617666 None:intergenic 40.0%
TTCCTCTCAATTGCATGCAA+TGG + chr6_3:96617745-96617764 None:intergenic 40.0%
TGCATGCAATTGAGAGGAAA+TGG - chr6_3:96617746-96617765 Msa0967250:CDS 40.0%
AGTTCAATTGAACCAGCTGA+TGG - chr6_3:96617776-96617795 Msa0967250:CDS 40.0%
!!! ACCGGGTGTTGTTTTTTCAA+TGG + chr6_3:96615984-96616003 None:intergenic 40.0%
TCAAATTCAGATTCTCGACC+GGG + chr6_3:96616001-96616020 None:intergenic 40.0%
GTCAAATTCAGATTCTCGAC+CGG + chr6_3:96616002-96616021 None:intergenic 40.0%
TGTCTGTCTAAGAACCTAAC+GGG + chr6_3:96616369-96616388 None:intergenic 40.0%
CCTTCACATGCTTAGTTCAA+TGG + chr6_3:96616575-96616594 None:intergenic 40.0%
CCATTGAACTAAGCATGTGA+AGG - chr6_3:96616572-96616591 Msa0967250:intron 40.0%
CGCAACTATTATAGCAGACA+AGG + chr6_3:96616653-96616672 None:intergenic 40.0%
ATTGTTAGACACATGGAGGA+TGG + chr6_3:96616705-96616724 None:intergenic 40.0%
CAACATTGTTAGACACATGG+AGG + chr6_3:96616709-96616728 None:intergenic 40.0%
GACTACACATGCAGAAAGAT+AGG + chr6_3:96616951-96616970 None:intergenic 40.0%
GATTGTGATATCACGAGACA+GGG + chr6_3:96616990-96617009 None:intergenic 40.0%
TGATTGTGATATCACGAGAC+AGG + chr6_3:96616991-96617010 None:intergenic 40.0%
! ATTCTTTCCGGTGCCAATTT+GGG - chr6_3:96617202-96617221 Msa0967250:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr6_3:96617218-96617237 None:intergenic 40.0%
!!! ATTTTTCAAGCCAGTGGTAG+TGG - chr6_3:96617445-96617464 Msa0967250:intron 40.0%
ATCATATATGCCACTACCAC+TGG + chr6_3:96617458-96617477 None:intergenic 40.0%
TGTAGCATTACTCTGTATGG+TGG + chr6_3:96617569-96617588 None:intergenic 40.0%
! GTGTTGATGAAAGTGATACC+TGG - chr6_3:96617626-96617645 Msa0967250:intron 40.0%
GCAATATCAACTGTCATTCC+AGG + chr6_3:96617647-96617666 None:intergenic 40.0%
TTCCTCTCAATTGCATGCAA+TGG + chr6_3:96617745-96617764 None:intergenic 40.0%
TGCATGCAATTGAGAGGAAA+TGG - chr6_3:96617746-96617765 Msa0967250:CDS 40.0%
AGTTCAATTGAACCAGCTGA+TGG - chr6_3:96617776-96617795 Msa0967250:CDS 40.0%
! TGGAAAAGGTGGTGGTTTGT+TGG - chr6_3:96615946-96615965 Msa0967250:CDS 45.0%
GGATAGAAAGAATGCCCGTT+AGG - chr6_3:96616352-96616371 Msa0967250:intron 45.0%
GCTATAATAGTTGCGGTCAC+TGG - chr6_3:96616658-96616677 Msa0967250:intron 45.0%
! GATTCTTTCCGGTGCCAATT+TGG - chr6_3:96617201-96617220 Msa0967250:intron 45.0%
TGCAGTTAACGTCATGCAAG+AGG - chr6_3:96617664-96617683 Msa0967250:intron 45.0%
GACCATTGCATGCAATTGAG+AGG - chr6_3:96617740-96617759 Msa0967250:CDS 45.0%
TCAATTGAACCAGCTGATGG+TGG - chr6_3:96617779-96617798 Msa0967250:CDS 45.0%
! TGGAAAAGGTGGTGGTTTGT+TGG - chr6_3:96615946-96615965 Msa0967250:CDS 45.0%
GGATAGAAAGAATGCCCGTT+AGG - chr6_3:96616352-96616371 Msa0967250:intron 45.0%
GCTATAATAGTTGCGGTCAC+TGG - chr6_3:96616658-96616677 Msa0967250:intron 45.0%
! GATTCTTTCCGGTGCCAATT+TGG - chr6_3:96617201-96617220 Msa0967250:intron 45.0%
TGCAGTTAACGTCATGCAAG+AGG - chr6_3:96617664-96617683 Msa0967250:intron 45.0%
GACCATTGCATGCAATTGAG+AGG - chr6_3:96617740-96617759 Msa0967250:CDS 45.0%
TCAATTGAACCAGCTGATGG+TGG - chr6_3:96617779-96617798 Msa0967250:CDS 45.0%
!!! ACTAATAAATTATTTTATTA+TGG - chr6_3:96616499-96616518 Msa0967250:intron 5.0%
!!! ACTAATAAATTATTTTATTA+TGG - chr6_3:96616499-96616518 Msa0967250:intron 5.0%
ATGGTAGCCAGTGGAAAAGG+TGG - chr6_3:96615935-96615954 Msa0967250:CDS 50.0%
! CAAACCACCACCTTTTCCAC+TGG + chr6_3:96615945-96615964 None:intergenic 50.0%
GTCTCGGGTTCGATTCTTTC+CGG - chr6_3:96617190-96617209 Msa0967250:intron 50.0%
! TTTCCGGTGCCAATTTGGGT+GGG - chr6_3:96617206-96617225 Msa0967250:intron 50.0%
ATGGTAGCCAGTGGAAAAGG+TGG - chr6_3:96615935-96615954 Msa0967250:CDS 50.0%
! CAAACCACCACCTTTTCCAC+TGG + chr6_3:96615945-96615964 None:intergenic 50.0%
GTCTCGGGTTCGATTCTTTC+CGG - chr6_3:96617190-96617209 Msa0967250:intron 50.0%
! TTTCCGGTGCCAATTTGGGT+GGG - chr6_3:96617206-96617225 Msa0967250:intron 50.0%
GTAGCCAGTGGAAAAGGTGG+TGG - chr6_3:96615938-96615957 Msa0967250:CDS 55.0%
TGGGAATGTGCTCCTCCTCA+AGG - chr6_3:96617168-96617187 Msa0967250:intron 55.0%
TGTGCTCCTCCTCAAGGTCT+CGG - chr6_3:96617174-96617193 Msa0967250:intron 55.0%
GAATCGAACCCGAGACCTTG+AGG + chr6_3:96617186-96617205 None:intergenic 55.0%
! CTTTCCGGTGCCAATTTGGG+TGG - chr6_3:96617205-96617224 Msa0967250:intron 55.0%
TAGCCCACCCAAATTGGCAC+CGG + chr6_3:96617212-96617231 None:intergenic 55.0%
GTAGCCAGTGGAAAAGGTGG+TGG - chr6_3:96615938-96615957 Msa0967250:CDS 55.0%
TGGGAATGTGCTCCTCCTCA+AGG - chr6_3:96617168-96617187 Msa0967250:intron 55.0%
TGTGCTCCTCCTCAAGGTCT+CGG - chr6_3:96617174-96617193 Msa0967250:intron 55.0%
GAATCGAACCCGAGACCTTG+AGG + chr6_3:96617186-96617205 None:intergenic 55.0%
! CTTTCCGGTGCCAATTTGGG+TGG - chr6_3:96617205-96617224 Msa0967250:intron 55.0%
TAGCCCACCCAAATTGGCAC+CGG + chr6_3:96617212-96617231 None:intergenic 55.0%
GGTCTTGGGTCCGAGTCTTG+TGG - chr6_3:96616331-96616350 Msa0967250:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+GGG - chr6_3:96617175-96617194 Msa0967250:intron 60.0%
TCGAACCCGAGACCTTGAGG+AGG + chr6_3:96617183-96617202 None:intergenic 60.0%
GGTCTTGGGTCCGAGTCTTG+TGG - chr6_3:96616331-96616350 Msa0967250:intron 60.0%
GTGCTCCTCCTCAAGGTCTC+GGG - chr6_3:96617175-96617194 Msa0967250:intron 60.0%
TCGAACCCGAGACCTTGAGG+AGG + chr6_3:96617183-96617202 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 96615935 96617808 96615935 ID=Msa0967250;Name=Msa0967250
chr6_3 mRNA 96615935 96617808 96615935 ID=Msa0967250-mRNA-1;Parent=Msa0967250;Name=Msa0967250-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|2|0|117
chr6_3 exon 96617717 96617808 96617717 ID=Msa0967250-mRNA-1:exon:17925;Parent=Msa0967250-mRNA-1
chr6_3 exon 96615935 96616196 96615935 ID=Msa0967250-mRNA-1:exon:17924;Parent=Msa0967250-mRNA-1
chr6_3 CDS 96617717 96617808 96617717 ID=Msa0967250-mRNA-1:cds;Parent=Msa0967250-mRNA-1
chr6_3 CDS 96615935 96616196 96615935 ID=Msa0967250-mRNA-1:cds;Parent=Msa0967250-mRNA-1
Gene Sequence

>Msa0967250

ATGGTAGCCAGTGGAAAAGGTGGTGGTTTGTTGGACAAGCCTCCAACCATTGAAAAAACAACACCCGGTCGAGAATCTGAATTTGACTTAAGGAAATCAAAAAAGACATCTCCACCATACAGAGTAATGCTACACAATGACAACTATAACAAAAGAGAATATGTAGTGCAAGTGTTGATGAAAGTGATACCTGGAATGACAGTTGATATTGCAGTTAACGTCATGCAAGAGGCACATATTAATGGATTAGCAGTGGTCATTATTTGTGCTCAAGTTGATGCTGAAGACCATTGCATGCAATTGAGAGGAAATGGTCTTTTAAGTTCAATTGAACCAGCTGATGGTGGTTGTTGA

Protein sequence

>Msa0967250

MVASGKGGGLLDKPPTIEKTTPGRESEFDLRKSKKTSPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDIAVNVMQEAHINGLAVVIICAQVDAEDHCMQLRGNGLLSSIEPADGGC*