AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0576550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576550 MtrunA17_Chr8g0390131 85.829 748 14 2 1 748 1 656 0.0 1245
Msa0576550 MtrunA17_Chr8g0368501 54.595 370 118 1 63 432 86 405 2.69e-140 424
Msa0576550 MtrunA17_Chr7g0246441 38.386 409 159 7 27 430 51 371 3.77e-83 270
Msa0576550 MtrunA17_Chr0c01g0489491 38.857 350 130 6 79 424 54 323 9.51e-72 237
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0576550 AT2G20020.1 61.033 426 99 5 22 445 108 468 7.42e-176 521
Msa0576550 AT2G20020.1 33.333 198 108 5 575 748 504 701 2.00e-15 80.9
Msa0576550 AT1G23400.1 46.455 536 206 8 12 539 44 506 3.20e-141 427
Msa0576550 AT5G54890.1 38.202 356 136 6 74 425 73 348 1.40e-75 248
Msa0576550 AT4G31010.2 38.356 365 160 5 67 428 72 374 2.30e-75 250
Msa0576550 AT4G31010.1 37.808 365 155 5 67 428 72 367 4.75e-74 246

Find 228 sgRNAs with CRISPR-Local

Find 427 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGGGGTATTTACGTATTT+TGG 0.098623 4_1:+80613738 Msa0576550:intron
ATCTAGTCGCCAACTCAATT+TGG 0.170296 4_1:+80612689 Msa0576550:CDS
TAATATTATCTTAATATTCT+AGG 0.172058 4_1:+80616315 Msa0576550:three_prime_UTR
AATGAAATTCCTTTCATAAA+AGG 0.190086 4_1:-80615805 None:intergenic
ATTTGAACGGGTTTGGATTT+AGG 0.200570 4_1:-80612399 None:intergenic
CTGGTGTTGCTGCAAGATTC+TGG 0.213846 4_1:-80615529 None:intergenic
GGTCTTTCTACTTCAATTTC+AGG 0.228202 4_1:+80615661 Msa0576550:CDS
GCCCTTATGGAAGACGCGCC+TGG 0.263790 4_1:+80613798 Msa0576550:CDS
GAAAGGAATTTCATTGCTAT+TGG 0.264717 4_1:+80615813 Msa0576550:CDS
GGGTCCACTTTGGGCTTTGA+TGG 0.270425 4_1:-80612222 None:intergenic
TCTTCTAACGTTAAACCTTC+TGG 0.271508 4_1:-80614663 None:intergenic
TGTGATTGTGGGTCCACTTT+GGG 0.302000 4_1:-80612231 None:intergenic
GTTGTCAGCATCAGCTTTAG+TGG 0.305223 4_1:-80615254 None:intergenic
CACATACCTCGGGCTAGTTC+CGG 0.312099 4_1:-80612592 None:intergenic
TTCACGCATTTGAACGGGTT+TGG 0.312108 4_1:-80612406 None:intergenic
CGTTGCCACGAAAGGTAAAA+AGG 0.333362 4_1:+80616050 Msa0576550:CDS
AGTGGGCGACTTGGCCCTTC+AGG 0.334631 4_1:+80613858 Msa0576550:CDS
CCATGGAACTTCGGATATAA+TGG 0.339466 4_1:+80615618 Msa0576550:CDS
GGGCCAAGTCGCCCACTAGA+AGG 0.345464 4_1:-80613852 None:intergenic
ATGAAATTCCTTTCATAAAA+GGG 0.347399 4_1:-80615804 None:intergenic
GGCGGTTCACGCATTTGAAC+GGG 0.360709 4_1:-80612411 None:intergenic
GATGAGTTGCTAAATGATTC+AGG 0.360763 4_1:+80615745 Msa0576550:CDS
ACATACCTCGGGCTAGTTCC+GGG 0.373027 4_1:-80612591 None:intergenic
CGGTGGGCCGCCGGGATGAT+TGG 0.374763 4_1:-80612182 None:intergenic
TGGGCTTTCCGGTGGGCCGC+CGG 0.375005 4_1:-80612191 None:intergenic
AAAGATACCTAGCTTGCATA+TGG 0.380598 4_1:-80614724 None:intergenic
GGGTTTGGATTTAGGAGTTT+CGG 0.382337 4_1:-80612391 None:intergenic
AAAAGTGACTATCGAAAGAT+TGG 0.383112 4_1:+80614946 Msa0576550:CDS
CTTGTACCGCAAGGAACATT+AGG 0.389206 4_1:+80616126 Msa0576550:CDS
TGTAATTTCTTCCTCGGAAA+AGG 0.393184 4_1:-80614560 None:intergenic
GTCGGCATTGGAGGCGGAGA+TGG 0.394126 4_1:-80612160 None:intergenic
TATAATTGTAATTTCTTCCT+CGG 0.394870 4_1:-80614566 None:intergenic
GGGCTTTCCGGTGGGCCGCC+GGG 0.395177 4_1:-80612190 None:intergenic
TAAGTGAGGCGGCGCCCTTA+TGG 0.400983 4_1:+80613785 Msa0576550:CDS
TCTAGTCGCCAACTCAATTT+GGG 0.402717 4_1:+80612690 Msa0576550:CDS
CCTCTCTAACATTGTTTACA+AGG 0.412472 4_1:-80614876 None:intergenic
TTAATCTCCTCCTTCGTCAA+TGG 0.413008 4_1:-80612642 None:intergenic
GCCCAGGCGCGTCTTCCATA+AGG 0.414197 4_1:-80613800 None:intergenic
TTGAAGTCCTCTACGAGATC+TGG 0.415911 4_1:-80615226 None:intergenic
ACACATAGTCTTGATTGTTT+CGG 0.418670 4_1:+80611978 Msa0576550:five_prime_UTR
CCCTTATGGAAGACGCGCCT+GGG 0.418692 4_1:+80613799 Msa0576550:CDS
GGATAATGTGTGCCAGCAAT+TGG 0.420773 4_1:+80612956 Msa0576550:CDS
CTAAGCTACTAACATGATAC+TGG 0.420852 4_1:+80616163 Msa0576550:exon
CAAGCAAGGAGCTCCGACTC+TGG 0.421409 4_1:+80615987 Msa0576550:CDS
TCTAGAAACAGTAATATCTA+TGG 0.421471 4_1:+80615703 Msa0576550:CDS
GGAAACAAACCTCCAATTGC+TGG 0.426283 4_1:-80612968 None:intergenic
GACTTGGTGTTGAGACATCT+AGG 0.431266 4_1:-80615306 None:intergenic
AGCAACTGAAATGCGTCAAA+AGG 0.432522 4_1:+80614686 Msa0576550:CDS
GGTCCACTTTGGGCTTTGAT+GGG 0.433578 4_1:-80612221 None:intergenic
TTATGTGGAGAGGACGGAAT+TGG 0.433928 4_1:+80615191 Msa0576550:CDS
ATGGAAGACGCGCCTGGGCC+TGG 0.434330 4_1:+80613804 Msa0576550:CDS
CCGGGATGATTGGTCGGCAT+TGG 0.437047 4_1:-80612172 None:intergenic
TGCACCAAGTAAGATTTAGT+TGG 0.437384 4_1:-80616220 None:intergenic
TTTCCCAACTAAATCTTACT+TGG 0.440169 4_1:+80616216 Msa0576550:three_prime_UTR
GGATGATTGGTCGGCATTGG+AGG 0.440268 4_1:-80612169 None:intergenic
GAAAGATTGGAGCAAAACTA+AGG 0.441806 4_1:+80614959 Msa0576550:CDS
GCTATCACTGATAGCGTTTG+AGG 0.443329 4_1:-80615596 None:intergenic
ACTGTTGCCACAGATTCCTT+TGG 0.445592 4_1:+80615502 Msa0576550:CDS
GGCCCTTCAGGAGGGCGTCC+AGG 0.449188 4_1:+80613870 Msa0576550:CDS
TTATCCACAGTCACATCATC+TGG 0.450240 4_1:-80615391 None:intergenic
AGTGGTGCTTCGCATTTCTC+AGG 0.450950 4_1:-80612098 None:intergenic
TCTCAGGTAAAGTGATGAAA+TGG 0.452790 4_1:-80612082 None:intergenic
GGCCGACCGGTCCAAGGTCT+AGG 0.454820 4_1:-80612462 None:intergenic
GTGTGTAAGATCAAGTGTAT+AGG 0.456705 4_1:+80612915 Msa0576550:CDS
CTAATGTTCCTTGCGGTACA+AGG 0.457839 4_1:-80616125 None:intergenic
GCACCAAGTAAGATTTAGTT+GGG 0.460917 4_1:-80616219 None:intergenic
TTGAGTGCTGGGTGTGATTG+TGG 0.461423 4_1:-80612243 None:intergenic
GTGTGATTGTGGGTCCACTT+TGG 0.463252 4_1:-80612232 None:intergenic
TGAATCAGCCTAGGATATAC+TGG 0.464113 4_1:-80614633 None:intergenic
ACTACCACTGTTACCACAAA+AGG 0.467791 4_1:+80616021 Msa0576550:CDS
ACCGGTCCAAACGGAACAAA+AGG 0.468068 4_1:-80612432 None:intergenic
AGTCACATCATCTGGACAAA+AGG 0.468586 4_1:-80615383 None:intergenic
TCGGCATTGGAGGCGGAGAT+GGG 0.474440 4_1:-80612159 None:intergenic
TCTAGGTTGCCAATGGCGTT+AGG 0.477331 4_1:+80616332 Msa0576550:three_prime_UTR
GGCCCTTCTAGTGGGCGACT+TGG 0.482103 4_1:+80613849 Msa0576550:CDS
TGGATAATATACATGCTCAT+TGG 0.482159 4_1:+80612880 Msa0576550:CDS
TTCTTCTTACTCGGTGGAAG+TGG 0.483206 4_1:-80612486 None:intergenic
TCTTCCACCGCCGCATAAGA+AGG 0.484326 4_1:+80612533 Msa0576550:CDS
GGGGCAGCTGCCCTTGGTAG+CGG 0.486963 4_1:-80615784 None:intergenic
TGAGTGCTGGGTGTGATTGT+GGG 0.488863 4_1:-80612242 None:intergenic
CCCAGGCGCGTCTTCCATAA+GGG 0.489232 4_1:-80613799 None:intergenic
TTGTTTGTGGAGACAACAAC+CGG 0.489701 4_1:+80612008 Msa0576550:five_prime_UTR
TATGCTTTCTGAAGTTGTCC+TGG 0.490147 4_1:+80613828 Msa0576550:CDS
AACGGACCGGGAGACTGAAC+CGG 0.492536 4_1:-80612564 None:intergenic
ATATTTGAAAACTTGAGTGC+TGG 0.492635 4_1:-80612255 None:intergenic
CAATCATCCCGGCGGCCCAC+CGG 0.493542 4_1:+80612183 Msa0576550:CDS
TTTCGGATAACATTTGTTTG+TGG 0.493809 4_1:+80611995 Msa0576550:five_prime_UTR
CAATTATACCCAAATTGAGT+TGG 0.494110 4_1:-80612698 None:intergenic
TCATGTGAAATGGTCATACC+TGG 0.498243 4_1:-80615553 None:intergenic
GACCTGGACGCCCTCCTGAA+GGG 0.499373 4_1:-80613872 None:intergenic
CTGTGCCTCCAGTATATCCT+AGG 0.499758 4_1:+80614625 Msa0576550:CDS
TATGAAACATAGAAAGGTTG+CGG 0.499957 4_1:+80615951 Msa0576550:CDS
TGATTGGTCGGCATTGGAGG+CGG 0.500296 4_1:-80612166 None:intergenic
TCCTTGAGCTTCTTCTTACT+CGG 0.500433 4_1:-80612495 None:intergenic
ATAAAAGGGGCAGCTGCCCT+TGG 0.500507 4_1:-80615790 None:intergenic
GCATAAGAAGGGTGTTAAAC+CGG 0.501893 4_1:+80612545 Msa0576550:CDS
GAGTTGGCGACTAGATTTCA+AGG 0.502588 4_1:-80612682 None:intergenic
GTTAAACCGGTTCAGTCTCC+CGG 0.504707 4_1:+80612558 Msa0576550:CDS
AGATGATGTGACTGTGGATA+AGG 0.505613 4_1:+80615393 Msa0576550:CDS
ATGCTCATTGGAAGCGTCGA+AGG 0.505992 4_1:+80612892 Msa0576550:CDS
CATGTGTCAATGATGGGAAA+TGG 0.506011 4_1:+80616362 Msa0576550:three_prime_UTR
CTATCACTGATAGCGTTTGA+GGG 0.512363 4_1:-80615595 None:intergenic
GGACCTGGACGCCCTCCTGA+AGG 0.512654 4_1:-80613873 None:intergenic
TAACTGTATTTGAATTCGAA+TGG 0.521572 4_1:-80612366 None:intergenic
GTTTCTCTTGTCTCCAGAGT+CGG 0.522352 4_1:-80616000 None:intergenic
CAAGGTCTAGGCATAGTAAC+CGG 0.524988 4_1:-80612450 None:intergenic
GGGCCGCCGGGATGATTGGT+CGG 0.525780 4_1:-80612178 None:intergenic
AGATCTCGTAGAGGACTTCA+AGG 0.527014 4_1:+80615228 Msa0576550:CDS
ACACCCTTCTTATGCGGCGG+TGG 0.527518 4_1:-80612537 None:intergenic
GTGCCTACCATCATGTGAAA+TGG 0.530804 4_1:-80615563 None:intergenic
GGCATAGTAACCGGTCCAAA+CGG 0.531737 4_1:-80612441 None:intergenic
GGGCGACTTGGCCCTTCAGG+AGG 0.532030 4_1:+80613861 Msa0576550:CDS
GCAACTGAAATGCGTCAAAA+GGG 0.532555 4_1:+80614687 Msa0576550:CDS
TCTTGCAGCAACACCAGCCC+AGG 0.533340 4_1:+80615535 Msa0576550:CDS
AGGCGGTTCACGCATTTGAA+CGG 0.533757 4_1:-80612412 None:intergenic
ATAATGGATGACAAAGGCTT+CGG 0.534370 4_1:+80615634 Msa0576550:CDS
CAGAAAGCATATCCAGGCCC+AGG 0.534389 4_1:-80613816 None:intergenic
CGGTGGAAGTGGAGGCCGAC+CGG 0.534615 4_1:-80612475 None:intergenic
TTTGCACAATCAGCTCCACC+TGG 0.534985 4_1:+80615919 Msa0576550:CDS
TCAGGATCAAATGCAATGCT+AGG 0.535755 4_1:+80615679 Msa0576550:CDS
TGAAATGGTCATACCTGGGC+TGG 0.536670 4_1:-80615548 None:intergenic
CTAGGATATACTGGAGGCAC+AGG 0.537912 4_1:-80614624 None:intergenic
AGTTGTCCTGGCCCTTCTAG+TGG 0.538256 4_1:+80613840 Msa0576550:CDS
TTCTTACTCGGTGGAAGTGG+AGG 0.538836 4_1:-80612483 None:intergenic
GAAGGAGGAGATTAACGAGT+TGG 0.539096 4_1:+80612650 Msa0576550:CDS
CTCTAGACCTCACATACCTC+GGG 0.539303 4_1:-80612602 None:intergenic
TCATGTTCATGTGTCAATGA+TGG 0.542304 4_1:+80616355 Msa0576550:three_prime_UTR
TGAAATTCCTTTCATAAAAG+GGG 0.542344 4_1:-80615803 None:intergenic
GGAATCTGTGGCAACAGTTG+TGG 0.544190 4_1:-80615497 None:intergenic
CGGCATTGGAGGCGGAGATG+GGG 0.544434 4_1:-80612158 None:intergenic
GGCCAAGTCGCCCACTAGAA+GGG 0.546262 4_1:-80613851 None:intergenic
GCTACTAACATGATACTGGC+TGG 0.547532 4_1:+80616167 Msa0576550:exon
TTGACTCCCATATGCAAGCT+AGG 0.547827 4_1:+80614717 Msa0576550:CDS
TCTCTAGACCTCACATACCT+CGG 0.548055 4_1:-80612603 None:intergenic
TGAACATGACCTAACGCCAT+TGG 0.548819 4_1:-80616341 None:intergenic
GAGCCATTGAAAACAGAAAG+TGG 0.549756 4_1:-80612116 None:intergenic
CTGATGTCAGTCCGCTACCA+AGG 0.549768 4_1:+80615773 Msa0576550:CDS
TTAATATTCTAGGTTGCCAA+TGG 0.549855 4_1:+80616325 Msa0576550:three_prime_UTR
CCATTATATCCGAAGTTCCA+TGG 0.550672 4_1:-80615618 None:intergenic
AAGATACCTAGCTTGCATAT+GGG 0.550890 4_1:-80614723 None:intergenic
TATTTGAAAACTTGAGTGCT+GGG 0.551268 4_1:-80612254 None:intergenic
AGTCGCCCACTAGAAGGGCC+AGG 0.552621 4_1:-80613846 None:intergenic
GGAGGCGGAGATGGGGAAAG+TGG 0.552964 4_1:-80612151 None:intergenic
AAATTGCTTACATGCTCCAC+GGG 0.553218 4_1:-80615340 None:intergenic
CAGTGATAGCCATGGAACTT+CGG 0.559789 4_1:+80615609 Msa0576550:CDS
CTCTACGAGATCTGGAAAAG+AGG 0.565281 4_1:-80615218 None:intergenic
AGGAGTGTGTACGGTTGACA+TGG 0.566001 4_1:+80612935 Msa0576550:CDS
AGTGGAGGCCGACCGGTCCA+AGG 0.567389 4_1:-80612468 None:intergenic
TGCTCATTGGAAGCGTCGAA+GGG 0.567394 4_1:+80612893 Msa0576550:CDS
AAAATGAGCATATACTTATG+TGG 0.569102 4_1:+80615176 Msa0576550:CDS
GAGGTCTAGAGAAGAGGTGC+TGG 0.571023 4_1:+80612614 Msa0576550:CDS
CTTCCACCGCCGCATAAGAA+GGG 0.571336 4_1:+80612534 Msa0576550:CDS
CAAGTGTATAGGAGTGTGTA+CGG 0.572565 4_1:+80612926 Msa0576550:CDS
GGTGCCACCGTTGCCACGAA+AGG 0.573267 4_1:+80616042 Msa0576550:CDS
GTTGTCCTGGCCCTTCTAGT+GGG 0.574095 4_1:+80613841 Msa0576550:CDS
CAACTTCAGAAAGCATATCC+AGG 0.577119 4_1:-80613822 None:intergenic
GGGAAAGTCATTTACAGAAG+AGG 0.578116 4_1:+80614525 Msa0576550:CDS
GGTATGACCATTTCACATGA+TGG 0.581038 4_1:+80615556 Msa0576550:CDS
GATGACAAAGGCTTCGGTGA+CGG 0.583899 4_1:+80615640 Msa0576550:CDS
CTGATTCAGCAAGTTCCAGA+AGG 0.586287 4_1:+80614648 Msa0576550:CDS
GAAATGGTTTGTAGATGAGA+TGG 0.586476 4_1:+80616378 Msa0576550:three_prime_UTR
GGAACTTGCTGAATCAGCCT+AGG 0.591995 4_1:-80614642 None:intergenic
CTAGTACGTGTAAACTGTCA+AGG 0.592715 4_1:+80614916 Msa0576550:CDS
GGCGACTTGGCCCTTCAGGA+GGG 0.594942 4_1:+80613862 Msa0576550:CDS
TGGTTTCATACATAACATGT+TGG 0.595215 4_1:+80612860 Msa0576550:CDS
TTGGAGCAAGCTGTTGAGCA+AGG 0.595824 4_1:+80615832 Msa0576550:CDS
TGCCTAGACCTTGGACCGGT+CGG 0.596915 4_1:+80612460 Msa0576550:CDS
TGATGTCAGTCCGCTACCAA+GGG 0.598885 4_1:+80615774 Msa0576550:CDS
AAAGATTGGAGCAAAACTAA+GGG 0.600758 4_1:+80614960 Msa0576550:CDS
GCAAGATTCTGGCTCACCAA+AGG 0.601216 4_1:-80615518 None:intergenic
TTCGCCGACGGCAGTGACAC+CGG 0.601902 4_1:-80612027 None:intergenic
CCTTGTAAACAATGTTAGAG+AGG 0.603253 4_1:+80614876 Msa0576550:CDS
TGGCTCACCAAAGGAATCTG+TGG 0.603601 4_1:-80615509 None:intergenic
GGTTTAACACCCTTCTTATG+CGG 0.604421 4_1:-80612543 None:intergenic
AAACCCATCAAAGCCCAAAG+TGG 0.605944 4_1:+80612218 Msa0576550:CDS
TTGAGCTTCTTCTTACTCGG+TGG 0.606500 4_1:-80612492 None:intergenic
TTAACACCCTTCTTATGCGG+CGG 0.607323 4_1:-80612540 None:intergenic
CATGTTCATGTGTCAATGAT+GGG 0.607610 4_1:+80616356 Msa0576550:three_prime_UTR
TAATGTGTGCCAGCAATTGG+AGG 0.608720 4_1:+80612959 Msa0576550:CDS
GTATGTGAGGTCTAGAGAAG+AGG 0.609518 4_1:+80612608 Msa0576550:CDS
CTGAAATGCGTCAAAAGGGA+AGG 0.611815 4_1:+80614691 Msa0576550:CDS
GAGATGGAATTCAATACTGT+AGG 0.613456 4_1:+80616394 Msa0576550:three_prime_UTR
AACGCTATCAGTGATAGCCA+TGG 0.614164 4_1:+80615601 Msa0576550:CDS
CGGTTACTATGCCTAGACCT+TGG 0.615305 4_1:+80612451 Msa0576550:CDS
ACTTGGTGTTGAGACATCTA+GGG 0.616808 4_1:-80615305 None:intergenic
TTTGAGCGATTCTTCGCCGA+CGG 0.618712 4_1:-80612039 None:intergenic
TAATAACAAAAGTAGTGCAA+AGG 0.619936 4_1:-80616286 None:intergenic
TAAATTGCTTACATGCTCCA+CGG 0.621143 4_1:-80615341 None:intergenic
TGACCATTTCACATGATGGT+AGG 0.621478 4_1:+80615560 Msa0576550:CDS
CCAATGCCGACCAATCATCC+CGG 0.627190 4_1:+80612172 Msa0576550:CDS
TCGTATGAAAGCAATGTGCA+CGG 0.634544 4_1:-80615154 None:intergenic
ACGGGATTATGATGTAGACT+TGG 0.635250 4_1:-80615322 None:intergenic
GGGTGAACCATTGACGAAGG+AGG 0.638102 4_1:+80612635 Msa0576550:CDS
ACAGGTTTCCACAACATGAG+AGG 0.638337 4_1:-80614606 None:intergenic
AGGTGGAGCTGATTGTGCAA+AGG 0.640772 4_1:-80615917 None:intergenic
TATCACTGATAGCGTTTGAG+GGG 0.640836 4_1:-80615594 None:intergenic
ATATACTTATGTGGAGAGGA+CGG 0.645216 4_1:+80615185 Msa0576550:CDS
ACCGAGTAAGAAGAAGCTCA+AGG 0.645702 4_1:+80612494 Msa0576550:CDS
TTTATGAACCTTGTACCGCA+AGG 0.645731 4_1:+80616117 Msa0576550:CDS
GAACTAGCCCGAGGTATGTG+AGG 0.648261 4_1:+80612595 Msa0576550:CDS
TTTACCTTTCGTGGCAACGG+TGG 0.650740 4_1:-80616046 None:intergenic
AAGTGATGAAATGGAGTGAG+TGG 0.654176 4_1:-80612073 None:intergenic
AAAGTCATTTACAGAAGAGG+CGG 0.657072 4_1:+80614528 Msa0576550:CDS
AAATAGCGAGCAATCTATGT+CGG 0.658559 4_1:+80615432 Msa0576550:CDS
GGTGTCTCCTACGTAATCGA+AGG 0.664429 4_1:+80612339 Msa0576550:CDS
ACAACCGGTGTCACTGCCGT+CGG 0.666587 4_1:+80612023 Msa0576550:five_prime_UTR
CACAACATGAGAGGAAAACG+CGG 0.666781 4_1:-80614597 None:intergenic
TAGCGAGCAATCTATGTCGG+TGG 0.671346 4_1:+80615435 Msa0576550:CDS
TCGGATATAATGGATGACAA+AGG 0.673893 4_1:+80615628 Msa0576550:CDS
AGGATTCTGGAGAATAAGTG+AGG 0.674263 4_1:+80613771 Msa0576550:CDS
GGTCCAAACGGAACAAAAGG+CGG 0.675622 4_1:-80612429 None:intergenic
AGGTCTAGAGAAGAGGTGCT+GGG 0.678543 4_1:+80612615 Msa0576550:CDS
ACTATGCCTAGACCTTGGAC+CGG 0.679849 4_1:+80612456 Msa0576550:CDS
TTTAGCAACTCATCAGCGTG+AGG 0.690806 4_1:-80615736 None:intergenic
TCAACTCCTAATGTTCCTTG+CGG 0.692862 4_1:-80616132 None:intergenic
GCTGGGTGAACCATTGACGA+AGG 0.693762 4_1:+80612632 Msa0576550:CDS
AAGTCTACATCATAATCCCG+TGG 0.695568 4_1:+80615324 Msa0576550:CDS
GAGCATATACTTATGTGGAG+AGG 0.696995 4_1:+80615181 Msa0576550:CDS
TTGTCCAGATGATGTGACTG+TGG 0.698969 4_1:+80615387 Msa0576550:CDS
ACAACATGAGAGGAAAACGC+GGG 0.708042 4_1:-80614596 None:intergenic
GTTGCTAAATGATTCAGGAG+CGG 0.708268 4_1:+80615750 Msa0576550:CDS
CAGTAATATCTATGGCACAG+TGG 0.711051 4_1:+80615711 Msa0576550:CDS
ATTCTGGAGAATAAGTGAGG+CGG 0.713697 4_1:+80613774 Msa0576550:CDS
CATGTGAAATGGTCATACCT+GGG 0.722805 4_1:-80615552 None:intergenic
TGATTGTGCAAAGGAAACTG+TGG 0.731642 4_1:-80615908 None:intergenic
TGGAGCACCTTCGATTACGT+AGG 0.737295 4_1:-80612346 None:intergenic
ATGCCGACCAATCATCCCGG+CGG 0.738030 4_1:+80612175 Msa0576550:CDS
ATCAGCCTAGGATATACTGG+AGG 0.738178 4_1:-80614630 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTATCTTAATATTCT+AGG + chr4_1:80616315-80616334 Msa0576550:three_prime_UTR 10.0%
!!! CTTAATTTTATAGAAAGAAA+AGG - chr4_1:80613150-80613169 None:intergenic 15.0%
!! CTTTCTATAAAATTAAGTTA+TGG + chr4_1:80613153-80613172 Msa0576550:intron 15.0%
!! ATGAATATATTATAATGAAG+TGG - chr4_1:80613939-80613958 None:intergenic 15.0%
!! AATTAAATAAACATGTGTAT+CGG - chr4_1:80614811-80614830 None:intergenic 15.0%
!!! TTTATTTTTTTTTTGGTCAT+AGG + chr4_1:80615038-80615057 Msa0576550:intron 15.0%
!!! TTCACTGATTTTTACATTTT+CGG - chr4_1:80612316-80612335 None:intergenic 20.0%
!! ATGGAATGATAAAAGAAAAA+TGG + chr4_1:80613172-80613191 Msa0576550:intron 20.0%
!! TGGAATGATAAAAGAAAAAT+GGG + chr4_1:80613173-80613192 Msa0576550:intron 20.0%
!! AAAGAAAATGAAACTAATCA+AGG - chr4_1:80613267-80613286 None:intergenic 20.0%
!!! TTAGTTTCATTTTCTTTAAG+TGG + chr4_1:80613270-80613289 Msa0576550:intron 20.0%
!!! AATTTTATCATCAATACCAA+TGG - chr4_1:80614005-80614024 None:intergenic 20.0%
!!! TGGTATTGATGATAAAATTT+AGG + chr4_1:80614006-80614025 Msa0576550:intron 20.0%
!!! ATTGATGATAAAATTTAGGA+CGG + chr4_1:80614010-80614029 Msa0576550:intron 20.0%
!! AAGAGGAATATAAACAATAA+AGG - chr4_1:80614471-80614490 None:intergenic 20.0%
!! TATAATTGTAATTTCTTCCT+CGG - chr4_1:80614569-80614588 None:intergenic 20.0%
!! ATGAAATTCCTTTCATAAAA+GGG - chr4_1:80615807-80615826 None:intergenic 20.0%
!! AATGAAATTCCTTTCATAAA+AGG - chr4_1:80615808-80615827 None:intergenic 20.0%
!!! TGTTTTAGATAAAGATTCTT+TGG + chr4_1:80615864-80615883 Msa0576550:CDS 20.0%
!! TTTCTATGTTTCATAAAAAC+AGG - chr4_1:80615946-80615965 None:intergenic 20.0%
!!! TGTTTTTATGAAACATAGAA+AGG + chr4_1:80615945-80615964 Msa0576550:CDS 20.0%
!!! TCACTGATTTTTACATTTTC+GGG - chr4_1:80612315-80612334 None:intergenic 25.0%
! AATGTAAAAATCAGTGAAGA+CGG + chr4_1:80612318-80612337 Msa0576550:CDS 25.0%
! TAACTGTATTTGAATTCGAA+TGG - chr4_1:80612369-80612388 None:intergenic 25.0%
! ATGATAAAAGAAAAATGGGT+CGG + chr4_1:80613177-80613196 Msa0576550:intron 25.0%
! AAATACACAAAGGCAATTTA+AGG - chr4_1:80613300-80613319 None:intergenic 25.0%
! ATTTGTTTCAATGTGAATGT+GGG - chr4_1:80613437-80613456 None:intergenic 25.0%
! TATTTGTTTCAATGTGAATG+TGG - chr4_1:80613438-80613457 None:intergenic 25.0%
!! AGTCTTTAGGAATATTATGA+CGG + chr4_1:80613912-80613931 Msa0576550:intron 25.0%
! TGTGAGCAAATGATAATATT+GGG - chr4_1:80614331-80614350 None:intergenic 25.0%
! ATGTGAGCAAATGATAATAT+TGG - chr4_1:80614332-80614351 None:intergenic 25.0%
! GGAATATAAACAATAAAGGT+TGG - chr4_1:80614467-80614486 None:intergenic 25.0%
! AAAATGAGCATATACTTATG+TGG + chr4_1:80615176-80615195 Msa0576550:CDS 25.0%
! TCTAGAAACAGTAATATCTA+TGG + chr4_1:80615703-80615722 Msa0576550:CDS 25.0%
! TGAAATTCCTTTCATAAAAG+GGG - chr4_1:80615806-80615825 None:intergenic 25.0%
!! TTTTCTTTTCTTCGAATTCT+AGG - chr4_1:80616084-80616103 None:intergenic 25.0%
!!! GAAAAGAAAATTTTGATGAG+CGG + chr4_1:80616094-80616113 Msa0576550:CDS 25.0%
! TAATAACAAAAGTAGTGCAA+AGG - chr4_1:80616289-80616308 None:intergenic 25.0%
! ACACATAGTCTTGATTGTTT+CGG + chr4_1:80611978-80611997 Msa0576550:five_prime_UTR 30.0%
TTTCGGATAACATTTGTTTG+TGG + chr4_1:80611995-80612014 Msa0576550:five_prime_UTR 30.0%
TATTTGAAAACTTGAGTGCT+GGG - chr4_1:80612257-80612276 None:intergenic 30.0%
ATATTTGAAAACTTGAGTGC+TGG - chr4_1:80612258-80612277 None:intergenic 30.0%
!!! ACTGGTTTTAGTTTCTGTTT+GGG - chr4_1:80612282-80612301 None:intergenic 30.0%
!!! AACTGGTTTTAGTTTCTGTT+TGG - chr4_1:80612283-80612302 None:intergenic 30.0%
!! ACTGATTTTTACATTTTCGG+GGG - chr4_1:80612313-80612332 None:intergenic 30.0%
!!! CACTGATTTTTACATTTTCG+GGG - chr4_1:80612314-80612333 None:intergenic 30.0%
CAATTATACCCAAATTGAGT+TGG - chr4_1:80612701-80612720 None:intergenic 30.0%
AAACATAATCTACGCATCAT+TGG - chr4_1:80612793-80612812 None:intergenic 30.0%
TTAATGCACATGACACAAAA+TGG - chr4_1:80612827-80612846 None:intergenic 30.0%
! GTGTCATGTGCATTAATTTT+AGG + chr4_1:80612831-80612850 Msa0576550:intron 30.0%
!! GCATTAATTTTAGGTAGAGA+TGG + chr4_1:80612840-80612859 Msa0576550:intron 30.0%
TGGTTTCATACATAACATGT+TGG + chr4_1:80612860-80612879 Msa0576550:CDS 30.0%
TGGATAATATACATGCTCAT+TGG + chr4_1:80612880-80612899 Msa0576550:CDS 30.0%
CTAGAATCAAGATGATAAAC+TGG - chr4_1:80613014-80613033 None:intergenic 30.0%
GTTTATCATCTTGATTCTAG+AGG + chr4_1:80613014-80613033 Msa0576550:intron 30.0%
TGATAAAAGAAAAATGGGTC+GGG + chr4_1:80613178-80613197 Msa0576550:intron 30.0%
!! GAACAAAGGAGTGTTAAAAA+CGG - chr4_1:80613233-80613252 None:intergenic 30.0%
TTTAACACTCCTTTGTTCAT+TGG + chr4_1:80613235-80613254 Msa0576550:intron 30.0%
AATATCAAACAAACAAGCAC+AGG - chr4_1:80613330-80613349 None:intergenic 30.0%
GTGCTTGTTTGTTTGATATT+TGG + chr4_1:80613330-80613349 Msa0576550:intron 30.0%
GAAACAAATCTCAAACAAAC+AGG - chr4_1:80613368-80613387 None:intergenic 30.0%
! TTTTGCAAGTACATGAAGTA+TGG - chr4_1:80613594-80613613 None:intergenic 30.0%
TCATGTACTTGCAAAAAGTA+CGG + chr4_1:80613598-80613617 Msa0576550:intron 30.0%
TAAGGAATACTAGGATTCTA+GGG + chr4_1:80613621-80613640 Msa0576550:intron 30.0%
TTTATCATCAATACCAATGG+TGG - chr4_1:80614002-80614021 None:intergenic 30.0%
! ATGATAAAATTTAGGACGGA+TGG + chr4_1:80614014-80614033 Msa0576550:intron 30.0%
TGATTGAGAAATGCTAGATT+TGG + chr4_1:80614043-80614062 Msa0576550:intron 30.0%
GATTGAGAAATGCTAGATTT+GGG + chr4_1:80614044-80614063 Msa0576550:intron 30.0%
AATTAACCTACAATCAGTGA+CGG - chr4_1:80614299-80614318 None:intergenic 30.0%
ATGTGTATCGGAAGAATAAA+AGG - chr4_1:80614799-80614818 None:intergenic 30.0%
!!! ATTTTTTTCCTTCTTGCAAC+AGG + chr4_1:80614832-80614851 Msa0576550:intron 30.0%
AAAAGTGACTATCGAAAGAT+TGG + chr4_1:80614946-80614965 Msa0576550:CDS 30.0%
AAAGATTGGAGCAAAACTAA+GGG + chr4_1:80614960-80614979 Msa0576550:CDS 30.0%
GAAAGGAATTTCATTGCTAT+TGG + chr4_1:80615813-80615832 Msa0576550:CDS 30.0%
TATGAAACATAGAAAGGTTG+CGG + chr4_1:80615951-80615970 Msa0576550:CDS 30.0%
TTTCCCAACTAAATCTTACT+TGG + chr4_1:80616216-80616235 Msa0576550:three_prime_UTR 30.0%
TTAATATTCTAGGTTGCCAA+TGG + chr4_1:80616325-80616344 Msa0576550:three_prime_UTR 30.0%
TCTCAGGTAAAGTGATGAAA+TGG - chr4_1:80612085-80612104 None:intergenic 35.0%
! ATTTGAACGGGTTTGGATTT+AGG - chr4_1:80612402-80612421 None:intergenic 35.0%
GATGCGTAGATTATGTTTGT+AGG + chr4_1:80612795-80612814 Msa0576550:intron 35.0%
GTGTGTAAGATCAAGTGTAT+AGG + chr4_1:80612915-80612934 Msa0576550:CDS 35.0%
GATAAAAGAAAAATGGGTCG+GGG + chr4_1:80613179-80613198 Msa0576550:intron 35.0%
AGGAATATGCCAATGAACAA+AGG - chr4_1:80613247-80613266 None:intergenic 35.0%
AGGACATAGCAAATACACAA+AGG - chr4_1:80613310-80613329 None:intergenic 35.0%
! TGCATTTTCTTCTGTTTGTG+GGG - chr4_1:80613390-80613409 None:intergenic 35.0%
! CTGCATTTTCTTCTGTTTGT+GGG - chr4_1:80613391-80613410 None:intergenic 35.0%
TCAATGTGAATGTGGGAATT+TGG - chr4_1:80613430-80613449 None:intergenic 35.0%
AGTCAAAGATACCAAGACAA+AGG - chr4_1:80613481-80613500 None:intergenic 35.0%
TTGTCTTGGTATCTTTGACT+AGG + chr4_1:80613481-80613500 Msa0576550:intron 35.0%
TGTCTTGGTATCTTTGACTA+GGG + chr4_1:80613482-80613501 Msa0576550:intron 35.0%
ACTAAGCCACAACTTACTAA+GGG - chr4_1:80613511-80613530 None:intergenic 35.0%
! TACTTGCAAAAAGTACGGTA+AGG + chr4_1:80613603-80613622 Msa0576550:intron 35.0%
AAAGTACGGTAAGGAATACT+AGG + chr4_1:80613612-80613631 Msa0576550:intron 35.0%
GTAAGGAATACTAGGATTCT+AGG + chr4_1:80613620-80613639 Msa0576550:intron 35.0%
CTAGGGTTTAGACTGATTAT+TGG + chr4_1:80613638-80613657 Msa0576550:intron 35.0%
GGTTTAGACTGATTATTGGA+TGG + chr4_1:80613642-80613661 Msa0576550:intron 35.0%
AGGTATTTATAGCCTGCTAT+GGG + chr4_1:80613685-80613704 Msa0576550:intron 35.0%
!!! ACAGGGGTATTTACGTATTT+TGG + chr4_1:80613738-80613757 Msa0576550:intron 35.0%
!!! CAGGGGTATTTACGTATTTT+GGG + chr4_1:80613739-80613758 Msa0576550:intron 35.0%
!!! CGTATTTTGGGTGTTTTTAG+AGG + chr4_1:80613751-80613770 Msa0576550:CDS 35.0%
! AAATTTAGGACGGATGGATA+TGG + chr4_1:80614020-80614039 Msa0576550:intron 35.0%
GAAGAAGAACATATGACAAG+AGG - chr4_1:80614116-80614135 None:intergenic 35.0%
AATTAAAGACACTGACACAG+CGG - chr4_1:80614247-80614266 None:intergenic 35.0%
!! TTGATGATGGAACATAGGAT+TGG + chr4_1:80614401-80614420 Msa0576550:intron 35.0%
! GATTGGTGGATATGAAGATT+GGG + chr4_1:80614418-80614437 Msa0576550:intron 35.0%
! ATTGGTGGATATGAAGATTG+GGG + chr4_1:80614419-80614438 Msa0576550:intron 35.0%
AGATTGGGGAAATGGAAATA+TGG + chr4_1:80614433-80614452 Msa0576550:intron 35.0%
ATTCCTCTTGACATATGTTG+TGG + chr4_1:80614482-80614501 Msa0576550:intron 35.0%
AAACCACAACATATGTCAAG+AGG - chr4_1:80614488-80614507 None:intergenic 35.0%
AAAGTCATTTACAGAAGAGG+CGG + chr4_1:80614528-80614547 Msa0576550:CDS 35.0%
TGTAATTTCTTCCTCGGAAA+AGG - chr4_1:80614563-80614582 None:intergenic 35.0%
TCTTCTAACGTTAAACCTTC+TGG - chr4_1:80614666-80614685 None:intergenic 35.0%
! AAGATACCTAGCTTGCATAT+GGG - chr4_1:80614726-80614745 None:intergenic 35.0%
! AAAGATACCTAGCTTGCATA+TGG - chr4_1:80614727-80614746 None:intergenic 35.0%
! GCAAGCTAGGTATCTTTTTA+AGG + chr4_1:80614730-80614749 Msa0576550:intron 35.0%
!!! CATTTTTTCCTGTTGCAAGA+AGG - chr4_1:80614843-80614862 None:intergenic 35.0%
CTTCTTGCAACAGGAAAAAA+TGG + chr4_1:80614841-80614860 Msa0576550:intron 35.0%
CCTCTCTAACATTGTTTACA+AGG - chr4_1:80614879-80614898 None:intergenic 35.0%
CCTTGTAAACAATGTTAGAG+AGG + chr4_1:80614876-80614895 Msa0576550:CDS 35.0%
GAAAGATTGGAGCAAAACTA+AGG + chr4_1:80614959-80614978 Msa0576550:CDS 35.0%
TTCAACACTTGATGCAAAGT+TGG - chr4_1:80614991-80615010 None:intergenic 35.0%
CATAGGATAGACATGTATCA+TGG + chr4_1:80615055-80615074 Msa0576550:intron 35.0%
TACACATGTTCTTTGACTGT+AGG + chr4_1:80615123-80615142 Msa0576550:intron 35.0%
ATATACTTATGTGGAGAGGA+CGG + chr4_1:80615185-80615204 Msa0576550:CDS 35.0%
TAAATTGCTTACATGCTCCA+CGG - chr4_1:80615344-80615363 None:intergenic 35.0%
!! CATAGATTGCTCGCTATTTT+CGG - chr4_1:80615431-80615450 None:intergenic 35.0%
AAATAGCGAGCAATCTATGT+CGG + chr4_1:80615432-80615451 Msa0576550:CDS 35.0%
!! TCGGATATAATGGATGACAA+AGG + chr4_1:80615628-80615647 Msa0576550:CDS 35.0%
!! ATAATGGATGACAAAGGCTT+CGG + chr4_1:80615634-80615653 Msa0576550:CDS 35.0%
GGTCTTTCTACTTCAATTTC+AGG + chr4_1:80615661-80615680 Msa0576550:CDS 35.0%
GATGAGTTGCTAAATGATTC+AGG + chr4_1:80615745-80615764 Msa0576550:CDS 35.0%
TGTTTCATAAAAACAGGTCC+AGG - chr4_1:80615940-80615959 None:intergenic 35.0%
GTTCAAAAAAGTGACAAGCA+AGG + chr4_1:80615973-80615992 Msa0576550:CDS 35.0%
CTAAGCTACTAACATGATAC+TGG + chr4_1:80616163-80616182 Msa0576550:exon 35.0%
TGGGAAAAAATACACTCTGA+TGG - chr4_1:80616203-80616222 None:intergenic 35.0%
GCACCAAGTAAGATTTAGTT+GGG - chr4_1:80616222-80616241 None:intergenic 35.0%
TGCACCAAGTAAGATTTAGT+TGG - chr4_1:80616223-80616242 None:intergenic 35.0%
TCATGTTCATGTGTCAATGA+TGG + chr4_1:80616355-80616374 Msa0576550:three_prime_UTR 35.0%
CATGTTCATGTGTCAATGAT+GGG + chr4_1:80616356-80616375 Msa0576550:three_prime_UTR 35.0%
! GAAATGGTTTGTAGATGAGA+TGG + chr4_1:80616378-80616397 Msa0576550:three_prime_UTR 35.0%
GAGATGGAATTCAATACTGT+AGG + chr4_1:80616394-80616413 Msa0576550:three_prime_UTR 35.0%
TTGTTTGTGGAGACAACAAC+CGG + chr4_1:80612008-80612027 Msa0576550:five_prime_UTR 40.0%
AAGTGATGAAATGGAGTGAG+TGG - chr4_1:80612076-80612095 None:intergenic 40.0%
! GCACCACTTTCTGTTTTCAA+TGG + chr4_1:80612113-80612132 Msa0576550:exon 40.0%
GAGCCATTGAAAACAGAAAG+TGG - chr4_1:80612119-80612138 None:intergenic 40.0%
!!! GGCTTTGATGGGTTTTTGTT+GGG - chr4_1:80612213-80612232 None:intergenic 40.0%
!!! TTTTCGGGGGTTTTGTTAAC+TGG - chr4_1:80612300-80612319 None:intergenic 40.0%
GGGTTTGGATTTAGGAGTTT+CGG - chr4_1:80612394-80612413 None:intergenic 40.0%
TCCTTGAGCTTCTTCTTACT+CGG - chr4_1:80612498-80612517 None:intergenic 40.0%
GGTTTAACACCCTTCTTATG+CGG - chr4_1:80612546-80612565 None:intergenic 40.0%
!! GCATAAGAAGGGTGTTAAAC+CGG + chr4_1:80612545-80612564 Msa0576550:CDS 40.0%
TTAATCTCCTCCTTCGTCAA+TGG - chr4_1:80612645-80612664 None:intergenic 40.0%
ATCTAGTCGCCAACTCAATT+TGG + chr4_1:80612689-80612708 Msa0576550:CDS 40.0%
TCTAGTCGCCAACTCAATTT+GGG + chr4_1:80612690-80612709 Msa0576550:CDS 40.0%
! CAAGTGTATAGGAGTGTGTA+CGG + chr4_1:80612926-80612945 Msa0576550:CDS 40.0%
AAACTGGTTACACGCTATGA+GGG - chr4_1:80612998-80613017 None:intergenic 40.0%
TAAACTGGTTACACGCTATG+AGG - chr4_1:80612999-80613018 None:intergenic 40.0%
! GCTGCATTTTCTTCTGTTTG+TGG - chr4_1:80613392-80613411 None:intergenic 40.0%
CAGATTGTAAGCCTTTGTCT+TGG + chr4_1:80613467-80613486 Msa0576550:intron 40.0%
GTCTTGGTATCTTTGACTAG+GGG + chr4_1:80613483-80613502 Msa0576550:intron 40.0%
TAAGCCACAACTTACTAAGG+GGG - chr4_1:80613509-80613528 None:intergenic 40.0%
CTAAGCCACAACTTACTAAG+GGG - chr4_1:80613510-80613529 None:intergenic 40.0%
CACTAAGCCACAACTTACTA+AGG - chr4_1:80613512-80613531 None:intergenic 40.0%
TAAGTTGTGGCTTAGTGTCT+TGG + chr4_1:80613515-80613534 Msa0576550:intron 40.0%
GAAGCCAACTACCAGAATTA+TGG - chr4_1:80613550-80613569 None:intergenic 40.0%
! GAGGTATTTATAGCCTGCTA+TGG + chr4_1:80613684-80613703 Msa0576550:intron 40.0%
!!! TGGGTGTTTTTAGAGGATTC+TGG + chr4_1:80613758-80613777 Msa0576550:CDS 40.0%
! AGGATTCTGGAGAATAAGTG+AGG + chr4_1:80613771-80613790 Msa0576550:CDS 40.0%
! ATTCTGGAGAATAAGTGAGG+CGG + chr4_1:80613774-80613793 Msa0576550:CDS 40.0%
! CAACTTCAGAAAGCATATCC+AGG - chr4_1:80613825-80613844 None:intergenic 40.0%
!! TATGCTTTCTGAAGTTGTCC+TGG + chr4_1:80613828-80613847 Msa0576550:CDS 40.0%
AGACTCAAAATCCCTCCATA+AGG - chr4_1:80613897-80613916 None:intergenic 40.0%
!! TGGAGGGATTTTGAGTCTTT+AGG + chr4_1:80613899-80613918 Msa0576550:intron 40.0%
CAATGGTGGTTCGTGATTAA+GGG - chr4_1:80613988-80614007 None:intergenic 40.0%
TGAGAAATGCTAGATTTGGG+AGG + chr4_1:80614047-80614066 Msa0576550:intron 40.0%
ATGCTAGATTTGGGAGGAAA+TGG + chr4_1:80614053-80614072 Msa0576550:intron 40.0%
ATAGCCAAAGACATTAGGGA+GGG - chr4_1:80614165-80614184 None:intergenic 40.0%
AATAGCCAAAGACATTAGGG+AGG - chr4_1:80614166-80614185 None:intergenic 40.0%
GGGAATAGCCAAAGACATTA+GGG - chr4_1:80614169-80614188 None:intergenic 40.0%
AGGGAATAGCCAAAGACATT+AGG - chr4_1:80614170-80614189 None:intergenic 40.0%
!! GAATGAGAGACTTGCTGTTA+GGG - chr4_1:80614277-80614296 None:intergenic 40.0%
GGTGGACAATTGACAATTGA+TGG - chr4_1:80614371-80614390 None:intergenic 40.0%
!! GGGTATTGATGATGGAACAT+AGG + chr4_1:80614396-80614415 Msa0576550:intron 40.0%
! ATGATGGAACATAGGATTGG+TGG + chr4_1:80614404-80614423 Msa0576550:intron 40.0%
! GGATTGGTGGATATGAAGAT+TGG + chr4_1:80614417-80614436 Msa0576550:intron 40.0%
GGATATGAAGATTGGGGAAA+TGG + chr4_1:80614425-80614444 Msa0576550:intron 40.0%
! GACATATGTTGTGGTTTTCC+AGG + chr4_1:80614491-80614510 Msa0576550:intron 40.0%
! TTTTCCAGGAAAAGACAGGA+GGG + chr4_1:80614505-80614524 Msa0576550:intron 40.0%
GGGAAAGTCATTTACAGAAG+AGG + chr4_1:80614525-80614544 Msa0576550:CDS 40.0%
!! GGTGTTATATACCTTTTCCG+AGG + chr4_1:80614549-80614568 Msa0576550:CDS 40.0%
TGAATCAGCCTAGGATATAC+TGG - chr4_1:80614636-80614655 None:intergenic 40.0%
AGCAACTGAAATGCGTCAAA+AGG + chr4_1:80614686-80614705 Msa0576550:CDS 40.0%
GCAACTGAAATGCGTCAAAA+GGG + chr4_1:80614687-80614706 Msa0576550:CDS 40.0%
CTAGTACGTGTAAACTGTCA+AGG + chr4_1:80614916-80614935 Msa0576550:CDS 40.0%
!! ATCAAGTGTTGAAGAGCACT+TGG + chr4_1:80614998-80615017 Msa0576550:intron 40.0%
!! AAGAGCACTTGGATTCTTCT+TGG + chr4_1:80615009-80615028 Msa0576550:intron 40.0%
TCGTATGAAAGCAATGTGCA+CGG - chr4_1:80615157-80615176 None:intergenic 40.0%
GAGCATATACTTATGTGGAG+AGG + chr4_1:80615181-80615200 Msa0576550:CDS 40.0%
!! ACTTGGTGTTGAGACATCTA+GGG - chr4_1:80615308-80615327 None:intergenic 40.0%
ACGGGATTATGATGTAGACT+TGG - chr4_1:80615325-80615344 None:intergenic 40.0%
AAGTCTACATCATAATCCCG+TGG + chr4_1:80615324-80615343 Msa0576550:CDS 40.0%
AAATTGCTTACATGCTCCAC+GGG - chr4_1:80615343-80615362 None:intergenic 40.0%
AGTCACATCATCTGGACAAA+AGG - chr4_1:80615386-80615405 None:intergenic 40.0%
TTATCCACAGTCACATCATC+TGG - chr4_1:80615394-80615413 None:intergenic 40.0%
AGATGATGTGACTGTGGATA+AGG + chr4_1:80615393-80615412 Msa0576550:CDS 40.0%
CATGTGAAATGGTCATACCT+GGG - chr4_1:80615555-80615574 None:intergenic 40.0%
TCATGTGAAATGGTCATACC+TGG - chr4_1:80615556-80615575 None:intergenic 40.0%
GGTATGACCATTTCACATGA+TGG + chr4_1:80615556-80615575 Msa0576550:CDS 40.0%
TGACCATTTCACATGATGGT+AGG + chr4_1:80615560-80615579 Msa0576550:CDS 40.0%
! TATCACTGATAGCGTTTGAG+GGG - chr4_1:80615597-80615616 None:intergenic 40.0%
! CTATCACTGATAGCGTTTGA+GGG - chr4_1:80615598-80615617 None:intergenic 40.0%
CCATTATATCCGAAGTTCCA+TGG - chr4_1:80615621-80615640 None:intergenic 40.0%
CCATGGAACTTCGGATATAA+TGG + chr4_1:80615618-80615637 Msa0576550:CDS 40.0%
TCAGGATCAAATGCAATGCT+AGG + chr4_1:80615679-80615698 Msa0576550:CDS 40.0%
CAGTAATATCTATGGCACAG+TGG + chr4_1:80615711-80615730 Msa0576550:CDS 40.0%
GTTGCTAAATGATTCAGGAG+CGG + chr4_1:80615750-80615769 Msa0576550:CDS 40.0%
TGATTGTGCAAAGGAAACTG+TGG - chr4_1:80615911-80615930 None:intergenic 40.0%
TTCATAAAAACAGGTCCAGG+TGG - chr4_1:80615937-80615956 None:intergenic 40.0%
ACTACCACTGTTACCACAAA+AGG + chr4_1:80616021-80616040 Msa0576550:CDS 40.0%
! CTTTTTACCTTTCGTGGCAA+CGG - chr4_1:80616052-80616071 None:intergenic 40.0%
TTTATGAACCTTGTACCGCA+AGG + chr4_1:80616117-80616136 Msa0576550:CDS 40.0%
TCAACTCCTAATGTTCCTTG+CGG - chr4_1:80616135-80616154 None:intergenic 40.0%
! CATGTGTCAATGATGGGAAA+TGG + chr4_1:80616362-80616381 Msa0576550:three_prime_UTR 40.0%
! TTTTTGTTGGGCTTTCCGGT+GGG - chr4_1:80612201-80612220 None:intergenic 45.0%
! TGGGTTTTTGTTGGGCTTTC+CGG - chr4_1:80612205-80612224 None:intergenic 45.0%
!!! GGGCTTTGATGGGTTTTTGT+TGG - chr4_1:80612214-80612233 None:intergenic 45.0%
AAACCCATCAAAGCCCAAAG+TGG + chr4_1:80612218-80612237 Msa0576550:CDS 45.0%
TGTGATTGTGGGTCCACTTT+GGG - chr4_1:80612234-80612253 None:intergenic 45.0%
! TTCACGCATTTGAACGGGTT+TGG - chr4_1:80612409-80612428 None:intergenic 45.0%
CAAGGTCTAGGCATAGTAAC+CGG - chr4_1:80612453-80612472 None:intergenic 45.0%
! TTCTTCTTACTCGGTGGAAG+TGG - chr4_1:80612489-80612508 None:intergenic 45.0%
TTGAGCTTCTTCTTACTCGG+TGG - chr4_1:80612495-80612514 None:intergenic 45.0%
ACCGAGTAAGAAGAAGCTCA+AGG + chr4_1:80612494-80612513 Msa0576550:CDS 45.0%
TTAACACCCTTCTTATGCGG+CGG - chr4_1:80612543-80612562 None:intergenic 45.0%
TCTCTAGACCTCACATACCT+CGG - chr4_1:80612606-80612625 None:intergenic 45.0%
GTATGTGAGGTCTAGAGAAG+AGG + chr4_1:80612608-80612627 Msa0576550:CDS 45.0%
GAAGGAGGAGATTAACGAGT+TGG + chr4_1:80612650-80612669 Msa0576550:CDS 45.0%
GAGTTGGCGACTAGATTTCA+AGG - chr4_1:80612685-80612704 None:intergenic 45.0%
GGATAATGTGTGCCAGCAAT+TGG + chr4_1:80612956-80612975 Msa0576550:CDS 45.0%
TAATGTGTGCCAGCAATTGG+AGG + chr4_1:80612959-80612978 Msa0576550:CDS 45.0%
GGAAACAAACCTCCAATTGC+TGG - chr4_1:80612971-80612990 None:intergenic 45.0%
GTTACACGCTATGAGGGAAT+AGG - chr4_1:80612992-80613011 None:intergenic 45.0%
!! TGTGGGAATTTGGCTTTACG+AGG - chr4_1:80613420-80613439 None:intergenic 45.0%
GGCTCCATAATTCTGGTAGT+TGG + chr4_1:80613543-80613562 Msa0576550:intron 45.0%
TTTATAGCCTGCTATGGGCT+TGG + chr4_1:80613690-80613709 Msa0576550:intron 45.0%
TTATAGCCTGCTATGGGCTT+GGG + chr4_1:80613691-80613710 Msa0576550:intron 45.0%
! CGTAAATACCCCTGTTGCTT+GGG - chr4_1:80613733-80613752 None:intergenic 45.0%
ACGTAAATACCCCTGTTGCT+TGG - chr4_1:80613734-80613753 None:intergenic 45.0%
AAAATCCCTCCATAAGGACC+TGG - chr4_1:80613891-80613910 None:intergenic 45.0%
CCAATGGTGGTTCGTGATTA+AGG - chr4_1:80613989-80614008 None:intergenic 45.0%
CCTTAATCACGAACCACCAT+TGG + chr4_1:80613986-80614005 Msa0576550:intron 45.0%
TTGTCCCTCCCTAATGTCTT+TGG + chr4_1:80614158-80614177 Msa0576550:intron 45.0%
ATGTCTTTGGCTATTCCCTG+TGG + chr4_1:80614171-80614190 Msa0576550:intron 45.0%
ATTCCCTGTGGCATTTGACA+TGG + chr4_1:80614183-80614202 Msa0576550:intron 45.0%
ACACCATGTCAAATGCCACA+GGG - chr4_1:80614189-80614208 None:intergenic 45.0%
AACACCATGTCAAATGCCAC+AGG - chr4_1:80614190-80614209 None:intergenic 45.0%
!! GGAATGAGAGACTTGCTGTT+AGG - chr4_1:80614278-80614297 None:intergenic 45.0%
! CTCATTCCGTCACTGATTGT+AGG + chr4_1:80614290-80614309 Msa0576550:intron 45.0%
TTGTCAATTGTCCACCACCA+CGG + chr4_1:80614375-80614394 Msa0576550:intron 45.0%
TGTTCCATCATCAATACCCG+TGG - chr4_1:80614395-80614414 None:intergenic 45.0%
! GTGGTTTTCCAGGAAAAGAC+AGG + chr4_1:80614501-80614520 Msa0576550:intron 45.0%
! GTTTTCCAGGAAAAGACAGG+AGG + chr4_1:80614504-80614523 Msa0576550:intron 45.0%
ACAACATGAGAGGAAAACGC+GGG - chr4_1:80614599-80614618 None:intergenic 45.0%
CACAACATGAGAGGAAAACG+CGG - chr4_1:80614600-80614619 None:intergenic 45.0%
ACAGGTTTCCACAACATGAG+AGG - chr4_1:80614609-80614628 None:intergenic 45.0%
ATCAGCCTAGGATATACTGG+AGG - chr4_1:80614633-80614652 None:intergenic 45.0%
CTGATTCAGCAAGTTCCAGA+AGG + chr4_1:80614648-80614667 Msa0576550:CDS 45.0%
CTGAAATGCGTCAAAAGGGA+AGG + chr4_1:80614691-80614710 Msa0576550:CDS 45.0%
TTGACTCCCATATGCAAGCT+AGG + chr4_1:80614717-80614736 Msa0576550:CDS 45.0%
TTATGTGGAGAGGACGGAAT+TGG + chr4_1:80615191-80615210 Msa0576550:CDS 45.0%
CTCTACGAGATCTGGAAAAG+AGG - chr4_1:80615221-80615240 None:intergenic 45.0%
! CTCTTTTCCAGATCTCGTAG+AGG + chr4_1:80615219-80615238 Msa0576550:CDS 45.0%
TTGAAGTCCTCTACGAGATC+TGG - chr4_1:80615229-80615248 None:intergenic 45.0%
AGATCTCGTAGAGGACTTCA+AGG + chr4_1:80615228-80615247 Msa0576550:CDS 45.0%
! GTTGTCAGCATCAGCTTTAG+TGG - chr4_1:80615257-80615276 None:intergenic 45.0%
!! GACTTGGTGTTGAGACATCT+AGG - chr4_1:80615309-80615328 None:intergenic 45.0%
TTGTCCAGATGATGTGACTG+TGG + chr4_1:80615387-80615406 Msa0576550:CDS 45.0%
!! GATTGCTCGCTATTTTCGGT+GGG - chr4_1:80615427-80615446 None:intergenic 45.0%
!! AGATTGCTCGCTATTTTCGG+TGG - chr4_1:80615428-80615447 None:intergenic 45.0%
ACTGTTGCCACAGATTCCTT+TGG + chr4_1:80615502-80615521 Msa0576550:CDS 45.0%
GTGCCTACCATCATGTGAAA+TGG - chr4_1:80615566-80615585 None:intergenic 45.0%
! GCTATCACTGATAGCGTTTG+AGG - chr4_1:80615599-80615618 None:intergenic 45.0%
AACGCTATCAGTGATAGCCA+TGG + chr4_1:80615601-80615620 Msa0576550:CDS 45.0%
CAGTGATAGCCATGGAACTT+CGG + chr4_1:80615609-80615628 Msa0576550:CDS 45.0%
TTTAGCAACTCATCAGCGTG+AGG - chr4_1:80615739-80615758 None:intergenic 45.0%
GTTTCTCTTGTCTCCAGAGT+CGG - chr4_1:80616003-80616022 None:intergenic 45.0%
CGTTGCCACGAAAGGTAAAA+AGG + chr4_1:80616050-80616069 Msa0576550:CDS 45.0%
! CCTCTCCTTTTTACCTTTCG+TGG - chr4_1:80616058-80616077 None:intergenic 45.0%
CCACGAAAGGTAAAAAGGAG+AGG + chr4_1:80616055-80616074 Msa0576550:CDS 45.0%
CTAATGTTCCTTGCGGTACA+AGG - chr4_1:80616128-80616147 None:intergenic 45.0%
CTTGTACCGCAAGGAACATT+AGG + chr4_1:80616126-80616145 Msa0576550:CDS 45.0%
GCTACTAACATGATACTGGC+TGG + chr4_1:80616167-80616186 Msa0576550:exon 45.0%
TGAACATGACCTAACGCCAT+TGG - chr4_1:80616344-80616363 None:intergenic 45.0%
!!! GTTATTTTTTATTTTTTTTT+TGG + chr4_1:80615031-80615050 Msa0576550:intron 5.0%
TTTGAGCGATTCTTCGCCGA+CGG - chr4_1:80612042-80612061 None:intergenic 50.0%
AGTGGTGCTTCGCATTTCTC+AGG - chr4_1:80612101-80612120 None:intergenic 50.0%
! GTTTTTGTTGGGCTTTCCGG+TGG - chr4_1:80612202-80612221 None:intergenic 50.0%
! GGTCCACTTTGGGCTTTGAT+GGG - chr4_1:80612224-80612243 None:intergenic 50.0%
GTGTGATTGTGGGTCCACTT+TGG - chr4_1:80612235-80612254 None:intergenic 50.0%
!! TGAGTGCTGGGTGTGATTGT+GGG - chr4_1:80612245-80612264 None:intergenic 50.0%
!! TTGAGTGCTGGGTGTGATTG+TGG - chr4_1:80612246-80612265 None:intergenic 50.0%
GGTGTCTCCTACGTAATCGA+AGG + chr4_1:80612339-80612358 Msa0576550:CDS 50.0%
! TGGAGCACCTTCGATTACGT+AGG - chr4_1:80612349-80612368 None:intergenic 50.0%
AGGCGGTTCACGCATTTGAA+CGG - chr4_1:80612415-80612434 None:intergenic 50.0%
! GAACCGCCTTTTGTTCCGTT+TGG + chr4_1:80612426-80612445 Msa0576550:CDS 50.0%
GGTCCAAACGGAACAAAAGG+CGG - chr4_1:80612432-80612451 None:intergenic 50.0%
! GCCTTTTGTTCCGTTTGGAC+CGG + chr4_1:80612431-80612450 Msa0576550:CDS 50.0%
ACCGGTCCAAACGGAACAAA+AGG - chr4_1:80612435-80612454 None:intergenic 50.0%
GGCATAGTAACCGGTCCAAA+CGG - chr4_1:80612444-80612463 None:intergenic 50.0%
CGGTTACTATGCCTAGACCT+TGG + chr4_1:80612451-80612470 Msa0576550:CDS 50.0%
ACTATGCCTAGACCTTGGAC+CGG + chr4_1:80612456-80612475 Msa0576550:CDS 50.0%
! TTCTTACTCGGTGGAAGTGG+AGG - chr4_1:80612486-80612505 None:intergenic 50.0%
! GTTAAACCGGTTCAGTCTCC+CGG + chr4_1:80612558-80612577 Msa0576550:CDS 50.0%
CTCTAGACCTCACATACCTC+GGG - chr4_1:80612605-80612624 None:intergenic 50.0%
!! AGGTCTAGAGAAGAGGTGCT+GGG + chr4_1:80612615-80612634 Msa0576550:CDS 50.0%
!! ATGCTCATTGGAAGCGTCGA+AGG + chr4_1:80612892-80612911 Msa0576550:CDS 50.0%
!! TGCTCATTGGAAGCGTCGAA+GGG + chr4_1:80612893-80612912 Msa0576550:CDS 50.0%
! AGGAGTGTGTACGGTTGACA+TGG + chr4_1:80612935-80612954 Msa0576550:CDS 50.0%
TGGCTTAGTGTCTTGGCTAC+TGG + chr4_1:80613522-80613541 Msa0576550:intron 50.0%
!! GGCTACTGGCTCCATAATTC+TGG + chr4_1:80613536-80613555 Msa0576550:intron 50.0%
! TCTGAGACTGCTCTCAAGAG+AGG + chr4_1:80613665-80613684 Msa0576550:intron 50.0%
TTGCTTGGTTCCCAAGCAAC+AGG + chr4_1:80613720-80613739 Msa0576550:intron 50.0%
TGCTTGGTTCCCAAGCAACA+GGG + chr4_1:80613721-80613740 Msa0576550:intron 50.0%
!! CGTGACTTGTTAGATGTGCG+AGG - chr4_1:80613964-80613983 None:intergenic 50.0%
!! TGAGAGACTTGCTGTTAGGG+AGG - chr4_1:80614274-80614293 None:intergenic 50.0%
TGTCAATTGTCCACCACCAC+GGG + chr4_1:80614376-80614395 Msa0576550:intron 50.0%
ATCATCAATACCCGTGGTGG+TGG - chr4_1:80614389-80614408 None:intergenic 50.0%
!! ACCACCACGGGTATTGATGA+TGG + chr4_1:80614388-80614407 Msa0576550:intron 50.0%
TCCATCATCAATACCCGTGG+TGG - chr4_1:80614392-80614411 None:intergenic 50.0%
! CTTTCCCTCCTGTCTTTTCC+TGG - chr4_1:80614512-80614531 None:intergenic 50.0%
! CGCGTTTTCCTCTCATGTTG+TGG + chr4_1:80614598-80614617 Msa0576550:CDS 50.0%
! CTAGGATATACTGGAGGCAC+AGG - chr4_1:80614627-80614646 None:intergenic 50.0%
CTGTGCCTCCAGTATATCCT+AGG + chr4_1:80614625-80614644 Msa0576550:CDS 50.0%
!! GGAACTTGCTGAATCAGCCT+AGG - chr4_1:80614645-80614664 None:intergenic 50.0%
!! TCGCTATTTTCGGTGGGACA+GGG - chr4_1:80615421-80615440 None:intergenic 50.0%
TAGCGAGCAATCTATGTCGG+TGG + chr4_1:80615435-80615454 Msa0576550:CDS 50.0%
GGAATCTGTGGCAACAGTTG+TGG - chr4_1:80615500-80615519 None:intergenic 50.0%
TGGCTCACCAAAGGAATCTG+TGG - chr4_1:80615512-80615531 None:intergenic 50.0%
!! GCAAGATTCTGGCTCACCAA+AGG - chr4_1:80615521-80615540 None:intergenic 50.0%
!! CTGGTGTTGCTGCAAGATTC+TGG - chr4_1:80615532-80615551 None:intergenic 50.0%
TGAAATGGTCATACCTGGGC+TGG - chr4_1:80615551-80615570 None:intergenic 50.0%
GATGACAAAGGCTTCGGTGA+CGG + chr4_1:80615640-80615659 Msa0576550:CDS 50.0%
TGATGTCAGTCCGCTACCAA+GGG + chr4_1:80615774-80615793 Msa0576550:CDS 50.0%
! GCAGCTGCCCCTTTTATGAA+AGG + chr4_1:80615796-80615815 Msa0576550:CDS 50.0%
TTGGAGCAAGCTGTTGAGCA+AGG + chr4_1:80615832-80615851 Msa0576550:CDS 50.0%
AGGTGGAGCTGATTGTGCAA+AGG - chr4_1:80615920-80615939 None:intergenic 50.0%
TTTGCACAATCAGCTCCACC+TGG + chr4_1:80615919-80615938 Msa0576550:CDS 50.0%
! GGCACCTTTTGTGGTAACAG+TGG - chr4_1:80616028-80616047 None:intergenic 50.0%
TTTACCTTTCGTGGCAACGG+TGG - chr4_1:80616049-80616068 None:intergenic 50.0%
TCTAGGTTGCCAATGGCGTT+AGG + chr4_1:80616332-80616351 Msa0576550:three_prime_UTR 50.0%
! TGATTGGTCGGCATTGGAGG+CGG - chr4_1:80612169-80612188 None:intergenic 55.0%
! GGATGATTGGTCGGCATTGG+AGG - chr4_1:80612172-80612191 None:intergenic 55.0%
CCAATGCCGACCAATCATCC+CGG + chr4_1:80612172-80612191 Msa0576550:CDS 55.0%
! GGGTCCACTTTGGGCTTTGA+TGG - chr4_1:80612225-80612244 None:intergenic 55.0%
GGCGGTTCACGCATTTGAAC+GGG - chr4_1:80612414-80612433 None:intergenic 55.0%
TCTTCCACCGCCGCATAAGA+AGG + chr4_1:80612533-80612552 Msa0576550:CDS 55.0%
CTTCCACCGCCGCATAAGAA+GGG + chr4_1:80612534-80612553 Msa0576550:CDS 55.0%
AGTTCCGGGCAAAAACGGAC+CGG - chr4_1:80612580-80612599 None:intergenic 55.0%
!! GGGCTAGTTCCGGGCAAAAA+CGG - chr4_1:80612585-80612604 None:intergenic 55.0%
!! ACATACCTCGGGCTAGTTCC+GGG - chr4_1:80612594-80612613 None:intergenic 55.0%
!! CACATACCTCGGGCTAGTTC+CGG - chr4_1:80612595-80612614 None:intergenic 55.0%
GAACTAGCCCGAGGTATGTG+AGG + chr4_1:80612595-80612614 Msa0576550:CDS 55.0%
! GAGGTCTAGAGAAGAGGTGC+TGG + chr4_1:80612614-80612633 Msa0576550:CDS 55.0%
GCTGGGTGAACCATTGACGA+AGG + chr4_1:80612632-80612651 Msa0576550:CDS 55.0%
GGGTGAACCATTGACGAAGG+AGG + chr4_1:80612635-80612654 Msa0576550:CDS 55.0%
GCTTGGTTCCCAAGCAACAG+GGG + chr4_1:80613722-80613741 Msa0576550:intron 55.0%
! CAGAAAGCATATCCAGGCCC+AGG - chr4_1:80613819-80613838 None:intergenic 55.0%
AGTTGTCCTGGCCCTTCTAG+TGG + chr4_1:80613840-80613859 Msa0576550:CDS 55.0%
GTTGTCCTGGCCCTTCTAGT+GGG + chr4_1:80613841-80613860 Msa0576550:CDS 55.0%
ACAGCGGCTTCCTAGAAGAG+GGG - chr4_1:80614231-80614250 None:intergenic 55.0%
CACAGCGGCTTCCTAGAAGA+GGG - chr4_1:80614232-80614251 None:intergenic 55.0%
ACACAGCGGCTTCCTAGAAG+AGG - chr4_1:80614233-80614252 None:intergenic 55.0%
!! CTCGCTATTTTCGGTGGGAC+AGG - chr4_1:80615422-80615441 None:intergenic 55.0%
CTGATGTCAGTCCGCTACCA+AGG + chr4_1:80615773-80615792 Msa0576550:CDS 55.0%
ATAAAAGGGGCAGCTGCCCT+TGG - chr4_1:80615793-80615812 None:intergenic 55.0%
!! ACAACCGGTGTCACTGCCGT+CGG + chr4_1:80612023-80612042 Msa0576550:five_prime_UTR 60.0%
! TCGGCATTGGAGGCGGAGAT+GGG - chr4_1:80612162-80612181 None:intergenic 60.0%
! CCGGGATGATTGGTCGGCAT+TGG - chr4_1:80612175-80612194 None:intergenic 60.0%
ATGCCGACCAATCATCCCGG+CGG + chr4_1:80612175-80612194 Msa0576550:CDS 60.0%
TGCCTAGACCTTGGACCGGT+CGG + chr4_1:80612460-80612479 Msa0576550:CDS 60.0%
ACACCCTTCTTATGCGGCGG+TGG - chr4_1:80612540-80612559 None:intergenic 60.0%
AACGGACCGGGAGACTGAAC+CGG - chr4_1:80612567-80612586 None:intergenic 60.0%
!! TCTCCCGGTCCGTTTTTGCC+CGG + chr4_1:80612573-80612592 Msa0576550:CDS 60.0%
GTTCCGGGCAAAAACGGACC+GGG - chr4_1:80612579-80612598 None:intergenic 60.0%
! TTTTGCCCGGAACTAGCCCG+AGG + chr4_1:80612586-80612605 Msa0576550:CDS 60.0%
GGGGCCCCCTTAGTAAGTTG+TGG + chr4_1:80613502-80613521 Msa0576550:intron 60.0%
CCTGCTATGGGCTTGGGCTT+CGG + chr4_1:80613697-80613716 Msa0576550:intron 60.0%
TAAGTGAGGCGGCGCCCTTA+TGG + chr4_1:80613785-80613804 Msa0576550:CDS 60.0%
CCCAGGCGCGTCTTCCATAA+GGG - chr4_1:80613802-80613821 None:intergenic 60.0%
CCCTTATGGAAGACGCGCCT+GGG + chr4_1:80613799-80613818 Msa0576550:CDS 60.0%
GGCCAAGTCGCCCACTAGAA+GGG - chr4_1:80613854-80613873 None:intergenic 60.0%
GGCGTCCAGGTCCTTATGGA+GGG + chr4_1:80613883-80613902 Msa0576550:intron 60.0%
!! CTGCTGACTCCCCCTCTTCT+AGG + chr4_1:80614218-80614237 Msa0576550:intron 60.0%
CAGCGGCTTCCTAGAAGAGG+GGG - chr4_1:80614230-80614249 None:intergenic 60.0%
TCTTGCAGCAACACCAGCCC+AGG + chr4_1:80615535-80615554 Msa0576550:CDS 60.0%
CAAGCAAGGAGCTCCGACTC+TGG + chr4_1:80615987-80616006 Msa0576550:CDS 60.0%
! GGCAACGGTGGCACCTTTTG+TGG - chr4_1:80616037-80616056 None:intergenic 60.0%
TTCGCCGACGGCAGTGACAC+CGG - chr4_1:80612030-80612049 None:intergenic 65.0%
GGAGGCGGAGATGGGGAAAG+TGG - chr4_1:80612154-80612173 None:intergenic 65.0%
! CGGCATTGGAGGCGGAGATG+GGG - chr4_1:80612161-80612180 None:intergenic 65.0%
! GTCGGCATTGGAGGCGGAGA+TGG - chr4_1:80612163-80612182 None:intergenic 65.0%
CCGAAGCCCAAGCCCATAGC+AGG - chr4_1:80613700-80613719 None:intergenic 65.0%
GGGCTTGGGCTTCGGTTGCT+TGG + chr4_1:80613705-80613724 Msa0576550:intron 65.0%
GCCCTTATGGAAGACGCGCC+TGG + chr4_1:80613798-80613817 Msa0576550:CDS 65.0%
GCCCAGGCGCGTCTTCCATA+AGG - chr4_1:80613803-80613822 None:intergenic 65.0%
AGTCGCCCACTAGAAGGGCC+AGG - chr4_1:80613849-80613868 None:intergenic 65.0%
! GGCCCTTCTAGTGGGCGACT+TGG + chr4_1:80613849-80613868 Msa0576550:CDS 65.0%
GGGCCAAGTCGCCCACTAGA+AGG - chr4_1:80613855-80613874 None:intergenic 65.0%
! AGTGGGCGACTTGGCCCTTC+AGG + chr4_1:80613858-80613877 Msa0576550:CDS 65.0%
! GGCGACTTGGCCCTTCAGGA+GGG + chr4_1:80613862-80613881 Msa0576550:CDS 65.0%
GACCTGGACGCCCTCCTGAA+GGG - chr4_1:80613875-80613894 None:intergenic 65.0%
!! GGAGGGCGTCCAGGTCCTTA+TGG + chr4_1:80613879-80613898 Msa0576550:intron 65.0%
GGGCGTCCAGGTCCTTATGG+AGG + chr4_1:80613882-80613901 Msa0576550:intron 65.0%
! GGTGCCACCGTTGCCACGAA+AGG + chr4_1:80616042-80616061 Msa0576550:CDS 65.0%
GGGCCGCCGGGATGATTGGT+CGG - chr4_1:80612181-80612200 None:intergenic 70.0%
CAATCATCCCGGCGGCCCAC+CGG + chr4_1:80612183-80612202 Msa0576550:CDS 70.0%
GGCCGACCGGTCCAAGGTCT+AGG - chr4_1:80612465-80612484 None:intergenic 70.0%
AGTGGAGGCCGACCGGTCCA+AGG - chr4_1:80612471-80612490 None:intergenic 70.0%
CGGTGGAAGTGGAGGCCGAC+CGG - chr4_1:80612478-80612497 None:intergenic 70.0%
ATGGAAGACGCGCCTGGGCC+TGG + chr4_1:80613804-80613823 Msa0576550:CDS 70.0%
! GGGCGACTTGGCCCTTCAGG+AGG + chr4_1:80613861-80613880 Msa0576550:CDS 70.0%
GGACCTGGACGCCCTCCTGA+AGG - chr4_1:80613876-80613895 None:intergenic 70.0%
GGGGCAGCTGCCCTTGGTAG+CGG - chr4_1:80615787-80615806 None:intergenic 70.0%
CGGTGGGCCGCCGGGATGAT+TGG - chr4_1:80612185-80612204 None:intergenic 75.0%
TGGGCTTTCCGGTGGGCCGC+CGG - chr4_1:80612194-80612213 None:intergenic 75.0%
!! GGCCCTTCAGGAGGGCGTCC+AGG + chr4_1:80613870-80613889 Msa0576550:CDS 75.0%
! GGGCTTTCCGGTGGGCCGCC+GGG - chr4_1:80612193-80612212 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80611968 80616446 80611968 ID=Msa0576550;Name=Msa0576550
chr4_1 mRNA 80611968 80616446 80611968 ID=Msa0576550-mRNA-1;Parent=Msa0576550;Name=Msa0576550-mRNA-1;_AED=0.06;_eAED=0.06;_QI=164|0.6|0.83|0.83|1|1|6|267|748
chr4_1 exon 80611968 80612711 80611968 ID=Msa0576550-mRNA-1:exon:28867;Parent=Msa0576550-mRNA-1
chr4_1 exon 80612853 80612980 80612853 ID=Msa0576550-mRNA-1:exon:28868;Parent=Msa0576550-mRNA-1
chr4_1 exon 80613742 80613891 80613742 ID=Msa0576550-mRNA-1:exon:28869;Parent=Msa0576550-mRNA-1
chr4_1 exon 80614513 80614738 80614513 ID=Msa0576550-mRNA-1:exon:28870;Parent=Msa0576550-mRNA-1
chr4_1 exon 80614854 80614981 80614854 ID=Msa0576550-mRNA-1:exon:28871;Parent=Msa0576550-mRNA-1
chr4_1 exon 80615145 80616446 80615145 ID=Msa0576550-mRNA-1:exon:28872;Parent=Msa0576550-mRNA-1
chr4_1 five_prime_UTR 80611968 80612131 80611968 ID=Msa0576550-mRNA-1:five_prime_utr;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80612132 80612711 80612132 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80612853 80612980 80612853 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80613742 80613891 80613742 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80614513 80614738 80614513 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80614854 80614981 80614854 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 CDS 80615145 80616179 80615145 ID=Msa0576550-mRNA-1:cds;Parent=Msa0576550-mRNA-1
chr4_1 three_prime_UTR 80616180 80616446 80616180 ID=Msa0576550-mRNA-1:three_prime_utr;Parent=Msa0576550-mRNA-1
Gene Sequence

>Msa0576550

ATGGCTCTAAAACTCGCTACCACTTTCCCCATCTCCGCCTCCAATGCCGACCAATCATCCCGGCGGCCCACCGGAAAGCCCAACAAAAACCCATCAAAGCCCAAAGTGGACCCACAATCACACCCAGCACTCAAGTTTTCAAATATACCCAAACAGAAACTAAAACCAGTTAACAAAACCCCCGAAAATGTAAAAATCAGTGAAGACGGTGTCTCCTACGTAATCGAAGGTGCTCCATTCGAATTCAAATACAGTTACACCGAAACTCCTAAATCCAAACCCGTTCAAATGCGTGAACCGCCTTTTGTTCCGTTTGGACCGGTTACTATGCCTAGACCTTGGACCGGTCGGCCTCCACTTCCACCGAGTAAGAAGAAGCTCAAGGAGTTTGATTCTTTTGTTCTTCCACCGCCGCATAAGAAGGGTGTTAAACCGGTTCAGTCTCCCGGTCCGTTTTTGCCCGGAACTAGCCCGAGGTATGTGAGGTCTAGAGAAGAGGTGCTGGGTGAACCATTGACGAAGGAGGAGATTAACGAGTTGGTTCGAAGTACCTTGAAATCTAGTCGCCAACTCAATTTGGGTAGAGATGGTTTCATACATAACATGTTGGATAATATACATGCTCATTGGAAGCGTCGAAGGGTGTGTAAGATCAAGTGTATAGGAGTGTGTACGGTTGACATGGATAATGTGTGCCAGCAATTGGAGGGGTATTTACGTATTTTGGGTGTTTTTAGAGGATTCTGGAGAATAAGTGAGGCGGCGCCCTTATGGAAGACGCGCCTGGGCCTGGATATGCTTTCTGAAGTTGTCCTGGCCCTTCTAGTGGGCGACTTGGCCCTTCAGGAGGGCGTCCAGGAAAAGACAGGAGGGAAAGTCATTTACAGAAGAGGCGGTGTTATATACCTTTTCCGAGGAAGAAATTACAATTATAAAACACGCCCGCGTTTTCCTCTCATGTTGTGGAAACCTGTGCCTCCAGTATATCCTAGGCTGATTCAGCAAGTTCCAGAAGGTTTAACGTTAGAAGAAGCAACTGAAATGCGTCAAAAGGGAAGGACATTGACTCCCATATGCAAGCTAGGAAAAAATGGTGTTTATTATAACCTTGTAAACAATGTTAGAGAGGCATTTGAAGAGTGTGAACTAGTACGTGTAAACTGTCAAGGACTAAATAAAAGTGACTATCGAAAGATTGGAGCAAAACTAAGGGATCTTGTTCCGTGCACATTGCTTTCATACGAAAATGAGCATATACTTATGTGGAGAGGACGGAATTGGAAGTCCTCTTTTCCAGATCTCGTAGAGGACTTCAAGGAAGCCACTAAAGCTGATGCTGACAACAAAAATGACAAAACACTGCAGTCAGAAGCCCTAGATGTCTCAACACCAAGTCTACATCATAATCCCGTGGAGCATGTAAGCAATTTATCACATGACACTAGCATATCCTTTTGTCCAGATGATGTGACTGTGGATAAGGTTCCCTGTCCCACCGAAAATAGCGAGCAATCTATGTCGGTGGTTGCTGATGCTTCGCTTACAAAAGTCTACGAAGCTGAAACCACAACTGTTGCCACAGATTCCTTTGGTGAGCCAGAATCTTGCAGCAACACCAGCCCAGGTATGACCATTTCACATGATGGTAGGCACACTGAATGCCCCTCAAACGCTATCAGTGATAGCCATGGAACTTCGGATATAATGGATGACAAAGGCTTCGGTGACGGTCTTTCTACTTCAATTTCAGGATCAAATGCAATGCTAGGATCTAGAAACAGTAATATCTATGGCACAGTGGATCCTCACGCTGATGAGTTGCTAAATGATTCAGGAGCGGCTGATGTCAGTCCGCTACCAAGGGCAGCTGCCCCTTTTATGAAAGGAATTTCATTGCTATTGGAGCAAGCTGTTGAGCAAGGCAGTGCACTTGTTTTAGATAAAGATTCTTTGGATGCAGACAATGTTTATCGAACCACAGTTTCCTTTGCACAATCAGCTCCACCTGGACCTGTTTTTATGAAACATAGAAAGGTTGCGGTTCAAAAAAGTGACAAGCAAGGAGCTCCGACTCTGGAGACAAGAGAAACTACCACTGTTACCACAAAAGGTGCCACCGTTGCCACGAAAGGTAAAAAGGAGAGGAGTCCTAGAATTCGAAGAAAAGAAAATTTTGATGAGCGGTTTATGAACCTTGTACCGCAAGGAACATTAGGAGTTGATGAACTTGCTAAGCTACTAACATGA
Protein sequence

>Msa0576550

MALKLATTFPISASNADQSSRRPTGKPNKNPSKPKVDPQSHPALKFSNIPKQKLKPVNKTPENVKISEDGVSYVIEGAPFEFKYSYTETPKSKPVQMREPPFVPFGPVTMPRPWTGRPPLPPSKKKLKEFDSFVLPPPHKKGVKPVQSPGPFLPGTSPRYVRSREEVLGEPLTKEEINELVRSTLKSSRQLNLGRDGFIHNMLDNIHAHWKRRRVCKIKCIGVCTVDMDNVCQQLEGYLRILGVFRGFWRISEAAPLWKTRLGLDMLSEVVLALLVGDLALQEGVQEKTGGKVIYRRGGVIYLFRGRNYNYKTRPRFPLMLWKPVPPVYPRLIQQVPEGLTLEEATEMRQKGRTLTPICKLGKNGVYYNLVNNVREAFEECELVRVNCQGLNKSDYRKIGAKLRDLVPCTLLSYENEHILMWRGRNWKSSFPDLVEDFKEATKADADNKNDKTLQSEALDVSTPSLHHNPVEHVSNLSHDTSISFCPDDVTVDKVPCPTENSEQSMSVVADASLTKVYEAETTTVATDSFGEPESCSNTSPGMTISHDGRHTECPSNAISDSHGTSDIMDDKGFGDGLSTSISGSNAMLGSRNSNIYGTVDPHADELLNDSGAADVSPLPRAAAPFMKGISLLLEQAVEQGSALVLDKDSLDADNVYRTTVSFAQSAPPGPVFMKHRKVAVQKSDKQGAPTLETRETTTVTTKGATVATKGKKERSPRIRRKENFDERFMNLVPQGTLGVDELAKLLT*