Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625930 | XP_003604261.2 | 84.924 | 524 | 70 | 3 | 556 | 1079 | 86 | 600 | 0.0 | 932 |
| Msa0625930 | XP_003604261.2 | 85.149 | 606 | 37 | 4 | 1 | 564 | 1 | 595 | 0.0 | 1049 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625930 | sp|Q9SWH5|FUT1_ARATH | 47.257 | 474 | 236 | 5 | 97 | 564 | 93 | 558 | 5.91e-139 | 434 |
| Msa0625930 | sp|Q9SWH5|FUT1_ARATH | 47.468 | 474 | 235 | 5 | 607 | 1074 | 93 | 558 | 2.82e-138 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625930 | G7JEG8 | 84.924 | 524 | 70 | 3 | 556 | 1079 | 86 | 600 | 0.0 | 932 |
| Msa0625930 | G7JEG8 | 85.149 | 606 | 37 | 4 | 1 | 564 | 1 | 595 | 0.0 | 1049 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0078660 | Msa0625930 | 0.819129 | 1.365728e-52 | -8.615850e-47 |
| Msa0102750 | Msa0625930 | 0.805017 | 1.635356e-49 | -8.615850e-47 |
| Msa0610590 | Msa0625930 | 0.803659 | 3.136969e-49 | -8.615850e-47 |
| Msa0620790 | Msa0625930 | 0.837936 | 3.873331e-57 | -8.615850e-47 |
| Msa0625930 | Msa0647830 | 0.821773 | 3.377907e-53 | -8.615850e-47 |
| Msa0625930 | Msa0651190 | 0.814872 | 1.235073e-51 | -8.615850e-47 |
| Msa0625930 | Msa0658570 | 0.817907 | 2.585327e-52 | -8.615850e-47 |
| Msa0625930 | Msa0663710 | 0.944124 | 3.466274e-103 | -8.615850e-47 |
| Msa0625930 | Msa0678820 | 0.811768 | 5.935944e-51 | -8.615850e-47 |
| Msa0625930 | Msa0690440 | 0.823448 | 1.377434e-53 | -8.615850e-47 |
| Msa0625930 | Msa0693380 | 0.800594 | 1.339311e-48 | -8.615850e-47 |
| Msa0625930 | Msa0828540 | 0.813452 | 2.540975e-51 | -8.615850e-47 |
| Msa0625930 | Msa0893810 | 0.815534 | 8.798868e-52 | -8.615850e-47 |
| Msa0625930 | Msa1068200 | -0.826565 | 2.529794e-54 | -8.615850e-47 |
| Msa0625930 | Msa1075220 | -0.812268 | 4.618361e-51 | -8.615850e-47 |
| Msa0625930 | Msa1082500 | 0.813853 | 2.073784e-51 | -8.615850e-47 |
| Msa0625930 | Msa1090260 | 0.801431 | 9.034403e-49 | -8.615850e-47 |
| Msa0625930 | Msa1139000 | -0.806427 | 8.271389e-50 | -8.615850e-47 |
| Msa0625930 | Msa1156340 | -0.807114 | 5.919034e-50 | -8.615850e-47 |
| Msa0625930 | Msa1162550 | -0.820004 | 8.623443e-53 | -8.615850e-47 |
| Msa0625930 | Msa1185540 | 0.802679 | 5.003049e-49 | -8.615850e-47 |
| Msa0625930 | Msa1229600 | 0.835773 | 1.380431e-56 | -8.615850e-47 |
| Msa0625930 | Msa1233500 | 0.807994 | 3.851471e-50 | -8.615850e-47 |
| Msa0625930 | Msa1239530 | 0.826073 | 3.313787e-54 | -8.615850e-47 |
| Msa0625930 | Msa1271300 | 0.801239 | 9.887774e-49 | -8.615850e-47 |
| Msa0625930 | Msa1283860 | 0.804124 | 2.510579e-49 | -8.615850e-47 |
| Msa0625930 | Msa1297090 | 0.805628 | 1.217594e-49 | -8.615850e-47 |
| Msa0625930 | Msa1310210 | 0.829175 | 5.963787e-55 | -8.615850e-47 |
| Msa0625930 | Msa1322890 | 0.816934 | 4.281920e-52 | -8.615850e-47 |
| Msa0625930 | Msa1357530 | 0.801675 | 8.051316e-49 | -8.615850e-47 |
| Msa0625930 | Msa1376890 | 0.807111 | 5.929959e-50 | -8.615850e-47 |
| Msa0625930 | Msa1384350 | 0.810058 | 1.391702e-50 | -8.615850e-47 |
| Msa0625930 | Msa1393410 | 0.841244 | 5.344195e-58 | -8.615850e-47 |
| Msa0625930 | Msa1435420 | 0.841626 | 4.240057e-58 | -8.615850e-47 |
| Msa0625930 | Msa1451620 | -0.809306 | 2.019752e-50 | -8.615850e-47 |
| Msa0625930 | Msa1466810 | 0.803192 | 3.919692e-49 | -8.615850e-47 |
| Msa0195770 | Msa0625930 | 0.807674 | 4.504695e-50 | -8.615850e-47 |
| Msa0217400 | Msa0625930 | 0.848146 | 7.380331e-60 | -8.615850e-47 |
| Msa0234430 | Msa0625930 | 0.803134 | 4.028928e-49 | -8.615850e-47 |
| Msa0376590 | Msa0625930 | 0.805264 | 1.452066e-49 | -8.615850e-47 |
| Msa0388960 | Msa0625930 | 0.810400 | 1.174779e-50 | -8.615850e-47 |
| Msa0466390 | Msa0625930 | 0.804864 | 1.760509e-49 | -8.615850e-47 |
| Msa0242480 | Msa0625930 | 0.806809 | 6.869543e-50 | -8.615850e-47 |
| Msa0257250 | Msa0625930 | 0.805413 | 1.350965e-49 | -8.615850e-47 |
| Msa0258760 | Msa0625930 | 0.807862 | 4.109074e-50 | -8.615850e-47 |
| Msa0266000 | Msa0625930 | -0.808459 | 3.064965e-50 | -8.615850e-47 |
| Msa0296560 | Msa0625930 | 0.809937 | 1.478049e-50 | -8.615850e-47 |
| Msa0313990 | Msa0625930 | 0.821489 | 3.929035e-53 | -8.615850e-47 |
| Msa0331920 | Msa0625930 | 0.814739 | 1.321375e-51 | -8.615850e-47 |
| Msa0335040 | Msa0625930 | 0.830096 | 3.559637e-55 | -8.615850e-47 |
| Msa0498220 | Msa0625930 | 0.806529 | 7.871110e-50 | -8.615850e-47 |
| Msa0516370 | Msa0625930 | 0.801575 | 8.438604e-49 | -8.615850e-47 |
| Msa0535950 | Msa0625930 | 0.807218 | 5.627496e-50 | -8.615850e-47 |
| Msa0543900 | Msa0625930 | 0.805850 | 1.093964e-49 | -8.615850e-47 |
| Msa0553460 | Msa0625930 | 0.822184 | 2.712648e-53 | -8.615850e-47 |
| Msa0567020 | Msa0625930 | 0.804678 | 1.925216e-49 | -8.615850e-47 |
| Msa0570640 | Msa0625930 | 0.816322 | 5.872057e-52 | -8.615850e-47 |
| Msa0578970 | Msa0625930 | 0.805076 | 1.589337e-49 | -8.615850e-47 |
| Msa0585700 | Msa0625930 | 0.941652 | 2.864141e-101 | -8.615850e-47 |
| Msa0599770 | Msa0625930 | 0.813613 | 2.342132e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625930 | MtrunA17_Chr4g0001511 | 85.149 | 606 | 37 | 4 | 1 | 564 | 113 | 707 | 0.0 | 1048 |
| Msa0625930 | MtrunA17_Chr4g0001511 | 84.924 | 524 | 70 | 3 | 556 | 1079 | 198 | 712 | 0.0 | 932 |
| Msa0625930 | MtrunA17_Chr2g0286741 | 59.862 | 578 | 202 | 8 | 14 | 566 | 4 | 576 | 0.0 | 678 |
| Msa0625930 | MtrunA17_Chr2g0286741 | 61.822 | 516 | 184 | 7 | 566 | 1075 | 67 | 575 | 0.0 | 644 |
| Msa0625930 | MtrunA17_Chr1g0196981 | 57.113 | 485 | 201 | 3 | 82 | 564 | 5 | 484 | 0.0 | 565 |
| Msa0625930 | MtrunA17_Chr1g0196981 | 55.734 | 497 | 205 | 4 | 583 | 1077 | 4 | 487 | 0.0 | 560 |
| Msa0625930 | MtrunA17_Chr8g0388711 | 49.372 | 557 | 269 | 7 | 12 | 566 | 38 | 583 | 0.0 | 541 |
| Msa0625930 | MtrunA17_Chr8g0388711 | 52.621 | 477 | 218 | 5 | 601 | 1075 | 112 | 582 | 1.79e-171 | 516 |
| Msa0625930 | MtrunA17_Chr4g0060941 | 43.737 | 471 | 257 | 4 | 609 | 1076 | 111 | 576 | 1.84e-129 | 406 |
| Msa0625930 | MtrunA17_Chr4g0060941 | 39.123 | 570 | 311 | 9 | 4 | 564 | 32 | 574 | 1.01e-126 | 399 |
| Msa0625930 | MtrunA17_Chr3g0091781 | 43.249 | 474 | 252 | 6 | 609 | 1076 | 73 | 535 | 8.49e-127 | 398 |
| Msa0625930 | MtrunA17_Chr3g0091781 | 41.748 | 515 | 271 | 10 | 65 | 568 | 41 | 537 | 2.13e-125 | 394 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625930 | AT2G03220.1 | 47.257 | 474 | 236 | 5 | 97 | 564 | 93 | 558 | 6.00e-140 | 434 |
| Msa0625930 | AT2G03220.1 | 47.468 | 474 | 235 | 5 | 607 | 1074 | 93 | 558 | 2.87e-139 | 432 |
| Msa0625930 | AT2G15370.1 | 43.579 | 475 | 252 | 6 | 99 | 563 | 61 | 529 | 3.56e-132 | 412 |
| Msa0625930 | AT2G15370.1 | 40.977 | 471 | 263 | 5 | 609 | 1070 | 61 | 525 | 2.60e-121 | 384 |
| Msa0625930 | AT2G03210.3 | 43.461 | 497 | 266 | 6 | 590 | 1076 | 78 | 569 | 4.04e-132 | 414 |
| Msa0625930 | AT2G03210.3 | 40.107 | 561 | 300 | 9 | 14 | 564 | 33 | 567 | 3.28e-129 | 406 |
| Msa0625930 | AT2G03210.1 | 43.200 | 500 | 266 | 6 | 590 | 1076 | 44 | 538 | 5.25e-132 | 412 |
| Msa0625930 | AT2G03210.1 | 40.285 | 561 | 296 | 9 | 17 | 564 | 2 | 536 | 4.97e-129 | 404 |
| Msa0625930 | AT2G03210.2 | 43.200 | 500 | 266 | 6 | 590 | 1076 | 78 | 572 | 1.08e-131 | 412 |
| Msa0625930 | AT2G03210.2 | 40.071 | 564 | 299 | 9 | 14 | 564 | 33 | 570 | 9.46e-129 | 405 |
| Msa0625930 | AT1G14100.1 | 43.724 | 478 | 250 | 8 | 98 | 564 | 44 | 513 | 1.45e-130 | 407 |
| Msa0625930 | AT1G14100.1 | 42.050 | 478 | 258 | 8 | 608 | 1074 | 44 | 513 | 4.28e-120 | 380 |
| Msa0625930 | AT2G15350.1 | 42.647 | 476 | 255 | 6 | 99 | 563 | 42 | 510 | 9.72e-130 | 405 |
| Msa0625930 | AT2G15350.1 | 40.710 | 479 | 266 | 7 | 609 | 1076 | 42 | 513 | 6.51e-122 | 385 |
| Msa0625930 | AT2G15390.2 | 41.935 | 496 | 269 | 8 | 78 | 563 | 45 | 531 | 2.14e-129 | 405 |
| Msa0625930 | AT2G15390.2 | 39.600 | 500 | 283 | 8 | 588 | 1077 | 45 | 535 | 7.38e-120 | 380 |
| Msa0625930 | AT1G14080.1 | 43.284 | 469 | 250 | 6 | 98 | 556 | 63 | 525 | 2.64e-129 | 405 |
| Msa0625930 | AT1G14080.1 | 41.328 | 467 | 260 | 5 | 609 | 1066 | 64 | 525 | 3.16e-120 | 381 |
| Msa0625930 | AT2G15390.1 | 42.857 | 476 | 256 | 7 | 98 | 563 | 30 | 499 | 2.72e-129 | 404 |
| Msa0625930 | AT2G15390.1 | 40.501 | 479 | 269 | 7 | 609 | 1077 | 31 | 503 | 8.13e-120 | 379 |
| Msa0625930 | AT1G14110.1 | 41.102 | 472 | 223 | 7 | 99 | 564 | 46 | 468 | 5.12e-116 | 367 |
| Msa0625930 | AT1G14110.1 | 39.746 | 473 | 228 | 8 | 609 | 1074 | 46 | 468 | 1.02e-107 | 345 |
| Msa0625930 | AT1G74420.1 | 39.400 | 467 | 262 | 9 | 588 | 1046 | 66 | 519 | 1.64e-100 | 328 |
| Msa0625930 | AT1G74420.1 | 39.615 | 467 | 261 | 8 | 78 | 536 | 66 | 519 | 5.80e-100 | 326 |
| Msa0625930 | AT1G74420.2 | 40.878 | 433 | 241 | 6 | 616 | 1046 | 104 | 523 | 7.37e-100 | 326 |
| Msa0625930 | AT1G74420.2 | 40.440 | 455 | 250 | 7 | 90 | 536 | 82 | 523 | 8.34e-100 | 326 |
| Msa0625930 | AT1G74420.4 | 39.400 | 467 | 262 | 9 | 588 | 1046 | 104 | 557 | 1.13e-99 | 327 |
| Msa0625930 | AT1G74420.4 | 39.615 | 467 | 261 | 8 | 78 | 536 | 104 | 557 | 3.38e-99 | 325 |
| Msa0625930 | AT1G74420.3 | 40.659 | 455 | 249 | 8 | 90 | 536 | 120 | 561 | 4.55e-99 | 325 |
| Msa0625930 | AT1G74420.3 | 41.109 | 433 | 240 | 7 | 616 | 1046 | 142 | 561 | 4.74e-99 | 325 |
Find 157 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGTGCAAATACCTTATT+TGG | 0.170999 | 4_3:-5284763 | Msa0625930:CDS |
| ACTACTTCTTTGTCTACTTT+TGG | 0.201160 | 4_3:-5288261 | Msa0625930:CDS |
| TATAAATTCTAAGAACATTA+AGG | 0.211892 | 4_3:-5289219 | Msa0625930:CDS |
| TGGACACCGGCTAATGGTTT+AGG | 0.237994 | 4_3:-5284743 | Msa0625930:CDS |
| TTTAAATTATCACCGTATTC+TGG | 0.239005 | 4_3:+5288435 | None:intergenic |
| ACGAATAAATCAACTTCTTC+AGG | 0.252310 | 4_3:-5288402 | Msa0625930:CDS |
| TTCACATTCTAGGAGCATTA+AGG | 0.257393 | 4_3:-5284795 | Msa0625930:CDS |
| TTGCAGCCATGCTAACAATT+TGG | 0.262073 | 4_3:+5284717 | None:intergenic |
| AGCTAACAATAATTCAAAAT+TGG | 0.265569 | 4_3:-5284522 | Msa0625930:CDS |
| AGCTAACAATAATTCAAAAT+TGG | 0.265569 | 4_3:-5288946 | Msa0625930:CDS |
| GCTAAAGCAGATGAGAAAAT+AGG | 0.280030 | 4_3:-5284215 | Msa0625930:CDS |
| CTAGATTCATAATCACTTCT+TGG | 0.285028 | 4_3:+5284156 | None:intergenic |
| CAAAGTGCAAATACCTTATC+TGG | 0.292189 | 4_3:-5289187 | Msa0625930:CDS |
| TAGTCAAGCTCTTATCATTA+AGG | 0.302015 | 4_3:-5284426 | Msa0625930:CDS |
| TTGTGGTAATCTTTACCATT+AGG | 0.304737 | 4_3:+5284833 | None:intergenic |
| CATTAGCCGGTGTCCAAATA+AGG | 0.310870 | 4_3:+5284750 | None:intergenic |
| GCTAAAGCAGATGAGAAAAT+AGG | 0.324523 | 4_3:-5288639 | Msa0625930:CDS |
| GGACACCGGCTAATGGTTTA+GGG | 0.327747 | 4_3:-5284742 | Msa0625930:CDS |
| TTGTGGTAATCCTTACCATT+AGG | 0.335624 | 4_3:+5289257 | None:intergenic |
| TAGATTCATAATCACTTCTT+GGG | 0.337756 | 4_3:+5284157 | None:intergenic |
| TCACATTCTAGGAGCATTAA+GGG | 0.360235 | 4_3:-5284794 | Msa0625930:CDS |
| TCTTTCATACCAAGTACTTT+TGG | 0.362190 | 4_3:+5288525 | None:intergenic |
| GTGTTATGCTCGTAAGATTC+AGG | 0.364270 | 4_3:-5289091 | Msa0625930:CDS |
| TGGACACCGGCTAATGGTTT+AGG | 0.366798 | 4_3:-5289167 | Msa0625930:CDS |
| ATAAATTCTAAGAACATTAA+GGG | 0.369064 | 4_3:-5289218 | Msa0625930:CDS |
| TCCTATCCTTAGTGACTTGA+AGG | 0.372010 | 4_3:+5290425 | None:intergenic |
| CTTCTTCTTTCATTTATATG+AGG | 0.374984 | 4_3:-5283653 | Msa0625930:CDS |
| GAATATGTTGCTCAAGGCTT+GGG | 0.375897 | 4_3:-5283816 | Msa0625930:CDS |
| ATGAATAAATCAACTGTTAC+CGG | 0.383122 | 4_3:-5283978 | Msa0625930:CDS |
| CACAAGCTTCTCTCTCTTTG+AGG | 0.384231 | 4_3:-5290311 | Msa0625930:CDS |
| GGATATGTTGCTCAAGGCTT+GGG | 0.386546 | 4_3:-5288240 | Msa0625930:CDS |
| CTTATCTGGACACCGGCTAA+TGG | 0.389537 | 4_3:-5289173 | Msa0625930:CDS |
| CTTATTTGGACACCGGCTAA+TGG | 0.391000 | 4_3:-5284749 | Msa0625930:CDS |
| CATTTATATGAGGAAATGTA+AGG | 0.395725 | 4_3:-5283643 | Msa0625930:CDS |
| CATAGAAAGTGCGGACCTAA+TGG | 0.405306 | 4_3:-5284848 | Msa0625930:CDS |
| TACAAACCTGTTGTTGTAGC+TGG | 0.406944 | 4_3:+5289624 | None:intergenic |
| TTCAATATTAAATACGAAGA+AGG | 0.409361 | 4_3:+5284893 | None:intergenic |
| TTGCAGCCATGCTAACCATT+TGG | 0.409888 | 4_3:+5289141 | None:intergenic |
| GTGTGATGCTTGTAAGATTC+GGG | 0.410123 | 4_3:-5284667 | Msa0625930:CDS |
| CATTTACACGAGGAAATGTA+AGG | 0.422529 | 4_3:-5288067 | Msa0625930:CDS |
| GATTGAACACTCTTATTTGA+AGG | 0.425603 | 4_3:+5288616 | None:intergenic |
| CTCAAGGCTTGGGAAATTTG+AGG | 0.429093 | 4_3:-5283806 | Msa0625930:CDS |
| CTCAAGGCTTGGGAAATTTG+AGG | 0.429093 | 4_3:-5288230 | Msa0625930:CDS |
| TTCGATATTAAATATGAAGA+AGG | 0.430936 | 4_3:+5289317 | None:intergenic |
| AAAGAATGTTGTAAATCTCT+TGG | 0.434299 | 4_3:+5290390 | None:intergenic |
| GAAAGACCAGCTACAACAAC+AGG | 0.435452 | 4_3:-5289630 | Msa0625930:intron |
| TGGATATGTTGCTCAAGGCT+TGG | 0.436642 | 4_3:-5288241 | Msa0625930:CDS |
| CATAGAAGGTGTGGACCTAA+TGG | 0.437830 | 4_3:-5289272 | Msa0625930:CDS |
| TGAATATGTTGCTCAAGGCT+TGG | 0.438642 | 4_3:-5283817 | Msa0625930:CDS |
| CGTGTGATGCTTGTAAGATT+CGG | 0.439098 | 4_3:-5284668 | Msa0625930:CDS |
| CTCTTTGAGGACTTTACAAA+AGG | 0.445621 | 4_3:-5290298 | Msa0625930:CDS |
| CGAATAAATCAACTTCTTCA+GGG | 0.450484 | 4_3:-5288401 | Msa0625930:CDS |
| GCTTCTTGTGGAGTTAAAGT+AGG | 0.453450 | 4_3:+5288594 | None:intergenic |
| TGGTAGTAACTTATTGTGAA+TGG | 0.456552 | 4_3:+5288545 | None:intergenic |
| ATATAAATAGTATGTTTCAT+AGG | 0.457790 | 4_3:-5283590 | Msa0625930:CDS |
| ATGTAGAGTTGGATCATTTG+TGG | 0.462453 | 4_3:+5285036 | None:intergenic |
| ATGTAGAGTTGGATCATTTG+TGG | 0.462453 | 4_3:+5289460 | None:intergenic |
| GCGTCTTTATATCCAGAATA+CGG | 0.468536 | 4_3:-5288447 | Msa0625930:CDS |
| AAATATGAAGAAGGTTTATG+AGG | 0.471182 | 4_3:+5289326 | None:intergenic |
| GCTTGGGAAATTTGAGGCCA+TGG | 0.471407 | 4_3:-5283800 | Msa0625930:CDS |
| GCTTGGGAAATTTGAGGCCA+TGG | 0.471407 | 4_3:-5288224 | Msa0625930:CDS |
| AGACCAACAGCTACAACAAC+AGG | 0.472780 | 4_3:-5285212 | Msa0625930:intron |
| TTTCCACTACAATAATGCTT+AGG | 0.473683 | 4_3:+5283693 | None:intergenic |
| CTTCATTCGAAGGGTGGAAA+AGG | 0.474520 | 4_3:+5284276 | None:intergenic |
| TTTAAATTCTCACCGTATTG+TGG | 0.477617 | 4_3:+5284011 | None:intergenic |
| TAAGCATAATATGAAAGCTT+GGG | 0.479892 | 4_3:-5288322 | Msa0625930:CDS |
| TGGTAGTAAATTATTGTGAA+TGG | 0.479933 | 4_3:+5284121 | None:intergenic |
| CTTCATTCGAAGGGTGGAAA+AGG | 0.480370 | 4_3:+5288700 | None:intergenic |
| AAACCTGTTGTTGTAGCTGT+TGG | 0.485669 | 4_3:+5285209 | None:intergenic |
| CATTAGCCGGTGTCCAGATA+AGG | 0.489679 | 4_3:+5289174 | None:intergenic |
| CCACTACAATAATGCTTAGG+AGG | 0.497872 | 4_3:+5283696 | None:intergenic |
| ATGATACATCATGCATAAGC+AGG | 0.499784 | 4_3:-5284955 | Msa0625930:CDS |
| CTTGTCAAATTCAAGGTACA+GGG | 0.500668 | 4_3:-5285269 | Msa0625930:intron |
| TTTCCACTACAGTAATGCTT+AGG | 0.503251 | 4_3:+5288117 | None:intergenic |
| ACTAAGTTTATCTGATGTGT+TGG | 0.503513 | 4_3:-5288286 | Msa0625930:CDS |
| CCACTACAGTAATGCTTAGG+AGG | 0.503948 | 4_3:+5288120 | None:intergenic |
| GATTGAACACTCTTACTTGA+AGG | 0.504657 | 4_3:+5284192 | None:intergenic |
| AAGTTAACAATGATTACAAC+AGG | 0.504914 | 4_3:+5290346 | None:intergenic |
| TGGATTGGAGTATGTAGAGT+TGG | 0.505395 | 4_3:+5285025 | None:intergenic |
| TGTTACCGGGGAAATTATAG+AGG | 0.507112 | 4_3:-5283964 | Msa0625930:CDS |
| TAATGGTTTAGGAAACCAAA+TGG | 0.508879 | 4_3:-5289156 | Msa0625930:CDS |
| ACCAAGTTTATCTGATGTGT+TGG | 0.513511 | 4_3:-5283862 | Msa0625930:CDS |
| CAAGTCACTAAGGATAGGAT+AGG | 0.517734 | 4_3:-5290421 | Msa0625930:CDS |
| AGATTCATAATTGCTTCTTG+TGG | 0.518248 | 4_3:+5288582 | None:intergenic |
| ATAAGCATAATATGAAAGCT+TGG | 0.522629 | 4_3:-5288323 | Msa0625930:CDS |
| ACTTCTTGGGGAGTTGAAAG+AGG | 0.524904 | 4_3:+5284170 | None:intergenic |
| ATTAGCTTGTATAGAAGCCA+TGG | 0.525397 | 4_3:+5283783 | None:intergenic |
| ATGATGCCTCATGCATAAGC+AGG | 0.525420 | 4_3:-5289379 | Msa0625930:CDS |
| TGGTTTCCTAAACCATTAGC+CGG | 0.528205 | 4_3:+5289161 | None:intergenic |
| TGGTTCCCTAAACCATTAGC+CGG | 0.530224 | 4_3:+5284737 | None:intergenic |
| AGGGAACCAAATTGTTAGCA+TGG | 0.531204 | 4_3:-5284723 | Msa0625930:CDS |
| ACATCTTTACATCCACAATA+CGG | 0.531771 | 4_3:-5284023 | Msa0625930:CDS |
| AAATTTCTATCAAGCACACT+TGG | 0.531776 | 4_3:-5288661 | Msa0625930:CDS |
| AATTTACTACCAAAAGTACT+TGG | 0.532510 | 4_3:-5284110 | Msa0625930:CDS |
| AGTCTCCACGCTTCATTCGA+AGG | 0.532757 | 4_3:+5288690 | None:intergenic |
| GAGAACTCTCTTTCACAAGC+TGG | 0.535540 | 4_3:+5283741 | None:intergenic |
| GAGAACTCTCTTTCACAAGC+TGG | 0.535540 | 4_3:+5288165 | None:intergenic |
| ATTATCTTGTATAGAAGCCA+TGG | 0.536564 | 4_3:+5288207 | None:intergenic |
| AGTCTCCATGCTTCATTCGA+AGG | 0.537400 | 4_3:+5284266 | None:intergenic |
| ATTTCTCAGGTAAATTTGGT+CGG | 0.541767 | 4_3:+5288889 | None:intergenic |
| GGAAATCCTTCAAGTCACTA+AGG | 0.543070 | 4_3:-5290431 | Msa0625930:CDS |
| TCCACCCTTCGAATGAAGCA+TGG | 0.547667 | 4_3:-5284271 | Msa0625930:CDS |
| TCCATGCTTCATTCGAAGGG+TGG | 0.548557 | 4_3:+5284270 | None:intergenic |
| CCTCCTAAGCATTATTGTAG+TGG | 0.552348 | 4_3:-5283696 | Msa0625930:CDS |
| ATGAACCTCTATAATTTCCC+CGG | 0.553101 | 4_3:+5283959 | None:intergenic |
| GTTTATGAGATGAAGCTTTG+CGG | 0.553212 | 4_3:+5284915 | None:intergenic |
| GTCTCCATGCTTCATTCGAA+GGG | 0.553860 | 4_3:+5284267 | None:intergenic |
| GTCTCCACGCTTCATTCGAA+GGG | 0.553860 | 4_3:+5288691 | None:intergenic |
| CCTCCTAAGCATTACTGTAG+TGG | 0.554289 | 4_3:-5288120 | Msa0625930:CDS |
| TGGATCGGAGTATGTAGAGT+TGG | 0.556752 | 4_3:+5289449 | None:intergenic |
| AGGAAACCAAATGGTTAGCA+TGG | 0.559741 | 4_3:-5289147 | Msa0625930:CDS |
| TGAATAAATCAACTGTTACC+GGG | 0.562441 | 4_3:-5283977 | Msa0625930:CDS |
| CGAGCATAACACGGTTTGTG+AGG | 0.563260 | 4_3:+5289102 | None:intergenic |
| CAAGCATCACACGGTTTGTG+AGG | 0.572770 | 4_3:+5284678 | None:intergenic |
| TGAGGACTTTACAAAAGGCA+AGG | 0.572789 | 4_3:-5290293 | Msa0625930:intron |
| ATATCAAAGTTTGATAGAGA+AGG | 0.577197 | 4_3:-5284549 | Msa0625930:CDS |
| ATATCAAAGTTTGATAGAGA+AGG | 0.577197 | 4_3:-5288973 | Msa0625930:CDS |
| ACCAACACATCAGATAAACT+TGG | 0.577416 | 4_3:+5283861 | None:intergenic |
| CAAATACCTTATTTGGACAC+CGG | 0.583111 | 4_3:-5284756 | Msa0625930:CDS |
| AAGTCACTAAGGATAGGATA+GGG | 0.584518 | 4_3:-5290420 | Msa0625930:CDS |
| ATAAGCATAATATGAAAGCA+TGG | 0.589938 | 4_3:-5283899 | Msa0625930:CDS |
| GAATAAATCAACTGTTACCG+GGG | 0.593150 | 4_3:-5283976 | Msa0625930:CDS |
| TCCACGCTTCATTCGAAGGG+TGG | 0.594457 | 4_3:+5288694 | None:intergenic |
| AAAGGTGTCATGAAAAGAGA+AGG | 0.597269 | 4_3:+5284365 | None:intergenic |
| AAAGGTGTCATGAAAAGAGA+AGG | 0.597269 | 4_3:+5288789 | None:intergenic |
| AAGGTGTGGACCTAATGGTA+AGG | 0.597661 | 4_3:-5289267 | Msa0625930:CDS |
| ATAGAAGTTTATCAAGCAAG+TGG | 0.597808 | 4_3:-5288372 | Msa0625930:CDS |
| AATGCTACTACAACAACTGA+AGG | 0.600621 | 4_3:-5285236 | Msa0625930:CDS |
| TCTGATTGCAAAATTAACAA+AGG | 0.600847 | 4_3:+5288825 | None:intergenic |
| ATCACTAACCAGCTTTACAC+CGG | 0.600952 | 4_3:+5288035 | None:intergenic |
| GAAGAAATTCATAGAAAGTG+CGG | 0.601314 | 4_3:-5284857 | Msa0625930:CDS |
| CTTCTTCTTTCATTTACACG+AGG | 0.604312 | 4_3:-5288077 | Msa0625930:CDS |
| TACTACCAAAAGTACTTGGT+AGG | 0.604644 | 4_3:-5284106 | Msa0625930:CDS |
| ATTTCTCAGGTAAATGCGGT+CGG | 0.605183 | 4_3:+5284465 | None:intergenic |
| TCTGATTGCAAAATTAACAA+AGG | 0.607879 | 4_3:+5284401 | None:intergenic |
| AGATTCATAATCACTTCTTG+GGG | 0.608639 | 4_3:+5284158 | None:intergenic |
| CGAATCTTACAAGCATCACA+CGG | 0.610389 | 4_3:+5284669 | None:intergenic |
| CTGTAACCTGCTTATGCATG+AGG | 0.612021 | 4_3:+5289373 | None:intergenic |
| AAGTTACTACCAAAAGTACT+TGG | 0.622114 | 4_3:-5288534 | Msa0625930:CDS |
| TGTCAAATTCAAGGTGCAGG+AGG | 0.625916 | 4_3:-5289682 | Msa0625930:intron |
| TCCTTCAAGTCACTAAGGAT+AGG | 0.627501 | 4_3:-5290426 | Msa0625930:CDS |
| TTAGGAGGAGCATGATAACA+TGG | 0.627761 | 4_3:+5288135 | None:intergenic |
| TCCACCCTTCGAATGAAGCG+TGG | 0.629725 | 4_3:-5288695 | Msa0625930:CDS |
| TTAGGAGGAGCATGATAACA+AGG | 0.634688 | 4_3:+5283711 | None:intergenic |
| AGATTGAGAAATAATGATGA+TGG | 0.636757 | 4_3:+5284494 | None:intergenic |
| AGATTGAGAAATAATGATGA+TGG | 0.636757 | 4_3:+5288918 | None:intergenic |
| AATTCACTGTCTACTTCTGG+CGG | 0.638201 | 4_3:-5284080 | Msa0625930:CDS |
| TTGTGAAAGAGAGTTCTCAA+TGG | 0.648650 | 4_3:-5283736 | Msa0625930:CDS |
| TTGTGAAAGAGAGTTCTCAA+TGG | 0.648650 | 4_3:-5288160 | Msa0625930:CDS |
| GAATAAATCAACTTCTTCAG+GGG | 0.654370 | 4_3:-5288400 | Msa0625930:CDS |
| CAAATACCTTATCTGGACAC+CGG | 0.660945 | 4_3:-5289180 | Msa0625930:CDS |
| TGAATCTTACGAGCATAACA+CGG | 0.663017 | 4_3:+5289093 | None:intergenic |
| TTGTCAAATTCAAGGTACAG+GGG | 0.685517 | 4_3:-5285268 | Msa0625930:intron |
| ATAGAGGTTCATCAACCAAG+TGG | 0.687302 | 4_3:-5283948 | Msa0625930:CDS |
| AGATTCAGGAAAGACAAACA+AGG | 0.727705 | 4_3:-5289077 | Msa0625930:CDS |
| AGATTCGGGAAAGACAAACA+AGG | 0.740401 | 4_3:-5284653 | Msa0625930:CDS |
| TATTTAATATTGAAACTACG+CGG | 0.743428 | 4_3:-5284884 | Msa0625930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGTCAAAAATAATAAATT+TGG | + | chr4_3:5284058-5284077 | None:intergenic | 10.0% |
| !!! | ACAATTTGATAATTTTTAAT+TGG | + | chr4_3:5284120-5284139 | None:intergenic | 10.0% |
| !!! | ATGATTAGTATAATAATTTT+TGG | - | chr4_3:5284400-5284419 | Msa0625930:CDS | 10.0% |
| !!! | TGATTAGTATAATAATTTTT+GGG | - | chr4_3:5284401-5284420 | Msa0625930:CDS | 10.0% |
| !! | TTAAAAAGTTATACTATATT+TGG | + | chr4_3:5286290-5286309 | None:intergenic | 10.0% |
| !! | AAATAAAATAAGATTTAATC+AGG | - | chr4_3:5286621-5286640 | Msa0625930:intron | 10.0% |
| !! | AATAAAATAAGATTTAATCA+GGG | - | chr4_3:5286622-5286641 | Msa0625930:intron | 10.0% |
| !!! | TATTATATAACATGATTTTA+AGG | - | chr4_3:5287479-5287498 | Msa0625930:intron | 10.0% |
| !!! | ATTATATAACATGATTTTAA+GGG | - | chr4_3:5287480-5287499 | Msa0625930:intron | 10.0% |
| !! | TTTAAGAACTAATTTAAAAA+TGG | - | chr4_3:5288344-5288363 | Msa0625930:CDS | 10.0% |
| !! | TTAAGAACTAATTTAAAAAT+GGG | - | chr4_3:5288345-5288364 | Msa0625930:CDS | 10.0% |
| !!! | AACTATTTGATAATTTTTAA+AGG | + | chr4_3:5288551-5288570 | None:intergenic | 10.0% |
| !! | AACAATACATAATATATGTA+AGG | - | chr4_3:5283851-5283870 | Msa0625930:CDS | 15.0% |
| !!! | AAATAAGACATTTTTTTTTG+GGG | + | chr4_3:5283891-5283910 | None:intergenic | 15.0% |
| !!! | GAAATAAGACATTTTTTTTT+GGG | + | chr4_3:5283892-5283911 | None:intergenic | 15.0% |
| !!! | TGAAATAAGACATTTTTTTT+TGG | + | chr4_3:5283893-5283912 | None:intergenic | 15.0% |
| !!! | TATAAATTCTAAGAACATTA+AGG | - | chr4_3:5284720-5284739 | Msa0625930:CDS | 15.0% |
| !!! | ATAAATTCTAAGAACATTAA+GGG | - | chr4_3:5284721-5284740 | Msa0625930:CDS | 15.0% |
| !! | AAAAAATCAATCATGATTAA+TGG | + | chr4_3:5286206-5286225 | None:intergenic | 15.0% |
| !! | AAACTTTGATTAAATAAATG+TGG | + | chr4_3:5286469-5286488 | None:intergenic | 15.0% |
| !!! | TAAATCTTATTTTATTTGAG+AGG | + | chr4_3:5286618-5286637 | None:intergenic | 15.0% |
| !!! | ATTTTATATTCTTTCTTAAG+GGG | + | chr4_3:5287074-5287093 | None:intergenic | 15.0% |
| !!! | CATTTTATATTCTTTCTTAA+GGG | + | chr4_3:5287075-5287094 | None:intergenic | 15.0% |
| !!! | AAACTCGTATTTTTTTATAA+TGG | - | chr4_3:5287197-5287216 | Msa0625930:intron | 15.0% |
| !! | TAAAAAAAAAACACAAAAAG+CGG | - | chr4_3:5287340-5287359 | Msa0625930:intron | 15.0% |
| !!! | TTATATAACATGATTTTAAG+GGG | - | chr4_3:5287481-5287500 | Msa0625930:intron | 15.0% |
| !! | TAAAACAAAAAGTTAACAAT+AGG | - | chr4_3:5287644-5287663 | Msa0625930:intron | 15.0% |
| !!! | TTTATTAAGTCTTGTATTTT+TGG | + | chr4_3:5287805-5287824 | None:intergenic | 15.0% |
| !! | AAAAATTATCAAATAGTTCA+AGG | - | chr4_3:5288553-5288572 | Msa0625930:CDS | 15.0% |
| !!! | AAAAGTTTTAATTACTCTAT+GGG | + | chr4_3:5288580-5288599 | None:intergenic | 15.0% |
| !!! | TAAAAGTTTTAATTACTCTA+TGG | + | chr4_3:5288581-5288600 | None:intergenic | 15.0% |
| !! | ATTAAGATAATAGTAAGTTT+CGG | + | chr4_3:5288647-5288666 | None:intergenic | 15.0% |
| !!! | AATCAAGAATTTTTAAAAAG+AGG | + | chr4_3:5288807-5288826 | None:intergenic | 15.0% |
| !! | ATATAAATAGTATGTTTCAT+AGG | - | chr4_3:5290349-5290368 | Msa0625930:CDS | 15.0% |
| !! | CTTTAATAATACTATGTCAA+AGG | - | chr4_3:5283772-5283791 | Msa0625930:CDS | 20.0% |
| !!! | ACAACTTTTAATTACTCTAT+GGG | + | chr4_3:5284150-5284169 | None:intergenic | 20.0% |
| !!! | TACAACTTTTAATTACTCTA+TGG | + | chr4_3:5284151-5284170 | None:intergenic | 20.0% |
| !! | TTCGATATTAAATATGAAGA+AGG | + | chr4_3:5284625-5284644 | None:intergenic | 20.0% |
| !! | ACTATGAAAAAATTCATAGA+AGG | - | chr4_3:5284653-5284672 | Msa0625930:CDS | 20.0% |
| !! | AGCTAACAATAATTCAAAAT+TGG | - | chr4_3:5284993-5285012 | Msa0625930:CDS | 20.0% |
| !! | AAAAATTTCTCAGGTAAATT+TGG | + | chr4_3:5285057-5285076 | None:intergenic | 20.0% |
| !!! | TTATCTTTTAGTTAGTTTCT+TGG | - | chr4_3:5285961-5285980 | Msa0625930:intron | 20.0% |
| !!! | TATCTTTTAGTTAGTTTCTT+GGG | - | chr4_3:5285962-5285981 | Msa0625930:intron | 20.0% |
| !! | ATGATTAATGGTTAGTAAAT+AGG | + | chr4_3:5286194-5286213 | None:intergenic | 20.0% |
| !!! | TCAAAGTTTACTTAATGTTT+TGG | - | chr4_3:5286480-5286499 | Msa0625930:intron | 20.0% |
| !!! | CCATTTTATATTCTTTCTTA+AGG | + | chr4_3:5287076-5287095 | None:intergenic | 20.0% |
| !! | CCTTAAGAAAGAATATAAAA+TGG | - | chr4_3:5287073-5287092 | Msa0625930:intron | 20.0% |
| !!! | TTTTTTATAATGGTGAGTAA+TGG | - | chr4_3:5287207-5287226 | Msa0625930:intron | 20.0% |
| !!! | TATATAACATGATTTTAAGG+GGG | - | chr4_3:5287482-5287501 | Msa0625930:intron | 20.0% |
| !! | CATTATATAAGTTAAATCCT+GGG | + | chr4_3:5287598-5287617 | None:intergenic | 20.0% |
| !! | AAAAATCCAATAATTGAGAT+GGG | + | chr4_3:5287680-5287699 | None:intergenic | 20.0% |
| !! | AAAAAATCCAATAATTGAGA+TGG | + | chr4_3:5287681-5287700 | None:intergenic | 20.0% |
| !! | TAATTATAGAAAAGGACAAT+GGG | + | chr4_3:5287781-5287800 | None:intergenic | 20.0% |
| !!! | TTTTTGGCTAATTATAGAAA+AGG | + | chr4_3:5287789-5287808 | None:intergenic | 20.0% |
| !! | TTAATAATATACCATGTCAA+AGG | - | chr4_3:5288148-5288167 | Msa0625930:CDS | 20.0% |
| !! | ATCACATTAATATCTCAAAT+GGG | - | chr4_3:5288284-5288303 | Msa0625930:CDS | 20.0% |
| !!! | GAATTTAATTTTTTGACTCT+TGG | + | chr4_3:5288452-5288471 | None:intergenic | 20.0% |
| !! | TTCAATATTAAATACGAAGA+AGG | + | chr4_3:5289049-5289068 | None:intergenic | 20.0% |
| !! | TATTTAATATTGAAACTACG+CGG | - | chr4_3:5289055-5289074 | Msa0625930:CDS | 20.0% |
| !! | AGCTAACAATAATTCAAAAT+TGG | - | chr4_3:5284993-5285012 | Msa0625930:CDS | 20.0% |
| ! | AAAGAATGTTGTAAATCTCT+TGG | + | chr4_3:5283552-5283571 | None:intergenic | 25.0% |
| ! | AAGTTAACAATGATTACAAC+AGG | + | chr4_3:5283596-5283615 | None:intergenic | 25.0% |
| ! | AGAGTTCATAAAATATCAGA+TGG | - | chr4_3:5283731-5283750 | Msa0625930:CDS | 25.0% |
| !! | ATTAAAGTCTCCTTTTATGT+TGG | + | chr4_3:5283759-5283778 | None:intergenic | 25.0% |
| ! | TATTAATGCTACAACAGATT+TGG | + | chr4_3:5283969-5283988 | None:intergenic | 25.0% |
| !!! | CAACTTTTAATTACTCTATG+GGG | + | chr4_3:5284149-5284168 | None:intergenic | 25.0% |
| ! | TAATGTACTTGTCAAATTCA+AGG | - | chr4_3:5284248-5284267 | Msa0625930:CDS | 25.0% |
| !! | TTTTCTTTGTCATTATGGAT+CGG | + | chr4_3:5284508-5284527 | None:intergenic | 25.0% |
| !! | GCAATTTTTCTTTGTCATTA+TGG | + | chr4_3:5284513-5284532 | None:intergenic | 25.0% |
| ! | AAATATGAAGAAGGTTTATG+AGG | + | chr4_3:5284616-5284635 | None:intergenic | 25.0% |
| !! | TAATATTTGTCATGCTTTTG+TGG | + | chr4_3:5284702-5284721 | None:intergenic | 25.0% |
| !! | AACCAAGTTGAATTCAAAAA+CGG | + | chr4_3:5284901-5284920 | None:intergenic | 25.0% |
| !! | ACATGATTTTCATTCCAAAA+AGG | + | chr4_3:5284940-5284959 | None:intergenic | 25.0% |
| ! | ATATCAAAGTTTGATAGAGA+AGG | - | chr4_3:5284966-5284985 | Msa0625930:CDS | 25.0% |
| ! | AGATTGAGAAATAATGATGA+TGG | + | chr4_3:5285024-5285043 | None:intergenic | 25.0% |
| ! | TCTGATTGCAAAATTAACAA+AGG | + | chr4_3:5285117-5285136 | None:intergenic | 25.0% |
| ! | TTTAAATTATCACCGTATTC+TGG | + | chr4_3:5285507-5285526 | None:intergenic | 25.0% |
| ! | ATAAGCATAATATGAAAGCT+TGG | - | chr4_3:5285616-5285635 | Msa0625930:intron | 25.0% |
| ! | TAAGCATAATATGAAAGCTT+GGG | - | chr4_3:5285617-5285636 | Msa0625930:intron | 25.0% |
| !! | GAAGAAGCAAAATCTTTTAT+TGG | + | chr4_3:5285849-5285868 | None:intergenic | 25.0% |
| ! | AAATAGTTAGAGATGTTTCA+TGG | - | chr4_3:5285929-5285948 | Msa0625930:intron | 25.0% |
| ! | AATAGTTAGAGATGTTTCAT+GGG | - | chr4_3:5285930-5285949 | Msa0625930:intron | 25.0% |
| ! | GACATTTATTTAAAAGACGA+AGG | + | chr4_3:5286128-5286147 | None:intergenic | 25.0% |
| ! | ACTATTATATTGCTAAAACG+AGG | + | chr4_3:5286159-5286178 | None:intergenic | 25.0% |
| !!! | CTTAATGTTTTGGTTTTATG+TGG | - | chr4_3:5286490-5286509 | Msa0625930:intron | 25.0% |
| !!! | TTCCAAATAATGTTTTGGTT+TGG | - | chr4_3:5286537-5286556 | Msa0625930:intron | 25.0% |
| !!! | TCCAAATAATGTTTTGGTTT+GGG | - | chr4_3:5286538-5286557 | Msa0625930:intron | 25.0% |
| ! | AAATAAGATTTAATCAGGGA+CGG | - | chr4_3:5286626-5286645 | Msa0625930:intron | 25.0% |
| ! | CGACAAAAAAATAAGTGATA+AGG | - | chr4_3:5286700-5286719 | Msa0625930:intron | 25.0% |
| ! | CATCACAATTTCAAATTGTT+CGG | - | chr4_3:5286746-5286765 | Msa0625930:intron | 25.0% |
| ! | ATTAGAAAACCAATAAAGAC+TGG | + | chr4_3:5286969-5286988 | None:intergenic | 25.0% |
| ! | TTAGTTCATTGGTAAGAATT+TGG | - | chr4_3:5287019-5287038 | Msa0625930:intron | 25.0% |
| !!! | TCATTACTTGCTATAAATTC+AGG | - | chr4_3:5287535-5287554 | Msa0625930:intron | 25.0% |
| !!! | CATTACTTGCTATAAATTCA+GGG | - | chr4_3:5287536-5287555 | Msa0625930:intron | 25.0% |
| ! | GCATTATATAAGTTAAATCC+TGG | + | chr4_3:5287599-5287618 | None:intergenic | 25.0% |
| !! | GATTTAACTTATATAATGCG+AGG | - | chr4_3:5287600-5287619 | Msa0625930:intron | 25.0% |
| !! | TCAAAACATCACATTTTTCA+TGG | - | chr4_3:5287720-5287739 | Msa0625930:intron | 25.0% |
| ! | CTAATTATAGAAAAGGACAA+TGG | + | chr4_3:5287782-5287801 | None:intergenic | 25.0% |
| ! | AAATAATGTGAAGAAGAGTT+TGG | + | chr4_3:5287833-5287852 | None:intergenic | 25.0% |
| ! | TATATTGAGAAGAGTTTAAG+TGG | + | chr4_3:5287894-5287913 | None:intergenic | 25.0% |
| ! | AAGTTAACAATGATTACAAC+AGG | + | chr4_3:5283596-5283615 | None:intergenic | 25.0% |
| ! | CATCACATTAATATCTCAAA+TGG | - | chr4_3:5288283-5288302 | Msa0625930:CDS | 25.0% |
| ! | TTTGAGTCTTTGTATATTTG+AGG | + | chr4_3:5288312-5288331 | None:intergenic | 25.0% |
| !!! | CAAGAGAATATTTCTACTTT+TGG | + | chr4_3:5288409-5288428 | None:intergenic | 25.0% |
| ! | TAATGTACTTGTCAAATTCA+AGG | - | chr4_3:5284248-5284267 | Msa0625930:CDS | 25.0% |
| !! | AAATTTTTGTCATGCTTTTG+TGG | + | chr4_3:5289126-5289145 | None:intergenic | 25.0% |
| ! | TGACAAAAATTTCACATTCT+AGG | - | chr4_3:5289134-5289153 | Msa0625930:CDS | 25.0% |
| !! | AACCAAGTTGAATTCAAAAA+TGG | + | chr4_3:5284901-5284920 | None:intergenic | 25.0% |
| !! | ACATGATTTTCATTCCAAAA+AGG | + | chr4_3:5284940-5284959 | None:intergenic | 25.0% |
| ! | ATATCAAAGTTTGATAGAGA+AGG | - | chr4_3:5284966-5284985 | Msa0625930:CDS | 25.0% |
| ! | AGATTGAGAAATAATGATGA+TGG | + | chr4_3:5285024-5285043 | None:intergenic | 25.0% |
| ! | AAAAATTTCTCAGGTAAATG+CGG | + | chr4_3:5289481-5289500 | None:intergenic | 25.0% |
| ! | TCTGATTGCAAAATTAACAA+AGG | + | chr4_3:5285117-5285136 | None:intergenic | 25.0% |
| ! | TAGATTCATAATCACTTCTT+GGG | + | chr4_3:5289785-5289804 | None:intergenic | 25.0% |
| ! | TGGTAGTAAATTATTGTGAA+TGG | + | chr4_3:5289821-5289840 | None:intergenic | 25.0% |
| !!! | AATTTACTACCAAAAGTACT+TGG | - | chr4_3:5289829-5289848 | Msa0625930:intron | 25.0% |
| ! | ATGAATAAATCAACTGTTAC+CGG | - | chr4_3:5289961-5289980 | Msa0625930:intron | 25.0% |
| ! | ATAAGCATAATATGAAAGCA+TGG | - | chr4_3:5290040-5290059 | Msa0625930:intron | 25.0% |
| !! | GAAGAAGCAAAATCTTTTAT+AGG | + | chr4_3:5285849-5285868 | None:intergenic | 25.0% |
| ! | CTTCTTCTTTCATTTATATG+AGG | - | chr4_3:5290286-5290305 | Msa0625930:intron | 25.0% |
| ! | CATTTATATGAGGAAATGTA+AGG | - | chr4_3:5290296-5290315 | Msa0625930:CDS | 25.0% |
| !!! | AAATGTAAGGATTTTTGGTT+TGG | - | chr4_3:5290309-5290328 | Msa0625930:CDS | 25.0% |
| !!! | TATCTTTTAGTTAGTTTGCT+TGG | - | chr4_3:5290381-5290400 | Msa0625930:CDS | 25.0% |
| !!! | ATCTTTTAGTTAGTTTGCTT+GGG | - | chr4_3:5290382-5290401 | Msa0625930:CDS | 25.0% |
| ATTACAAATGTCACAACCAA+TGG | - | chr4_3:5283704-5283723 | Msa0625930:CDS | 30.0% | |
| !! | ATGTATTGTTTTACCAACTG+AGG | + | chr4_3:5283841-5283860 | None:intergenic | 30.0% |
| CATAATATATGTAAGGTCCA+AGG | - | chr4_3:5283858-5283877 | Msa0625930:CDS | 30.0% | |
| !! | AATCAGTTTTGTGCTATGAT+TGG | + | chr4_3:5283942-5283961 | None:intergenic | 30.0% |
| GACAAAGAAAAATTGCTTGA+TGG | - | chr4_3:5284517-5284536 | Msa0625930:CDS | 30.0% | |
| GAAAAAATTCATAGAAGGTG+TGG | - | chr4_3:5284658-5284677 | Msa0625930:CDS | 30.0% | |
| TAATGGTTTAGGAAACCAAA+TGG | - | chr4_3:5284783-5284802 | Msa0625930:CDS | 30.0% | |
| ATTTCTCAGGTAAATTTGGT+CGG | + | chr4_3:5285053-5285072 | None:intergenic | 30.0% | |
| TCACAGTGAAAAAATTTCTC+AGG | + | chr4_3:5285066-5285085 | None:intergenic | 30.0% | |
| AATCTTCGTTGAAAAAGACA+CGG | - | chr4_3:5285194-5285213 | Msa0625930:intron | 30.0% | |
| AAATTTCTATCAAGCACACT+TGG | - | chr4_3:5285278-5285297 | Msa0625930:intron | 30.0% | |
| ! | GATTGAACACTCTTATTTGA+AGG | + | chr4_3:5285326-5285345 | None:intergenic | 30.0% |
| AGATTCATAATTGCTTCTTG+TGG | + | chr4_3:5285360-5285379 | None:intergenic | 30.0% | |
| TGGTAGTAACTTATTGTGAA+TGG | + | chr4_3:5285397-5285416 | None:intergenic | 30.0% | |
| !! | AAGTTACTACCAAAAGTACT+TGG | - | chr4_3:5285405-5285424 | Msa0625930:intron | 30.0% |
| ! | TCTTTCATACCAAGTACTTT+TGG | + | chr4_3:5285417-5285436 | None:intergenic | 30.0% |
| ACGAATAAATCAACTTCTTC+AGG | - | chr4_3:5285537-5285556 | Msa0625930:intron | 30.0% | |
| CGAATAAATCAACTTCTTCA+GGG | - | chr4_3:5285538-5285557 | Msa0625930:intron | 30.0% | |
| GAATAAATCAACTTCTTCAG+GGG | - | chr4_3:5285539-5285558 | Msa0625930:intron | 30.0% | |
| ATAGAAGTTTATCAAGCAAG+TGG | - | chr4_3:5285567-5285586 | Msa0625930:intron | 30.0% | |
| ACTAAGTTTATCTGATGTGT+TGG | - | chr4_3:5285653-5285672 | Msa0625930:intron | 30.0% | |
| ! | ACTACTTCTTTGTCTACTTT+TGG | - | chr4_3:5285678-5285697 | Msa0625930:intron | 30.0% |
| ATTATCTTGTATAGAAGCCA+TGG | + | chr4_3:5285735-5285754 | None:intergenic | 30.0% | |
| !!! | AAATGTAAGGATTTTTGGTC+CGG | - | chr4_3:5285885-5285904 | Msa0625930:intron | 30.0% |
| GATTTACGGTTTACTAACAT+AGG | - | chr4_3:5286567-5286586 | Msa0625930:intron | 30.0% | |
| ! | CTTTTTCTATACGACAATTG+AGG | - | chr4_3:5286994-5287013 | Msa0625930:intron | 30.0% |
| ! | AAAAACACAAAAAGCGGATT+TGG | - | chr4_3:5287346-5287365 | Msa0625930:intron | 30.0% |
| AAACTAGGTACAAGAGAAAT+GGG | + | chr4_3:5287572-5287591 | None:intergenic | 30.0% | |
| AAAAGTTAACAATAGGTAGC+AGG | - | chr4_3:5287651-5287670 | Msa0625930:intron | 30.0% | |
| ! | CACATTTTTCATGGTAGAAA+AGG | - | chr4_3:5287729-5287748 | Msa0625930:intron | 30.0% |
| AAACTCTTCTCAATATACCA+TGG | - | chr4_3:5287897-5287916 | Msa0625930:intron | 30.0% | |
| AGAGTCCATAAAATTTCAGA+TGG | - | chr4_3:5288105-5288124 | Msa0625930:CDS | 30.0% | |
| ATAGTTACATACCTTTGACA+TGG | + | chr4_3:5283786-5283805 | None:intergenic | 30.0% | |
| ! | CACAAGATTAATTTTGCAGA+TGG | + | chr4_3:5288201-5288220 | None:intergenic | 30.0% |
| ACATAGTACTACAACAGATT+TGG | + | chr4_3:5288253-5288272 | None:intergenic | 30.0% | |
| ! | CACCAAATTATTTCCACTTT+TGG | - | chr4_3:5288486-5288505 | Msa0625930:CDS | 30.0% |
| AGCCAAAAGTGGAAATAATT+TGG | + | chr4_3:5288491-5288510 | None:intergenic | 30.0% | |
| TATATCTCTCTCAAATCCAA+AGG | - | chr4_3:5288854-5288873 | Msa0625930:CDS | 30.0% | |
| ! | TTTTCTTCGTCATTATGGAT+TGG | + | chr4_3:5288932-5288951 | None:intergenic | 30.0% |
| TCCATAATGACGAAGAAAAA+CGG | - | chr4_3:5288933-5288952 | Msa0625930:CDS | 30.0% | |
| GAAGAAATTCATAGAAAGTG+CGG | - | chr4_3:5289082-5289101 | Msa0625930:CDS | 30.0% | |
| TTGTGGTAATCTTTACCATT+AGG | + | chr4_3:5289109-5289128 | None:intergenic | 30.0% | |
| CAATGTGCAAATACCTTATT+TGG | - | chr4_3:5289176-5289195 | Msa0625930:CDS | 30.0% | |
| !!! | AGCCATTTTTGAATTCAACT+TGG | - | chr4_3:5289320-5289339 | Msa0625930:CDS | 30.0% |
| TAGTCAAGCTCTTATCATTA+AGG | - | chr4_3:5285089-5285108 | Msa0625930:intron | 30.0% | |
| AATCTTCGTTGAAAAAGACA+CGG | - | chr4_3:5285194-5285213 | Msa0625930:intron | 30.0% | |
| AGATTCATAATCACTTCTTG+GGG | + | chr4_3:5289784-5289803 | None:intergenic | 30.0% | |
| CTAGATTCATAATCACTTCT+TGG | + | chr4_3:5289786-5289805 | None:intergenic | 30.0% | |
| ! | TTTTTCCTACCAAGTACTTT+TGG | + | chr4_3:5289841-5289860 | None:intergenic | 30.0% |
| AAAAATTCACTGTCTACTTC+TGG | - | chr4_3:5289856-5289875 | Msa0625930:intron | 30.0% | |
| CAAAAACAAGACGATTATGA+AGG | - | chr4_3:5289882-5289901 | Msa0625930:intron | 30.0% | |
| ACATCTTTACATCCACAATA+CGG | - | chr4_3:5289916-5289935 | Msa0625930:intron | 30.0% | |
| TTTAAATTCTCACCGTATTG+TGG | + | chr4_3:5289931-5289950 | None:intergenic | 30.0% | |
| TGAATAAATCAACTGTTACC+GGG | - | chr4_3:5289962-5289981 | Msa0625930:intron | 30.0% | |
| !! | TTTTGTTTCTCTTTACCACT+TGG | + | chr4_3:5290009-5290028 | None:intergenic | 30.0% |
| ! | ACTTTTGAATATGTTGCTCA+AGG | - | chr4_3:5290117-5290136 | Msa0625930:intron | 30.0% |
| TTTCCACTACAATAATGCTT+AGG | + | chr4_3:5290249-5290268 | None:intergenic | 30.0% | |
| ! | TGAGGAAATGTAAGGATTTT+TGG | - | chr4_3:5290304-5290323 | Msa0625930:CDS | 30.0% |
| !!! | TTTTTGGTTTGGTGTAAAGT+TGG | - | chr4_3:5290320-5290339 | Msa0625930:CDS | 30.0% |
| AAGTCACTAAGGATAGGATA+GGG | - | chr4_3:5283519-5283538 | Msa0625930:CDS | 35.0% | |
| ! | CTCTTTGAGGACTTTACAAA+AGG | - | chr4_3:5283641-5283660 | Msa0625930:CDS | 35.0% |
| TTTATGAACTCTTCCTCCAT+TGG | + | chr4_3:5283723-5283742 | None:intergenic | 35.0% | |
| TCTATCTCTCTCAAATCTAC+AGG | - | chr4_3:5284430-5284449 | Msa0625930:CDS | 35.0% | |
| ATGTAGAGTTGGATCATTTG+TGG | + | chr4_3:5284482-5284501 | None:intergenic | 35.0% | |
| TTGTGGTAATCCTTACCATT+AGG | + | chr4_3:5284685-5284704 | None:intergenic | 35.0% | |
| CAAAGTGCAAATACCTTATC+TGG | - | chr4_3:5284752-5284771 | Msa0625930:CDS | 35.0% | |
| TGAATCTTACGAGCATAACA+CGG | + | chr4_3:5284849-5284868 | None:intergenic | 35.0% | |
| AGATTCAGGAAAGACAAACA+AGG | - | chr4_3:5284862-5284881 | Msa0625930:CDS | 35.0% | |
| !!! | AGCCGTTTTTGAATTCAACT+TGG | - | chr4_3:5284896-5284915 | Msa0625930:CDS | 35.0% |
| ! | TACCAGAAAAGTCTCCTTTT+TGG | - | chr4_3:5284923-5284942 | Msa0625930:CDS | 35.0% |
| ! | TTCCAAAAAGGAGACTTTTC+TGG | + | chr4_3:5284928-5284947 | None:intergenic | 35.0% |
| !! | AAAGGTGTCATGAAAAGAGA+AGG | + | chr4_3:5285153-5285172 | None:intergenic | 35.0% |
| GCTAAAGCAGATGAGAAAAT+AGG | - | chr4_3:5285300-5285319 | Msa0625930:intron | 35.0% | |
| CAAAAACAAAGCGATTGTGA+AGG | - | chr4_3:5285458-5285477 | Msa0625930:intron | 35.0% | |
| GCGTCTTTATATCCAGAATA+CGG | - | chr4_3:5285492-5285511 | Msa0625930:intron | 35.0% | |
| ! | ACTTTTGGATATGTTGCTCA+AGG | - | chr4_3:5285693-5285712 | Msa0625930:intron | 35.0% |
| TTGTGAAAGAGAGTTCTCAA+TGG | - | chr4_3:5285779-5285798 | Msa0625930:intron | 35.0% | |
| TTTCCACTACAGTAATGCTT+AGG | + | chr4_3:5285825-5285844 | None:intergenic | 35.0% | |
| CTTCTTCTTTCATTTACACG+AGG | - | chr4_3:5285862-5285881 | Msa0625930:intron | 35.0% | |
| CATTTACACGAGGAAATGTA+AGG | - | chr4_3:5285872-5285891 | Msa0625930:intron | 35.0% | |
| ! | CGAGGAAATGTAAGGATTTT+TGG | - | chr4_3:5285880-5285899 | Msa0625930:intron | 35.0% |
| !!! | TTTGGTTTTATGTGGTGAGT+CGG | - | chr4_3:5286498-5286517 | Msa0625930:intron | 35.0% |
| ! | TGGGGTTCCAAATAATGTTT+TGG | - | chr4_3:5286532-5286551 | Msa0625930:intron | 35.0% |
| GCCCAAACCAAAACATTATT+TGG | + | chr4_3:5286542-5286561 | None:intergenic | 35.0% | |
| ! | CAATTGAGGTGTTAGTTCAT+TGG | - | chr4_3:5287008-5287027 | Msa0625930:intron | 35.0% |
| AGCAAATTTACACTTGATCG+TGG | + | chr4_3:5287299-5287318 | None:intergenic | 35.0% | |
| TTCCCAAAAAAAACAGAGAG+AGG | - | chr4_3:5287434-5287453 | Msa0625930:intron | 35.0% | |
| TCCCAAAAAAAACAGAGAGA+GGG | - | chr4_3:5287435-5287454 | Msa0625930:intron | 35.0% | |
| GCGGTTGTGTTATACATATA+GGG | - | chr4_3:5287506-5287525 | Msa0625930:intron | 35.0% | |
| CGGTTGTGTTATACATATAG+GGG | - | chr4_3:5287507-5287526 | Msa0625930:intron | 35.0% | |
| !! | TACTTGCTATAAATTCAGGG+TGG | - | chr4_3:5287539-5287558 | Msa0625930:intron | 35.0% |
| AACTAGGTACAAGAGAAATG+GGG | + | chr4_3:5287571-5287590 | None:intergenic | 35.0% | |
| GAAACTAGGTACAAGAGAAA+TGG | + | chr4_3:5287573-5287592 | None:intergenic | 35.0% | |
| AGGTAACCCATCTCAATTAT+TGG | - | chr4_3:5287671-5287690 | Msa0625930:intron | 35.0% | |
| TTATAGAAAAGGACAATGGG+TGG | + | chr4_3:5287778-5287797 | None:intergenic | 35.0% | |
| GTTTAAGTGGTAAGTAAGAG+AGG | + | chr4_3:5287881-5287900 | None:intergenic | 35.0% | |
| CAAAGAATGTTGTGAATCGA+AGG | + | chr4_3:5287927-5287946 | None:intergenic | 35.0% | |
| ! | CTCTTTGAGGACTTTACAAA+AGG | - | chr4_3:5283641-5283660 | Msa0625930:CDS | 35.0% |
| ATTACAAATGTCACAACCAG+TGG | - | chr4_3:5288078-5288097 | Msa0625930:CDS | 35.0% | |
| GTCCATAAAATTTCAGATGG+TGG | - | chr4_3:5288108-5288127 | Msa0625930:CDS | 35.0% | |
| !! | TGCCACCATCTGAAATTTTA+TGG | + | chr4_3:5288113-5288132 | None:intergenic | 35.0% |
| !! | TATGTTAACTTGTGCCCTAA+TGG | - | chr4_3:5288369-5288388 | Msa0625930:CDS | 35.0% |
| ! | TTGCTTAACATGTGCCATTA+GGG | + | chr4_3:5288386-5288405 | None:intergenic | 35.0% |
| ACAAGTTAATGAGCCAAAAG+TGG | + | chr4_3:5288502-5288521 | None:intergenic | 35.0% | |
| !! | CTCATTAACTTGTGCCTTAA+GGG | - | chr4_3:5288509-5288528 | Msa0625930:CDS | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | + | chr4_3:5288526-5288545 | None:intergenic | 35.0% |
| ACTTGTCAAATTCAAGGTAC+AGG | - | chr4_3:5288669-5288688 | Msa0625930:CDS | 35.0% | |
| CTTGTCAAATTCAAGGTACA+GGG | - | chr4_3:5288670-5288689 | Msa0625930:CDS | 35.0% | |
| TTGTCAAATTCAAGGTACAG+GGG | - | chr4_3:5288671-5288690 | Msa0625930:CDS | 35.0% | |
| AATGCTACTACAACAACTGA+AGG | - | chr4_3:5288703-5288722 | Msa0625930:CDS | 35.0% | |
| TGAGTCATTCTTCAAACCTT+TGG | + | chr4_3:5288873-5288892 | None:intergenic | 35.0% | |
| ATGTAGAGTTGGATCATTTG+TGG | + | chr4_3:5284482-5284501 | None:intergenic | 35.0% | |
| ATGATACATCATGCATAAGC+AGG | - | chr4_3:5288984-5289003 | Msa0625930:CDS | 35.0% | |
| GTTTATGAGATGAAGCTTTG+CGG | + | chr4_3:5289027-5289046 | None:intergenic | 35.0% | |
| !! | TTCACATTCTAGGAGCATTA+AGG | - | chr4_3:5289144-5289163 | Msa0625930:CDS | 35.0% |
| !! | TCACATTCTAGGAGCATTAA+GGG | - | chr4_3:5289145-5289164 | Msa0625930:CDS | 35.0% |
| ! | CAAATACCTTATTTGGACAC+CGG | - | chr4_3:5289183-5289202 | Msa0625930:CDS | 35.0% |
| TCACAGCGAAAAAATTTCTC+AGG | + | chr4_3:5289490-5289509 | None:intergenic | 35.0% | |
| !!! | GAGAAATTTTTTCGCTGTGA+TGG | - | chr4_3:5289490-5289509 | Msa0625930:CDS | 35.0% |
| !! | AAAGGTGTCATGAAAAGAGA+AGG | + | chr4_3:5285153-5285172 | None:intergenic | 35.0% |
| GCTAAAGCAGATGAGAAAAT+AGG | - | chr4_3:5285300-5285319 | Msa0625930:intron | 35.0% | |
| GATTGAACACTCTTACTTGA+AGG | + | chr4_3:5289750-5289769 | None:intergenic | 35.0% | |
| !! | TACTACCAAAAGTACTTGGT+AGG | - | chr4_3:5285409-5285428 | Msa0625930:intron | 35.0% |
| GAATAAATCAACTGTTACCG+GGG | - | chr4_3:5289963-5289982 | Msa0625930:intron | 35.0% | |
| ATGAACCTCTATAATTTCCC+CGG | + | chr4_3:5289983-5290002 | None:intergenic | 35.0% | |
| ACCAAGTTTATCTGATGTGT+TGG | - | chr4_3:5290077-5290096 | Msa0625930:intron | 35.0% | |
| ACCAACACATCAGATAAACT+TGG | + | chr4_3:5285657-5285676 | None:intergenic | 35.0% | |
| !! | ATTAGCTTGTATAGAAGCCA+TGG | + | chr4_3:5290159-5290178 | None:intergenic | 35.0% |
| TTGTGAAAGAGAGTTCTCAA+TGG | - | chr4_3:5285779-5285798 | Msa0625930:intron | 35.0% | |
| GGAAATCCTTCAAGTCACTA+AGG | - | chr4_3:5283508-5283527 | Msa0625930:CDS | 40.0% | |
| TCCTTCAAGTCACTAAGGAT+AGG | - | chr4_3:5283513-5283532 | Msa0625930:CDS | 40.0% | |
| TCCTATCCTTAGTGACTTGA+AGG | + | chr4_3:5283517-5283536 | None:intergenic | 40.0% | |
| CAAGTCACTAAGGATAGGAT+AGG | - | chr4_3:5283518-5283537 | Msa0625930:CDS | 40.0% | |
| TGAGGACTTTACAAAAGGCA+AGG | - | chr4_3:5283646-5283665 | Msa0625930:CDS | 40.0% | |
| ! | AAAGGCAAGGTACTACTTGT+TGG | - | chr4_3:5283659-5283678 | Msa0625930:CDS | 40.0% |
| ACAAATGTCACAACCAATGG+AGG | - | chr4_3:5283707-5283726 | Msa0625930:CDS | 40.0% | |
| ! | TCAGATGGTGCCAACATAAA+AGG | - | chr4_3:5283746-5283765 | Msa0625930:CDS | 40.0% |
| !!! | TTTTTTGGGGCTTTGAACCT+TGG | + | chr4_3:5283878-5283897 | None:intergenic | 40.0% |
| ACTTGTCAAATTCAAGGTGC+AGG | - | chr4_3:5284254-5284273 | Msa0625930:CDS | 40.0% | |
| TACAAACCTGTTGTTGTAGC+TGG | + | chr4_3:5284318-5284337 | None:intergenic | 40.0% | |
| CAAATACCTTATCTGGACAC+CGG | - | chr4_3:5284759-5284778 | Msa0625930:CDS | 40.0% | |
| TGGTTTCCTAAACCATTAGC+CGG | + | chr4_3:5284781-5284800 | None:intergenic | 40.0% | |
| AGGAAACCAAATGGTTAGCA+TGG | - | chr4_3:5284792-5284811 | Msa0625930:CDS | 40.0% | |
| GTGTTATGCTCGTAAGATTC+AGG | - | chr4_3:5284848-5284867 | Msa0625930:CDS | 40.0% | |
| !!! | CATGACACCTTTTTTCAGCA+AGG | - | chr4_3:5285161-5285180 | Msa0625930:intron | 40.0% |
| TCAAGCTCCTTGCTGAAAAA+AGG | + | chr4_3:5285171-5285190 | None:intergenic | 40.0% | |
| ! | AGACACGGTTTTTCATCATC+TGG | - | chr4_3:5285209-5285228 | Msa0625930:intron | 40.0% |
| ! | GACACGGTTTTTCATCATCT+GGG | - | chr4_3:5285210-5285229 | Msa0625930:intron | 40.0% |
| GCTTCTTGTGGAGTTAAAGT+AGG | + | chr4_3:5285348-5285367 | None:intergenic | 40.0% | |
| ! | TTAGGAGGAGCATGATAACA+TGG | + | chr4_3:5285807-5285826 | None:intergenic | 40.0% |
| ATCACTAACCAGCTTTACAC+CGG | + | chr4_3:5285907-5285926 | None:intergenic | 40.0% | |
| TGAGTCGGAAATCTATAGGT+GGG | - | chr4_3:5286513-5286532 | Msa0625930:intron | 40.0% | |
| ! | GGTTTGGGCTTGATGATTTA+CGG | - | chr4_3:5286553-5286572 | Msa0625930:intron | 40.0% |
| CGGGGTGGCAAAAAAAATTA+CGG | - | chr4_3:5286666-5286685 | Msa0625930:intron | 40.0% | |
| ! | CCACAACTCATTTGAAACGA+TGG | + | chr4_3:5286797-5286816 | None:intergenic | 40.0% |
| CCATCGTTTCAAATGAGTTG+TGG | - | chr4_3:5286794-5286813 | Msa0625930:intron | 40.0% | |
| ! | GAGTTGTGGTGTTGAATTTG+AGG | - | chr4_3:5286808-5286827 | Msa0625930:intron | 40.0% |
| ATAGGACTATCTTCGACGAA+GGG | + | chr4_3:5286881-5286900 | None:intergenic | 40.0% | |
| AATAGGACTATCTTCGACGA+AGG | + | chr4_3:5286882-5286901 | None:intergenic | 40.0% | |
| CCAATAAAGACTGGACTCAT+CGG | + | chr4_3:5286960-5286979 | None:intergenic | 40.0% | |
| GATTCAAACTCAACGCTTAG+AGG | + | chr4_3:5287052-5287071 | None:intergenic | 40.0% | |
| TTCGTGGAATTGCATTTCGT+GGG | + | chr4_3:5287274-5287293 | None:intergenic | 40.0% | |
| ATTCGTGGAATTGCATTTCG+TGG | + | chr4_3:5287275-5287294 | None:intergenic | 40.0% | |
| ! | AACACAAAAAGCGGATTTGG+TGG | - | chr4_3:5287349-5287368 | Msa0625930:intron | 40.0% |
| !!! | CCCCTCTCTCTGTTTTTTTT+GGG | + | chr4_3:5287439-5287458 | None:intergenic | 40.0% |
| CCCAAAAAAAACAGAGAGAG+GGG | - | chr4_3:5287436-5287455 | Msa0625930:intron | 40.0% | |
| !!! | ACCCCTCTCTCTGTTTTTTT+TGG | + | chr4_3:5287440-5287459 | None:intergenic | 40.0% |
| TTAAATCCTGGGACGAAACT+AGG | + | chr4_3:5287587-5287606 | None:intergenic | 40.0% | |
| CAATGGGTGGAGTTTAACAT+GGG | + | chr4_3:5287765-5287784 | None:intergenic | 40.0% | |
| ACAATGGGTGGAGTTTAACA+TGG | + | chr4_3:5287766-5287785 | None:intergenic | 40.0% | |
| TGTGAATCGAAGGATTTCCA+TGG | + | chr4_3:5287917-5287936 | None:intergenic | 40.0% | |
| TGAGGACTTTACAAAAGGCA+AGG | - | chr4_3:5283646-5283665 | Msa0625930:CDS | 40.0% | |
| !! | AAAGGCAAGGTGCTATTTGT+TGG | - | chr4_3:5288033-5288052 | Msa0625930:intron | 40.0% |
| ! | TCAGATGGTGGCAACATAAA+AGG | - | chr4_3:5288120-5288139 | Msa0625930:CDS | 40.0% |
| ! | GTTGCTTAACATGTGCCATT+AGG | + | chr4_3:5288387-5288406 | None:intergenic | 40.0% |
| !! | GCTCATTAACTTGTGCCTTA+AGG | - | chr4_3:5288508-5288527 | Msa0625930:CDS | 40.0% |
| AAACCTGTTGTTGTAGCTGT+TGG | + | chr4_3:5288733-5288752 | None:intergenic | 40.0% | |
| CGAGCTGAATGGAAATATCA+TGG | + | chr4_3:5288767-5288786 | None:intergenic | 40.0% | |
| ! | TGGATTGGAGTATGTAGAGT+TGG | + | chr4_3:5288917-5288936 | None:intergenic | 40.0% |
| !!! | GCCGTTTTTCTTCGTCATTA+TGG | + | chr4_3:5288937-5288956 | None:intergenic | 40.0% |
| !!! | CTTGATGGACTTTTAGCTTC+TGG | - | chr4_3:5288956-5288975 | Msa0625930:CDS | 40.0% |
| AGGGAACCAAATTGTTAGCA+TGG | - | chr4_3:5289216-5289235 | Msa0625930:CDS | 40.0% | |
| TTGCAGCCATGCTAACAATT+TGG | + | chr4_3:5289225-5289244 | None:intergenic | 40.0% | |
| CGAATCTTACAAGCATCACA+CGG | + | chr4_3:5289273-5289292 | None:intergenic | 40.0% | |
| CGTGTGATGCTTGTAAGATT+CGG | - | chr4_3:5289271-5289290 | Msa0625930:CDS | 40.0% | |
| GTGTGATGCTTGTAAGATTC+GGG | - | chr4_3:5289272-5289291 | Msa0625930:CDS | 40.0% | |
| AGATTCGGGAAAGACAAACA+AGG | - | chr4_3:5289286-5289305 | Msa0625930:CDS | 40.0% | |
| ATTTCTCAGGTAAATGCGGT+CGG | + | chr4_3:5289477-5289496 | None:intergenic | 40.0% | |
| !!! | CATGACACCTTTTTTCAGCA+AGG | - | chr4_3:5285161-5285180 | Msa0625930:intron | 40.0% |
| TCAAGCTCCTTGCTGAAAAA+AGG | + | chr4_3:5285171-5285190 | None:intergenic | 40.0% | |
| ! | AGACACGGTTTTTCATCATC+TGG | - | chr4_3:5285209-5285228 | Msa0625930:intron | 40.0% |
| ! | GACACGGTTTTTCATCATCT+GGG | - | chr4_3:5285210-5285229 | Msa0625930:intron | 40.0% |
| AATTCACTGTCTACTTCTGG+CGG | - | chr4_3:5289859-5289878 | Msa0625930:intron | 40.0% | |
| TGTTACCGGGGAAATTATAG+AGG | - | chr4_3:5289975-5289994 | Msa0625930:intron | 40.0% | |
| ATAGAGGTTCATCAACCAAG+TGG | - | chr4_3:5289991-5290010 | Msa0625930:intron | 40.0% | |
| TGAATATGTTGCTCAAGGCT+TGG | - | chr4_3:5290122-5290141 | Msa0625930:intron | 40.0% | |
| GAATATGTTGCTCAAGGCTT+GGG | - | chr4_3:5290123-5290142 | Msa0625930:intron | 40.0% | |
| ! | TTAGGAGGAGCATGATAACA+AGG | + | chr4_3:5285807-5285826 | None:intergenic | 40.0% |
| CCACTACAATAATGCTTAGG+AGG | + | chr4_3:5290246-5290265 | None:intergenic | 40.0% | |
| CCTCCTAAGCATTATTGTAG+TGG | - | chr4_3:5290243-5290262 | Msa0625930:intron | 40.0% | |
| CACAAGCTTCTCTCTCTTTG+AGG | - | chr4_3:5283628-5283647 | Msa0625930:CDS | 45.0% | |
| TGTCAAATTCAAGGTGCAGG+AGG | - | chr4_3:5284257-5284276 | Msa0625930:CDS | 45.0% | |
| GAAAGACCAGCTACAACAAC+AGG | - | chr4_3:5284309-5284328 | Msa0625930:CDS | 45.0% | |
| TGGATCGGAGTATGTAGAGT+TGG | + | chr4_3:5284493-5284512 | None:intergenic | 45.0% | |
| ATGATGCCTCATGCATAAGC+AGG | - | chr4_3:5284560-5284579 | Msa0625930:CDS | 45.0% | |
| CTGTAACCTGCTTATGCATG+AGG | + | chr4_3:5284569-5284588 | None:intergenic | 45.0% | |
| ! | CATAGAAGGTGTGGACCTAA+TGG | - | chr4_3:5284667-5284686 | Msa0625930:CDS | 45.0% |
| AAGGTGTGGACCTAATGGTA+AGG | - | chr4_3:5284672-5284691 | Msa0625930:CDS | 45.0% | |
| TTGCAGCCATGCTAACCATT+TGG | + | chr4_3:5284801-5284820 | None:intergenic | 45.0% | |
| CTTCATTCGAAGGGTGGAAA+AGG | + | chr4_3:5285242-5285261 | None:intergenic | 45.0% | |
| TGGATATGTTGCTCAAGGCT+TGG | - | chr4_3:5285698-5285717 | Msa0625930:intron | 45.0% | |
| GGATATGTTGCTCAAGGCTT+GGG | - | chr4_3:5285699-5285718 | Msa0625930:intron | 45.0% | |
| CTCAAGGCTTGGGAAATTTG+AGG | - | chr4_3:5285709-5285728 | Msa0625930:intron | 45.0% | |
| GAGAACTCTCTTTCACAAGC+TGG | + | chr4_3:5285777-5285796 | None:intergenic | 45.0% | |
| CCACTACAGTAATGCTTAGG+AGG | + | chr4_3:5285822-5285841 | None:intergenic | 45.0% | |
| CCTCCTAAGCATTACTGTAG+TGG | - | chr4_3:5285819-5285838 | Msa0625930:intron | 45.0% | |
| !! | TTTTTGGTCCGGTGTAAAGC+TGG | - | chr4_3:5285896-5285915 | Msa0625930:intron | 45.0% |
| !! | TCTGACCTTCTGAAGCATGT+CGG | + | chr4_3:5286437-5286456 | None:intergenic | 45.0% |
| GTGGTGAGTCGGAAATCTAT+AGG | - | chr4_3:5286509-5286528 | Msa0625930:intron | 45.0% | |
| GTGAGTCGGAAATCTATAGG+TGG | - | chr4_3:5286512-5286531 | Msa0625930:intron | 45.0% | |
| GAGTCGGAAATCTATAGGTG+GGG | - | chr4_3:5286514-5286533 | Msa0625930:intron | 45.0% | |
| CGGAGCCAGAAAAATTGAGT+CGG | - | chr4_3:5286646-5286665 | Msa0625930:intron | 45.0% | |
| GGAGCCAGAAAAATTGAGTC+GGG | - | chr4_3:5286647-5286666 | Msa0625930:intron | 45.0% | |
| GAGCCAGAAAAATTGAGTCG+GGG | - | chr4_3:5286648-5286667 | Msa0625930:intron | 45.0% | |
| GTGCATCACACGTCTCAAAT+AGG | + | chr4_3:5286899-5286918 | None:intergenic | 45.0% | |
| AAAGACTGGACTCATCGGAA+GGG | + | chr4_3:5286955-5286974 | None:intergenic | 45.0% | |
| TAAAGACTGGACTCATCGGA+AGG | + | chr4_3:5286956-5286975 | None:intergenic | 45.0% | |
| CCGATGAGTCCAGTCTTTAT+TGG | - | chr4_3:5286957-5286976 | Msa0625930:intron | 45.0% | |
| GCATTTCGTGGGAAATAGCA+TGG | + | chr4_3:5287263-5287282 | None:intergenic | 45.0% | |
| ACACTTGATCGTGGTATTCG+TGG | + | chr4_3:5287290-5287309 | None:intergenic | 45.0% | |
| !! | AGCGGATTTGGTGGAAAACA+TGG | - | chr4_3:5287358-5287377 | Msa0625930:intron | 45.0% |
| !! | GCGGATTTGGTGGAAAACAT+GGG | - | chr4_3:5287359-5287378 | Msa0625930:intron | 45.0% |
| !! | CGGATTTGGTGGAAAACATG+GGG | - | chr4_3:5287360-5287379 | Msa0625930:intron | 45.0% |
| CACAAGCTTCTCTCTCTTTG+AGG | - | chr4_3:5283628-5283647 | Msa0625930:CDS | 45.0% | |
| ACAAATGTCACAACCAGTGG+AGG | - | chr4_3:5288081-5288100 | Msa0625930:CDS | 45.0% | |
| TTTATGGACTCTTCCTCCAC+TGG | + | chr4_3:5288097-5288116 | None:intergenic | 45.0% | |
| AGACCAACAGCTACAACAAC+AGG | - | chr4_3:5288727-5288746 | Msa0625930:CDS | 45.0% | |
| ATTGCGATTTGCGAGCTGAA+TGG | + | chr4_3:5288778-5288797 | None:intergenic | 45.0% | |
| GACGAAGAAAAACGGCTTGA+TGG | - | chr4_3:5288941-5288960 | Msa0625930:CDS | 45.0% | |
| ! | CATAGAAAGTGCGGACCTAA+TGG | - | chr4_3:5289091-5289110 | Msa0625930:CDS | 45.0% |
| CATTAGCCGGTGTCCAAATA+AGG | + | chr4_3:5289192-5289211 | None:intergenic | 45.0% | |
| ! | CTTATTTGGACACCGGCTAA+TGG | - | chr4_3:5289190-5289209 | Msa0625930:CDS | 45.0% |
| TGGTTCCCTAAACCATTAGC+CGG | + | chr4_3:5289205-5289224 | None:intergenic | 45.0% | |
| ! | TACCAGAGACGTCTCCTTTT+TGG | - | chr4_3:5289347-5289366 | Msa0625930:CDS | 45.0% |
| TTCCAAAAAGGAGACGTCTC+TGG | + | chr4_3:5289352-5289371 | None:intergenic | 45.0% | |
| CTTCATTCGAAGGGTGGAAA+AGG | + | chr4_3:5285242-5285261 | None:intergenic | 45.0% | |
| GTCTCCATGCTTCATTCGAA+GGG | + | chr4_3:5289675-5289694 | None:intergenic | 45.0% | |
| AGTCTCCATGCTTCATTCGA+AGG | + | chr4_3:5289676-5289695 | None:intergenic | 45.0% | |
| ACTTCTTGGGGAGTTGAAAG+AGG | + | chr4_3:5289772-5289791 | None:intergenic | 45.0% | |
| CTCAAGGCTTGGGAAATTTG+AGG | - | chr4_3:5285709-5285728 | Msa0625930:intron | 45.0% | |
| GAGAACTCTCTTTCACAAGC+TGG | + | chr4_3:5285777-5285796 | None:intergenic | 45.0% | |
| !! | AATTGATATTTATAAAATTA+GGG | + | chr4_3:5287133-5287152 | None:intergenic | 5.0% |
| !! | AAATTGATATTTATAAAATT+AGG | + | chr4_3:5287134-5287153 | None:intergenic | 5.0% |
| !!! | ATCAAATTTTATATAATTTT+TGG | - | chr4_3:5287172-5287191 | Msa0625930:intron | 5.0% |
| !!! | ATTAATAGTATAATAATTTT+TGG | - | chr4_3:5288824-5288843 | Msa0625930:CDS | 5.0% |
| !!! | TTAATAGTATAATAATTTTT+GGG | - | chr4_3:5288825-5288844 | Msa0625930:CDS | 5.0% |
| TCTCGTGAGCTTACCTCAGT+TGG | - | chr4_3:5283825-5283844 | Msa0625930:CDS | 50.0% | |
| CATTAGCCGGTGTCCAGATA+AGG | + | chr4_3:5284768-5284787 | None:intergenic | 50.0% | |
| ! | CTTATCTGGACACCGGCTAA+TGG | - | chr4_3:5284766-5284785 | Msa0625930:CDS | 50.0% |
| ! | TGGACACCGGCTAATGGTTT+AGG | - | chr4_3:5284772-5284791 | Msa0625930:CDS | 50.0% |
| CGAGCATAACACGGTTTGTG+AGG | + | chr4_3:5284840-5284859 | None:intergenic | 50.0% | |
| GTCTCCACGCTTCATTCGAA+GGG | + | chr4_3:5285251-5285270 | None:intergenic | 50.0% | |
| AGTCTCCACGCTTCATTCGA+AGG | + | chr4_3:5285252-5285271 | None:intergenic | 50.0% | |
| ! | GCTTGGGAAATTTGAGGCCA+TGG | - | chr4_3:5285715-5285734 | Msa0625930:intron | 50.0% |
| ! | CCACCCCGACTCAATTTTTC+TGG | + | chr4_3:5286654-5286673 | None:intergenic | 50.0% |
| CCAGAAAAATTGAGTCGGGG+TGG | - | chr4_3:5286651-5286670 | Msa0625930:intron | 50.0% | |
| CTTGTACCTAGTTTCGTCCC+AGG | - | chr4_3:5287578-5287597 | Msa0625930:intron | 50.0% | |
| ! | TGGACACCGGCTAATGGTTT+AGG | - | chr4_3:5284772-5284791 | Msa0625930:CDS | 50.0% |
| ! | GGACACCGGCTAATGGTTTA+GGG | - | chr4_3:5284773-5284792 | Msa0625930:CDS | 50.0% |
| CAAGCATCACACGGTTTGTG+AGG | + | chr4_3:5289264-5289283 | None:intergenic | 50.0% | |
| TCCACCCTTCGAATGAAGCA+TGG | - | chr4_3:5289668-5289687 | Msa0625930:CDS | 50.0% | |
| TCCATGCTTCATTCGAAGGG+TGG | + | chr4_3:5289672-5289691 | None:intergenic | 50.0% | |
| ! | GCTTGGGAAATTTGAGGCCA+TGG | - | chr4_3:5285715-5285734 | Msa0625930:intron | 50.0% |
| TCCACCCTTCGAATGAAGCG+TGG | - | chr4_3:5285244-5285263 | Msa0625930:CDS | 55.0% | |
| TCCACGCTTCATTCGAAGGG+TGG | + | chr4_3:5285248-5285267 | None:intergenic | 55.0% | |
| CAGCTCCGACATGCTTCAGA+AGG | - | chr4_3:5286429-5286448 | Msa0625930:intron | 55.0% | |
| ! | GGGGTGCTAGTGTTATTCGC+AGG | - | chr4_3:5287379-5287398 | Msa0625930:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5283506 | 5290455 | 5283506 | ID=Msa0625930;Name=Msa0625930 |
| chr4_3 | mRNA | 5283506 | 5290455 | 5283506 | ID=Msa0625930-mRNA-1;Parent=Msa0625930;Name=Msa0625930-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.4|1|1|1|5|0|1110 |
| chr4_3 | exon | 5290294 | 5290455 | 5290294 | ID=Msa0625930-mRNA-1:exon:1496;Parent=Msa0625930-mRNA-1 |
| chr4_3 | exon | 5289631 | 5289691 | 5289631 | ID=Msa0625930-mRNA-1:exon:1495;Parent=Msa0625930-mRNA-1 |
| chr4_3 | exon | 5288044 | 5289509 | 5288044 | ID=Msa0625930-mRNA-1:exon:1494;Parent=Msa0625930-mRNA-1 |
| chr4_3 | exon | 5285213 | 5285276 | 5285213 | ID=Msa0625930-mRNA-1:exon:1493;Parent=Msa0625930-mRNA-1 |
| chr4_3 | exon | 5283506 | 5285085 | 5283506 | ID=Msa0625930-mRNA-1:exon:1492;Parent=Msa0625930-mRNA-1 |
| chr4_3 | CDS | 5290294 | 5290455 | 5290294 | ID=Msa0625930-mRNA-1:cds;Parent=Msa0625930-mRNA-1 |
| chr4_3 | CDS | 5289631 | 5289691 | 5289631 | ID=Msa0625930-mRNA-1:cds;Parent=Msa0625930-mRNA-1 |
| chr4_3 | CDS | 5288044 | 5289509 | 5288044 | ID=Msa0625930-mRNA-1:cds;Parent=Msa0625930-mRNA-1 |
| chr4_3 | CDS | 5285213 | 5285276 | 5285213 | ID=Msa0625930-mRNA-1:cds;Parent=Msa0625930-mRNA-1 |
| chr4_3 | CDS | 5283506 | 5285085 | 5283506 | ID=Msa0625930-mRNA-1:cds;Parent=Msa0625930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
