Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013350 | XP_039683556.1 | 99.394 | 330 | 2 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013350 | sp|P49730|RIR2_TOBAC | 85.152 | 330 | 48 | 1 | 1 | 330 | 1 | 329 | 0.0 | 584 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013350 | A0A396GVD1 | 99.394 | 330 | 2 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048510 | Msa1013350 | 0.805321 | 1.412563e-49 | -8.615850e-47 |
| Msa0052480 | Msa1013350 | 0.823958 | 1.046251e-53 | -8.615850e-47 |
| Msa0053070 | Msa1013350 | 0.813538 | 2.433095e-51 | -8.615850e-47 |
| Msa0065020 | Msa1013350 | 0.827668 | 1.378015e-54 | -8.615850e-47 |
| Msa0077560 | Msa1013350 | 0.821315 | 4.309367e-53 | -8.615850e-47 |
| Msa0094780 | Msa1013350 | 0.821440 | 4.033837e-53 | -8.615850e-47 |
| Msa0097890 | Msa1013350 | 0.800506 | 1.395877e-48 | -8.615850e-47 |
| Msa0607800 | Msa1013350 | 0.804556 | 2.040841e-49 | -8.615850e-47 |
| Msa0621710 | Msa1013350 | 0.800376 | 1.483400e-48 | -8.615850e-47 |
| Msa0624900 | Msa1013350 | 0.840551 | 8.124001e-58 | -8.615850e-47 |
| Msa0641990 | Msa1013350 | 0.805416 | 1.349113e-49 | -8.615850e-47 |
| Msa0647280 | Msa1013350 | 0.801643 | 8.173583e-49 | -8.615850e-47 |
| Msa0658640 | Msa1013350 | 0.845453 | 4.023392e-59 | -8.615850e-47 |
| Msa0703600 | Msa1013350 | 0.839455 | 1.568755e-57 | -8.615850e-47 |
| Msa0709200 | Msa1013350 | 0.842603 | 2.337890e-58 | -8.615850e-47 |
| Msa0709440 | Msa1013350 | 0.852812 | 3.610767e-61 | -8.615850e-47 |
| Msa0714790 | Msa1013350 | 0.811896 | 5.567316e-51 | -8.615850e-47 |
| Msa0735780 | Msa1013350 | 0.848415 | 6.219448e-60 | -8.615850e-47 |
| Msa0754430 | Msa1013350 | 0.803261 | 3.793701e-49 | -8.615850e-47 |
| Msa0756820 | Msa1013350 | 0.801599 | 8.346975e-49 | -8.615850e-47 |
| Msa0773630 | Msa1013350 | 0.829506 | 4.955234e-55 | -8.615850e-47 |
| Msa0795870 | Msa1013350 | 0.821683 | 3.544618e-53 | -8.615850e-47 |
| Msa0804000 | Msa1013350 | 0.803252 | 3.809286e-49 | -8.615850e-47 |
| Msa0818880 | Msa1013350 | 0.818607 | 1.794428e-52 | -8.615850e-47 |
| Msa0824450 | Msa1013350 | 0.857175 | 1.952550e-62 | -8.615850e-47 |
| Msa0833650 | Msa1013350 | 0.808573 | 2.898308e-50 | -8.615850e-47 |
| Msa0836150 | Msa1013350 | 0.805618 | 1.223523e-49 | -8.615850e-47 |
| Msa0842070 | Msa1013350 | 0.804249 | 2.365657e-49 | -8.615850e-47 |
| Msa0123070 | Msa1013350 | 0.801011 | 1.100951e-48 | -8.615850e-47 |
| Msa0140280 | Msa1013350 | 0.812698 | 3.718700e-51 | -8.615850e-47 |
| Msa0189900 | Msa1013350 | 0.819800 | 9.600990e-53 | -8.615850e-47 |
| Msa0190570 | Msa1013350 | 0.823166 | 1.602936e-53 | -8.615850e-47 |
| Msa0225610 | Msa1013350 | 0.800730 | 1.256473e-48 | -8.615850e-47 |
| Msa0225860 | Msa1013350 | 0.805709 | 1.171268e-49 | -8.615850e-47 |
| Msa0367520 | Msa1013350 | 0.825949 | 3.546782e-54 | -8.615850e-47 |
| Msa0371270 | Msa1013350 | 0.811196 | 7.900157e-51 | -8.615850e-47 |
| Msa0380670 | Msa1013350 | 0.811645 | 6.310451e-51 | -8.615850e-47 |
| Msa0419540 | Msa1013350 | 0.823695 | 1.205894e-53 | -8.615850e-47 |
| Msa0430300 | Msa1013350 | 0.821785 | 3.356899e-53 | -8.615850e-47 |
| Msa0432010 | Msa1013350 | 0.809932 | 1.482023e-50 | -8.615850e-47 |
| Msa0465530 | Msa1013350 | 0.809661 | 1.694263e-50 | -8.615850e-47 |
| Msa0481890 | Msa1013350 | 0.853511 | 2.276697e-61 | -8.615850e-47 |
| Msa0980290 | Msa1013350 | 0.816628 | 5.014115e-52 | -8.615850e-47 |
| Msa1013350 | Msa1037540 | 0.807931 | 3.972422e-50 | -8.615850e-47 |
| Msa1013350 | Msa1042880 | 0.824777 | 6.715108e-54 | -8.615850e-47 |
| Msa1013350 | Msa1084530 | 0.854489 | 1.189979e-61 | -8.615850e-47 |
| Msa1013350 | Msa1094010 | 0.967127 | 7.509807e-127 | -8.615850e-47 |
| Msa1013350 | Msa1116220 | 0.802451 | 5.575206e-49 | -8.615850e-47 |
| Msa1013350 | Msa1125820 | 0.848821 | 4.799643e-60 | -8.615850e-47 |
| Msa1013350 | Msa1125990 | 0.849433 | 3.244030e-60 | -8.615850e-47 |
| Msa1013350 | Msa1132530 | 0.834812 | 2.413228e-56 | -8.615850e-47 |
| Msa1013350 | Msa1132840 | 0.808386 | 3.177816e-50 | -8.615850e-47 |
| Msa1013350 | Msa1157870 | 0.803543 | 3.316140e-49 | -8.615850e-47 |
| Msa1013350 | Msa1171290 | 0.854649 | 1.069435e-61 | -8.615850e-47 |
| Msa1013350 | Msa1192570 | 0.835348 | 1.767738e-56 | -8.615850e-47 |
| Msa1013350 | Msa1200890 | 0.831286 | 1.819822e-55 | -8.615850e-47 |
| Msa1013350 | Msa1208950 | 0.815067 | 1.117710e-51 | -8.615850e-47 |
| Msa1013350 | Msa1215870 | 0.855095 | 7.940757e-62 | -8.615850e-47 |
| Msa1013350 | Msa1218820 | 0.800491 | 1.405788e-48 | -8.615850e-47 |
| Msa1013350 | Msa1226520 | 0.840231 | 9.850165e-58 | -8.615850e-47 |
| Msa1013350 | Msa1307630 | 0.837762 | 4.291726e-57 | -8.615850e-47 |
| Msa1013350 | Msa1343170 | 0.818286 | 2.121626e-52 | -8.615850e-47 |
| Msa1013350 | Msa1343180 | 0.810404 | 1.172564e-50 | -8.615850e-47 |
| Msa1013350 | Msa1366150 | 0.806528 | 7.875130e-50 | -8.615850e-47 |
| Msa1013350 | Msa1368750 | 0.810532 | 1.100280e-50 | -8.615850e-47 |
| Msa1013350 | Msa1374790 | 0.810372 | 1.190933e-50 | -8.615850e-47 |
| Msa1013350 | Msa1397270 | 0.802069 | 6.682875e-49 | -8.615850e-47 |
| Msa1013350 | Msa1397400 | 0.804108 | 2.530729e-49 | -8.615850e-47 |
| Msa1013350 | Msa1420950 | 0.812338 | 4.457666e-51 | -8.615850e-47 |
| Msa1013350 | Msa1451820 | 0.809555 | 1.785776e-50 | -8.615850e-47 |
| Msa0260510 | Msa1013350 | 0.805810 | 1.115439e-49 | -8.615850e-47 |
| Msa0262250 | Msa1013350 | 0.814296 | 1.656278e-51 | -8.615850e-47 |
| Msa0269210 | Msa1013350 | 0.826472 | 2.662869e-54 | -8.615850e-47 |
| Msa0271880 | Msa1013350 | 0.816351 | 5.784932e-52 | -8.615850e-47 |
| Msa0298470 | Msa1013350 | 0.804613 | 1.985692e-49 | -8.615850e-47 |
| Msa0310850 | Msa1013350 | 0.815461 | 9.134575e-52 | -8.615850e-47 |
| Msa0330380 | Msa1013350 | 0.808104 | 3.648770e-50 | -8.615850e-47 |
| Msa0340500 | Msa1013350 | 0.802011 | 6.867627e-49 | -8.615850e-47 |
| Msa0343010 | Msa1013350 | 0.801527 | 8.635484e-49 | -8.615850e-47 |
| Msa0361910 | Msa1013350 | 0.814610 | 1.411103e-51 | -8.615850e-47 |
| Msa0567170 | Msa1013350 | 0.849902 | 2.399635e-60 | -8.615850e-47 |
| Msa0573850 | Msa1013350 | 0.825687 | 4.091451e-54 | -8.615850e-47 |
| Msa0580370 | Msa1013350 | 0.811288 | 7.547336e-51 | -8.615850e-47 |
| Msa0581550 | Msa1013350 | 0.819124 | 1.369282e-52 | -8.615850e-47 |
| Msa0590200 | Msa1013350 | 0.815592 | 8.543356e-52 | -8.615850e-47 |
| Msa0863620 | Msa1013350 | 0.803021 | 4.253162e-49 | -8.615850e-47 |
| Msa0878280 | Msa1013350 | 0.826095 | 3.273585e-54 | -8.615850e-47 |
| Msa0888790 | Msa1013350 | 0.804318 | 2.287741e-49 | -8.615850e-47 |
| Msa0915520 | Msa1013350 | 0.817492 | 3.207277e-52 | -8.615850e-47 |
| Msa0966320 | Msa1013350 | 0.806531 | 7.864198e-50 | -8.615850e-47 |
| Msa0966480 | Msa1013350 | 0.815957 | 7.082580e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013350 | MtrunA17_Chr7g0225281 | 99.394 | 330 | 2 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Msa1013350 | MtrunA17_Chr7g0225401 | 99.394 | 330 | 2 | 0 | 1 | 330 | 1 | 330 | 0.0 | 680 |
| Msa1013350 | MtrunA17_Chr1g0171221 | 97.879 | 330 | 7 | 0 | 1 | 330 | 1 | 330 | 0.0 | 672 |
| Msa1013350 | MtrunA17_Chr8g0362581 | 93.030 | 330 | 18 | 1 | 1 | 330 | 1 | 325 | 0.0 | 637 |
| Msa1013350 | MtrunA17_Chr4g0065771 | 76.923 | 325 | 74 | 1 | 6 | 330 | 18 | 341 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1013350 | AT3G27060.1 | 83.434 | 332 | 53 | 2 | 1 | 330 | 1 | 332 | 0.0 | 558 |
| Msa1013350 | AT3G23580.1 | 76.308 | 325 | 76 | 1 | 6 | 330 | 18 | 341 | 0.0 | 518 |
Find 62 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACATTTCCCAGATTT+TGG | 0.151339 | 7_1:+19798537 | None:intergenic |
| AGGCACGTGCTTCAGAGATT+TGG | 0.317398 | 7_1:+19798341 | None:intergenic |
| CAATCCAATACCCCAAAATC+TGG | 0.320986 | 7_1:-19798549 | Msa1013350:CDS |
| GTTGCATTTGCTTGTGTAGA+AGG | 0.323501 | 7_1:-19798127 | Msa1013350:CDS |
| TGCAATCTGGAAACCGTAAA+AGG | 0.337326 | 7_1:+19798321 | None:intergenic |
| ATTTCTTTGAGAAGCGCGTT+GGG | 0.337568 | 7_1:-19797724 | Msa1013350:CDS |
| TTTGTTGCTGATAGATTATT+GGG | 0.346573 | 7_1:-19797827 | Msa1013350:CDS |
| GTTTGTTGCTGATAGATTAT+TGG | 0.356307 | 7_1:-19797828 | Msa1013350:CDS |
| AGGCTGATTGGGCGATGAAA+TGG | 0.358474 | 7_1:-19798183 | Msa1013350:CDS |
| GGTGCGAGAAGTGGTTCTTC+TGG | 0.368731 | 7_1:+19798598 | None:intergenic |
| CGGAATTGTCCTCGAAAATC+TGG | 0.378084 | 7_1:-19798386 | Msa1013350:CDS |
| ATGTTCAGAATCCGTTTGAT+TGG | 0.390491 | 7_1:-19797778 | Msa1013350:CDS |
| GCGCTTCCTTGCGCGTTGGT+TGG | 0.401864 | 7_1:-19797884 | Msa1013350:CDS |
| GAAAATCGCGCAGAAGCTTC+CGG | 0.409737 | 7_1:+19798093 | None:intergenic |
| ATACAGAATCGGTCTGGGTT+TGG | 0.441730 | 7_1:+19798577 | None:intergenic |
| TCAGAATCCGTTTGATTGGA+TGG | 0.443597 | 7_1:-19797774 | Msa1013350:CDS |
| TCCGTCTGAGGCGGCGAAGA+AGG | 0.447235 | 7_1:+19798405 | None:intergenic |
| GCCTTCTTCGCCGCCTCAGA+CGG | 0.453049 | 7_1:-19798406 | Msa1013350:CDS |
| CTGTTATGAATAGCTTGAAT+GGG | 0.453833 | 7_1:-19797685 | Msa1013350:CDS |
| TACAATTTCCTTCACACGCT+CGG | 0.455423 | 7_1:+19797946 | None:intergenic |
| TCTGTTATGAATAGCTTGAA+TGG | 0.458759 | 7_1:-19797686 | Msa1013350:CDS |
| CGACGCGCTTCCTTGCGCGT+TGG | 0.462960 | 7_1:-19797888 | Msa1013350:CDS |
| GACTTCTTTCATGAATCGTC+CGG | 0.465864 | 7_1:+19798363 | None:intergenic |
| CGAAATAAGCTCGTTTGAGA+AGG | 0.470666 | 7_1:+19798036 | None:intergenic |
| GGCGGTCCAGAATGAGGCTT+CGG | 0.476778 | 7_1:+19798510 | None:intergenic |
| ATGGAATTGATTTCGCTTCA+AGG | 0.479094 | 7_1:-19797755 | Msa1013350:CDS |
| ATCAATTCCATCCAATCAAA+CGG | 0.480364 | 7_1:+19797767 | None:intergenic |
| GCAATGCAGTTGAAATTGAA+AGG | 0.492366 | 7_1:-19797922 | Msa1013350:CDS |
| GGAGGAAAGATCGACTTCTT+CGG | 0.499480 | 7_1:+19798489 | None:intergenic |
| GGGAACATACAGAATCGGTC+TGG | 0.504168 | 7_1:+19798571 | None:intergenic |
| AGTGGTTCTTCTGGAAAAGC+AGG | 0.510370 | 7_1:+19798607 | None:intergenic |
| GGGTGAACTTGGTTGTGAAA+AGG | 0.510958 | 7_1:-19797807 | Msa1013350:CDS |
| GATAGATTATTGGGTGAACT+TGG | 0.513434 | 7_1:-19797818 | Msa1013350:CDS |
| GTTGTTCCAGTGCTTGAGAT+CGG | 0.515525 | 7_1:+19798468 | None:intergenic |
| GGAACATACAGAATCGGTCT+GGG | 0.519029 | 7_1:+19798572 | None:intergenic |
| AATTTCTTTGAGAAGCGCGT+TGG | 0.523856 | 7_1:-19797725 | Msa1013350:CDS |
| TTCTTCGGCGGTCCAGAATG+AGG | 0.524296 | 7_1:+19798504 | None:intergenic |
| TTCGAGGACAATTCCGTCTG+AGG | 0.536756 | 7_1:+19798393 | None:intergenic |
| TTTCCTCCGATCTCAAGCAC+TGG | 0.537267 | 7_1:-19798474 | Msa1013350:CDS |
| TCTGGGTTTGGTGCGAGAAG+TGG | 0.546005 | 7_1:+19798589 | None:intergenic |
| CAATGCAGTTGAAATTGAAA+GGG | 0.547072 | 7_1:-19797921 | Msa1013350:CDS |
| TGCGCGTTGGTTGGAATGAA+CGG | 0.550794 | 7_1:-19797875 | Msa1013350:CDS |
| TGGAATTGATTTCGCTTCAA+GGG | 0.551257 | 7_1:-19797754 | Msa1013350:CDS |
| CGAGGACGTGTGAGATGAAG+TGG | 0.551534 | 7_1:+19798428 | None:intergenic |
| GAGCTTATTTCGCGTGACGA+AGG | 0.555351 | 7_1:-19798025 | Msa1013350:CDS |
| GGATTGGGAACATACAGAAT+CGG | 0.556653 | 7_1:+19798566 | None:intergenic |
| AATCCAATACCCCAAAATCT+GGG | 0.556684 | 7_1:-19798548 | Msa1013350:CDS |
| CACTGGAACAACCTCACAGA+CGG | 0.586656 | 7_1:-19798457 | Msa1013350:CDS |
| TCGTTTGAGAAGGTTAATCC+CGG | 0.587906 | 7_1:+19798046 | None:intergenic |
| TTCATTCCAACCAACGCGCA+AGG | 0.588514 | 7_1:+19797878 | None:intergenic |
| AATCGCTTATATATGTCTCA+AGG | 0.594122 | 7_1:+19798263 | None:intergenic |
| ACTAACTTCCGAGCGTGTGA+AGG | 0.594762 | 7_1:-19797954 | Msa1013350:CDS |
| TTTCTTTGAGAAGCGCGTTG+GGG | 0.598671 | 7_1:-19797723 | Msa1013350:CDS |
| GAGGACAATTCCGTCTGAGG+CGG | 0.603534 | 7_1:+19798396 | None:intergenic |
| ATGAATAGCTTGAATGGGAA+TGG | 0.603815 | 7_1:-19797680 | Msa1013350:CDS |
| CTGAGGCGGCGAAGAAGGCG+AGG | 0.610767 | 7_1:+19798410 | None:intergenic |
| GTTCCAGTGCTTGAGATCGG+AGG | 0.623496 | 7_1:+19798471 | None:intergenic |
| ATTGTCCTCGAAAATCTGGC+CGG | 0.642039 | 7_1:-19798382 | Msa1013350:CDS |
| GGAAAGATCGACTTCTTCGG+CGG | 0.687608 | 7_1:+19798492 | None:intergenic |
| AGTGGCGTTCGCCGTCTGTG+AGG | 0.694180 | 7_1:+19798446 | None:intergenic |
| GAAGAGAATACATCTCAGAG+TGG | 0.694344 | 7_1:+19798287 | None:intergenic |
| GCGTTGGTTGGAATGAACGG+TGG | 0.708152 | 7_1:-19797872 | Msa1013350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTTGTTGCTGATAGATTATT+GGG | - | chr7_1:19798423-19798442 | Msa1013350:CDS | 25.0% |
| ! | TTTGTTGCTGATAGATTATT+GGG | - | chr7_1:19798423-19798442 | Msa1013350:CDS | 25.0% |
| ! | TTGTACATTTCCCAGATTTT+GGG | + | chr7_1:19797715-19797734 | None:intergenic | 30.0% |
| ! | TTTGTACATTTCCCAGATTT+TGG | + | chr7_1:19797716-19797735 | None:intergenic | 30.0% |
| ! | GGATATTTTCAATTGCAATC+TGG | + | chr7_1:19797945-19797964 | None:intergenic | 30.0% |
| AATCGCTTATATATGTCTCA+AGG | + | chr7_1:19797990-19798009 | None:intergenic | 30.0% | |
| AATTCCATGTATCGCAAAAA+AGG | - | chr7_1:19798047-19798066 | Msa1013350:CDS | 30.0% | |
| !!! | ATTTTCTGGTTGAAAAAACG+AGG | - | chr7_1:19798174-19798193 | Msa1013350:CDS | 30.0% |
| CAATGCAGTTGAAATTGAAA+GGG | - | chr7_1:19798329-19798348 | Msa1013350:CDS | 30.0% | |
| ! | GTTTGTTGCTGATAGATTAT+TGG | - | chr7_1:19798422-19798441 | Msa1013350:CDS | 30.0% |
| ATCAATTCCATCCAATCAAA+CGG | + | chr7_1:19798486-19798505 | None:intergenic | 30.0% | |
| TCTGTTATGAATAGCTTGAA+TGG | - | chr7_1:19798564-19798583 | Msa1013350:CDS | 30.0% | |
| CTGTTATGAATAGCTTGAAT+GGG | - | chr7_1:19798565-19798584 | Msa1013350:CDS | 30.0% | |
| !!! | TGCTGATTTTTGCTTTAGTT+TGG | - | chr7_1:19798596-19798615 | Msa1013350:CDS | 30.0% |
| ! | TTGTACATTTCCCAGATTTT+GGG | + | chr7_1:19797715-19797734 | None:intergenic | 30.0% |
| ! | TTTGTACATTTCCCAGATTT+TGG | + | chr7_1:19797716-19797735 | None:intergenic | 30.0% |
| ! | GGATATTTTCAATTGCAATC+TGG | + | chr7_1:19797945-19797964 | None:intergenic | 30.0% |
| AATCGCTTATATATGTCTCA+AGG | + | chr7_1:19797990-19798009 | None:intergenic | 30.0% | |
| AATTCCATGTATCGCAAAAA+AGG | - | chr7_1:19798047-19798066 | Msa1013350:CDS | 30.0% | |
| !!! | ATTTTCTGGTTGAAAAAACG+AGG | - | chr7_1:19798174-19798193 | Msa1013350:CDS | 30.0% |
| CAATGCAGTTGAAATTGAAA+GGG | - | chr7_1:19798329-19798348 | Msa1013350:CDS | 30.0% | |
| ! | GTTTGTTGCTGATAGATTAT+TGG | - | chr7_1:19798422-19798441 | Msa1013350:CDS | 30.0% |
| ATCAATTCCATCCAATCAAA+CGG | + | chr7_1:19798486-19798505 | None:intergenic | 30.0% | |
| TCTGTTATGAATAGCTTGAA+TGG | - | chr7_1:19798564-19798583 | Msa1013350:CDS | 30.0% | |
| CTGTTATGAATAGCTTGAAT+GGG | - | chr7_1:19798565-19798584 | Msa1013350:CDS | 30.0% | |
| !!! | TGCTGATTTTTGCTTTAGTT+TGG | - | chr7_1:19798596-19798615 | Msa1013350:CDS | 30.0% |
| !!! | AGATTTTGGGGTATTGGATT+GGG | + | chr7_1:19797702-19797721 | None:intergenic | 35.0% |
| AATCCAATACCCCAAAATCT+GGG | - | chr7_1:19797702-19797721 | Msa1013350:CDS | 35.0% | |
| ! | TGTACATTTCCCAGATTTTG+GGG | + | chr7_1:19797714-19797733 | None:intergenic | 35.0% |
| TATCGCAAAAAAGGCTGATT+GGG | - | chr7_1:19798056-19798075 | Msa1013350:CDS | 35.0% | |
| ! | GTAGAAGGAATTTTCTTCTC+CGG | - | chr7_1:19798138-19798157 | Msa1013350:CDS | 35.0% |
| GAAAAAACGAGGTTTAATGC+CGG | - | chr7_1:19798185-19798204 | Msa1013350:CDS | 35.0% | |
| AAAAAACGAGGTTTAATGCC+GGG | - | chr7_1:19798186-19798205 | Msa1013350:CDS | 35.0% | |
| GCAATGCAGTTGAAATTGAA+AGG | - | chr7_1:19798328-19798347 | Msa1013350:CDS | 35.0% | |
| GATAGATTATTGGGTGAACT+TGG | - | chr7_1:19798432-19798451 | Msa1013350:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | - | chr7_1:19798472-19798491 | Msa1013350:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+AGG | - | chr7_1:19798495-19798514 | Msa1013350:CDS | 35.0% |
| ! | TGGAATTGATTTCGCTTCAA+GGG | - | chr7_1:19798496-19798515 | Msa1013350:CDS | 35.0% |
| ATGAATAGCTTGAATGGGAA+TGG | - | chr7_1:19798570-19798589 | Msa1013350:CDS | 35.0% | |
| !!! | AGATTTTGGGGTATTGGATT+GGG | + | chr7_1:19797702-19797721 | None:intergenic | 35.0% |
| AATCCAATACCCCAAAATCT+GGG | - | chr7_1:19797702-19797721 | Msa1013350:CDS | 35.0% | |
| ! | TGTACATTTCCCAGATTTTG+GGG | + | chr7_1:19797714-19797733 | None:intergenic | 35.0% |
| TATCGCAAAAAAGGCTGATT+GGG | - | chr7_1:19798056-19798075 | Msa1013350:CDS | 35.0% | |
| ! | GTAGAAGGAATTTTCTTCTC+CGG | - | chr7_1:19798138-19798157 | Msa1013350:CDS | 35.0% |
| GAAAAAACGAGGTTTAATGC+CGG | - | chr7_1:19798185-19798204 | Msa1013350:CDS | 35.0% | |
| AAAAAACGAGGTTTAATGCC+GGG | - | chr7_1:19798186-19798205 | Msa1013350:CDS | 35.0% | |
| GCAATGCAGTTGAAATTGAA+AGG | - | chr7_1:19798328-19798347 | Msa1013350:CDS | 35.0% | |
| GATAGATTATTGGGTGAACT+TGG | - | chr7_1:19798432-19798451 | Msa1013350:CDS | 35.0% | |
| ATGTTCAGAATCCGTTTGAT+TGG | - | chr7_1:19798472-19798491 | Msa1013350:CDS | 35.0% | |
| ! | ATGGAATTGATTTCGCTTCA+AGG | - | chr7_1:19798495-19798514 | Msa1013350:CDS | 35.0% |
| ! | TGGAATTGATTTCGCTTCAA+GGG | - | chr7_1:19798496-19798515 | Msa1013350:CDS | 35.0% |
| ATGAATAGCTTGAATGGGAA+TGG | - | chr7_1:19798570-19798589 | Msa1013350:CDS | 35.0% | |
| GGATTGGGAACATACAGAAT+CGG | + | chr7_1:19797687-19797706 | None:intergenic | 40.0% | |
| !!! | CAGATTTTGGGGTATTGGAT+TGG | + | chr7_1:19797703-19797722 | None:intergenic | 40.0% |
| CAATCCAATACCCCAAAATC+TGG | - | chr7_1:19797701-19797720 | Msa1013350:CDS | 40.0% | |
| !!! | TTTCCCAGATTTTGGGGTAT+TGG | + | chr7_1:19797708-19797727 | None:intergenic | 40.0% |
| GACTTCTTTCATGAATCGTC+CGG | + | chr7_1:19797890-19797909 | None:intergenic | 40.0% | |
| TGCAATCTGGAAACCGTAAA+AGG | + | chr7_1:19797932-19797951 | None:intergenic | 40.0% | |
| GAAGAGAATACATCTCAGAG+TGG | + | chr7_1:19797966-19797985 | None:intergenic | 40.0% | |
| !!! | TCAGCCTTTTTTGCGATACA+TGG | + | chr7_1:19798054-19798073 | None:intergenic | 40.0% |
| GTATCGCAAAAAAGGCTGAT+TGG | - | chr7_1:19798055-19798074 | Msa1013350:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTAGA+AGG | - | chr7_1:19798123-19798142 | Msa1013350:CDS | 40.0% | |
| TCGTTTGAGAAGGTTAATCC+CGG | + | chr7_1:19798207-19798226 | None:intergenic | 40.0% | |
| CGAAATAAGCTCGTTTGAGA+AGG | + | chr7_1:19798217-19798236 | None:intergenic | 40.0% | |
| TACAATTTCCTTCACACGCT+CGG | + | chr7_1:19798307-19798326 | None:intergenic | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | - | chr7_1:19798476-19798495 | Msa1013350:CDS | 40.0% | |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | - | chr7_1:19798525-19798544 | Msa1013350:CDS | 40.0% |
| ! | ATTTCTTTGAGAAGCGCGTT+GGG | - | chr7_1:19798526-19798545 | Msa1013350:CDS | 40.0% |
| GGATTGGGAACATACAGAAT+CGG | + | chr7_1:19797687-19797706 | None:intergenic | 40.0% | |
| !!! | CAGATTTTGGGGTATTGGAT+TGG | + | chr7_1:19797703-19797722 | None:intergenic | 40.0% |
| CAATCCAATACCCCAAAATC+TGG | - | chr7_1:19797701-19797720 | Msa1013350:CDS | 40.0% | |
| !!! | TTTCCCAGATTTTGGGGTAT+TGG | + | chr7_1:19797708-19797727 | None:intergenic | 40.0% |
| GACTTCTTTCATGAATCGTC+CGG | + | chr7_1:19797890-19797909 | None:intergenic | 40.0% | |
| TGCAATCTGGAAACCGTAAA+AGG | + | chr7_1:19797932-19797951 | None:intergenic | 40.0% | |
| GAAGAGAATACATCTCAGAG+TGG | + | chr7_1:19797966-19797985 | None:intergenic | 40.0% | |
| !!! | TCAGCCTTTTTTGCGATACA+TGG | + | chr7_1:19798054-19798073 | None:intergenic | 40.0% |
| GTATCGCAAAAAAGGCTGAT+TGG | - | chr7_1:19798055-19798074 | Msa1013350:CDS | 40.0% | |
| GTTGCATTTGCTTGTGTAGA+AGG | - | chr7_1:19798123-19798142 | Msa1013350:CDS | 40.0% | |
| TCGTTTGAGAAGGTTAATCC+CGG | + | chr7_1:19798207-19798226 | None:intergenic | 40.0% | |
| CGAAATAAGCTCGTTTGAGA+AGG | + | chr7_1:19798217-19798236 | None:intergenic | 40.0% | |
| TACAATTTCCTTCACACGCT+CGG | + | chr7_1:19798307-19798326 | None:intergenic | 40.0% | |
| TCAGAATCCGTTTGATTGGA+TGG | - | chr7_1:19798476-19798495 | Msa1013350:CDS | 40.0% | |
| ! | AATTTCTTTGAGAAGCGCGT+TGG | - | chr7_1:19798525-19798544 | Msa1013350:CDS | 40.0% |
| ! | ATTTCTTTGAGAAGCGCGTT+GGG | - | chr7_1:19798526-19798545 | Msa1013350:CDS | 40.0% |
| ! | AGTGGTTCTTCTGGAAAAGC+AGG | + | chr7_1:19797646-19797665 | None:intergenic | 45.0% |
| ATACAGAATCGGTCTGGGTT+TGG | + | chr7_1:19797676-19797695 | None:intergenic | 45.0% | |
| GGAACATACAGAATCGGTCT+GGG | + | chr7_1:19797681-19797700 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | - | chr7_1:19797734-19797753 | Msa1013350:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | + | chr7_1:19797764-19797783 | None:intergenic | 45.0% |
| GTTGTTCCAGTGCTTGAGAT+CGG | + | chr7_1:19797785-19797804 | None:intergenic | 45.0% | |
| CGGAATTGTCCTCGAAAATC+TGG | - | chr7_1:19797864-19797883 | Msa1013350:CDS | 45.0% | |
| ATTGTCCTCGAAAATCTGGC+CGG | - | chr7_1:19797868-19797887 | Msa1013350:CDS | 45.0% | |
| !! | TCTGAAGCACGTGCCTTTTA+CGG | - | chr7_1:19797916-19797935 | Msa1013350:CDS | 45.0% |
| GGGTGAACTTGGTTGTGAAA+AGG | - | chr7_1:19798443-19798462 | Msa1013350:CDS | 45.0% | |
| ! | TTTCTTTGAGAAGCGCGTTG+GGG | - | chr7_1:19798527-19798546 | Msa1013350:CDS | 45.0% |
| ! | AGTGGTTCTTCTGGAAAAGC+AGG | + | chr7_1:19797646-19797665 | None:intergenic | 45.0% |
| ATACAGAATCGGTCTGGGTT+TGG | + | chr7_1:19797676-19797695 | None:intergenic | 45.0% | |
| GGAACATACAGAATCGGTCT+GGG | + | chr7_1:19797681-19797700 | None:intergenic | 45.0% | |
| AAAAAGCCGAAGCCTCATTC+TGG | - | chr7_1:19797734-19797753 | Msa1013350:CDS | 45.0% | |
| ! | GGAGGAAAGATCGACTTCTT+CGG | + | chr7_1:19797764-19797783 | None:intergenic | 45.0% |
| GTTGTTCCAGTGCTTGAGAT+CGG | + | chr7_1:19797785-19797804 | None:intergenic | 45.0% | |
| CGGAATTGTCCTCGAAAATC+TGG | - | chr7_1:19797864-19797883 | Msa1013350:CDS | 45.0% | |
| ATTGTCCTCGAAAATCTGGC+CGG | - | chr7_1:19797868-19797887 | Msa1013350:CDS | 45.0% | |
| !! | TCTGAAGCACGTGCCTTTTA+CGG | - | chr7_1:19797916-19797935 | Msa1013350:CDS | 45.0% |
| GGGTGAACTTGGTTGTGAAA+AGG | - | chr7_1:19798443-19798462 | Msa1013350:CDS | 45.0% | |
| ! | TTTCTTTGAGAAGCGCGTTG+GGG | - | chr7_1:19798527-19798546 | Msa1013350:CDS | 45.0% |
| GGGAACATACAGAATCGGTC+TGG | + | chr7_1:19797682-19797701 | None:intergenic | 50.0% | |
| ! | GGAAAGATCGACTTCTTCGG+CGG | + | chr7_1:19797761-19797780 | None:intergenic | 50.0% |
| TTTCCTCCGATCTCAAGCAC+TGG | - | chr7_1:19797776-19797795 | Msa1013350:CDS | 50.0% | |
| CACTGGAACAACCTCACAGA+CGG | - | chr7_1:19797793-19797812 | Msa1013350:CDS | 50.0% | |
| TTCGAGGACAATTCCGTCTG+AGG | + | chr7_1:19797860-19797879 | None:intergenic | 50.0% | |
| AGGCACGTGCTTCAGAGATT+TGG | + | chr7_1:19797912-19797931 | None:intergenic | 50.0% | |
| AGGCTGATTGGGCGATGAAA+TGG | - | chr7_1:19798067-19798086 | Msa1013350:CDS | 50.0% | |
| GAAAATCGCGCAGAAGCTTC+CGG | + | chr7_1:19798160-19798179 | None:intergenic | 50.0% | |
| ! | GAAGCTTCTGCGCGATTTTC+TGG | - | chr7_1:19798160-19798179 | Msa1013350:CDS | 50.0% |
| GAGCTTATTTCGCGTGACGA+AGG | - | chr7_1:19798225-19798244 | Msa1013350:CDS | 50.0% | |
| ACTAACTTCCGAGCGTGTGA+AGG | - | chr7_1:19798296-19798315 | Msa1013350:CDS | 50.0% | |
| TTCATTCCAACCAACGCGCA+AGG | + | chr7_1:19798375-19798394 | None:intergenic | 50.0% | |
| !! | TGCGCGTTGGTTGGAATGAA+CGG | - | chr7_1:19798375-19798394 | Msa1013350:CDS | 50.0% |
| GGGAACATACAGAATCGGTC+TGG | + | chr7_1:19797682-19797701 | None:intergenic | 50.0% | |
| ! | GGAAAGATCGACTTCTTCGG+CGG | + | chr7_1:19797761-19797780 | None:intergenic | 50.0% |
| TTTCCTCCGATCTCAAGCAC+TGG | - | chr7_1:19797776-19797795 | Msa1013350:CDS | 50.0% | |
| CACTGGAACAACCTCACAGA+CGG | - | chr7_1:19797793-19797812 | Msa1013350:CDS | 50.0% | |
| TTCGAGGACAATTCCGTCTG+AGG | + | chr7_1:19797860-19797879 | None:intergenic | 50.0% | |
| AGGCACGTGCTTCAGAGATT+TGG | + | chr7_1:19797912-19797931 | None:intergenic | 50.0% | |
| AGGCTGATTGGGCGATGAAA+TGG | - | chr7_1:19798067-19798086 | Msa1013350:CDS | 50.0% | |
| GAAAATCGCGCAGAAGCTTC+CGG | + | chr7_1:19798160-19798179 | None:intergenic | 50.0% | |
| ! | GAAGCTTCTGCGCGATTTTC+TGG | - | chr7_1:19798160-19798179 | Msa1013350:CDS | 50.0% |
| GAGCTTATTTCGCGTGACGA+AGG | - | chr7_1:19798225-19798244 | Msa1013350:CDS | 50.0% | |
| ACTAACTTCCGAGCGTGTGA+AGG | - | chr7_1:19798296-19798315 | Msa1013350:CDS | 50.0% | |
| TTCATTCCAACCAACGCGCA+AGG | + | chr7_1:19798375-19798394 | None:intergenic | 50.0% | |
| !! | TGCGCGTTGGTTGGAATGAA+CGG | - | chr7_1:19798375-19798394 | Msa1013350:CDS | 50.0% |
| GGTGCGAGAAGTGGTTCTTC+TGG | + | chr7_1:19797655-19797674 | None:intergenic | 55.0% | |
| !! | TCTGGGTTTGGTGCGAGAAG+TGG | + | chr7_1:19797664-19797683 | None:intergenic | 55.0% |
| TTCTTCGGCGGTCCAGAATG+AGG | + | chr7_1:19797749-19797768 | None:intergenic | 55.0% | |
| GTTCCAGTGCTTGAGATCGG+AGG | + | chr7_1:19797782-19797801 | None:intergenic | 55.0% | |
| CGAGGACGTGTGAGATGAAG+TGG | + | chr7_1:19797825-19797844 | None:intergenic | 55.0% | |
| GAGGACAATTCCGTCTGAGG+CGG | + | chr7_1:19797857-19797876 | None:intergenic | 55.0% | |
| ! | ATCGTCCGGCCAGATTTTCG+AGG | + | chr7_1:19797876-19797895 | None:intergenic | 55.0% |
| !! | GCGTTGGTTGGAATGAACGG+TGG | - | chr7_1:19798378-19798397 | Msa1013350:CDS | 55.0% |
| GGTGCGAGAAGTGGTTCTTC+TGG | + | chr7_1:19797655-19797674 | None:intergenic | 55.0% | |
| !! | TCTGGGTTTGGTGCGAGAAG+TGG | + | chr7_1:19797664-19797683 | None:intergenic | 55.0% |
| TTCTTCGGCGGTCCAGAATG+AGG | + | chr7_1:19797749-19797768 | None:intergenic | 55.0% | |
| GTTCCAGTGCTTGAGATCGG+AGG | + | chr7_1:19797782-19797801 | None:intergenic | 55.0% | |
| CGAGGACGTGTGAGATGAAG+TGG | + | chr7_1:19797825-19797844 | None:intergenic | 55.0% | |
| GAGGACAATTCCGTCTGAGG+CGG | + | chr7_1:19797857-19797876 | None:intergenic | 55.0% | |
| ! | ATCGTCCGGCCAGATTTTCG+AGG | + | chr7_1:19797876-19797895 | None:intergenic | 55.0% |
| !! | GCGTTGGTTGGAATGAACGG+TGG | - | chr7_1:19798378-19798397 | Msa1013350:CDS | 55.0% |
| GGCGGTCCAGAATGAGGCTT+CGG | + | chr7_1:19797743-19797762 | None:intergenic | 60.0% | |
| GGCGGTCCAGAATGAGGCTT+CGG | + | chr7_1:19797743-19797762 | None:intergenic | 60.0% | |
| AGTGGCGTTCGCCGTCTGTG+AGG | + | chr7_1:19797807-19797826 | None:intergenic | 65.0% | |
| GCCTTCTTCGCCGCCTCAGA+CGG | - | chr7_1:19797844-19797863 | Msa1013350:CDS | 65.0% | |
| ! | TCCGTCTGAGGCGGCGAAGA+AGG | + | chr7_1:19797848-19797867 | None:intergenic | 65.0% |
| ! | GCGCTTCCTTGCGCGTTGGT+TGG | - | chr7_1:19798366-19798385 | Msa1013350:CDS | 65.0% |
| AGTGGCGTTCGCCGTCTGTG+AGG | + | chr7_1:19797807-19797826 | None:intergenic | 65.0% | |
| GCCTTCTTCGCCGCCTCAGA+CGG | - | chr7_1:19797844-19797863 | Msa1013350:CDS | 65.0% | |
| ! | TCCGTCTGAGGCGGCGAAGA+AGG | + | chr7_1:19797848-19797867 | None:intergenic | 65.0% |
| ! | GCGCTTCCTTGCGCGTTGGT+TGG | - | chr7_1:19798366-19798385 | Msa1013350:CDS | 65.0% |
| CTGAGGCGGCGAAGAAGGCG+AGG | + | chr7_1:19797843-19797862 | None:intergenic | 70.0% | |
| CGACGCGCTTCCTTGCGCGT+TGG | - | chr7_1:19798362-19798381 | Msa1013350:CDS | 70.0% | |
| CTGAGGCGGCGAAGAAGGCG+AGG | + | chr7_1:19797843-19797862 | None:intergenic | 70.0% | |
| CGACGCGCTTCCTTGCGCGT+TGG | - | chr7_1:19798362-19798381 | Msa1013350:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 19797640 | 19798632 | 19797640 | ID=Msa1013350;Name=Msa1013350 |
| chr7_1 | mRNA | 19797640 | 19798632 | 19797640 | ID=Msa1013350-mRNA-1;Parent=Msa1013350;Name=Msa1013350-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|330 |
| chr7_1 | exon | 19797640 | 19798632 | 19797640 | ID=Msa1013350-mRNA-1:exon:4808;Parent=Msa1013350-mRNA-1 |
| chr7_1 | CDS | 19797640 | 19798632 | 19797640 | ID=Msa1013350-mRNA-1:cds;Parent=Msa1013350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
