Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289780 | XP_013464135.1 | 87.903 | 124 | 14 | 1 | 1 | 124 | 1 | 123 | 9.40e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289780 | A0A072V9U4 | 87.903 | 124 | 14 | 1 | 1 | 124 | 1 | 123 | 4.49e-68 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018220 | Msa0289780 | 0.821885 | 3.182296e-53 | -8.615850e-47 |
| Msa0030730 | Msa0289780 | 0.830370 | 3.050933e-55 | -8.615850e-47 |
| Msa0031720 | Msa0289780 | 0.809696 | 1.665426e-50 | -8.615850e-47 |
| Msa0032120 | Msa0289780 | 0.804125 | 2.509383e-49 | -8.615850e-47 |
| Msa0043680 | Msa0289780 | 0.816070 | 6.684944e-52 | -8.615850e-47 |
| Msa0044810 | Msa0289780 | 0.818031 | 2.423296e-52 | -8.615850e-47 |
| Msa0073820 | Msa0289780 | 0.855156 | 7.619431e-62 | -8.615850e-47 |
| Msa0078090 | Msa0289780 | 0.815632 | 8.367756e-52 | -8.615850e-47 |
| Msa0084680 | Msa0289780 | 0.812378 | 4.369305e-51 | -8.615850e-47 |
| Msa0091550 | Msa0289780 | 0.833069 | 6.589515e-56 | -8.615850e-47 |
| Msa0092660 | Msa0289780 | 0.850222 | 1.951804e-60 | -8.615850e-47 |
| Msa0092680 | Msa0289780 | 0.822919 | 1.831149e-53 | -8.615850e-47 |
| Msa0092730 | Msa0289780 | 0.849377 | 3.363397e-60 | -8.615850e-47 |
| Msa0097050 | Msa0289780 | 0.817135 | 3.857977e-52 | -8.615850e-47 |
| Msa0135980 | Msa0289780 | 0.834412 | 3.042113e-56 | -8.615850e-47 |
| Msa0137600 | Msa0289780 | 0.842487 | 2.508970e-58 | -8.615850e-47 |
| Msa0139900 | Msa0289780 | 0.824857 | 6.429436e-54 | -8.615850e-47 |
| Msa0141430 | Msa0289780 | 0.803859 | 2.850673e-49 | -8.615850e-47 |
| Msa0141830 | Msa0289780 | 0.803742 | 3.014894e-49 | -8.615850e-47 |
| Msa0150210 | Msa0289780 | 0.805549 | 1.265347e-49 | -8.615850e-47 |
| Msa0165680 | Msa0289780 | 0.815780 | 7.757375e-52 | -8.615850e-47 |
| Msa0171780 | Msa0289780 | 0.830247 | 3.270472e-55 | -8.615850e-47 |
| Msa0171930 | Msa0289780 | 0.829966 | 3.829503e-55 | -8.615850e-47 |
| Msa0185700 | Msa0289780 | 0.803922 | 2.766067e-49 | -8.615850e-47 |
| Msa0207000 | Msa0289780 | 0.803311 | 3.703252e-49 | -8.615850e-47 |
| Msa0223390 | Msa0289780 | 0.811285 | 7.556605e-51 | -8.615850e-47 |
| Msa0227020 | Msa0289780 | -0.834350 | 3.153072e-56 | -8.615850e-47 |
| Msa0239660 | Msa0289780 | 0.803589 | 3.243202e-49 | -8.615850e-47 |
| Msa0246690 | Msa0289780 | 0.827234 | 1.750838e-54 | -8.615850e-47 |
| Msa0247310 | Msa0289780 | 0.816447 | 5.503208e-52 | -8.615850e-47 |
| Msa0255990 | Msa0289780 | 0.810796 | 9.647424e-51 | -8.615850e-47 |
| Msa0257130 | Msa0289780 | 0.806697 | 7.254413e-50 | -8.615850e-47 |
| Msa0280140 | Msa0289780 | 0.810750 | 9.870886e-51 | -8.615850e-47 |
| Msa0285740 | Msa0289780 | 0.827145 | 1.838791e-54 | -8.615850e-47 |
| Msa0289780 | Msa0298940 | 0.800318 | 1.524796e-48 | -8.615850e-47 |
| Msa0289780 | Msa0298970 | 0.815148 | 1.072221e-51 | -8.615850e-47 |
| Msa0289780 | Msa0305340 | -0.815485 | 9.023675e-52 | -8.615850e-47 |
| Msa0289780 | Msa0317260 | 0.814234 | 1.709458e-51 | -8.615850e-47 |
| Msa0289780 | Msa0323990 | 0.851093 | 1.110973e-60 | -8.615850e-47 |
| Msa0289780 | Msa0327550 | 0.994668 | 3.563973e-209 | -8.615850e-47 |
| Msa0289780 | Msa0339860 | 0.806504 | 7.966807e-50 | -8.615850e-47 |
| Msa0289780 | Msa0341460 | -0.847017 | 1.508614e-59 | -8.615850e-47 |
| Msa0289780 | Msa0367370 | 0.853663 | 2.059558e-61 | -8.615850e-47 |
| Msa0289780 | Msa0370890 | 0.808445 | 3.087154e-50 | -8.615850e-47 |
| Msa0289780 | Msa0374070 | 0.816923 | 4.305546e-52 | -8.615850e-47 |
| Msa0289780 | Msa0382500 | 0.803747 | 3.007642e-49 | -8.615850e-47 |
| Msa0289780 | Msa0386270 | 0.812850 | 3.445364e-51 | -8.615850e-47 |
| Msa0289780 | Msa0413180 | 0.804978 | 1.665899e-49 | -8.615850e-47 |
| Msa0289780 | Msa0417630 | 0.800400 | 1.466852e-48 | -8.615850e-47 |
| Msa0289780 | Msa0423250 | 0.816601 | 5.083955e-52 | -8.615850e-47 |
| Msa0289780 | Msa0428510 | -0.826682 | 2.372040e-54 | -8.615850e-47 |
| Msa0289780 | Msa0432680 | 0.809437 | 1.892852e-50 | -8.615850e-47 |
| Msa0289780 | Msa0436090 | 0.827653 | 1.388825e-54 | -8.615850e-47 |
| Msa0289780 | Msa0450050 | 0.800460 | 1.426259e-48 | -8.615850e-47 |
| Msa0289780 | Msa0469390 | 0.812454 | 4.204876e-51 | -8.615850e-47 |
| Msa0289780 | Msa0482960 | 0.800103 | 1.685866e-48 | -8.615850e-47 |
| Msa0289780 | Msa0506760 | 0.833554 | 4.988995e-56 | -8.615850e-47 |
| Msa0289780 | Msa0511870 | 0.815327 | 9.786496e-52 | -8.615850e-47 |
| Msa0289780 | Msa0515090 | 0.835575 | 1.548894e-56 | -8.615850e-47 |
| Msa0289780 | Msa0532840 | 0.822879 | 1.870205e-53 | -8.615850e-47 |
| Msa0289780 | Msa0533010 | 0.812715 | 3.687460e-51 | -8.615850e-47 |
| Msa0289780 | Msa0538570 | 0.829398 | 5.263331e-55 | -8.615850e-47 |
| Msa0289780 | Msa0546840 | 0.801435 | 9.018182e-49 | -8.615850e-47 |
| Msa0289780 | Msa0550110 | 0.810714 | 1.004577e-50 | -8.615850e-47 |
| Msa0289780 | Msa0561510 | 0.824157 | 9.396031e-54 | -8.615850e-47 |
| Msa0289780 | Msa0563530 | 0.821165 | 4.666648e-53 | -8.615850e-47 |
| Msa0289780 | Msa0567290 | 0.816577 | 5.147260e-52 | -8.615850e-47 |
| Msa0289780 | Msa0578900 | 0.825143 | 5.505073e-54 | -8.615850e-47 |
| Msa0289780 | Msa0594390 | 0.820218 | 7.704489e-53 | -8.615850e-47 |
| Msa0289780 | Msa0605620 | 0.806390 | 8.421305e-50 | -8.615850e-47 |
| Msa0289780 | Msa0607480 | 0.803269 | 3.778502e-49 | -8.615850e-47 |
| Msa0289780 | Msa0607600 | -0.807111 | 5.928876e-50 | -8.615850e-47 |
| Msa0289780 | Msa0610860 | 0.821973 | 3.035979e-53 | -8.615850e-47 |
| Msa0289780 | Msa0619330 | 0.809222 | 2.105044e-50 | -8.615850e-47 |
| Msa0289780 | Msa0620020 | 0.812428 | 4.260358e-51 | -8.615850e-47 |
| Msa0289780 | Msa0629290 | 0.823982 | 1.033227e-53 | -8.615850e-47 |
| Msa0289780 | Msa0634270 | 0.810769 | 9.774457e-51 | -8.615850e-47 |
| Msa0289780 | Msa0639370 | 0.836776 | 7.672831e-57 | -8.615850e-47 |
| Msa0289780 | Msa0651350 | 0.822455 | 2.347614e-53 | -8.615850e-47 |
| Msa0289780 | Msa0659800 | -0.813228 | 2.846967e-51 | -8.615850e-47 |
| Msa0289780 | Msa0661470 | 0.831350 | 1.754599e-55 | -8.615850e-47 |
| Msa0289780 | Msa0667970 | 0.818260 | 2.150297e-52 | -8.615850e-47 |
| Msa0289780 | Msa0681890 | 0.801842 | 7.440333e-49 | -8.615850e-47 |
| Msa0289780 | Msa0682460 | 0.831665 | 1.467708e-55 | -8.615850e-47 |
| Msa0289780 | Msa0685540 | 0.806238 | 9.062877e-50 | -8.615850e-47 |
| Msa0289780 | Msa0687860 | -0.808973 | 2.380806e-50 | -8.615850e-47 |
| Msa0289780 | Msa0690170 | 0.824176 | 9.299486e-54 | -8.615850e-47 |
| Msa0289780 | Msa0698600 | 0.801712 | 7.912063e-49 | -8.615850e-47 |
| Msa0289780 | Msa0703720 | 0.838362 | 3.008175e-57 | -8.615850e-47 |
| Msa0289780 | Msa0703760 | 0.867838 | 1.018544e-65 | -8.615850e-47 |
| Msa0289780 | Msa0709480 | 0.804139 | 2.492782e-49 | -8.615850e-47 |
| Msa0289780 | Msa0709760 | 0.803309 | 3.706590e-49 | -8.615850e-47 |
| Msa0289780 | Msa0720270 | 0.804577 | 2.021116e-49 | -8.615850e-47 |
| Msa0289780 | Msa0730180 | 0.804006 | 2.657436e-49 | -8.615850e-47 |
| Msa0289780 | Msa0746600 | 0.830324 | 3.131772e-55 | -8.615850e-47 |
| Msa0289780 | Msa0761790 | 0.820804 | 5.650612e-53 | -8.615850e-47 |
| Msa0289780 | Msa0769830 | 0.808518 | 2.977463e-50 | -8.615850e-47 |
| Msa0289780 | Msa0770430 | 0.802824 | 4.671350e-49 | -8.615850e-47 |
| Msa0289780 | Msa0790180 | 0.800329 | 1.516445e-48 | -8.615850e-47 |
| Msa0289780 | Msa0802210 | 0.818827 | 1.599315e-52 | -8.615850e-47 |
| Msa0289780 | Msa0804110 | 0.814843 | 1.253329e-51 | -8.615850e-47 |
| Msa0289780 | Msa0805940 | 0.813124 | 3.000445e-51 | -8.615850e-47 |
| Msa0289780 | Msa0813320 | -0.822723 | 2.033909e-53 | -8.615850e-47 |
| Msa0289780 | Msa0842220 | 0.802228 | 6.198816e-49 | -8.615850e-47 |
| Msa0289780 | Msa0843690 | 0.843508 | 1.341979e-58 | -8.615850e-47 |
| Msa0289780 | Msa0848760 | 0.802515 | 5.409612e-49 | -8.615850e-47 |
| Msa0289780 | Msa0874760 | 0.808758 | 2.646007e-50 | -8.615850e-47 |
| Msa0289780 | Msa0882700 | 0.803477 | 3.421914e-49 | -8.615850e-47 |
| Msa0289780 | Msa0925160 | 0.822781 | 1.971220e-53 | -8.615850e-47 |
| Msa0289780 | Msa0930330 | 0.809479 | 1.853977e-50 | -8.615850e-47 |
| Msa0289780 | Msa0931480 | 0.828798 | 7.358532e-55 | -8.615850e-47 |
| Msa0289780 | Msa0955260 | 0.822967 | 1.783797e-53 | -8.615850e-47 |
| Msa0289780 | Msa0972730 | 0.811083 | 8.358691e-51 | -8.615850e-47 |
| Msa0289780 | Msa0990520 | 0.804569 | 2.028430e-49 | -8.615850e-47 |
| Msa0289780 | Msa1004500 | 0.817427 | 3.315929e-52 | -8.615850e-47 |
| Msa0289780 | Msa1004520 | 0.805553 | 1.263025e-49 | -8.615850e-47 |
| Msa0289780 | Msa1009790 | 0.809725 | 1.641783e-50 | -8.615850e-47 |
| Msa0289780 | Msa1027790 | 0.822185 | 2.711168e-53 | -8.615850e-47 |
| Msa0289780 | Msa1028460 | 0.815884 | 7.352310e-52 | -8.615850e-47 |
| Msa0289780 | Msa1033960 | 0.810765 | 9.797247e-51 | -8.615850e-47 |
| Msa0289780 | Msa1045880 | 0.808360 | 3.218492e-50 | -8.615850e-47 |
| Msa0289780 | Msa1046870 | 0.816964 | 4.215912e-52 | -8.615850e-47 |
| Msa0289780 | Msa1051300 | 0.817090 | 3.949593e-52 | -8.615850e-47 |
| Msa0289780 | Msa1061180 | 0.816287 | 5.977428e-52 | -8.615850e-47 |
| Msa0289780 | Msa1067430 | 0.807958 | 3.919349e-50 | -8.615850e-47 |
| Msa0289780 | Msa1072080 | 0.802976 | 4.344047e-49 | -8.615850e-47 |
| Msa0289780 | Msa1080620 | 0.831449 | 1.659206e-55 | -8.615850e-47 |
| Msa0289780 | Msa1080690 | 0.827004 | 1.987613e-54 | -8.615850e-47 |
| Msa0289780 | Msa1084490 | 0.822598 | 2.174396e-53 | -8.615850e-47 |
| Msa0289780 | Msa1097850 | 0.811848 | 5.701998e-51 | -8.615850e-47 |
| Msa0289780 | Msa1105290 | 0.816786 | 4.621937e-52 | -8.615850e-47 |
| Msa0289780 | Msa1106560 | 0.819535 | 1.103941e-52 | -8.615850e-47 |
| Msa0289780 | Msa1106580 | 0.815515 | 8.884997e-52 | -8.615850e-47 |
| Msa0289780 | Msa1112610 | 0.814241 | 1.702814e-51 | -8.615850e-47 |
| Msa0289780 | Msa1125780 | 0.824288 | 8.756503e-54 | -8.615850e-47 |
| Msa0289780 | Msa1125950 | 0.827897 | 1.213596e-54 | -8.615850e-47 |
| Msa0289780 | Msa1126310 | 0.833968 | 3.931266e-56 | -8.615850e-47 |
| Msa0289780 | Msa1127510 | 0.808685 | 2.742344e-50 | -8.615850e-47 |
| Msa0289780 | Msa1129560 | 0.816306 | 5.920130e-52 | -8.615850e-47 |
| Msa0289780 | Msa1129720 | 0.839608 | 1.431345e-57 | -8.615850e-47 |
| Msa0289780 | Msa1134400 | 0.811060 | 8.457397e-51 | -8.615850e-47 |
| Msa0289780 | Msa1137610 | 0.801078 | 1.066890e-48 | -8.615850e-47 |
| Msa0289780 | Msa1159100 | 0.804890 | 1.738724e-49 | -8.615850e-47 |
| Msa0289780 | Msa1167160 | 0.846046 | 2.778140e-59 | -8.615850e-47 |
| Msa0289780 | Msa1171340 | 0.825550 | 4.410813e-54 | -8.615850e-47 |
| Msa0289780 | Msa1175750 | 0.800556 | 1.363472e-48 | -8.615850e-47 |
| Msa0289780 | Msa1183390 | 0.850401 | 1.739676e-60 | -8.615850e-47 |
| Msa0289780 | Msa1190910 | 0.817194 | 3.741682e-52 | -8.615850e-47 |
| Msa0289780 | Msa1194300 | 0.800905 | 1.157155e-48 | -8.615850e-47 |
| Msa0289780 | Msa1194330 | 0.807026 | 6.178663e-50 | -8.615850e-47 |
| Msa0289780 | Msa1197110 | 0.843005 | 1.827677e-58 | -8.615850e-47 |
| Msa0289780 | Msa1209150 | 0.802431 | 5.629059e-49 | -8.615850e-47 |
| Msa0289780 | Msa1219250 | 0.820214 | 7.721488e-53 | -8.615850e-47 |
| Msa0289780 | Msa1229050 | 0.815276 | 1.004588e-51 | -8.615850e-47 |
| Msa0289780 | Msa1235890 | 0.805233 | 1.473473e-49 | -8.615850e-47 |
| Msa0289780 | Msa1250670 | 0.801195 | 1.009800e-48 | -8.615850e-47 |
| Msa0289780 | Msa1259470 | 0.802302 | 5.984462e-49 | -8.615850e-47 |
| Msa0289780 | Msa1271490 | 0.809993 | 1.437393e-50 | -8.615850e-47 |
| Msa0289780 | Msa1271510 | 0.840403 | 8.882740e-58 | -8.615850e-47 |
| Msa0289780 | Msa1280120 | 0.816889 | 4.381653e-52 | -8.615850e-47 |
| Msa0289780 | Msa1293530 | 0.807173 | 5.753138e-50 | -8.615850e-47 |
| Msa0289780 | Msa1303750 | 0.804546 | 2.050863e-49 | -8.615850e-47 |
| Msa0289780 | Msa1303810 | 0.803150 | 3.999012e-49 | -8.615850e-47 |
| Msa0289780 | Msa1305520 | 0.844773 | 6.143365e-59 | -8.615850e-47 |
| Msa0289780 | Msa1307370 | 0.806972 | 6.345598e-50 | -8.615850e-47 |
| Msa0289780 | Msa1309360 | 0.842791 | 2.083381e-58 | -8.615850e-47 |
| Msa0289780 | Msa1312730 | 0.810045 | 1.401179e-50 | -8.615850e-47 |
| Msa0289780 | Msa1315980 | 0.809413 | 1.915756e-50 | -8.615850e-47 |
| Msa0289780 | Msa1337090 | 0.803785 | 2.953729e-49 | -8.615850e-47 |
| Msa0289780 | Msa1354040 | 0.829990 | 3.777669e-55 | -8.615850e-47 |
| Msa0289780 | Msa1365870 | 0.812065 | 5.114825e-51 | -8.615850e-47 |
| Msa0289780 | Msa1385900 | 0.805526 | 1.279130e-49 | -8.615850e-47 |
| Msa0289780 | Msa1398480 | 0.811527 | 6.694925e-51 | -8.615850e-47 |
| Msa0289780 | Msa1398840 | 0.814409 | 1.563418e-51 | -8.615850e-47 |
| Msa0289780 | Msa1404370 | 0.815157 | 1.067660e-51 | -8.615850e-47 |
| Msa0289780 | Msa1407710 | 0.825529 | 4.461637e-54 | -8.615850e-47 |
| Msa0289780 | Msa1412520 | 0.836009 | 1.202442e-56 | -8.615850e-47 |
| Msa0289780 | Msa1415250 | 0.802938 | 4.422860e-49 | -8.615850e-47 |
| Msa0289780 | Msa1418200 | 0.803352 | 3.631664e-49 | -8.615850e-47 |
| Msa0289780 | Msa1435580 | 0.800783 | 1.225471e-48 | -8.615850e-47 |
| Msa0289780 | Msa1438360 | 0.829086 | 6.267343e-55 | -8.615850e-47 |
| Msa0289780 | Msa1439670 | 0.805279 | 1.441442e-49 | -8.615850e-47 |
| Msa0289780 | Msa1442030 | 0.804680 | 1.923451e-49 | -8.615850e-47 |
| Msa0289780 | Msa1447230 | 0.803571 | 3.271023e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0289780 | MtrunA17_Chr2g0308801 | 87.903 | 124 | 14 | 1 | 1 | 124 | 1 | 123 | 8.64e-72 | 210 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTCCTCTCCTTACAATTT+TGG | 0.174141 | 2_3:-36053680 | Msa0289780:CDS |
| AGATCACAATACCTCAAATT+AGG | 0.206664 | 2_3:-36054662 | Msa0289780:CDS |
| TTCCTTGTTTGTTGGGTCAT+TGG | 0.234460 | 2_3:-36053640 | Msa0289780:CDS |
| ACAAACAAACATGTTTATTT+CGG | 0.303916 | 2_3:+36053571 | None:intergenic |
| TCCTTGTTTGTTGGGTCATT+GGG | 0.315553 | 2_3:-36053639 | Msa0289780:CDS |
| TGGGTCATTGGGTCCGTTGT+AGG | 0.319973 | 2_3:-36053628 | Msa0289780:CDS |
| CTTTACATCTGATCCTTCAT+TGG | 0.334627 | 2_3:+36053726 | None:intergenic |
| GGAAACTGGCAATGCTTCTC+AGG | 0.356908 | 2_3:-36053704 | Msa0289780:CDS |
| TAATATAAGTATGTTGTAGA+AGG | 0.363917 | 2_3:-36054767 | Msa0289780:five_prime_UTR |
| TCAACTTCTCTCCCACCTTC+AGG | 0.366725 | 2_3:-36054601 | Msa0289780:intron |
| TGATATCAAATGGCGTCTAT+TGG | 0.377537 | 2_3:-36054713 | Msa0289780:exon |
| GGATCAGATGTAAAGGAAAC+TGG | 0.407614 | 2_3:-36053718 | Msa0289780:CDS |
| GATCACAATACCTCAAATTA+GGG | 0.410926 | 2_3:-36054661 | Msa0289780:CDS |
| GTGGCAATGGGAAGGAATTG+AGG | 0.459199 | 2_3:+36054626 | None:intergenic |
| GGGTCATTGGGTCCGTTGTA+GGG | 0.469514 | 2_3:-36053627 | Msa0289780:CDS |
| GAGAAGTTGAGTGTGGCAAT+GGG | 0.472153 | 2_3:+36054614 | None:intergenic |
| GACAGTGAAGTGATATCAAA+TGG | 0.481246 | 2_3:-36054723 | Msa0289780:exon |
| AGAGTCCAGCCAAAATTGTA+AGG | 0.489275 | 2_3:+36053671 | None:intergenic |
| AATATAAGTATGTTGTAGAA+GGG | 0.502227 | 2_3:-36054766 | Msa0289780:five_prime_UTR |
| AGAGAAGTTGAGTGTGGCAA+TGG | 0.517362 | 2_3:+36054613 | None:intergenic |
| CAATGAAGGATCAGATGTAA+AGG | 0.522407 | 2_3:-36053725 | Msa0289780:CDS |
| TTGAAGGTAACCCTAATTTG+AGG | 0.528710 | 2_3:+36054651 | None:intergenic |
| TATAAGTATGTTGTAGAAGG+GGG | 0.528767 | 2_3:-36054764 | Msa0289780:five_prime_UTR |
| TGGATTCTCCTCACTGTCAC+CGG | 0.535382 | 2_3:-36054693 | Msa0289780:CDS |
| AAACATGTTTATTTCGGAGA+GGG | 0.543120 | 2_3:+36053577 | None:intergenic |
| TAAGTATGTTGTAGAAGGGG+GGG | 0.546350 | 2_3:-36054762 | Msa0289780:five_prime_UTR |
| ATAAGTATGTTGTAGAAGGG+GGG | 0.552399 | 2_3:-36054763 | Msa0289780:five_prime_UTR |
| GGTGGAAAATCATCCAATGA+AGG | 0.556794 | 2_3:-36053739 | Msa0289780:CDS |
| AGTTGAGTGTGGCAATGGGA+AGG | 0.564752 | 2_3:+36054618 | None:intergenic |
| AATGTATTATCCAGATGCAT+AGG | 0.565409 | 2_3:-36053826 | Msa0289780:intron |
| GCCAAAATTGTAAGGAGAGG+AGG | 0.568215 | 2_3:+36053679 | None:intergenic |
| ATATAAGTATGTTGTAGAAG+GGG | 0.569142 | 2_3:-36054765 | Msa0289780:five_prime_UTR |
| AAAGATAAGGACTAATACAA+TGG | 0.575529 | 2_3:+36053520 | None:intergenic |
| ACCCAATGACCCAACAAACA+AGG | 0.579860 | 2_3:+36053638 | None:intergenic |
| TGGACTTGATGGTATTTGAG+TGG | 0.587675 | 2_3:-36053474 | Msa0289780:three_prime_UTR |
| ACAAACCCCAACTCCAGTGG+TGG | 0.594457 | 2_3:-36053757 | Msa0289780:CDS |
| ACTTGATGGTATTTGAGTGG+TGG | 0.598807 | 2_3:-36053471 | Msa0289780:three_prime_UTR |
| GAAACTGGCAATGCTTCTCA+GGG | 0.603720 | 2_3:-36053703 | Msa0289780:CDS |
| TCATTGGGTCCGTTGTAGGG+TGG | 0.604108 | 2_3:-36053624 | Msa0289780:CDS |
| ATGGTATTTGAGTGGTGGAA+AGG | 0.623749 | 2_3:-36053466 | Msa0289780:three_prime_UTR |
| CCAGCCAAAATTGTAAGGAG+AGG | 0.629021 | 2_3:+36053676 | None:intergenic |
| GGTGGGAGAGAAGTTGAGTG+TGG | 0.637036 | 2_3:+36054607 | None:intergenic |
| CAAACATGTTTATTTCGGAG+AGG | 0.642713 | 2_3:+36053576 | None:intergenic |
| TATTGTGATCTGACTGTCGC+CGG | 0.646250 | 2_3:+36054674 | None:intergenic |
| GCATGAACCAGACCTGAAGG+TGG | 0.646924 | 2_3:+36054589 | None:intergenic |
| CATGAACCAGACCTGAAGGT+GGG | 0.649807 | 2_3:+36054590 | None:intergenic |
| GCTACAAACCCCAACTCCAG+TGG | 0.660305 | 2_3:-36053760 | Msa0289780:CDS |
| ACTTATCAACCACCCTACAA+CGG | 0.666808 | 2_3:+36053615 | None:intergenic |
| GACTGTCGCCGGTGACAGTG+AGG | 0.666827 | 2_3:+36054685 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTAAAATTTAATGATA+AGG | + | chr2_3:36054707-36054726 | None:intergenic | 10.0% |
| !!! | TTTTGTAAAATTTAATGATA+AGG | + | chr2_3:36054707-36054726 | None:intergenic | 10.0% |
| !! | TAATATAAGTATGTTGTAGA+AGG | - | chr2_3:36053324-36053343 | Msa0289780:three_prime_UTR | 20.0% |
| !! | AATATAAGTATGTTGTAGAA+GGG | - | chr2_3:36053325-36053344 | Msa0289780:three_prime_UTR | 20.0% |
| !! | TATTACTACTTAAAAAACCT+TGG | + | chr2_3:36053585-36053604 | None:intergenic | 20.0% |
| !!! | TGAATTGATTTTGAAATGTT+TGG | - | chr2_3:36053709-36053728 | Msa0289780:CDS | 20.0% |
| !!! | TTTGAAATTTTGTTTGTCAT+TGG | + | chr2_3:36053976-36053995 | None:intergenic | 20.0% |
| !!! | TAACATGTTTGTTTTGATTA+AGG | + | chr2_3:36054119-36054138 | None:intergenic | 20.0% |
| !! | ACAAACAAACATGTTTATTT+CGG | + | chr2_3:36054523-36054542 | None:intergenic | 20.0% |
| !!! | CAAAAATTCTTTATTTCGTT+CGG | - | chr2_3:36054722-36054741 | Msa0289780:exon | 20.0% |
| !! | ACATACTTATATTACATTTG+AGG | + | chr2_3:36053318-36053337 | None:intergenic | 20.0% |
| !! | TAATATAAGTATGTTGTAGA+AGG | - | chr2_3:36053324-36053343 | Msa0289780:three_prime_UTR | 20.0% |
| !! | AATATAAGTATGTTGTAGAA+GGG | - | chr2_3:36053325-36053344 | Msa0289780:three_prime_UTR | 20.0% |
| !! | TATTACTACTTAAAAAACCT+TGG | + | chr2_3:36053585-36053604 | None:intergenic | 20.0% |
| !!! | TGAATTGATTTTGAAATGTT+TGG | - | chr2_3:36053709-36053728 | Msa0289780:CDS | 20.0% |
| !!! | TTTGAAATTTTGTTTGTCAT+TGG | + | chr2_3:36053976-36053995 | None:intergenic | 20.0% |
| !!! | TAACATGTTTGTTTTGATTA+AGG | + | chr2_3:36054119-36054138 | None:intergenic | 20.0% |
| !! | ACAAACAAACATGTTTATTT+CGG | + | chr2_3:36054523-36054542 | None:intergenic | 20.0% |
| !!! | CAAAAATTCTTTATTTCGTT+CGG | - | chr2_3:36054722-36054741 | Msa0289780:exon | 20.0% |
| ! | ATATAAGTATGTTGTAGAAG+GGG | - | chr2_3:36053326-36053345 | Msa0289780:three_prime_UTR | 25.0% |
| ! | TTGAAACCTAAAAAAAAGCA+AGG | + | chr2_3:36053532-36053551 | None:intergenic | 25.0% |
| !!! | GCAAATTTTTGTTTCTCTAT+TGG | - | chr2_3:36053659-36053678 | Msa0289780:CDS | 25.0% |
| !!! | AATTTTTGTTTCTCTATTGG+AGG | - | chr2_3:36053662-36053681 | Msa0289780:CDS | 25.0% |
| !! | AAGTCAAAAATTGTAGCTTT+TGG | - | chr2_3:36053781-36053800 | Msa0289780:CDS | 25.0% |
| ! | TTGATTGAACACTAAATTCA+GGG | + | chr2_3:36053826-36053845 | None:intergenic | 25.0% |
| ! | TTTCCTAGAATTAGATGAAA+AGG | - | chr2_3:36053899-36053918 | Msa0289780:intron | 25.0% |
| ! | TTCCTAGAATTAGATGAAAA+GGG | - | chr2_3:36053900-36053919 | Msa0289780:intron | 25.0% |
| !!! | ATGTTTGTTTTGATTAAGGA+GGG | + | chr2_3:36054115-36054134 | None:intergenic | 25.0% |
| ! | AAAGATAAGGACTAATACAA+TGG | + | chr2_3:36054574-36054593 | None:intergenic | 25.0% |
| !!! | TTAGTCCTTATCTTTTTTCT+TGG | - | chr2_3:36054579-36054598 | Msa0289780:intron | 25.0% |
| ! | ATTAGCCAAGAAAAAAGATA+AGG | + | chr2_3:36054587-36054606 | None:intergenic | 25.0% |
| ! | ATATAAGTATGTTGTAGAAG+GGG | - | chr2_3:36053326-36053345 | Msa0289780:three_prime_UTR | 25.0% |
| ! | TTGAAACCTAAAAAAAAGCA+AGG | + | chr2_3:36053532-36053551 | None:intergenic | 25.0% |
| !!! | GCAAATTTTTGTTTCTCTAT+TGG | - | chr2_3:36053659-36053678 | Msa0289780:CDS | 25.0% |
| !!! | AATTTTTGTTTCTCTATTGG+AGG | - | chr2_3:36053662-36053681 | Msa0289780:CDS | 25.0% |
| !! | AAGTCAAAAATTGTAGCTTT+TGG | - | chr2_3:36053781-36053800 | Msa0289780:CDS | 25.0% |
| ! | TTGATTGAACACTAAATTCA+GGG | + | chr2_3:36053826-36053845 | None:intergenic | 25.0% |
| ! | TTTCCTAGAATTAGATGAAA+AGG | - | chr2_3:36053899-36053918 | Msa0289780:intron | 25.0% |
| ! | TTCCTAGAATTAGATGAAAA+GGG | - | chr2_3:36053900-36053919 | Msa0289780:intron | 25.0% |
| !!! | ATGTTTGTTTTGATTAAGGA+GGG | + | chr2_3:36054115-36054134 | None:intergenic | 25.0% |
| ! | AAAGATAAGGACTAATACAA+TGG | + | chr2_3:36054574-36054593 | None:intergenic | 25.0% |
| !!! | TTAGTCCTTATCTTTTTTCT+TGG | - | chr2_3:36054579-36054598 | Msa0289780:intron | 25.0% |
| ! | ATTAGCCAAGAAAAAAGATA+AGG | + | chr2_3:36054587-36054606 | None:intergenic | 25.0% |
| TATAAGTATGTTGTAGAAGG+GGG | - | chr2_3:36053327-36053346 | Msa0289780:three_prime_UTR | 30.0% | |
| AGATCACAATACCTCAAATT+AGG | - | chr2_3:36053429-36053448 | Msa0289780:three_prime_UTR | 30.0% | |
| GATCACAATACCTCAAATTA+GGG | - | chr2_3:36053430-36053449 | Msa0289780:three_prime_UTR | 30.0% | |
| !!! | GCATTTCCTTGCTTTTTTTT+AGG | - | chr2_3:36053523-36053542 | Msa0289780:three_prime_UTR | 30.0% |
| AAACCTTGGCTACAATAATT+GGG | + | chr2_3:36053571-36053590 | None:intergenic | 30.0% | |
| AAAACCTTGGCTACAATAAT+TGG | + | chr2_3:36053572-36053591 | None:intergenic | 30.0% | |
| GTTGATTGAACACTAAATTC+AGG | + | chr2_3:36053827-36053846 | None:intergenic | 30.0% | |
| TCCTAGAATTAGATGAAAAG+GGG | - | chr2_3:36053901-36053920 | Msa0289780:intron | 30.0% | |
| TTAGTCATCAAATGTAGTGT+TGG | - | chr2_3:36053941-36053960 | Msa0289780:intron | 30.0% | |
| !! | GAATTGATTTTCGAGATTTC+TGG | + | chr2_3:36054005-36054024 | None:intergenic | 30.0% |
| TCATCTATGAAATGATTCCT+AGG | - | chr2_3:36054023-36054042 | Msa0289780:intron | 30.0% | |
| AAATAAGTATCATGCATCCT+AGG | + | chr2_3:36054043-36054062 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGATTAAGGAG+GGG | + | chr2_3:36054114-36054133 | None:intergenic | 30.0% |
| !!! | CATGTTTGTTTTGATTAAGG+AGG | + | chr2_3:36054116-36054135 | None:intergenic | 30.0% |
| AAACATGTTAGTTCATTGAG+TGG | - | chr2_3:36054129-36054148 | Msa0289780:intron | 30.0% | |
| AATGTATTATCCAGATGCAT+AGG | - | chr2_3:36054265-36054284 | Msa0289780:intron | 30.0% | |
| !! | TTGTGTTTTTCCTTGTTTGT+TGG | - | chr2_3:36054443-36054462 | Msa0289780:intron | 30.0% |
| !! | TGTGTTTTTCCTTGTTTGTT+GGG | - | chr2_3:36054444-36054463 | Msa0289780:intron | 30.0% |
| AAACATGTTTATTTCGGAGA+GGG | + | chr2_3:36054517-36054536 | None:intergenic | 30.0% | |
| TGAGAAAAAAGCAGGATAAA+GGG | - | chr2_3:36054654-36054673 | Msa0289780:CDS | 30.0% | |
| TATAAGTATGTTGTAGAAGG+GGG | - | chr2_3:36053327-36053346 | Msa0289780:three_prime_UTR | 30.0% | |
| AGATCACAATACCTCAAATT+AGG | - | chr2_3:36053429-36053448 | Msa0289780:three_prime_UTR | 30.0% | |
| GATCACAATACCTCAAATTA+GGG | - | chr2_3:36053430-36053449 | Msa0289780:three_prime_UTR | 30.0% | |
| !!! | GCATTTCCTTGCTTTTTTTT+AGG | - | chr2_3:36053523-36053542 | Msa0289780:three_prime_UTR | 30.0% |
| AAACCTTGGCTACAATAATT+GGG | + | chr2_3:36053571-36053590 | None:intergenic | 30.0% | |
| AAAACCTTGGCTACAATAAT+TGG | + | chr2_3:36053572-36053591 | None:intergenic | 30.0% | |
| GTTGATTGAACACTAAATTC+AGG | + | chr2_3:36053827-36053846 | None:intergenic | 30.0% | |
| TCCTAGAATTAGATGAAAAG+GGG | - | chr2_3:36053901-36053920 | Msa0289780:intron | 30.0% | |
| TTAGTCATCAAATGTAGTGT+TGG | - | chr2_3:36053941-36053960 | Msa0289780:intron | 30.0% | |
| !! | GAATTGATTTTCGAGATTTC+TGG | + | chr2_3:36054005-36054024 | None:intergenic | 30.0% |
| TCATCTATGAAATGATTCCT+AGG | - | chr2_3:36054023-36054042 | Msa0289780:intron | 30.0% | |
| AAATAAGTATCATGCATCCT+AGG | + | chr2_3:36054043-36054062 | None:intergenic | 30.0% | |
| !!! | TGTTTGTTTTGATTAAGGAG+GGG | + | chr2_3:36054114-36054133 | None:intergenic | 30.0% |
| !!! | CATGTTTGTTTTGATTAAGG+AGG | + | chr2_3:36054116-36054135 | None:intergenic | 30.0% |
| AAACATGTTAGTTCATTGAG+TGG | - | chr2_3:36054129-36054148 | Msa0289780:intron | 30.0% | |
| AATGTATTATCCAGATGCAT+AGG | - | chr2_3:36054265-36054284 | Msa0289780:intron | 30.0% | |
| !! | TTGTGTTTTTCCTTGTTTGT+TGG | - | chr2_3:36054443-36054462 | Msa0289780:intron | 30.0% |
| !! | TGTGTTTTTCCTTGTTTGTT+GGG | - | chr2_3:36054444-36054463 | Msa0289780:intron | 30.0% |
| AAACATGTTTATTTCGGAGA+GGG | + | chr2_3:36054517-36054536 | None:intergenic | 30.0% | |
| TGAGAAAAAAGCAGGATAAA+GGG | - | chr2_3:36054654-36054673 | Msa0289780:CDS | 30.0% | |
| ATAAGTATGTTGTAGAAGGG+GGG | - | chr2_3:36053328-36053347 | Msa0289780:three_prime_UTR | 35.0% | |
| GACAGTGAAGTGATATCAAA+TGG | - | chr2_3:36053368-36053387 | Msa0289780:three_prime_UTR | 35.0% | |
| TGATATCAAATGGCGTCTAT+TGG | - | chr2_3:36053378-36053397 | Msa0289780:three_prime_UTR | 35.0% | |
| TTGAAGGTAACCCTAATTTG+AGG | + | chr2_3:36053443-36053462 | None:intergenic | 35.0% | |
| CCTAGAATTAGATGAAAAGG+GGG | - | chr2_3:36053902-36053921 | Msa0289780:intron | 35.0% | |
| CTTTACATCTGATCCTTCAT+TGG | + | chr2_3:36054368-36054387 | None:intergenic | 35.0% | |
| CAATGAAGGATCAGATGTAA+AGG | - | chr2_3:36054366-36054385 | Msa0289780:intron | 35.0% | |
| CAAACATGTTTATTTCGGAG+AGG | + | chr2_3:36054518-36054537 | None:intergenic | 35.0% | |
| ! | CTTGGCTAATTTTGTGCATT+TGG | - | chr2_3:36054597-36054616 | Msa0289780:intron | 35.0% |
| ! | TTTTGTGCATTTGGACTTGA+TGG | - | chr2_3:36054606-36054625 | Msa0289780:CDS | 35.0% |
| GTGAGAAAAAAGCAGGATAA+AGG | - | chr2_3:36054653-36054672 | Msa0289780:CDS | 35.0% | |
| ATAAGTATGTTGTAGAAGGG+GGG | - | chr2_3:36053328-36053347 | Msa0289780:three_prime_UTR | 35.0% | |
| GACAGTGAAGTGATATCAAA+TGG | - | chr2_3:36053368-36053387 | Msa0289780:three_prime_UTR | 35.0% | |
| TGATATCAAATGGCGTCTAT+TGG | - | chr2_3:36053378-36053397 | Msa0289780:three_prime_UTR | 35.0% | |
| TTGAAGGTAACCCTAATTTG+AGG | + | chr2_3:36053443-36053462 | None:intergenic | 35.0% | |
| CCTAGAATTAGATGAAAAGG+GGG | - | chr2_3:36053902-36053921 | Msa0289780:intron | 35.0% | |
| CTTTACATCTGATCCTTCAT+TGG | + | chr2_3:36054368-36054387 | None:intergenic | 35.0% | |
| CAATGAAGGATCAGATGTAA+AGG | - | chr2_3:36054366-36054385 | Msa0289780:intron | 35.0% | |
| CAAACATGTTTATTTCGGAG+AGG | + | chr2_3:36054518-36054537 | None:intergenic | 35.0% | |
| ! | CTTGGCTAATTTTGTGCATT+TGG | - | chr2_3:36054597-36054616 | Msa0289780:intron | 35.0% |
| ! | TTTTGTGCATTTGGACTTGA+TGG | - | chr2_3:36054606-36054625 | Msa0289780:CDS | 35.0% |
| GTGAGAAAAAAGCAGGATAA+AGG | - | chr2_3:36054653-36054672 | Msa0289780:CDS | 35.0% | |
| TAAGTATGTTGTAGAAGGGG+GGG | - | chr2_3:36053329-36053348 | Msa0289780:three_prime_UTR | 40.0% | |
| !! | GGAAGGAATTGAGGTTTTGA+AGG | + | chr2_3:36053459-36053478 | None:intergenic | 40.0% |
| TGACCCAATTATTGTAGCCA+AGG | - | chr2_3:36053565-36053584 | Msa0289780:three_prime_UTR | 40.0% | |
| ! | CCCCCTTTTCATCTAATTCT+AGG | + | chr2_3:36053905-36053924 | None:intergenic | 40.0% |
| !! | ATTTCTAGAGCCTATGCATC+TGG | + | chr2_3:36054278-36054297 | None:intergenic | 40.0% |
| ! | ATTGGATGATTTTCCACCAC+TGG | + | chr2_3:36054350-36054369 | None:intergenic | 40.0% |
| GGTGGAAAATCATCCAATGA+AGG | - | chr2_3:36054352-36054371 | Msa0289780:intron | 40.0% | |
| GGATCAGATGTAAAGGAAAC+TGG | - | chr2_3:36054373-36054392 | Msa0289780:intron | 40.0% | |
| ! | ACCTCCTCTCCTTACAATTT+TGG | - | chr2_3:36054411-36054430 | Msa0289780:intron | 40.0% |
| AGAGTCCAGCCAAAATTGTA+AGG | + | chr2_3:36054423-36054442 | None:intergenic | 40.0% | |
| ! | TTCCTTGTTTGTTGGGTCAT+TGG | - | chr2_3:36054451-36054470 | Msa0289780:intron | 40.0% |
| ! | TCCTTGTTTGTTGGGTCATT+GGG | - | chr2_3:36054452-36054471 | Msa0289780:intron | 40.0% |
| ACTTATCAACCACCCTACAA+CGG | + | chr2_3:36054479-36054498 | None:intergenic | 40.0% | |
| ! | TGGACTTGATGGTATTTGAG+TGG | - | chr2_3:36054617-36054636 | Msa0289780:CDS | 40.0% |
| ! | ACTTGATGGTATTTGAGTGG+TGG | - | chr2_3:36054620-36054639 | Msa0289780:CDS | 40.0% |
| ! | ATGGTATTTGAGTGGTGGAA+AGG | - | chr2_3:36054625-36054644 | Msa0289780:CDS | 40.0% |
| GGTCAAAGTGAGAAAAAAGC+AGG | - | chr2_3:36054646-36054665 | Msa0289780:CDS | 40.0% | |
| TAAGTATGTTGTAGAAGGGG+GGG | - | chr2_3:36053329-36053348 | Msa0289780:three_prime_UTR | 40.0% | |
| !! | GGAAGGAATTGAGGTTTTGA+AGG | + | chr2_3:36053459-36053478 | None:intergenic | 40.0% |
| TGACCCAATTATTGTAGCCA+AGG | - | chr2_3:36053565-36053584 | Msa0289780:three_prime_UTR | 40.0% | |
| ! | CCCCCTTTTCATCTAATTCT+AGG | + | chr2_3:36053905-36053924 | None:intergenic | 40.0% |
| !! | ATTTCTAGAGCCTATGCATC+TGG | + | chr2_3:36054278-36054297 | None:intergenic | 40.0% |
| ! | ATTGGATGATTTTCCACCAC+TGG | + | chr2_3:36054350-36054369 | None:intergenic | 40.0% |
| GGTGGAAAATCATCCAATGA+AGG | - | chr2_3:36054352-36054371 | Msa0289780:intron | 40.0% | |
| GGATCAGATGTAAAGGAAAC+TGG | - | chr2_3:36054373-36054392 | Msa0289780:intron | 40.0% | |
| ! | ACCTCCTCTCCTTACAATTT+TGG | - | chr2_3:36054411-36054430 | Msa0289780:intron | 40.0% |
| AGAGTCCAGCCAAAATTGTA+AGG | + | chr2_3:36054423-36054442 | None:intergenic | 40.0% | |
| ! | TTCCTTGTTTGTTGGGTCAT+TGG | - | chr2_3:36054451-36054470 | Msa0289780:intron | 40.0% |
| ! | TCCTTGTTTGTTGGGTCATT+GGG | - | chr2_3:36054452-36054471 | Msa0289780:intron | 40.0% |
| ACTTATCAACCACCCTACAA+CGG | + | chr2_3:36054479-36054498 | None:intergenic | 40.0% | |
| ! | TGGACTTGATGGTATTTGAG+TGG | - | chr2_3:36054617-36054636 | Msa0289780:CDS | 40.0% |
| ! | ACTTGATGGTATTTGAGTGG+TGG | - | chr2_3:36054620-36054639 | Msa0289780:CDS | 40.0% |
| ! | ATGGTATTTGAGTGGTGGAA+AGG | - | chr2_3:36054625-36054644 | Msa0289780:CDS | 40.0% |
| GGTCAAAGTGAGAAAAAAGC+AGG | - | chr2_3:36054646-36054665 | Msa0289780:CDS | 40.0% | |
| TATTGTGATCTGACTGTCGC+CGG | + | chr2_3:36053420-36053439 | None:intergenic | 45.0% | |
| GAGAAGTTGAGTGTGGCAAT+GGG | + | chr2_3:36053480-36053499 | None:intergenic | 45.0% | |
| AGAGAAGTTGAGTGTGGCAA+TGG | + | chr2_3:36053481-36053500 | None:intergenic | 45.0% | |
| AATGCATGAACCAGACCTGA+AGG | + | chr2_3:36053508-36053527 | None:intergenic | 45.0% | |
| ! | ATTTTCCACCACTGGAGTTG+GGG | + | chr2_3:36054342-36054361 | None:intergenic | 45.0% |
| ! | GATTTTCCACCACTGGAGTT+GGG | + | chr2_3:36054343-36054362 | None:intergenic | 45.0% |
| ! | TGATTTTCCACCACTGGAGT+TGG | + | chr2_3:36054344-36054363 | None:intergenic | 45.0% |
| GAAACTGGCAATGCTTCTCA+GGG | - | chr2_3:36054388-36054407 | Msa0289780:intron | 45.0% | |
| GCCAAAATTGTAAGGAGAGG+AGG | + | chr2_3:36054415-36054434 | None:intergenic | 45.0% | |
| CCAGCCAAAATTGTAAGGAG+AGG | + | chr2_3:36054418-36054437 | None:intergenic | 45.0% | |
| !! | CCTCTCCTTACAATTTTGGC+TGG | - | chr2_3:36054415-36054434 | Msa0289780:intron | 45.0% |
| ACCCAATGACCCAACAAACA+AGG | + | chr2_3:36054456-36054475 | None:intergenic | 45.0% | |
| TATTGTGATCTGACTGTCGC+CGG | + | chr2_3:36053420-36053439 | None:intergenic | 45.0% | |
| GAGAAGTTGAGTGTGGCAAT+GGG | + | chr2_3:36053480-36053499 | None:intergenic | 45.0% | |
| AGAGAAGTTGAGTGTGGCAA+TGG | + | chr2_3:36053481-36053500 | None:intergenic | 45.0% | |
| AATGCATGAACCAGACCTGA+AGG | + | chr2_3:36053508-36053527 | None:intergenic | 45.0% | |
| ! | ATTTTCCACCACTGGAGTTG+GGG | + | chr2_3:36054342-36054361 | None:intergenic | 45.0% |
| ! | GATTTTCCACCACTGGAGTT+GGG | + | chr2_3:36054343-36054362 | None:intergenic | 45.0% |
| ! | TGATTTTCCACCACTGGAGT+TGG | + | chr2_3:36054344-36054363 | None:intergenic | 45.0% |
| GAAACTGGCAATGCTTCTCA+GGG | - | chr2_3:36054388-36054407 | Msa0289780:intron | 45.0% | |
| GCCAAAATTGTAAGGAGAGG+AGG | + | chr2_3:36054415-36054434 | None:intergenic | 45.0% | |
| CCAGCCAAAATTGTAAGGAG+AGG | + | chr2_3:36054418-36054437 | None:intergenic | 45.0% | |
| !! | CCTCTCCTTACAATTTTGGC+TGG | - | chr2_3:36054415-36054434 | Msa0289780:intron | 45.0% |
| ACCCAATGACCCAACAAACA+AGG | + | chr2_3:36054456-36054475 | None:intergenic | 45.0% | |
| TGGATTCTCCTCACTGTCAC+CGG | - | chr2_3:36053398-36053417 | Msa0289780:three_prime_UTR | 50.0% | |
| GTGGCAATGGGAAGGAATTG+AGG | + | chr2_3:36053468-36053487 | None:intergenic | 50.0% | |
| AGTTGAGTGTGGCAATGGGA+AGG | + | chr2_3:36053476-36053495 | None:intergenic | 50.0% | |
| TCAACTTCTCTCCCACCTTC+AGG | - | chr2_3:36053490-36053509 | Msa0289780:three_prime_UTR | 50.0% | |
| CATGAACCAGACCTGAAGGT+GGG | + | chr2_3:36053504-36053523 | None:intergenic | 50.0% | |
| GGAAACTGGCAATGCTTCTC+AGG | - | chr2_3:36054387-36054406 | Msa0289780:intron | 50.0% | |
| TGGATTCTCCTCACTGTCAC+CGG | - | chr2_3:36053398-36053417 | Msa0289780:three_prime_UTR | 50.0% | |
| GTGGCAATGGGAAGGAATTG+AGG | + | chr2_3:36053468-36053487 | None:intergenic | 50.0% | |
| AGTTGAGTGTGGCAATGGGA+AGG | + | chr2_3:36053476-36053495 | None:intergenic | 50.0% | |
| TCAACTTCTCTCCCACCTTC+AGG | - | chr2_3:36053490-36053509 | Msa0289780:three_prime_UTR | 50.0% | |
| CATGAACCAGACCTGAAGGT+GGG | + | chr2_3:36053504-36053523 | None:intergenic | 50.0% | |
| GGAAACTGGCAATGCTTCTC+AGG | - | chr2_3:36054387-36054406 | Msa0289780:intron | 50.0% | |
| GGTGGGAGAGAAGTTGAGTG+TGG | + | chr2_3:36053487-36053506 | None:intergenic | 55.0% | |
| TTCTCTCCCACCTTCAGGTC+TGG | - | chr2_3:36053495-36053514 | Msa0289780:three_prime_UTR | 55.0% | |
| GCATGAACCAGACCTGAAGG+TGG | + | chr2_3:36053505-36053524 | None:intergenic | 55.0% | |
| GCTACAAACCCCAACTCCAG+TGG | - | chr2_3:36054331-36054350 | Msa0289780:intron | 55.0% | |
| ACAAACCCCAACTCCAGTGG+TGG | - | chr2_3:36054334-36054353 | Msa0289780:intron | 55.0% | |
| TGGGTCATTGGGTCCGTTGT+AGG | - | chr2_3:36054463-36054482 | Msa0289780:intron | 55.0% | |
| GGGTCATTGGGTCCGTTGTA+GGG | - | chr2_3:36054464-36054483 | Msa0289780:intron | 55.0% | |
| TCATTGGGTCCGTTGTAGGG+TGG | - | chr2_3:36054467-36054486 | Msa0289780:intron | 55.0% | |
| GGTGGGAGAGAAGTTGAGTG+TGG | + | chr2_3:36053487-36053506 | None:intergenic | 55.0% | |
| TTCTCTCCCACCTTCAGGTC+TGG | - | chr2_3:36053495-36053514 | Msa0289780:three_prime_UTR | 55.0% | |
| GCATGAACCAGACCTGAAGG+TGG | + | chr2_3:36053505-36053524 | None:intergenic | 55.0% | |
| GCTACAAACCCCAACTCCAG+TGG | - | chr2_3:36054331-36054350 | Msa0289780:intron | 55.0% | |
| ACAAACCCCAACTCCAGTGG+TGG | - | chr2_3:36054334-36054353 | Msa0289780:intron | 55.0% | |
| TGGGTCATTGGGTCCGTTGT+AGG | - | chr2_3:36054463-36054482 | Msa0289780:intron | 55.0% | |
| GGGTCATTGGGTCCGTTGTA+GGG | - | chr2_3:36054464-36054483 | Msa0289780:intron | 55.0% | |
| TCATTGGGTCCGTTGTAGGG+TGG | - | chr2_3:36054467-36054486 | Msa0289780:intron | 55.0% | |
| GACTGTCGCCGGTGACAGTG+AGG | + | chr2_3:36053409-36053428 | None:intergenic | 65.0% | |
| GACTGTCGCCGGTGACAGTG+AGG | + | chr2_3:36053409-36053428 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 36053316 | 36054797 | 36053316 | ID=Msa0289780;Name=Msa0289780 |
| chr2_3 | mRNA | 36053316 | 36054797 | 36053316 | ID=Msa0289780-mRNA-1;Parent=Msa0289780;Name=Msa0289780-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|2|269|124 |
| chr2_3 | exon | 36053316 | 36053834 | 36053316 | ID=Msa0289780-mRNA-1:exon:11783;Parent=Msa0289780-mRNA-1 |
| chr2_3 | exon | 36054602 | 36054797 | 36054602 | ID=Msa0289780-mRNA-1:exon:11782;Parent=Msa0289780-mRNA-1 |
| chr2_3 | five_prime_UTR | 36054727 | 36054797 | 36054727 | ID=Msa0289780-mRNA-1:five_prime_utr;Parent=Msa0289780-mRNA-1 |
| chr2_3 | CDS | 36054602 | 36054726 | 36054602 | ID=Msa0289780-mRNA-1:cds;Parent=Msa0289780-mRNA-1 |
| chr2_3 | CDS | 36053585 | 36053834 | 36053585 | ID=Msa0289780-mRNA-1:cds;Parent=Msa0289780-mRNA-1 |
| chr2_3 | three_prime_UTR | 36053316 | 36053584 | 36053316 | ID=Msa0289780-mRNA-1:three_prime_utr;Parent=Msa0289780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
