Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780570 | AET00229.2 | 96.839 | 348 | 5 | 3 | 1 | 348 | 126 | 467 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780570 | sp|Q94CK9|LRP1_ARATH | 48.817 | 338 | 122 | 12 | 3 | 327 | 9 | 308 | 2.92e-80 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780570 | G7K357 | 96.839 | 348 | 5 | 3 | 1 | 348 | 126 | 467 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0780570 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0780570 | 0.824978 | 6.020673e-54 | -8.615850e-47 |
| Msa0002580 | Msa0780570 | 0.812520 | 4.067297e-51 | -8.615850e-47 |
| Msa0017670 | Msa0780570 | 0.837625 | 4.654312e-57 | -8.615850e-47 |
| Msa0017930 | Msa0780570 | 0.802815 | 4.690827e-49 | -8.615850e-47 |
| Msa0030700 | Msa0780570 | 0.808812 | 2.576496e-50 | -8.615850e-47 |
| Msa0077340 | Msa0780570 | 0.822766 | 1.986931e-53 | -8.615850e-47 |
| Msa0081020 | Msa0780570 | 0.805216 | 1.485563e-49 | -8.615850e-47 |
| Msa0098040 | Msa0780570 | 0.838792 | 2.329977e-57 | -8.615850e-47 |
| Msa0104670 | Msa0780570 | 0.802603 | 5.186939e-49 | -8.615850e-47 |
| Msa0657720 | Msa0780570 | 0.804956 | 1.683737e-49 | -8.615850e-47 |
| Msa0674480 | Msa0780570 | 0.830258 | 3.250557e-55 | -8.615850e-47 |
| Msa0702720 | Msa0780570 | 0.814603 | 1.416241e-51 | -8.615850e-47 |
| Msa0702790 | Msa0780570 | 0.808921 | 2.442003e-50 | -8.615850e-47 |
| Msa0752450 | Msa0780570 | 0.820526 | 6.547426e-53 | -8.615850e-47 |
| Msa0780570 | Msa0786370 | 0.807332 | 5.323832e-50 | -8.615850e-47 |
| Msa0780570 | Msa0792370 | 0.812778 | 3.572034e-51 | -8.615850e-47 |
| Msa0780570 | Msa0795750 | 0.827878 | 1.226295e-54 | -8.615850e-47 |
| Msa0780570 | Msa0822730 | 0.824005 | 1.020126e-53 | -8.615850e-47 |
| Msa0780570 | Msa0828950 | 0.807742 | 4.355642e-50 | -8.615850e-47 |
| Msa0780570 | Msa0829300 | 0.820257 | 7.547085e-53 | -8.615850e-47 |
| Msa0780570 | Msa0829330 | 0.822259 | 2.607102e-53 | -8.615850e-47 |
| Msa0780570 | Msa0833530 | 0.839196 | 1.831194e-57 | -8.615850e-47 |
| Msa0780570 | Msa1101880 | 0.803898 | 2.798484e-49 | -8.615850e-47 |
| Msa0780570 | Msa1132470 | 0.806451 | 8.172131e-50 | -8.615850e-47 |
| Msa0780570 | Msa1225860 | -0.810019 | 1.418930e-50 | -8.615850e-47 |
| Msa0780570 | Msa1265650 | 0.814128 | 1.803589e-51 | -8.615850e-47 |
| Msa0780570 | Msa1303560 | 0.814804 | 1.278460e-51 | -8.615850e-47 |
| Msa0780570 | Msa1303650 | 0.813434 | 2.564511e-51 | -8.615850e-47 |
| Msa0780570 | Msa1325410 | -0.805607 | 1.230278e-49 | -8.615850e-47 |
| Msa0780570 | Msa1341840 | 0.830013 | 3.729254e-55 | -8.615850e-47 |
| Msa0780570 | Msa1356600 | -0.802136 | 6.472117e-49 | -8.615850e-47 |
| Msa0780570 | Msa1382300 | 0.814876 | 1.232578e-51 | -8.615850e-47 |
| Msa0780570 | Msa1405460 | 0.824831 | 6.522992e-54 | -8.615850e-47 |
| Msa0780570 | Msa1461370 | 0.814052 | 1.874882e-51 | -8.615850e-47 |
| Msa0225100 | Msa0780570 | 0.800918 | 1.150213e-48 | -8.615850e-47 |
| Msa0226310 | Msa0780570 | 0.805886 | 1.074928e-49 | -8.615850e-47 |
| Msa0365210 | Msa0780570 | 0.813774 | 2.159052e-51 | -8.615850e-47 |
| Msa0369790 | Msa0780570 | 0.814057 | 1.870442e-51 | -8.615850e-47 |
| Msa0436910 | Msa0780570 | 0.806913 | 6.528171e-50 | -8.615850e-47 |
| Msa0464000 | Msa0780570 | 0.811391 | 7.168425e-51 | -8.615850e-47 |
| Msa0240900 | Msa0780570 | 0.809144 | 2.187541e-50 | -8.615850e-47 |
| Msa0244640 | Msa0780570 | 0.826671 | 2.387099e-54 | -8.615850e-47 |
| Msa0251710 | Msa0780570 | 0.829734 | 4.361414e-55 | -8.615850e-47 |
| Msa0266180 | Msa0780570 | 0.818326 | 2.078581e-52 | -8.615850e-47 |
| Msa0283330 | Msa0780570 | 0.813585 | 2.376542e-51 | -8.615850e-47 |
| Msa0290720 | Msa0780570 | 0.801643 | 8.173048e-49 | -8.615850e-47 |
| Msa0304570 | Msa0780570 | 0.806980 | 6.320127e-50 | -8.615850e-47 |
| Msa0304680 | Msa0780570 | 0.809071 | 2.267840e-50 | -8.615850e-47 |
| Msa0307670 | Msa0780570 | 0.818100 | 2.338190e-52 | -8.615850e-47 |
| Msa0320500 | Msa0780570 | 0.817174 | 3.780081e-52 | -8.615850e-47 |
| Msa0321620 | Msa0780570 | 0.832428 | 9.509512e-56 | -8.615850e-47 |
| Msa0338340 | Msa0780570 | 0.801418 | 9.088516e-49 | -8.615850e-47 |
| Msa0509550 | Msa0780570 | 0.806534 | 7.850392e-50 | -8.615850e-47 |
| Msa0529030 | Msa0780570 | 0.824600 | 7.392700e-54 | -8.615850e-47 |
| Msa0575320 | Msa0780570 | 0.802414 | 5.675649e-49 | -8.615850e-47 |
| Msa0583360 | Msa0780570 | -0.810833 | 9.467092e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780570 | MtrunA17_Chr5g0441921 | 96.839 | 348 | 5 | 3 | 1 | 348 | 1 | 342 | 0.0 | 682 |
| Msa0780570 | MtrunA17_Chr3g0082511 | 42.154 | 325 | 147 | 9 | 15 | 332 | 39 | 329 | 2.45e-69 | 220 |
| Msa0780570 | MtrunA17_Chr8g0353111 | 38.438 | 333 | 161 | 11 | 1 | 316 | 9 | 314 | 4.14e-62 | 201 |
| Msa0780570 | MtrunA17_Chr8g0372461 | 45.213 | 188 | 71 | 5 | 100 | 284 | 94 | 252 | 1.94e-43 | 152 |
| Msa0780570 | MtrunA17_Chr5g0404781 | 42.411 | 224 | 109 | 6 | 123 | 342 | 93 | 300 | 1.42e-41 | 147 |
| Msa0780570 | MtrunA17_Chr1g0155791 | 45.062 | 162 | 82 | 3 | 130 | 291 | 122 | 276 | 1.71e-38 | 140 |
| Msa0780570 | MtrunA17_Chr3g0142171 | 41.622 | 185 | 90 | 4 | 120 | 302 | 76 | 244 | 4.14e-35 | 129 |
| Msa0780570 | MtrunA17_Chr4g0035591 | 39.216 | 153 | 61 | 3 | 130 | 282 | 20 | 140 | 5.27e-29 | 111 |
| Msa0780570 | MtrunA17_Chr0c01g0489181 | 62.857 | 35 | 13 | 0 | 130 | 164 | 67 | 101 | 3.36e-13 | 65.5 |
| Msa0780570 | MtrunA17_Chr2g0281741 | 62.857 | 35 | 13 | 0 | 130 | 164 | 150 | 184 | 4.69e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0780570 | AT5G12330.1 | 48.817 | 338 | 122 | 12 | 3 | 327 | 9 | 308 | 2.97e-81 | 250 |
| Msa0780570 | AT5G12330.2 | 48.817 | 338 | 122 | 12 | 3 | 327 | 9 | 308 | 2.97e-81 | 250 |
| Msa0780570 | AT5G12330.4 | 49.271 | 343 | 113 | 11 | 3 | 327 | 96 | 395 | 1.02e-80 | 252 |
| Msa0780570 | AT5G66350.3 | 50.633 | 158 | 64 | 3 | 130 | 286 | 120 | 264 | 8.68e-45 | 156 |
| Msa0780570 | AT5G66350.1 | 50.633 | 158 | 64 | 3 | 130 | 286 | 120 | 264 | 1.11e-44 | 156 |
| Msa0780570 | AT5G66350.2 | 50.633 | 158 | 64 | 3 | 130 | 286 | 120 | 264 | 1.43e-44 | 156 |
| Msa0780570 | AT1G75520.1 | 41.350 | 237 | 93 | 10 | 111 | 323 | 110 | 324 | 8.44e-44 | 154 |
| Msa0780570 | AT1G19790.2 | 48.214 | 168 | 81 | 3 | 117 | 282 | 106 | 269 | 4.16e-42 | 150 |
| Msa0780570 | AT1G19790.1 | 48.214 | 168 | 81 | 3 | 117 | 282 | 106 | 269 | 4.16e-42 | 150 |
| Msa0780570 | AT3G51060.1 | 41.379 | 232 | 97 | 7 | 63 | 280 | 76 | 282 | 7.40e-42 | 150 |
| Msa0780570 | AT4G36260.1 | 41.423 | 239 | 103 | 6 | 54 | 284 | 37 | 246 | 5.16e-41 | 146 |
| Msa0780570 | AT2G18120.2 | 41.989 | 181 | 83 | 2 | 108 | 288 | 50 | 208 | 1.64e-38 | 137 |
| Msa0780570 | AT2G18120.1 | 44.048 | 168 | 74 | 2 | 121 | 288 | 63 | 210 | 3.36e-38 | 136 |
| Msa0780570 | AT3G54430.1 | 42.941 | 170 | 72 | 3 | 126 | 294 | 37 | 182 | 6.41e-38 | 134 |
| Msa0780570 | AT2G21400.2 | 40.881 | 159 | 71 | 2 | 130 | 288 | 10 | 145 | 1.81e-34 | 125 |
| Msa0780570 | AT2G21400.4 | 40.994 | 161 | 68 | 3 | 130 | 288 | 9 | 144 | 2.04e-34 | 125 |
| Msa0780570 | AT2G21400.3 | 40.000 | 160 | 56 | 2 | 130 | 288 | 10 | 130 | 3.06e-33 | 122 |
| Msa0780570 | AT2G21400.1 | 40.000 | 160 | 56 | 2 | 130 | 288 | 9 | 129 | 3.34e-33 | 121 |
| Msa0780570 | AT5G12330.3 | 43.277 | 238 | 91 | 10 | 3 | 228 | 9 | 214 | 1.11e-32 | 122 |
| Msa0780570 | AT5G33210.2 | 72.222 | 54 | 15 | 0 | 128 | 181 | 15 | 68 | 3.25e-21 | 87.8 |
| Msa0780570 | AT5G33210.1 | 72.222 | 54 | 15 | 0 | 128 | 181 | 50 | 103 | 8.74e-21 | 88.6 |
Find 161 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATACAAGTCCAACAAATT+TGG | 0.195666 | 5_2:+62485319 | Msa0780570:CDS |
| TACTACTACTACTGTCAATT+TGG | 0.208653 | 5_2:-62484503 | None:intergenic |
| CATGGTACTGGTGGGTTAAC+TGG | 0.215140 | 5_2:+62485344 | Msa0780570:CDS |
| TGTATCAAATTAACTCAAAA+TGG | 0.224679 | 5_2:+62486940 | Msa0780570:three_prime_UTR |
| TCATCTAGGTCCATTAATTA+TGG | 0.227585 | 5_2:+62484984 | Msa0780570:five_prime_UTR |
| AGGAGATTGCCTTCAGATTC+AGG | 0.251476 | 5_2:+62484819 | Msa0780570:five_prime_UTR |
| GGTGGAAGCTCCGGCGTTTC+CGG | 0.252237 | 5_2:-62484937 | None:intergenic |
| GGTTCTAGTGGTTCAACTTC+TGG | 0.271027 | 5_2:+62485575 | Msa0780570:CDS |
| TTACTTGGAGGTTCAGCTTA+TGG | 0.290172 | 5_2:+62486615 | Msa0780570:CDS |
| CTCTTTCTAAAAGGGCTTCC+TGG | 0.291013 | 5_2:-62484254 | None:intergenic |
| CCGCCACCGCTCTCGGTGTC+GGG | 0.292941 | 5_2:+62485114 | Msa0780570:CDS |
| AATCTTGAGTTTCACTTTCC+AGG | 0.304421 | 5_2:+62484236 | Msa0780570:five_prime_UTR |
| ACCAACAAGGAATTCAGTTT+TGG | 0.307252 | 5_2:+62485201 | Msa0780570:CDS |
| TGATCATGGTGTTGAGAATA+GGG | 0.324275 | 5_2:+62486443 | Msa0780570:CDS |
| CATCTCAGGTCCATAATTAA+TGG | 0.328906 | 5_2:-62484994 | None:intergenic |
| AGCTCCGGCGTTTCCGGCGG+TGG | 0.340870 | 5_2:-62484931 | None:intergenic |
| AAACCGAGAGAAAGATCTTC+TGG | 0.341866 | 5_2:-62484897 | None:intergenic |
| ACTGGTGGGTTAACTGGTTC+TGG | 0.346294 | 5_2:+62485350 | Msa0780570:CDS |
| AACCTTTCTGAGCTTCATTT+AGG | 0.352612 | 5_2:+62486477 | Msa0780570:CDS |
| GCTTCTGCTGCTGTTGCTGT+TGG | 0.363663 | 5_2:-62484541 | None:intergenic |
| GCCAAAACTGAATTCCTTGT+TGG | 0.364262 | 5_2:-62485202 | None:intergenic |
| ATGATCATGGTGTTGAGAAT+AGG | 0.379627 | 5_2:+62486442 | Msa0780570:CDS |
| CTACTCATGTTAAGAGTACT+TGG | 0.387799 | 5_2:+62485486 | Msa0780570:CDS |
| AAAGAGTGACATATGCAATA+AGG | 0.389899 | 5_2:-62486782 | None:intergenic |
| AGTCCAACAAATTTGGTTCA+TGG | 0.393800 | 5_2:+62485326 | Msa0780570:CDS |
| CTTTCTCTCGGTTTCAATGC+GGG | 0.395442 | 5_2:+62484906 | Msa0780570:five_prime_UTR |
| GATTGTTATGGTGGTGGTGG+TGG | 0.400741 | 5_2:-62485052 | None:intergenic |
| TGAGAATTAACAAACCTTGA+TGG | 0.401434 | 5_2:-62485691 | None:intergenic |
| GCGACAACGACGGTGGTTGC+TGG | 0.403885 | 5_2:+62485548 | Msa0780570:CDS |
| CCCGACACCGAGAGCGGTGG+CGG | 0.404701 | 5_2:-62485114 | None:intergenic |
| AGAAGGATTGTAGTAATAGA+AGG | 0.407133 | 5_2:+62485426 | Msa0780570:CDS |
| GAGGTAGTATCAAAGCTTCT+AGG | 0.414831 | 5_2:-62485665 | None:intergenic |
| AACGGTGGTGCTAATAGAAA+TGG | 0.417236 | 5_2:+62486519 | Msa0780570:CDS |
| CTTAACCCCGCCACCGCTCT+CGG | 0.417771 | 5_2:+62485107 | Msa0780570:CDS |
| GTACCATGAACCAAATTTGT+TGG | 0.418091 | 5_2:-62485329 | None:intergenic |
| TGGAAAGTGAAACTCAAGAT+TGG | 0.418950 | 5_2:-62484234 | None:intergenic |
| CCCGCCACCGCTCTCGGTGT+CGG | 0.421375 | 5_2:+62485113 | Msa0780570:CDS |
| GTGGTGTAGATCTTAAATGG+TGG | 0.423412 | 5_2:-62484692 | None:intergenic |
| TACTACAATCCTTCTTCGCT+TGG | 0.423666 | 5_2:-62485418 | None:intergenic |
| ACAAATTTGGTTCATGGTAC+TGG | 0.423871 | 5_2:+62485332 | Msa0780570:CDS |
| AGTGGTGGTGGAGGATTACT+TGG | 0.426078 | 5_2:+62486600 | Msa0780570:CDS |
| GGAGGGTCCGGTGGAAGCTC+CGG | 0.433703 | 5_2:-62484946 | None:intergenic |
| TTCAATGCGGGTCCCACCGC+CGG | 0.436323 | 5_2:+62484918 | Msa0780570:five_prime_UTR |
| TATTAATACCTTGCTGCACT+TGG | 0.437112 | 5_2:-62486671 | None:intergenic |
| GGGGTGGTGTAGATCTTAAA+TGG | 0.440715 | 5_2:-62484695 | None:intergenic |
| TGTTGTTCCTCCACCACTAC+TGG | 0.460746 | 5_2:-62485375 | None:intergenic |
| CAACACTCTTCTGTTTGTGC+TGG | 0.463917 | 5_2:+62484428 | Msa0780570:five_prime_UTR |
| ATATAATCCGGTGGAGGGTC+CGG | 0.467301 | 5_2:-62484958 | None:intergenic |
| TCTGAGCTTCATTTAGGTGG+TGG | 0.469113 | 5_2:+62486483 | Msa0780570:CDS |
| CATTAATTATGGACCTGAGA+TGG | 0.472294 | 5_2:+62484995 | Msa0780570:exon |
| AAGATGATGAGAGAAGAAAA+TGG | 0.473083 | 5_2:+62484313 | Msa0780570:five_prime_UTR |
| AAATGAAGCTCAGAAAGGTT+AGG | 0.477510 | 5_2:-62486474 | None:intergenic |
| ACAGTTGTTACAATAAATAA+TGG | 0.477841 | 5_2:-62487028 | None:intergenic |
| GGTTTCAAAGATTCGATGCC+GGG | 0.480661 | 5_2:+62486297 | Msa0780570:CDS |
| GATACTACCTCTAGCCATCA+AGG | 0.481688 | 5_2:+62485677 | Msa0780570:CDS |
| TGGTGTAGATCTTAAATGGT+GGG | 0.482217 | 5_2:-62484691 | None:intergenic |
| CCGGATTATATAATTCATCT+AGG | 0.485408 | 5_2:+62484970 | Msa0780570:five_prime_UTR |
| TATATGTATGTATGTAATGT+GGG | 0.488713 | 5_2:-62484716 | None:intergenic |
| TTTGTAGTAGTAATCTTTGA+GGG | 0.489014 | 5_2:+62486719 | Msa0780570:three_prime_UTR |
| GTTTGTGAAGCAATAAGTCT+AGG | 0.489243 | 5_2:-62485608 | None:intergenic |
| GTCTTCTTCATCACCAATGA+TGG | 0.489923 | 5_2:+62486545 | Msa0780570:CDS |
| TTGTGGAAACCAAGCGAAGA+AGG | 0.497994 | 5_2:+62485409 | Msa0780570:CDS |
| GGGTACCGGCTGCTAGAAGA+AGG | 0.498642 | 5_2:+62485507 | Msa0780570:CDS |
| CAAGTACTCTTAACATGAGT+AGG | 0.499272 | 5_2:-62485485 | None:intergenic |
| TCATGAGAAGGATCCATCAT+TGG | 0.499688 | 5_2:-62486558 | None:intergenic |
| GAGCTGCTTCATGATTGTTA+TGG | 0.501220 | 5_2:-62485064 | None:intergenic |
| CTTTCTGAGCTTCATTTAGG+TGG | 0.503901 | 5_2:+62486480 | Msa0780570:CDS |
| GTTGCTGGTGGTGGTTCTAG+TGG | 0.506006 | 5_2:+62485563 | Msa0780570:CDS |
| GGTGTAGATCTTAAATGGTG+GGG | 0.506247 | 5_2:-62484690 | None:intergenic |
| CTTCATGATTGTTATGGTGG+TGG | 0.507878 | 5_2:-62485058 | None:intergenic |
| GTTTGTAGTAGTAATCTTTG+AGG | 0.509027 | 5_2:+62486718 | Msa0780570:three_prime_UTR |
| AGTAGTAATCTTTGAGGGGT+GGG | 0.509354 | 5_2:+62486724 | Msa0780570:three_prime_UTR |
| GCTCCAGAAGATCTTTCTCT+CGG | 0.509911 | 5_2:+62484894 | Msa0780570:five_prime_UTR |
| GAGCTTCATTTAGGTGGTGG+TGG | 0.512059 | 5_2:+62486486 | Msa0780570:CDS |
| CCGACACCGAGAGCGGTGGC+GGG | 0.513284 | 5_2:-62485113 | None:intergenic |
| ATTGTTTCTGTTTATATGTG+TGG | 0.514255 | 5_2:-62484635 | None:intergenic |
| CCTAGATGAATTATATAATC+CGG | 0.516389 | 5_2:-62484970 | None:intergenic |
| TGGTTAAGTTGTGAGAGAGA+AGG | 0.519550 | 5_2:-62484453 | None:intergenic |
| CATGATTGTTATGGTGGTGG+TGG | 0.519577 | 5_2:-62485055 | None:intergenic |
| GGTTAAGTTGTGAGAGAGAA+GGG | 0.521022 | 5_2:-62484452 | None:intergenic |
| GGTCCCACCGCCGGAAACGC+CGG | 0.524097 | 5_2:+62484927 | Msa0780570:five_prime_UTR |
| GCTCCGGCGTTTCCGGCGGT+GGG | 0.525360 | 5_2:-62484930 | None:intergenic |
| ACGACGGTGGTTGCTGGTGG+TGG | 0.527037 | 5_2:+62485554 | Msa0780570:CDS |
| TTCTGGAGCAGCAGCACGAA+GGG | 0.528350 | 5_2:-62484880 | None:intergenic |
| CTTCATTTAGGTGGTGGTGG+TGG | 0.530531 | 5_2:+62486489 | Msa0780570:CDS |
| TAGTAGTAATCTTTGAGGGG+TGG | 0.530775 | 5_2:+62486723 | Msa0780570:three_prime_UTR |
| ATTAATTATGGACCTGAGAT+GGG | 0.532955 | 5_2:+62484996 | Msa0780570:exon |
| GCAGCTTCAAGTGGTGGTGG+AGG | 0.534400 | 5_2:+62486591 | Msa0780570:CDS |
| AAGGTATTAATAGTTATGCT+TGG | 0.534551 | 5_2:+62486682 | Msa0780570:three_prime_UTR |
| CGTTCCCTTCTTCTAGCAGC+CGG | 0.537437 | 5_2:-62485512 | None:intergenic |
| CATGGAGAAGCTGTAAGTAA+AGG | 0.540555 | 5_2:-62485143 | None:intergenic |
| GCAGCAGCTTCAAGTGGTGG+TGG | 0.540984 | 5_2:+62486588 | Msa0780570:CDS |
| GCTTCCACCGGACCCTCCAC+CGG | 0.545726 | 5_2:+62484951 | Msa0780570:five_prime_UTR |
| ACTGGTTCTGGTACCAGTAG+TGG | 0.546183 | 5_2:+62485362 | Msa0780570:CDS |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5_2:+62485452 | Msa0780570:CDS |
| AATTTGGTTCATGGTACTGG+TGG | 0.555469 | 5_2:+62485335 | Msa0780570:CDS |
| CTAACACATTTGAATACTGC+CGG | 0.555675 | 5_2:-62486333 | None:intergenic |
| ACAACAAACATACCCATCTC+AGG | 0.556410 | 5_2:-62485008 | None:intergenic |
| ACAACAACGTGTCAAGATTG+TGG | 0.558898 | 5_2:+62485392 | Msa0780570:CDS |
| TGTTAAGAGTACTTGGGTAC+CGG | 0.559268 | 5_2:+62485493 | Msa0780570:CDS |
| TGAATTATATAATCCGGTGG+AGG | 0.559774 | 5_2:-62484964 | None:intergenic |
| GTAGTAATCTTTGAGGGGTG+GGG | 0.561467 | 5_2:+62486725 | Msa0780570:three_prime_UTR |
| CTGCTTCATGATTGTTATGG+TGG | 0.564872 | 5_2:-62485061 | None:intergenic |
| CACCTAAATGAAGCTCAGAA+AGG | 0.565023 | 5_2:-62486479 | None:intergenic |
| AGGTTTCAAAGATTCGATGC+CGG | 0.567576 | 5_2:+62486296 | Msa0780570:CDS |
| GGTGGTGGAGGATTACTTGG+AGG | 0.570387 | 5_2:+62486603 | Msa0780570:CDS |
| CGCCACCGCTCTCGGTGTCG+GGG | 0.570886 | 5_2:+62485115 | Msa0780570:CDS |
| AGCAACCACCGTCGTTGTCG+CGG | 0.571590 | 5_2:-62485546 | None:intergenic |
| ATTAATAGTTATGCTTGGAG+AGG | 0.576340 | 5_2:+62486687 | Msa0780570:three_prime_UTR |
| TGCTGTTGGAGCTGTAATTG+TGG | 0.576451 | 5_2:-62484527 | None:intergenic |
| TATCAAGCTGTAGTGAAGAT+TGG | 0.579339 | 5_2:+62486393 | Msa0780570:CDS |
| TTATAGTTGTGGCTACTACA+AGG | 0.579767 | 5_2:+62484799 | Msa0780570:five_prime_UTR |
| TTCTTCGACCGCGACAACGA+CGG | 0.583043 | 5_2:+62485538 | Msa0780570:CDS |
| GTGTAGATCTTAAATGGTGG+GGG | 0.585802 | 5_2:-62484689 | None:intergenic |
| GGAAACGCCGGAGCTTCCAC+CGG | 0.586967 | 5_2:+62484939 | Msa0780570:five_prime_UTR |
| AACTCAAAATGGAAAAGCAA+AGG | 0.587402 | 5_2:+62486951 | Msa0780570:three_prime_UTR |
| GCCGGGTCAAGTACGTGCAC+CGG | 0.587973 | 5_2:+62486314 | Msa0780570:CDS |
| AAAGAAAACCTTTGAAAACA+TGG | 0.590040 | 5_2:-62486419 | None:intergenic |
| TCTGGTACCAGTAGTGGTGG+AGG | 0.592565 | 5_2:+62485368 | Msa0780570:CDS |
| CGACACCGAGAGCGGTGGCG+GGG | 0.592680 | 5_2:-62485112 | None:intergenic |
| ATTTGGTTCATGGTACTGGT+GGG | 0.594801 | 5_2:+62485336 | Msa0780570:CDS |
| GCCGGTGCACGTACTTGACC+CGG | 0.597416 | 5_2:-62486315 | None:intergenic |
| GGAAGCTCCGGCGTTTCCGG+CGG | 0.598478 | 5_2:-62484934 | None:intergenic |
| AGTATCAAAGCTTCTAGGAG+GGG | 0.599007 | 5_2:-62485660 | None:intergenic |
| CAATGATCATTCAATGACAA+AGG | 0.602234 | 5_2:+62486879 | Msa0780570:three_prime_UTR |
| TGGTGGTGGTGAAAAGAAGA+TGG | 0.603352 | 5_2:-62485035 | None:intergenic |
| AAGTACTCTTAACATGAGTA+GGG | 0.604249 | 5_2:-62485484 | None:intergenic |
| CAAGCTGTAGTGAAGATTGG+TGG | 0.605202 | 5_2:+62486396 | Msa0780570:CDS |
| TAATCCGGTGGAGGGTCCGG+TGG | 0.607835 | 5_2:-62484955 | None:intergenic |
| TATGCAGCAGCTTCAAGTGG+TGG | 0.610824 | 5_2:+62486585 | Msa0780570:CDS |
| GTAGTATCAAAGCTTCTAGG+AGG | 0.611169 | 5_2:-62485662 | None:intergenic |
| TGATGAGAGAAGAAAATGGT+CGG | 0.611312 | 5_2:+62484317 | Msa0780570:five_prime_UTR |
| CAGCACAAACAGAAGAGTGT+TGG | 0.611357 | 5_2:-62484427 | None:intergenic |
| GCAAAAGCTCCTGAATCTGA+AGG | 0.612169 | 5_2:-62484828 | None:intergenic |
| AGAGTGACATCAGTTGATGA+TGG | 0.613144 | 5_2:+62486354 | Msa0780570:CDS |
| TAGTATCAAAGCTTCTAGGA+GGG | 0.613507 | 5_2:-62485661 | None:intergenic |
| GGTTCTGGTACCAGTAGTGG+TGG | 0.613955 | 5_2:+62485365 | Msa0780570:CDS |
| TTGATCTCATAAAATGACAA+AGG | 0.617400 | 5_2:-62486859 | None:intergenic |
| TAACAAACCTTGATGGCTAG+AGG | 0.619709 | 5_2:-62485684 | None:intergenic |
| TCTTTCTCTCGGTTTCAATG+CGG | 0.620443 | 5_2:+62484905 | Msa0780570:five_prime_UTR |
| TTCGACCGCGACAACGACGG+TGG | 0.620852 | 5_2:+62485541 | Msa0780570:CDS |
| GAATTATATAATCCGGTGGA+GGG | 0.620952 | 5_2:-62484963 | None:intergenic |
| TTGTAGTAGTAATCTTTGAG+GGG | 0.621448 | 5_2:+62486720 | Msa0780570:three_prime_UTR |
| CTTCTGGAGCAGCAGCACGA+AGG | 0.625376 | 5_2:-62484881 | None:intergenic |
| TATATGTGTGGAGAGGAAGA+AGG | 0.626826 | 5_2:-62484623 | None:intergenic |
| ATATATGTATGTATGTAATG+TGG | 0.629591 | 5_2:-62484717 | None:intergenic |
| TACTCATGTTAAGAGTACTT+GGG | 0.637418 | 5_2:+62485487 | Msa0780570:CDS |
| GCTGCATAAACATCATGAGA+AGG | 0.637740 | 5_2:-62486570 | None:intergenic |
| TTCTGTTTATATGTGTGGAG+AGG | 0.640423 | 5_2:-62484630 | None:intergenic |
| GGTACCGGCTGCTAGAAGAA+GGG | 0.655941 | 5_2:+62485508 | Msa0780570:CDS |
| AACCCCGACACCGAGAGCGG+TGG | 0.656167 | 5_2:-62485117 | None:intergenic |
| GTGGCGGGGTTAAGAGAGTG+AGG | 0.668996 | 5_2:-62485098 | None:intergenic |
| ACAACGACGGTGGTTGCTGG+TGG | 0.669044 | 5_2:+62485551 | Msa0780570:CDS |
| GTTTATGCAGCAGCTTCAAG+TGG | 0.670690 | 5_2:+62486582 | Msa0780570:CDS |
| TATAACCCCGACACCGAGAG+CGG | 0.681070 | 5_2:-62485120 | None:intergenic |
| ATATGTATGTATGTAATGTG+GGG | 0.682035 | 5_2:-62484715 | None:intergenic |
| AGATGAATTATATAATCCGG+TGG | 0.684484 | 5_2:-62484967 | None:intergenic |
| TATGTATGTATGTAATGTGG+GGG | 0.705000 | 5_2:-62484714 | None:intergenic |
| GGTGGTGGTGGTAATAACAA+CGG | 0.726103 | 5_2:+62486501 | Msa0780570:CDS |
| AACAATAGAAGAAACCAACA+AGG | 0.735803 | 5_2:+62485188 | Msa0780570:CDS |
| GGTGGTGGTAATAACAACGG+TGG | 0.740902 | 5_2:+62486504 | Msa0780570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAGTTAGTTTAATTTTTT+TGG | + | chr5_2:62486208-62486227 | Msa0780570:intron | 10.0% |
| !!! | TTAGTTAGTTTAATTTTTTT+GGG | + | chr5_2:62486209-62486228 | Msa0780570:intron | 10.0% |
| !! | TAGAAAAATAGAAATAGAAA+AGG | + | chr5_2:62484349-62484368 | Msa0780570:five_prime_UTR | 15.0% |
| !! | ACCTAAAATTATATTATGAA+GGG | - | chr5_2:62485736-62485755 | None:intergenic | 15.0% |
| !! | AACCTAAAATTATATTATGA+AGG | - | chr5_2:62485737-62485756 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAAACTAGA+TGG | - | chr5_2:62485996-62486015 | None:intergenic | 15.0% |
| !!! | TAGTTAGTTTAATTTTTTTG+GGG | + | chr5_2:62486210-62486229 | Msa0780570:intron | 15.0% |
| !!! | TAATCAATTTTCTTCTATAT+AGG | + | chr5_2:62486752-62486771 | Msa0780570:three_prime_UTR | 15.0% |
| !! | TAGTAAAAAAACAAGATTAA+TGG | - | chr5_2:62486978-62486997 | None:intergenic | 15.0% |
| !!! | TTTTTTCTCTCTTTCTAAAA+GGG | - | chr5_2:62484265-62484284 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTCTCTTTCTAAA+AGG | - | chr5_2:62484266-62484285 | None:intergenic | 20.0% |
| !! | TATATGTATGTATGTAATGT+GGG | - | chr5_2:62484719-62484738 | None:intergenic | 20.0% |
| !! | ATATATGTATGTATGTAATG+TGG | - | chr5_2:62484720-62484739 | None:intergenic | 20.0% |
| !!! | ACTATAAGTTTTTTGATGTA+TGG | - | chr5_2:62484786-62484805 | None:intergenic | 20.0% |
| !!! | TCCCTTCATAATATAATTTT+AGG | + | chr5_2:62485732-62485751 | Msa0780570:intron | 20.0% |
| !! | AAATAAAAATAGTGCAAGTT+TGG | + | chr5_2:62485775-62485794 | Msa0780570:intron | 20.0% |
| !!! | TTTTGTTGATAAAATCACAA+TGG | + | chr5_2:62485848-62485867 | Msa0780570:intron | 20.0% |
| !! | TGTATCAAATTAACTCAAAA+TGG | + | chr5_2:62486940-62486959 | Msa0780570:three_prime_UTR | 20.0% |
| ! | AGAAAGAGAGAAAAAAAAGA+AGG | + | chr5_2:62484269-62484288 | Msa0780570:five_prime_UTR | 25.0% |
| !!! | ATTGTTTCTGTTTATATGTG+TGG | - | chr5_2:62484638-62484657 | None:intergenic | 25.0% |
| ! | ATATGTATGTATGTAATGTG+GGG | - | chr5_2:62484718-62484737 | None:intergenic | 25.0% |
| ! | CATCAAAAAACTTATAGTTG+TGG | + | chr5_2:62484788-62484807 | Msa0780570:five_prime_UTR | 25.0% |
| ! | CCTAGATGAATTATATAATC+CGG | - | chr5_2:62484973-62484992 | None:intergenic | 25.0% |
| !!! | ATGTTTTCATTTTCAAGACA+TGG | - | chr5_2:62485164-62485183 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATAGTGTGAATG+TGG | - | chr5_2:62485275-62485294 | None:intergenic | 25.0% |
| ! | CACTATTTGAAAAAACAACA+AGG | + | chr5_2:62485281-62485300 | Msa0780570:CDS | 25.0% |
| ! | TAATACAAGTCCAACAAATT+TGG | + | chr5_2:62485319-62485338 | Msa0780570:CDS | 25.0% |
| !! | AAAGAAAACCTTTGAAAACA+TGG | - | chr5_2:62486422-62486441 | None:intergenic | 25.0% |
| !! | AAAGGTTTTCTTTATGATCA+TGG | + | chr5_2:62486429-62486448 | Msa0780570:CDS | 25.0% |
| !! | AAGGTATTAATAGTTATGCT+TGG | + | chr5_2:62486682-62486701 | Msa0780570:three_prime_UTR | 25.0% |
| ! | TTTGTAGTAGTAATCTTTGA+GGG | + | chr5_2:62486719-62486738 | Msa0780570:three_prime_UTR | 25.0% |
| ! | TTGATCTCATAAAATGACAA+AGG | - | chr5_2:62486862-62486881 | None:intergenic | 25.0% |
| AAGATGATGAGAGAAGAAAA+TGG | + | chr5_2:62484313-62484332 | Msa0780570:five_prime_UTR | 30.0% | |
| TACTACTACTACTGTCAATT+TGG | - | chr5_2:62484506-62484525 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCTGATGATTTTC+TGG | - | chr5_2:62484575-62484594 | None:intergenic | 30.0% |
| TATGTATGTATGTAATGTGG+GGG | - | chr5_2:62484717-62484736 | None:intergenic | 30.0% | |
| AGATGAATTATATAATCCGG+TGG | - | chr5_2:62484970-62484989 | None:intergenic | 30.0% | |
| CCGGATTATATAATTCATCT+AGG | + | chr5_2:62484970-62484989 | Msa0780570:five_prime_UTR | 30.0% | |
| TCATCTAGGTCCATTAATTA+TGG | + | chr5_2:62484984-62485003 | Msa0780570:five_prime_UTR | 30.0% | |
| ATTAATTATGGACCTGAGAT+GGG | + | chr5_2:62484996-62485015 | Msa0780570:exon | 30.0% | |
| AACAATAGAAGAAACCAACA+AGG | + | chr5_2:62485188-62485207 | Msa0780570:CDS | 30.0% | |
| AGAAGGATTGTAGTAATAGA+AGG | + | chr5_2:62485426-62485445 | Msa0780570:CDS | 30.0% | |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | + | chr5_2:62485452-62485471 | Msa0780570:CDS | 30.0% |
| AAGTACTCTTAACATGAGTA+GGG | - | chr5_2:62485487-62485506 | None:intergenic | 30.0% | |
| !! | TACTCATGTTAAGAGTACTT+GGG | + | chr5_2:62485487-62485506 | Msa0780570:CDS | 30.0% |
| TGAGAATTAACAAACCTTGA+TGG | - | chr5_2:62485694-62485713 | None:intergenic | 30.0% | |
| AACTATAAACTCTGCACAAT+TGG | - | chr5_2:62485881-62485900 | None:intergenic | 30.0% | |
| !! | AGAAAATTAATGGACTAGTG+TGG | - | chr5_2:62485932-62485951 | None:intergenic | 30.0% |
| GTAGCTAGTGAGAAAATTAA+TGG | - | chr5_2:62485942-62485961 | None:intergenic | 30.0% | |
| ! | ATTTTCTCACTAGCTACATA+AGG | + | chr5_2:62485945-62485964 | Msa0780570:intron | 30.0% |
| ! | TAGATGGTTGATCTTTTCAT+TGG | - | chr5_2:62485980-62485999 | None:intergenic | 30.0% |
| ATTAATAGTTATGCTTGGAG+AGG | + | chr5_2:62486687-62486706 | Msa0780570:three_prime_UTR | 30.0% | |
| GTTTGTAGTAGTAATCTTTG+AGG | + | chr5_2:62486718-62486737 | Msa0780570:three_prime_UTR | 30.0% | |
| TTGTAGTAGTAATCTTTGAG+GGG | + | chr5_2:62486720-62486739 | Msa0780570:three_prime_UTR | 30.0% | |
| AAAGAGTGACATATGCAATA+AGG | - | chr5_2:62486785-62486804 | None:intergenic | 30.0% | |
| !! | CTTTTCTGCATTTTTCAACA+TGG | + | chr5_2:62486801-62486820 | Msa0780570:three_prime_UTR | 30.0% |
| CAATGATCATTCAATGACAA+AGG | + | chr5_2:62486879-62486898 | Msa0780570:three_prime_UTR | 30.0% | |
| AACTCAAAATGGAAAAGCAA+AGG | + | chr5_2:62486951-62486970 | Msa0780570:three_prime_UTR | 30.0% | |
| TGGAAAGTGAAACTCAAGAT+TGG | - | chr5_2:62484237-62484256 | None:intergenic | 35.0% | |
| AATCTTGAGTTTCACTTTCC+AGG | + | chr5_2:62484236-62484255 | Msa0780570:five_prime_UTR | 35.0% | |
| TGATGAGAGAAGAAAATGGT+CGG | + | chr5_2:62484317-62484336 | Msa0780570:five_prime_UTR | 35.0% | |
| ! | TTTTCGACTGGAAGAGAAAA+AGG | - | chr5_2:62484481-62484500 | None:intergenic | 35.0% |
| TTCTGTTTATATGTGTGGAG+AGG | - | chr5_2:62484633-62484652 | None:intergenic | 35.0% | |
| TGGTGTAGATCTTAAATGGT+GGG | - | chr5_2:62484694-62484713 | None:intergenic | 35.0% | |
| TTATAGTTGTGGCTACTACA+AGG | + | chr5_2:62484799-62484818 | Msa0780570:five_prime_UTR | 35.0% | |
| GAATTATATAATCCGGTGGA+GGG | - | chr5_2:62484966-62484985 | None:intergenic | 35.0% | |
| TGAATTATATAATCCGGTGG+AGG | - | chr5_2:62484967-62484986 | None:intergenic | 35.0% | |
| CATCTCAGGTCCATAATTAA+TGG | - | chr5_2:62484997-62485016 | None:intergenic | 35.0% | |
| CATTAATTATGGACCTGAGA+TGG | + | chr5_2:62484995-62485014 | Msa0780570:exon | 35.0% | |
| ! | ACCAACAAGGAATTCAGTTT+TGG | + | chr5_2:62485201-62485220 | Msa0780570:CDS | 35.0% |
| ! | AGTCCAACAAATTTGGTTCA+TGG | + | chr5_2:62485326-62485345 | Msa0780570:CDS | 35.0% |
| GTACCATGAACCAAATTTGT+TGG | - | chr5_2:62485332-62485351 | None:intergenic | 35.0% | |
| ! | ACAAATTTGGTTCATGGTAC+TGG | + | chr5_2:62485332-62485351 | Msa0780570:CDS | 35.0% |
| CAAGTACTCTTAACATGAGT+AGG | - | chr5_2:62485488-62485507 | None:intergenic | 35.0% | |
| !! | CTACTCATGTTAAGAGTACT+TGG | + | chr5_2:62485486-62485505 | Msa0780570:CDS | 35.0% |
| GTTTGTGAAGCAATAAGTCT+AGG | - | chr5_2:62485611-62485630 | None:intergenic | 35.0% | |
| ! | TAGTATCAAAGCTTCTAGGA+GGG | - | chr5_2:62485664-62485683 | None:intergenic | 35.0% |
| GATAAAATCACAATGGCTCA+AGG | + | chr5_2:62485855-62485874 | Msa0780570:intron | 35.0% | |
| !!! | GAAAGAGCTGTGTTTTGATT+TGG | + | chr5_2:62486251-62486270 | Msa0780570:intron | 35.0% |
| CTAACACATTTGAATACTGC+CGG | - | chr5_2:62486336-62486355 | None:intergenic | 35.0% | |
| TATCAAGCTGTAGTGAAGAT+TGG | + | chr5_2:62486393-62486412 | Msa0780570:CDS | 35.0% | |
| ! | ATGATCATGGTGTTGAGAAT+AGG | + | chr5_2:62486442-62486461 | Msa0780570:CDS | 35.0% |
| ! | TGATCATGGTGTTGAGAATA+GGG | + | chr5_2:62486443-62486462 | Msa0780570:CDS | 35.0% |
| AAATGAAGCTCAGAAAGGTT+AGG | - | chr5_2:62486477-62486496 | None:intergenic | 35.0% | |
| AACCTTTCTGAGCTTCATTT+AGG | + | chr5_2:62486477-62486496 | Msa0780570:CDS | 35.0% | |
| TATTAATACCTTGCTGCACT+TGG | - | chr5_2:62486674-62486693 | None:intergenic | 35.0% | |
| ! | GGTTAAGTTGTGAGAGAGAA+GGG | - | chr5_2:62484455-62484474 | None:intergenic | 40.0% |
| ! | TGGTTAAGTTGTGAGAGAGA+AGG | - | chr5_2:62484456-62484475 | None:intergenic | 40.0% |
| GACTGGAAGAGAAAAAGGTA+TGG | - | chr5_2:62484476-62484495 | None:intergenic | 40.0% | |
| !!! | GTCAATTTGGCTTTTTCGAC+TGG | - | chr5_2:62484493-62484512 | None:intergenic | 40.0% |
| TATATGTGTGGAGAGGAAGA+AGG | - | chr5_2:62484626-62484645 | None:intergenic | 40.0% | |
| GTGTAGATCTTAAATGGTGG+GGG | - | chr5_2:62484692-62484711 | None:intergenic | 40.0% | |
| GGTGTAGATCTTAAATGGTG+GGG | - | chr5_2:62484693-62484712 | None:intergenic | 40.0% | |
| GTGGTGTAGATCTTAAATGG+TGG | - | chr5_2:62484695-62484714 | None:intergenic | 40.0% | |
| ! | ATTCAGGAGCTTTTGCTGAT+TGG | + | chr5_2:62484835-62484854 | Msa0780570:five_prime_UTR | 40.0% |
| !! | TTCAGGAGCTTTTGCTGATT+GGG | + | chr5_2:62484836-62484855 | Msa0780570:five_prime_UTR | 40.0% |
| AAACCGAGAGAAAGATCTTC+TGG | - | chr5_2:62484900-62484919 | None:intergenic | 40.0% | |
| TCTTTCTCTCGGTTTCAATG+CGG | + | chr5_2:62484905-62484924 | Msa0780570:five_prime_UTR | 40.0% | |
| ACAACAAACATACCCATCTC+AGG | - | chr5_2:62485011-62485030 | None:intergenic | 40.0% | |
| CTTCATGATTGTTATGGTGG+TGG | - | chr5_2:62485061-62485080 | None:intergenic | 40.0% | |
| CTGCTTCATGATTGTTATGG+TGG | - | chr5_2:62485064-62485083 | None:intergenic | 40.0% | |
| GAGCTGCTTCATGATTGTTA+TGG | - | chr5_2:62485067-62485086 | None:intergenic | 40.0% | |
| CATGGAGAAGCTGTAAGTAA+AGG | - | chr5_2:62485146-62485165 | None:intergenic | 40.0% | |
| GCCAAAACTGAATTCCTTGT+TGG | - | chr5_2:62485205-62485224 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTTGTTGCTGT+TGG | - | chr5_2:62485247-62485266 | None:intergenic | 40.0% |
| ! | AATTTGGTTCATGGTACTGG+TGG | + | chr5_2:62485335-62485354 | Msa0780570:CDS | 40.0% |
| !! | ATTTGGTTCATGGTACTGGT+GGG | + | chr5_2:62485336-62485355 | Msa0780570:CDS | 40.0% |
| ACAACAACGTGTCAAGATTG+TGG | + | chr5_2:62485392-62485411 | Msa0780570:CDS | 40.0% | |
| TACTACAATCCTTCTTCGCT+TGG | - | chr5_2:62485421-62485440 | None:intergenic | 40.0% | |
| !! | TGTTAAGAGTACTTGGGTAC+CGG | + | chr5_2:62485493-62485512 | Msa0780570:CDS | 40.0% |
| ! | AGTATCAAAGCTTCTAGGAG+GGG | - | chr5_2:62485663-62485682 | None:intergenic | 40.0% |
| GTAGTATCAAAGCTTCTAGG+AGG | - | chr5_2:62485665-62485684 | None:intergenic | 40.0% | |
| GAGGTAGTATCAAAGCTTCT+AGG | - | chr5_2:62485668-62485687 | None:intergenic | 40.0% | |
| ! | TAACAAACCTTGATGGCTAG+AGG | - | chr5_2:62485687-62485706 | None:intergenic | 40.0% |
| GTGTGGCTAACTAGTATAAC+TGG | - | chr5_2:62485915-62485934 | None:intergenic | 40.0% | |
| GTATTAATGTGTGCAGATGC+AGG | + | chr5_2:62486276-62486295 | Msa0780570:intron | 40.0% | |
| AGGTTTCAAAGATTCGATGC+CGG | + | chr5_2:62486296-62486315 | Msa0780570:CDS | 40.0% | |
| !! | AGAGTGACATCAGTTGATGA+TGG | + | chr5_2:62486354-62486373 | Msa0780570:CDS | 40.0% |
| !! | ATTGGTGGCCATGTTTTCAA+AGG | + | chr5_2:62486411-62486430 | Msa0780570:CDS | 40.0% |
| CACCTAAATGAAGCTCAGAA+AGG | - | chr5_2:62486482-62486501 | None:intergenic | 40.0% | |
| CTTTCTGAGCTTCATTTAGG+TGG | + | chr5_2:62486480-62486499 | Msa0780570:CDS | 40.0% | |
| ! | AACGGTGGTGCTAATAGAAA+TGG | + | chr5_2:62486519-62486538 | Msa0780570:CDS | 40.0% |
| GTCTTCTTCATCACCAATGA+TGG | + | chr5_2:62486545-62486564 | Msa0780570:CDS | 40.0% | |
| TCATGAGAAGGATCCATCAT+TGG | - | chr5_2:62486561-62486580 | None:intergenic | 40.0% | |
| GCTGCATAAACATCATGAGA+AGG | - | chr5_2:62486573-62486592 | None:intergenic | 40.0% | |
| TTACTTGGAGGTTCAGCTTA+TGG | + | chr5_2:62486615-62486634 | Msa0780570:CDS | 40.0% | |
| ! | ATGTTTTTCCAAGTGCAGCA+AGG | + | chr5_2:62486663-62486682 | Msa0780570:three_prime_UTR | 40.0% |
| ! | TAGTAGTAATCTTTGAGGGG+TGG | + | chr5_2:62486723-62486742 | Msa0780570:three_prime_UTR | 40.0% |
| ! | AGTAGTAATCTTTGAGGGGT+GGG | + | chr5_2:62486724-62486743 | Msa0780570:three_prime_UTR | 40.0% |
| ! | CTCTTTCTAAAAGGGCTTCC+TGG | - | chr5_2:62484257-62484276 | None:intergenic | 45.0% |
| ! | CAGCACAAACAGAAGAGTGT+TGG | - | chr5_2:62484430-62484449 | None:intergenic | 45.0% |
| CAACACTCTTCTGTTTGTGC+TGG | + | chr5_2:62484428-62484447 | Msa0780570:five_prime_UTR | 45.0% | |
| TGCTGTTGGAGCTGTAATTG+TGG | - | chr5_2:62484530-62484549 | None:intergenic | 45.0% | |
| GGGGTGGTGTAGATCTTAAA+TGG | - | chr5_2:62484698-62484717 | None:intergenic | 45.0% | |
| GTATGTATGTAATGTGGGGG+TGG | - | chr5_2:62484714-62484733 | None:intergenic | 45.0% | |
| AGGAGATTGCCTTCAGATTC+AGG | + | chr5_2:62484819-62484838 | Msa0780570:five_prime_UTR | 45.0% | |
| GCAAAAGCTCCTGAATCTGA+AGG | - | chr5_2:62484831-62484850 | None:intergenic | 45.0% | |
| GCTCCAGAAGATCTTTCTCT+CGG | + | chr5_2:62484894-62484913 | Msa0780570:five_prime_UTR | 45.0% | |
| CTTTCTCTCGGTTTCAATGC+GGG | + | chr5_2:62484906-62484925 | Msa0780570:five_prime_UTR | 45.0% | |
| !! | TGGTGGTGGTGAAAAGAAGA+TGG | - | chr5_2:62485038-62485057 | None:intergenic | 45.0% |
| !! | CATGATTGTTATGGTGGTGG+TGG | - | chr5_2:62485058-62485077 | None:intergenic | 45.0% |
| TTGTGGAAACCAAGCGAAGA+AGG | + | chr5_2:62485409-62485428 | Msa0780570:CDS | 45.0% | |
| ! | GGTTCTAGTGGTTCAACTTC+TGG | + | chr5_2:62485575-62485594 | Msa0780570:CDS | 45.0% |
| GATACTACCTCTAGCCATCA+AGG | + | chr5_2:62485677-62485696 | Msa0780570:CDS | 45.0% | |
| GGTTTCAAAGATTCGATGCC+GGG | + | chr5_2:62486297-62486316 | Msa0780570:CDS | 45.0% | |
| CAAGCTGTAGTGAAGATTGG+TGG | + | chr5_2:62486396-62486415 | Msa0780570:CDS | 45.0% | |
| TCTGAGCTTCATTTAGGTGG+TGG | + | chr5_2:62486483-62486502 | Msa0780570:CDS | 45.0% | |
| !! | GGTGGTGGTGGTAATAACAA+CGG | + | chr5_2:62486501-62486520 | Msa0780570:CDS | 45.0% |
| GTTTATGCAGCAGCTTCAAG+TGG | + | chr5_2:62486582-62486601 | Msa0780570:CDS | 45.0% | |
| ! | GTAGTAATCTTTGAGGGGTG+GGG | + | chr5_2:62486725-62486744 | Msa0780570:three_prime_UTR | 45.0% |
| ATATAATCCGGTGGAGGGTC+CGG | - | chr5_2:62484961-62484980 | None:intergenic | 50.0% | |
| !! | GATTGTTATGGTGGTGGTGG+TGG | - | chr5_2:62485055-62485074 | None:intergenic | 50.0% |
| !! | CATGGTACTGGTGGGTTAAC+TGG | + | chr5_2:62485344-62485363 | Msa0780570:CDS | 50.0% |
| !! | ACTGGTGGGTTAACTGGTTC+TGG | + | chr5_2:62485350-62485369 | Msa0780570:CDS | 50.0% |
| !! | ACTGGTTCTGGTACCAGTAG+TGG | + | chr5_2:62485362-62485381 | Msa0780570:CDS | 50.0% |
| TGTTGTTCCTCCACCACTAC+TGG | - | chr5_2:62485378-62485397 | None:intergenic | 50.0% | |
| ! | GAGCTTCATTTAGGTGGTGG+TGG | + | chr5_2:62486486-62486505 | Msa0780570:CDS | 50.0% |
| !! | CTTCATTTAGGTGGTGGTGG+TGG | + | chr5_2:62486489-62486508 | Msa0780570:CDS | 50.0% |
| ! | GGTGGTGGTAATAACAACGG+TGG | + | chr5_2:62486504-62486523 | Msa0780570:CDS | 50.0% |
| TATGCAGCAGCTTCAAGTGG+TGG | + | chr5_2:62486585-62486604 | Msa0780570:CDS | 50.0% | |
| !! | AGTGGTGGTGGAGGATTACT+TGG | + | chr5_2:62486600-62486619 | Msa0780570:CDS | 50.0% |
| GCTTCTGCTGCTGTTGCTGT+TGG | - | chr5_2:62484544-62484563 | None:intergenic | 55.0% | |
| !! | TTCTGGAGCAGCAGCACGAA+GGG | - | chr5_2:62484883-62484902 | None:intergenic | 55.0% |
| !! | TGTTATGGTGGTGGTGGTGG+TGG | - | chr5_2:62485052-62485071 | None:intergenic | 55.0% |
| TATAACCCCGACACCGAGAG+CGG | - | chr5_2:62485123-62485142 | None:intergenic | 55.0% | |
| ! | GGTTCTGGTACCAGTAGTGG+TGG | + | chr5_2:62485365-62485384 | Msa0780570:CDS | 55.0% |
| TCTGGTACCAGTAGTGGTGG+AGG | + | chr5_2:62485368-62485387 | Msa0780570:CDS | 55.0% | |
| !! | GGTACCGGCTGCTAGAAGAA+GGG | + | chr5_2:62485508-62485527 | Msa0780570:CDS | 55.0% |
| CGTTCCCTTCTTCTAGCAGC+CGG | - | chr5_2:62485515-62485534 | None:intergenic | 55.0% | |
| TTCTTCGACCGCGACAACGA+CGG | + | chr5_2:62485538-62485557 | Msa0780570:CDS | 55.0% | |
| !! | GTTGCTGGTGGTGGTTCTAG+TGG | + | chr5_2:62485563-62485582 | Msa0780570:CDS | 55.0% |
| !! | GGTGGTGGAGGATTACTTGG+AGG | + | chr5_2:62486603-62486622 | Msa0780570:CDS | 55.0% |
| !! | CTTCTGGAGCAGCAGCACGA+AGG | - | chr5_2:62484884-62484903 | None:intergenic | 60.0% |
| ! | GTGGCGGGGTTAAGAGAGTG+AGG | - | chr5_2:62485101-62485120 | None:intergenic | 60.0% |
| !! | GGGTACCGGCTGCTAGAAGA+AGG | + | chr5_2:62485507-62485526 | Msa0780570:CDS | 60.0% |
| AGCAACCACCGTCGTTGTCG+CGG | - | chr5_2:62485549-62485568 | None:intergenic | 60.0% | |
| ACAACGACGGTGGTTGCTGG+TGG | + | chr5_2:62485551-62485570 | Msa0780570:CDS | 60.0% | |
| GCAGCAGCTTCAAGTGGTGG+TGG | + | chr5_2:62486588-62486607 | Msa0780570:CDS | 60.0% | |
| !! | GCAGCTTCAAGTGGTGGTGG+AGG | + | chr5_2:62486591-62486610 | Msa0780570:CDS | 60.0% |
| TTCAATGCGGGTCCCACCGC+CGG | + | chr5_2:62484918-62484937 | Msa0780570:five_prime_UTR | 65.0% | |
| GGTGGAAGCTCCGGCGTTTC+CGG | - | chr5_2:62484940-62484959 | None:intergenic | 65.0% | |
| GGAAACGCCGGAGCTTCCAC+CGG | + | chr5_2:62484939-62484958 | Msa0780570:five_prime_UTR | 65.0% | |
| TAATCCGGTGGAGGGTCCGG+TGG | - | chr5_2:62484958-62484977 | None:intergenic | 65.0% | |
| CTTAACCCCGCCACCGCTCT+CGG | + | chr5_2:62485107-62485126 | Msa0780570:CDS | 65.0% | |
| TTCGACCGCGACAACGACGG+TGG | + | chr5_2:62485541-62485560 | Msa0780570:CDS | 65.0% | |
| GCGACAACGACGGTGGTTGC+TGG | + | chr5_2:62485548-62485567 | Msa0780570:CDS | 65.0% | |
| ACGACGGTGGTTGCTGGTGG+TGG | + | chr5_2:62485554-62485573 | Msa0780570:CDS | 65.0% | |
| GCCGGGTCAAGTACGTGCAC+CGG | + | chr5_2:62486314-62486333 | Msa0780570:CDS | 65.0% | |
| GCCGGTGCACGTACTTGACC+CGG | - | chr5_2:62486318-62486337 | None:intergenic | 65.0% | |
| GGAAGCTCCGGCGTTTCCGG+CGG | - | chr5_2:62484937-62484956 | None:intergenic | 70.0% | |
| GGAGGGTCCGGTGGAAGCTC+CGG | - | chr5_2:62484949-62484968 | None:intergenic | 70.0% | |
| GCTTCCACCGGACCCTCCAC+CGG | + | chr5_2:62484951-62484970 | Msa0780570:five_prime_UTR | 70.0% | |
| AACCCCGACACCGAGAGCGG+TGG | - | chr5_2:62485120-62485139 | None:intergenic | 70.0% | |
| GGTCCCACCGCCGGAAACGC+CGG | + | chr5_2:62484927-62484946 | Msa0780570:five_prime_UTR | 75.0% | |
| GCTCCGGCGTTTCCGGCGGT+GGG | - | chr5_2:62484933-62484952 | None:intergenic | 75.0% | |
| AGCTCCGGCGTTTCCGGCGG+TGG | - | chr5_2:62484934-62484953 | None:intergenic | 75.0% | |
| CGACACCGAGAGCGGTGGCG+GGG | - | chr5_2:62485115-62485134 | None:intergenic | 75.0% | |
| CCGACACCGAGAGCGGTGGC+GGG | - | chr5_2:62485116-62485135 | None:intergenic | 75.0% | |
| ! | CCCGCCACCGCTCTCGGTGT+CGG | + | chr5_2:62485113-62485132 | Msa0780570:CDS | 75.0% |
| CCCGACACCGAGAGCGGTGG+CGG | - | chr5_2:62485117-62485136 | None:intergenic | 75.0% | |
| !! | CCGCCACCGCTCTCGGTGTC+GGG | + | chr5_2:62485114-62485133 | Msa0780570:CDS | 75.0% |
| !! | CGCCACCGCTCTCGGTGTCG+GGG | + | chr5_2:62485115-62485134 | Msa0780570:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 62484228 | 62487046 | 62484228 | ID=Msa0780570;Name=Msa0780570 |
| chr5_2 | mRNA | 62484228 | 62487046 | 62484228 | ID=Msa0780570-mRNA-1;Parent=Msa0780570;Name=Msa0780570-mRNA-1;_AED=0.00;_eAED=0.00;_QI=786|1|1|1|1|1|2|393|348 |
| chr5_2 | exon | 62484228 | 62485698 | 62484228 | ID=Msa0780570-mRNA-1:exon:18484;Parent=Msa0780570-mRNA-1 |
| chr5_2 | exon | 62486292 | 62487046 | 62486292 | ID=Msa0780570-mRNA-1:exon:18485;Parent=Msa0780570-mRNA-1 |
| chr5_2 | five_prime_UTR | 62484228 | 62485013 | 62484228 | ID=Msa0780570-mRNA-1:five_prime_utr;Parent=Msa0780570-mRNA-1 |
| chr5_2 | CDS | 62485014 | 62485698 | 62485014 | ID=Msa0780570-mRNA-1:cds;Parent=Msa0780570-mRNA-1 |
| chr5_2 | CDS | 62486292 | 62486653 | 62486292 | ID=Msa0780570-mRNA-1:cds;Parent=Msa0780570-mRNA-1 |
| chr5_2 | three_prime_UTR | 62486654 | 62487046 | 62486654 | ID=Msa0780570-mRNA-1:three_prime_utr;Parent=Msa0780570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
