AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816560 MtrunA17_Chr5g0435111 97.866 328 6 1 1 327 1 328 0.0 650
Msa0816560 MtrunA17_Chr8g0378201 50.000 148 65 1 2 140 5 152 3.53e-43 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 114 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCATCATGGTGGTGGTTT+GGG 0.171912 5_3:-51044501 Msa0816560:CDS
AATTGGAATTAGAGGCTATT+TGG 0.208401 5_3:-51044812 Msa0816560:CDS
TCATTGGAATGCTGCTTTCC+TGG 0.221819 5_3:-51044334 Msa0816560:three_prime_UTR
GGGATGGGTGGTGCTGGATT+AGG 0.238214 5_3:-51044543 Msa0816560:CDS
GTTGCATCATGGTGGTGGTT+TGG 0.285567 5_3:-51044502 Msa0816560:CDS
TGAAGAAGAATTGAAGAGAT+TGG 0.292149 5_3:-51044982 Msa0816560:CDS
TTTGAAATTGAGGGAGGTTA+TGG 0.299822 5_3:-51044949 Msa0816560:CDS
TTGAAGGAAATGTCTGATTC+CGG 0.311793 5_3:-51044229 Msa0816560:three_prime_UTR
AATGATGGGATGGGTGGTGC+TGG 0.316086 5_3:-51044549 Msa0816560:CDS
GAGAAGAGAGGAAGAGGGAG+AGG 0.326670 5_3:-51044920 Msa0816560:CDS
CCATCATTAAGTTTAGGTTT+AGG 0.332274 5_3:+51045175 None:intergenic
CTATTACCATCATTAAGTTT+AGG 0.335052 5_3:+51045169 None:intergenic
GGATGGGTGGTGCTGGATTA+GGG 0.339968 5_3:-51044542 Msa0816560:CDS
ATTGGAATTAGAGGCTATTT+GGG 0.360018 5_3:-51044811 Msa0816560:CDS
GAGGAAGGTGGAAGAGAAGA+TGG 0.360691 5_3:-51044724 Msa0816560:CDS
AGGAGGTTGAGAAGAGGGTT+AGG 0.367802 5_3:-51044782 Msa0816560:CDS
GGAATGATGGGGTTATTCAT+TGG 0.368084 5_3:-51045246 Msa0816560:CDS
TGAAGGAAATGTCTGATTCC+GGG 0.368286 5_3:-51044228 Msa0816560:three_prime_UTR
CTAAGCTTTAAGAATAGTAT+TGG 0.368846 5_3:-51044109 Msa0816560:three_prime_UTR
AGGAGAAAGAGGAGTGGAAA+AGG 0.372350 5_3:-51044887 Msa0816560:CDS
GATGATGGAGTGGATTTGTT+TGG 0.375284 5_3:+51045577 None:intergenic
ATTGAAGAGATTGGGAGTTA+AGG 0.379786 5_3:-51044973 Msa0816560:CDS
AACATGCGTCATCAGTATAT+TGG 0.382505 5_3:-51045310 Msa0816560:CDS
AATGCAGGTTCTTGGTGTTA+TGG 0.384156 5_3:-51044604 Msa0816560:CDS
GGAAGAGGGAGAAAGGGAAC+CGG 0.386037 5_3:-51044206 Msa0816560:three_prime_UTR
GATGGAGTGGAGGGAGAAGA+TGG 0.388023 5_3:-51044691 Msa0816560:CDS
TACTCCGAACTTCACCGTTC+AGG 0.388339 5_3:-51045469 Msa0816560:CDS
TGAAAAGATTGATTCTTCAT+TGG 0.395915 5_3:-51044350 Msa0816560:three_prime_UTR
CATAATCAAATGCAGGTTCT+TGG 0.399935 5_3:-51044612 Msa0816560:CDS
GAATGATGGGGTTATTCATT+GGG 0.402665 5_3:-51045245 Msa0816560:CDS
GGAAGAGAAGATGGAGGAAG+AGG 0.411440 5_3:-51044715 Msa0816560:CDS
GGGAGTGTTGTTGTGGGGAG+AGG 0.413036 5_3:-51044836 Msa0816560:CDS
GAAGAAGAATTGAAGAGATT+GGG 0.413686 5_3:-51044981 Msa0816560:CDS
GAAGAGGAGGAGGAGGAAGG+TGG 0.415213 5_3:-51044736 Msa0816560:CDS
TTCCCTTTCTCCCTCTTCCC+CGG 0.420607 5_3:+51044210 None:intergenic
GAAGATGGAGGAAGAGGAGA+TGG 0.423990 5_3:-51044709 Msa0816560:CDS
CAACCACCTTTCCTTTCAAA+TGG 0.425438 5_3:-51045363 Msa0816560:CDS
GGAGAAGAGGAGGAGGAGGA+AGG 0.434983 5_3:-51044739 Msa0816560:CDS
ATGCCCAGCTGTTTCATGTT+GGG 0.440573 5_3:+51044145 None:intergenic
TTGTTGTGGGGAGAGGGAAT+TGG 0.442224 5_3:-51044829 Msa0816560:CDS
TGAAGAGAGAAGAGAGGAAG+AGG 0.442759 5_3:-51044926 Msa0816560:CDS
TGGTTCGGGGAATGATGGGA+TGG 0.445450 5_3:-51044559 Msa0816560:CDS
GGAAGAGGAGATGGAGTGGA+GGG 0.450080 5_3:-51044700 Msa0816560:CDS
AGGAGGAGAAGAGGAGGAGG+AGG 0.451794 5_3:-51044743 Msa0816560:CDS
GAAGAAGGAGGTTGAGAAGA+GGG 0.452874 5_3:-51044787 Msa0816560:CDS
ATTCCGGGGAAGAGGGAGAA+AGG 0.453797 5_3:-51044213 Msa0816560:three_prime_UTR
CCTTTCCTTTCAAATGGTCG+TGG 0.454542 5_3:-51045357 Msa0816560:CDS
CATGGATTCAATTGGAATGA+TGG 0.455223 5_3:-51045259 Msa0816560:CDS
AGGAGCTTGAGGAGGAGAAG+AGG 0.455597 5_3:-51044752 Msa0816560:CDS
GGAAAAGGGGAGTGTTGTTG+TGG 0.457194 5_3:-51044843 Msa0816560:CDS
ATGGATTCAATTGGAATGAT+GGG 0.466532 5_3:-51045258 Msa0816560:CDS
ACCTGATGCTAGTTCTCCTT+CGG 0.467837 5_3:-51044469 Msa0816560:CDS
AGGAAGAGGAGATGGAGTGG+AGG 0.468289 5_3:-51044701 Msa0816560:CDS
AAGATTCAATCCAGTGATCA+TGG 0.469707 5_3:-51045277 Msa0816560:CDS
TTGAGGAGGAGAAGAGGAGG+AGG 0.474734 5_3:-51044746 Msa0816560:CDS
AGAGGCTATTTGGGCGAAGA+AGG 0.475459 5_3:-51044802 Msa0816560:CDS
GAAATGGCATTGCTCGATCC+AGG 0.475582 5_3:+51044316 None:intergenic
GAAAAGGGGAGTGTTGTTGT+GGG 0.475875 5_3:-51044842 Msa0816560:CDS
GTTTCTGCTGTTAATTGTGT+TGG 0.477242 5_3:-51043977 Msa0816560:three_prime_UTR
GGAGAGGGAATTGGAATTAG+AGG 0.478037 5_3:-51044820 Msa0816560:CDS
GGAGTGTTGTTGTGGGGAGA+GGG 0.483485 5_3:-51044835 Msa0816560:CDS
GACTCTGATGATTCTGATGA+TGG 0.487037 5_3:-51045032 Msa0816560:CDS
TGGAGGAAGAGGAGATGGAG+TGG 0.487474 5_3:-51044704 Msa0816560:CDS
CCAGTGATCATGGATTCAAT+TGG 0.489192 5_3:-51045267 Msa0816560:CDS
CGAAGAAGGAGGTTGAGAAG+AGG 0.489392 5_3:-51044788 Msa0816560:CDS
CCAATTGAATCCATGATCAC+TGG 0.492916 5_3:+51045267 None:intergenic
TGTTCCTGAACGGTGAAGTT+CGG 0.493561 5_3:+51045465 None:intergenic
TGCATCATGGTGGTGGTTTG+GGG 0.496478 5_3:-51044500 Msa0816560:CDS
TCGGGGAATGATGGGATGGG+TGG 0.500258 5_3:-51044555 Msa0816560:CDS
AGAAGAGAGGAAGAGGGAGA+GGG 0.503467 5_3:-51044919 Msa0816560:CDS
AATGTCTGATTCCGGGGAAG+AGG 0.506782 5_3:-51044221 Msa0816560:three_prime_UTR
GGTTCGGGGAATGATGGGAT+GGG 0.514502 5_3:-51044558 Msa0816560:CDS
GAAGAGAGAAGAGAGGAAGA+GGG 0.514578 5_3:-51044925 Msa0816560:CDS
AGCTTGAGGAGGAGAAGAGG+AGG 0.514591 5_3:-51044749 Msa0816560:CDS
CAGGTGTTGCATCATGGTGG+TGG 0.520118 5_3:-51044507 Msa0816560:CDS
TGTGCCCAACATGAAACAGC+TGG 0.524647 5_3:-51044149 Msa0816560:three_prime_UTR
TTCCGGGGAAGAGGGAGAAA+GGG 0.526364 5_3:-51044212 Msa0816560:three_prime_UTR
GAAGAGGGTTAGGTTAGAGA+AGG 0.529201 5_3:-51044772 Msa0816560:CDS
CATTTGAAAGGAAAGGTGGT+TGG 0.531277 5_3:+51045364 None:intergenic
TTATGGTGAAGAGAGAAGAG+AGG 0.532365 5_3:-51044932 Msa0816560:CDS
GAAAGAGGAGTGGAAAAGGA+AGG 0.534415 5_3:-51044883 Msa0816560:CDS
GTTAGAGAAGGAGCTTGAGG+AGG 0.535819 5_3:-51044760 Msa0816560:CDS
CCTAAACCTAAACTTAATGA+TGG 0.536424 5_3:-51045175 Msa0816560:intron
AGGTGGTTGGATCGTGAAGA+TGG 0.539557 5_3:+51045377 None:intergenic
ATTAGGGACATTGCCGACTC+AGG 0.541810 5_3:-51044526 Msa0816560:CDS
ATGTCTGATTCCGGGGAAGA+GGG 0.543583 5_3:-51044220 Msa0816560:three_prime_UTR
TCCGAAGGAGAACTAGCATC+AGG 0.544284 5_3:+51044468 None:intergenic
TATGCCCAGCTGTTTCATGT+TGG 0.549210 5_3:+51044144 None:intergenic
TTGGGCACATCTACCAGTCC+AGG 0.552967 5_3:+51044163 None:intergenic
TAGGTTAGAGAAGGAGCTTG+AGG 0.554470 5_3:-51044763 Msa0816560:CDS
TCGCGCCACGACCATTTGAA+AGG 0.557446 5_3:+51045352 None:intergenic
GAAGGTGGAAGAGAAGATGG+AGG 0.560726 5_3:-51044721 Msa0816560:CDS
GCGTTGACATGATCGGCGAT+TGG 0.586294 5_3:+51045406 None:intergenic
CCATGATGCAACACCTGAGT+CGG 0.586713 5_3:+51044513 None:intergenic
CCGACTCAGGTGTTGCATCA+TGG 0.587073 5_3:-51044513 Msa0816560:CDS
GTGAACGGCGTTGACATGAT+CGG 0.590279 5_3:+51045399 None:intergenic
GGAGTGGAGGGAGAAGATGG+TGG 0.591696 5_3:-51044688 Msa0816560:CDS
GGCTATTTGGGCGAAGAAGG+AGG 0.592296 5_3:-51044799 Msa0816560:CDS
GGCGTGTCATAATCAAATGC+AGG 0.593011 5_3:-51044619 Msa0816560:CDS
CCACGACCATTTGAAAGGAA+AGG 0.603222 5_3:+51045357 None:intergenic
CGACCATTTGAAAGGAAAGG+TGG 0.605195 5_3:+51045360 None:intergenic
GATGGTGATGATGACGGTGA+TGG 0.605527 5_3:-51045014 Msa0816560:CDS
GTTTAGGGAGTGTTCCTGAA+CGG 0.611995 5_3:+51045455 None:intergenic
TGTTGTTTCACGAACACATG+AGG 0.613528 5_3:+51045611 None:intergenic
GAAGGAAATGTCTGATTCCG+GGG 0.627172 5_3:-51044227 Msa0816560:three_prime_UTR
GTGCCCAACATGAAACAGCT+GGG 0.627425 5_3:-51044148 Msa0816560:three_prime_UTR
TGGATTCAATTGGAATGATG+GGG 0.630510 5_3:-51045257 Msa0816560:CDS
AAAAGGGGAGTGTTGTTGTG+GGG 0.631792 5_3:-51044841 Msa0816560:CDS
GATTTCTACATGAACTCCGA+AGG 0.642098 5_3:+51044453 None:intergenic
TCTGATGATGGTGATGATGA+CGG 0.663950 5_3:-51045020 Msa0816560:CDS
TGGATCGTGAAGATGGTGAA+CGG 0.702008 5_3:+51045384 None:intergenic
ACTCAGGTGTTGCATCATGG+TGG 0.707815 5_3:-51044510 Msa0816560:CDS
GATGATGCAGATGCATGCTG+AGG 0.710436 5_3:-51044640 Msa0816560:CDS
ATTGTTGGAAGGTTTCGTTG+TGG 0.779594 5_3:+51045541 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATACAAGAAAAAAAAGAAA+TGG + chr5_3:51045365-51045384 None:intergenic 15.0%
!! GAAACAGATAAAAAAAATTA+TGG + chr5_3:51045662-51045681 None:intergenic 15.0%
!! AATACAAGAAAAAAAAGAAA+TGG + chr5_3:51045365-51045384 None:intergenic 15.0%
!! GAAACAGATAAAAAAAATTA+TGG + chr5_3:51045662-51045681 None:intergenic 15.0%
!!! CTTAATTATAAACGTGTTTT+TGG - chr5_3:51044448-51044467 Msa0816560:exon 20.0%
!!! TAACTTTCTTTTTGTGATTT+AGG - chr5_3:51044588-51044607 Msa0816560:CDS 20.0%
!!! AACTTTCTTTTTGTGATTTA+GGG - chr5_3:51044589-51044608 Msa0816560:CDS 20.0%
!!! AAATGCTTTTTACATCTTTT+CGG + chr5_3:51045591-51045610 None:intergenic 20.0%
!!! CTTAATTATAAACGTGTTTT+TGG - chr5_3:51044448-51044467 Msa0816560:exon 20.0%
!!! TAACTTTCTTTTTGTGATTT+AGG - chr5_3:51044588-51044607 Msa0816560:CDS 20.0%
!!! AACTTTCTTTTTGTGATTTA+GGG - chr5_3:51044589-51044608 Msa0816560:CDS 20.0%
!!! AAATGCTTTTTACATCTTTT+CGG + chr5_3:51045591-51045610 None:intergenic 20.0%
!!! ATGAGGTTTTTTTAACAACA+AGG + chr5_3:51044037-51044056 None:intergenic 25.0%
!!! TTGGTTTGAACTTTTTTTCA+CGG + chr5_3:51044240-51044259 None:intergenic 25.0%
! CTATTACCATCATTAAGTTT+AGG + chr5_3:51044496-51044515 None:intergenic 25.0%
!!! AGTTAAGGTTTTGAAATTGA+GGG - chr5_3:51044704-51044723 Msa0816560:CDS 25.0%
!! TGAAAAGATTGATTCTTCAT+TGG - chr5_3:51045312-51045331 Msa0816560:CDS 25.0%
!! CATTTTTCATAAGCTTTTGA+AGG - chr5_3:51045417-51045436 Msa0816560:CDS 25.0%
!!! CTAAGCTTTAAGAATAGTAT+TGG - chr5_3:51045553-51045572 Msa0816560:five_prime_UTR 25.0%
!!! AGATGTAAAAAGCATTTTGT+TGG - chr5_3:51045594-51045613 Msa0816560:five_prime_UTR 25.0%
!!! ATGAGGTTTTTTTAACAACA+AGG + chr5_3:51044037-51044056 None:intergenic 25.0%
!!! TTGGTTTGAACTTTTTTTCA+CGG + chr5_3:51044240-51044259 None:intergenic 25.0%
! CTATTACCATCATTAAGTTT+AGG + chr5_3:51044496-51044515 None:intergenic 25.0%
!!! AGTTAAGGTTTTGAAATTGA+GGG - chr5_3:51044704-51044723 Msa0816560:CDS 25.0%
!! TGAAAAGATTGATTCTTCAT+TGG - chr5_3:51045312-51045331 Msa0816560:CDS 25.0%
!! CATTTTTCATAAGCTTTTGA+AGG - chr5_3:51045417-51045436 Msa0816560:CDS 25.0%
!!! CTAAGCTTTAAGAATAGTAT+TGG - chr5_3:51045553-51045572 Msa0816560:five_prime_UTR 25.0%
!!! AGATGTAAAAAGCATTTTGT+TGG - chr5_3:51045594-51045613 Msa0816560:five_prime_UTR 25.0%
!!! AGGTTTTTTTAACAACAAGG+AGG + chr5_3:51044034-51044053 None:intergenic 30.0%
!! TTCGGAGTATTTTGTTAAGA+GGG + chr5_3:51044182-51044201 None:intergenic 30.0%
!!! TGGTTTGAACTTTTTTTCAC+GGG + chr5_3:51044239-51044258 None:intergenic 30.0%
ATGGATTCAATTGGAATGAT+GGG - chr5_3:51044404-51044423 Msa0816560:three_prime_UTR 30.0%
! CCATCATTAAGTTTAGGTTT+AGG + chr5_3:51044490-51044509 None:intergenic 30.0%
CCTAAACCTAAACTTAATGA+TGG - chr5_3:51044487-51044506 Msa0816560:CDS 30.0%
TGAAGAAGAATTGAAGAGAT+TGG - chr5_3:51044680-51044699 Msa0816560:CDS 30.0%
GAAGAAGAATTGAAGAGATT+GGG - chr5_3:51044681-51044700 Msa0816560:CDS 30.0%
!!! GAGTTAAGGTTTTGAAATTG+AGG - chr5_3:51044703-51044722 Msa0816560:CDS 30.0%
AATTGGAATTAGAGGCTATT+TGG - chr5_3:51044850-51044869 Msa0816560:CDS 30.0%
ATTGGAATTAGAGGCTATTT+GGG - chr5_3:51044851-51044870 Msa0816560:CDS 30.0%
!!! AGAATACTGTGTCAGTTTTT+TGG - chr5_3:51045083-51045102 Msa0816560:intron 30.0%
!!! AGGTTTTTAAAACTATGGTC+CGG + chr5_3:51045478-51045497 None:intergenic 30.0%
!!! AAAAGCATTTTGTTGGTACT+TGG - chr5_3:51045601-51045620 Msa0816560:five_prime_UTR 30.0%
!!! AGGTTTTTTTAACAACAAGG+AGG + chr5_3:51044034-51044053 None:intergenic 30.0%
!! TTCGGAGTATTTTGTTAAGA+GGG + chr5_3:51044182-51044201 None:intergenic 30.0%
!!! TGGTTTGAACTTTTTTTCAC+GGG + chr5_3:51044239-51044258 None:intergenic 30.0%
ATGGATTCAATTGGAATGAT+GGG - chr5_3:51044404-51044423 Msa0816560:three_prime_UTR 30.0%
! CCATCATTAAGTTTAGGTTT+AGG + chr5_3:51044490-51044509 None:intergenic 30.0%
CCTAAACCTAAACTTAATGA+TGG - chr5_3:51044487-51044506 Msa0816560:CDS 30.0%
TGAAGAAGAATTGAAGAGAT+TGG - chr5_3:51044680-51044699 Msa0816560:CDS 30.0%
GAAGAAGAATTGAAGAGATT+GGG - chr5_3:51044681-51044700 Msa0816560:CDS 30.0%
!!! GAGTTAAGGTTTTGAAATTG+AGG - chr5_3:51044703-51044722 Msa0816560:CDS 30.0%
AATTGGAATTAGAGGCTATT+TGG - chr5_3:51044850-51044869 Msa0816560:CDS 30.0%
ATTGGAATTAGAGGCTATTT+GGG - chr5_3:51044851-51044870 Msa0816560:CDS 30.0%
!!! AGAATACTGTGTCAGTTTTT+TGG - chr5_3:51045083-51045102 Msa0816560:intron 30.0%
!!! AGGTTTTTAAAACTATGGTC+CGG + chr5_3:51045478-51045497 None:intergenic 30.0%
!!! AAAAGCATTTTGTTGGTACT+TGG - chr5_3:51045601-51045620 Msa0816560:five_prime_UTR 30.0%
!!! CATTTTTTGCGCTTCATTGT+TGG + chr5_3:51044139-51044158 None:intergenic 35.0%
CAACAATGAAGCGCAAAAAA+TGG - chr5_3:51044137-51044156 Msa0816560:three_prime_UTR 35.0%
!! GTTCGGAGTATTTTGTTAAG+AGG + chr5_3:51044183-51044202 None:intergenic 35.0%
!!! TTTCACGGGTTTTGAGTTTA+GGG + chr5_3:51044225-51044244 None:intergenic 35.0%
!!! TTTTCACGGGTTTTGAGTTT+AGG + chr5_3:51044226-51044245 None:intergenic 35.0%
AACATGCGTCATCAGTATAT+TGG - chr5_3:51044352-51044371 Msa0816560:three_prime_UTR 35.0%
AAGATTCAATCCAGTGATCA+TGG - chr5_3:51044385-51044404 Msa0816560:three_prime_UTR 35.0%
CATGGATTCAATTGGAATGA+TGG - chr5_3:51044403-51044422 Msa0816560:three_prime_UTR 35.0%
TGGATTCAATTGGAATGATG+GGG - chr5_3:51044405-51044424 Msa0816560:three_prime_UTR 35.0%
! GAATGATGGGGTTATTCATT+GGG - chr5_3:51044417-51044436 Msa0816560:three_prime_UTR 35.0%
!!! TAGTTATTTTAGCGTGTGTC+TGG - chr5_3:51044513-51044532 Msa0816560:CDS 35.0%
ATTGAAGAGATTGGGAGTTA+AGG - chr5_3:51044689-51044708 Msa0816560:CDS 35.0%
!!! TAAGGTTTTGAAATTGAGGG+AGG - chr5_3:51044707-51044726 Msa0816560:CDS 35.0%
! TTTGAAATTGAGGGAGGTTA+TGG - chr5_3:51044713-51044732 Msa0816560:CDS 35.0%
!! AAGGAATTTGAGTTTTCGAG+TGG - chr5_3:51044798-51044817 Msa0816560:CDS 35.0%
!!! TTTGAGTTTTCGAGTGGAAA+AGG - chr5_3:51044804-51044823 Msa0816560:CDS 35.0%
!!! TTGAGTTTTCGAGTGGAAAA+GGG - chr5_3:51044805-51044824 Msa0816560:CDS 35.0%
CATAATCAAATGCAGGTTCT+TGG - chr5_3:51045050-51045069 Msa0816560:CDS 35.0%
!!! ACTGTGTCAGTTTTTTGGTT+CGG - chr5_3:51045088-51045107 Msa0816560:intron 35.0%
TTGAAGGAAATGTCTGATTC+CGG - chr5_3:51045433-51045452 Msa0816560:CDS 35.0%
!!! CAGGCAGGTTTTTAAAACTA+TGG + chr5_3:51045483-51045502 None:intergenic 35.0%
!!! CATAGTTTTAAAAACCTGCC+TGG - chr5_3:51045481-51045500 Msa0816560:CDS 35.0%
! GCTTTTTACATCTTTTCGGT+AGG + chr5_3:51045587-51045606 None:intergenic 35.0%
GTTTCTGCTGTTAATTGTGT+TGG - chr5_3:51045685-51045704 Msa0816560:five_prime_UTR 35.0%
!!! CATTTTTTGCGCTTCATTGT+TGG + chr5_3:51044139-51044158 None:intergenic 35.0%
CAACAATGAAGCGCAAAAAA+TGG - chr5_3:51044137-51044156 Msa0816560:three_prime_UTR 35.0%
!! GTTCGGAGTATTTTGTTAAG+AGG + chr5_3:51044183-51044202 None:intergenic 35.0%
!!! TTTCACGGGTTTTGAGTTTA+GGG + chr5_3:51044225-51044244 None:intergenic 35.0%
!!! TTTTCACGGGTTTTGAGTTT+AGG + chr5_3:51044226-51044245 None:intergenic 35.0%
AACATGCGTCATCAGTATAT+TGG - chr5_3:51044352-51044371 Msa0816560:three_prime_UTR 35.0%
AAGATTCAATCCAGTGATCA+TGG - chr5_3:51044385-51044404 Msa0816560:three_prime_UTR 35.0%
CATGGATTCAATTGGAATGA+TGG - chr5_3:51044403-51044422 Msa0816560:three_prime_UTR 35.0%
TGGATTCAATTGGAATGATG+GGG - chr5_3:51044405-51044424 Msa0816560:three_prime_UTR 35.0%
! GAATGATGGGGTTATTCATT+GGG - chr5_3:51044417-51044436 Msa0816560:three_prime_UTR 35.0%
!!! TAGTTATTTTAGCGTGTGTC+TGG - chr5_3:51044513-51044532 Msa0816560:CDS 35.0%
ATTGAAGAGATTGGGAGTTA+AGG - chr5_3:51044689-51044708 Msa0816560:CDS 35.0%
!!! TAAGGTTTTGAAATTGAGGG+AGG - chr5_3:51044707-51044726 Msa0816560:CDS 35.0%
! TTTGAAATTGAGGGAGGTTA+TGG - chr5_3:51044713-51044732 Msa0816560:CDS 35.0%
!! AAGGAATTTGAGTTTTCGAG+TGG - chr5_3:51044798-51044817 Msa0816560:CDS 35.0%
!!! TTTGAGTTTTCGAGTGGAAA+AGG - chr5_3:51044804-51044823 Msa0816560:CDS 35.0%
!!! TTGAGTTTTCGAGTGGAAAA+GGG - chr5_3:51044805-51044824 Msa0816560:CDS 35.0%
CATAATCAAATGCAGGTTCT+TGG - chr5_3:51045050-51045069 Msa0816560:CDS 35.0%
!!! ACTGTGTCAGTTTTTTGGTT+CGG - chr5_3:51045088-51045107 Msa0816560:intron 35.0%
TTGAAGGAAATGTCTGATTC+CGG - chr5_3:51045433-51045452 Msa0816560:CDS 35.0%
!!! CAGGCAGGTTTTTAAAACTA+TGG + chr5_3:51045483-51045502 None:intergenic 35.0%
!!! CATAGTTTTAAAAACCTGCC+TGG - chr5_3:51045481-51045500 Msa0816560:CDS 35.0%
! GCTTTTTACATCTTTTCGGT+AGG + chr5_3:51045587-51045606 None:intergenic 35.0%
GTTTCTGCTGTTAATTGTGT+TGG - chr5_3:51045685-51045704 Msa0816560:five_prime_UTR 35.0%
!! TGTTGTTTCACGAACACATG+AGG + chr5_3:51044054-51044073 None:intergenic 40.0%
!! GATGATGGAGTGGATTTGTT+TGG + chr5_3:51044088-51044107 None:intergenic 40.0%
!! TGATGATGATGATGATGGAG+TGG + chr5_3:51044098-51044117 None:intergenic 40.0%
! GGTGATGATGATGATGATGA+TGG + chr5_3:51044103-51044122 None:intergenic 40.0%
ATTGTTGGAAGGTTTCGTTG+TGG + chr5_3:51044124-51044143 None:intergenic 40.0%
! TTTTGCGCTTCATTGTTGGA+AGG + chr5_3:51044135-51044154 None:intergenic 40.0%
CATTTGAAAGGAAAGGTGGT+TGG + chr5_3:51044301-51044320 None:intergenic 40.0%
CAACCACCTTTCCTTTCAAA+TGG - chr5_3:51044299-51044318 Msa0816560:three_prime_UTR 40.0%
CCAATTGAATCCATGATCAC+TGG + chr5_3:51044398-51044417 None:intergenic 40.0%
CCAGTGATCATGGATTCAAT+TGG - chr5_3:51044395-51044414 Msa0816560:three_prime_UTR 40.0%
! GGAATGATGGGGTTATTCAT+TGG - chr5_3:51044416-51044435 Msa0816560:three_prime_UTR 40.0%
TGTCTGATATGTGTCATGTC+TGG - chr5_3:51044536-51044555 Msa0816560:CDS 40.0%
GACTCTGATGATTCTGATGA+TGG - chr5_3:51044630-51044649 Msa0816560:CDS 40.0%
!! TCTGATGATGGTGATGATGA+CGG - chr5_3:51044642-51044661 Msa0816560:CDS 40.0%
TTATGGTGAAGAGAGAAGAG+AGG - chr5_3:51044730-51044749 Msa0816560:CDS 40.0%
!! GGAGTTTTTGAAGGAGAAAG+AGG - chr5_3:51044764-51044783 Msa0816560:CDS 40.0%
!! TTTTGAAGGAGAAAGAGGAG+TGG - chr5_3:51044769-51044788 Msa0816560:CDS 40.0%
!!! TGAGTTTTCGAGTGGAAAAG+GGG - chr5_3:51044806-51044825 Msa0816560:CDS 40.0%
!! AATGCAGGTTCTTGGTGTTA+TGG - chr5_3:51045058-51045077 Msa0816560:intron 40.0%
!!! CTGTGTCAGTTTTTTGGTTC+GGG - chr5_3:51045089-51045108 Msa0816560:intron 40.0%
!!! TGTGTCAGTTTTTTGGTTCG+GGG - chr5_3:51045090-51045109 Msa0816560:intron 40.0%
!!! TTTTTTGGTTCGGGGAATGA+TGG - chr5_3:51045098-51045117 Msa0816560:intron 40.0%
!!! TTTTTGGTTCGGGGAATGAT+GGG - chr5_3:51045099-51045118 Msa0816560:intron 40.0%
GATTTCTACATGAACTCCGA+AGG + chr5_3:51045212-51045231 None:intergenic 40.0%
TGAAGGAAATGTCTGATTCC+GGG - chr5_3:51045434-51045453 Msa0816560:CDS 40.0%
!! TTTTAAAAACCTGCCTGGAC+TGG - chr5_3:51045486-51045505 Msa0816560:CDS 40.0%
!! TGTTGTTTCACGAACACATG+AGG + chr5_3:51044054-51044073 None:intergenic 40.0%
!! GATGATGGAGTGGATTTGTT+TGG + chr5_3:51044088-51044107 None:intergenic 40.0%
!! TGATGATGATGATGATGGAG+TGG + chr5_3:51044098-51044117 None:intergenic 40.0%
! GGTGATGATGATGATGATGA+TGG + chr5_3:51044103-51044122 None:intergenic 40.0%
ATTGTTGGAAGGTTTCGTTG+TGG + chr5_3:51044124-51044143 None:intergenic 40.0%
! TTTTGCGCTTCATTGTTGGA+AGG + chr5_3:51044135-51044154 None:intergenic 40.0%
CATTTGAAAGGAAAGGTGGT+TGG + chr5_3:51044301-51044320 None:intergenic 40.0%
CAACCACCTTTCCTTTCAAA+TGG - chr5_3:51044299-51044318 Msa0816560:three_prime_UTR 40.0%
CCAATTGAATCCATGATCAC+TGG + chr5_3:51044398-51044417 None:intergenic 40.0%
CCAGTGATCATGGATTCAAT+TGG - chr5_3:51044395-51044414 Msa0816560:three_prime_UTR 40.0%
! GGAATGATGGGGTTATTCAT+TGG - chr5_3:51044416-51044435 Msa0816560:three_prime_UTR 40.0%
TGTCTGATATGTGTCATGTC+TGG - chr5_3:51044536-51044555 Msa0816560:CDS 40.0%
GACTCTGATGATTCTGATGA+TGG - chr5_3:51044630-51044649 Msa0816560:CDS 40.0%
!! TCTGATGATGGTGATGATGA+CGG - chr5_3:51044642-51044661 Msa0816560:CDS 40.0%
TTATGGTGAAGAGAGAAGAG+AGG - chr5_3:51044730-51044749 Msa0816560:CDS 40.0%
!! GGAGTTTTTGAAGGAGAAAG+AGG - chr5_3:51044764-51044783 Msa0816560:CDS 40.0%
!! TTTTGAAGGAGAAAGAGGAG+TGG - chr5_3:51044769-51044788 Msa0816560:CDS 40.0%
!!! TGAGTTTTCGAGTGGAAAAG+GGG - chr5_3:51044806-51044825 Msa0816560:CDS 40.0%
!! AATGCAGGTTCTTGGTGTTA+TGG - chr5_3:51045058-51045077 Msa0816560:intron 40.0%
!!! CTGTGTCAGTTTTTTGGTTC+GGG - chr5_3:51045089-51045108 Msa0816560:intron 40.0%
!!! TGTGTCAGTTTTTTGGTTCG+GGG - chr5_3:51045090-51045109 Msa0816560:intron 40.0%
!!! TTTTTTGGTTCGGGGAATGA+TGG - chr5_3:51045098-51045117 Msa0816560:intron 40.0%
!!! TTTTTGGTTCGGGGAATGAT+GGG - chr5_3:51045099-51045118 Msa0816560:intron 40.0%
GATTTCTACATGAACTCCGA+AGG + chr5_3:51045212-51045231 None:intergenic 40.0%
TGAAGGAAATGTCTGATTCC+GGG - chr5_3:51045434-51045453 Msa0816560:CDS 40.0%
!! TTTTAAAAACCTGCCTGGAC+TGG - chr5_3:51045486-51045505 Msa0816560:CDS 40.0%
TGTTCCTGAACGGTGAAGTT+CGG + chr5_3:51044200-51044219 None:intergenic 45.0%
!! GTTTAGGGAGTGTTCCTGAA+CGG + chr5_3:51044210-51044229 None:intergenic 45.0%
TGGATCGTGAAGATGGTGAA+CGG + chr5_3:51044281-51044300 None:intergenic 45.0%
CGACCATTTGAAAGGAAAGG+TGG + chr5_3:51044305-51044324 None:intergenic 45.0%
CCACGACCATTTGAAAGGAA+AGG + chr5_3:51044308-51044327 None:intergenic 45.0%
CCTTTCCTTTCAAATGGTCG+TGG - chr5_3:51044305-51044324 Msa0816560:three_prime_UTR 45.0%
TGAAGAGAGAAGAGAGGAAG+AGG - chr5_3:51044736-51044755 Msa0816560:CDS 45.0%
GAAGAGAGAAGAGAGGAAGA+GGG - chr5_3:51044737-51044756 Msa0816560:CDS 45.0%
AGGAGAAAGAGGAGTGGAAA+AGG - chr5_3:51044775-51044794 Msa0816560:CDS 45.0%
GAAAGAGGAGTGGAAAAGGA+AGG - chr5_3:51044779-51044798 Msa0816560:CDS 45.0%
!! GAAAAGGGGAGTGTTGTTGT+GGG - chr5_3:51044820-51044839 Msa0816560:CDS 45.0%
!! AAAAGGGGAGTGTTGTTGTG+GGG - chr5_3:51044821-51044840 Msa0816560:CDS 45.0%
GGAGAGGGAATTGGAATTAG+AGG - chr5_3:51044842-51044861 Msa0816560:CDS 45.0%
GAAGAAGGAGGTTGAGAAGA+GGG - chr5_3:51044875-51044894 Msa0816560:CDS 45.0%
GAAGAGGGTTAGGTTAGAGA+AGG - chr5_3:51044890-51044909 Msa0816560:CDS 45.0%
TAGGTTAGAGAAGGAGCTTG+AGG - chr5_3:51044899-51044918 Msa0816560:CDS 45.0%
GGCGTGTCATAATCAAATGC+AGG - chr5_3:51045043-51045062 Msa0816560:CDS 45.0%
!! TTGCATCATGGTGGTGGTTT+GGG - chr5_3:51045161-51045180 Msa0816560:intron 45.0%
! ACCTGATGCTAGTTCTCCTT+CGG - chr5_3:51045193-51045212 Msa0816560:CDS 45.0%
!! TCATTGGAATGCTGCTTTCC+TGG - chr5_3:51045328-51045347 Msa0816560:CDS 45.0%
GAAGGAAATGTCTGATTCCG+GGG - chr5_3:51045435-51045454 Msa0816560:CDS 45.0%
! ATGCCCAGCTGTTTCATGTT+GGG + chr5_3:51045520-51045539 None:intergenic 45.0%
! TATGCCCAGCTGTTTCATGT+TGG + chr5_3:51045521-51045540 None:intergenic 45.0%
TGTTCCTGAACGGTGAAGTT+CGG + chr5_3:51044200-51044219 None:intergenic 45.0%
!! GTTTAGGGAGTGTTCCTGAA+CGG + chr5_3:51044210-51044229 None:intergenic 45.0%
TGGATCGTGAAGATGGTGAA+CGG + chr5_3:51044281-51044300 None:intergenic 45.0%
CGACCATTTGAAAGGAAAGG+TGG + chr5_3:51044305-51044324 None:intergenic 45.0%
CCACGACCATTTGAAAGGAA+AGG + chr5_3:51044308-51044327 None:intergenic 45.0%
CCTTTCCTTTCAAATGGTCG+TGG - chr5_3:51044305-51044324 Msa0816560:three_prime_UTR 45.0%
TGAAGAGAGAAGAGAGGAAG+AGG - chr5_3:51044736-51044755 Msa0816560:CDS 45.0%
GAAGAGAGAAGAGAGGAAGA+GGG - chr5_3:51044737-51044756 Msa0816560:CDS 45.0%
AGGAGAAAGAGGAGTGGAAA+AGG - chr5_3:51044775-51044794 Msa0816560:CDS 45.0%
GAAAGAGGAGTGGAAAAGGA+AGG - chr5_3:51044779-51044798 Msa0816560:CDS 45.0%
!! GAAAAGGGGAGTGTTGTTGT+GGG - chr5_3:51044820-51044839 Msa0816560:CDS 45.0%
!! AAAAGGGGAGTGTTGTTGTG+GGG - chr5_3:51044821-51044840 Msa0816560:CDS 45.0%
GGAGAGGGAATTGGAATTAG+AGG - chr5_3:51044842-51044861 Msa0816560:CDS 45.0%
GAAGAAGGAGGTTGAGAAGA+GGG - chr5_3:51044875-51044894 Msa0816560:CDS 45.0%
GAAGAGGGTTAGGTTAGAGA+AGG - chr5_3:51044890-51044909 Msa0816560:CDS 45.0%
TAGGTTAGAGAAGGAGCTTG+AGG - chr5_3:51044899-51044918 Msa0816560:CDS 45.0%
GGCGTGTCATAATCAAATGC+AGG - chr5_3:51045043-51045062 Msa0816560:CDS 45.0%
!! TTGCATCATGGTGGTGGTTT+GGG - chr5_3:51045161-51045180 Msa0816560:intron 45.0%
! ACCTGATGCTAGTTCTCCTT+CGG - chr5_3:51045193-51045212 Msa0816560:CDS 45.0%
!! TCATTGGAATGCTGCTTTCC+TGG - chr5_3:51045328-51045347 Msa0816560:CDS 45.0%
GAAGGAAATGTCTGATTCCG+GGG - chr5_3:51045435-51045454 Msa0816560:CDS 45.0%
! ATGCCCAGCTGTTTCATGTT+GGG + chr5_3:51045520-51045539 None:intergenic 45.0%
! TATGCCCAGCTGTTTCATGT+TGG + chr5_3:51045521-51045540 None:intergenic 45.0%
TACTCCGAACTTCACCGTTC+AGG - chr5_3:51044193-51044212 Msa0816560:three_prime_UTR 50.0%
!! GTGAACGGCGTTGACATGAT+CGG + chr5_3:51044266-51044285 None:intergenic 50.0%
AGGTGGTTGGATCGTGAAGA+TGG + chr5_3:51044288-51044307 None:intergenic 50.0%
!! GATGGTGATGATGACGGTGA+TGG - chr5_3:51044648-51044667 Msa0816560:CDS 50.0%
AGAAGAGAGGAAGAGGGAGA+GGG - chr5_3:51044743-51044762 Msa0816560:CDS 50.0%
! GAGGGAGAGGGAGTTTTTGA+AGG - chr5_3:51044755-51044774 Msa0816560:CDS 50.0%
!! GGAAAAGGGGAGTGTTGTTG+TGG - chr5_3:51044819-51044838 Msa0816560:CDS 50.0%
TTGTTGTGGGGAGAGGGAAT+TGG - chr5_3:51044833-51044852 Msa0816560:CDS 50.0%
AGAGGCTATTTGGGCGAAGA+AGG - chr5_3:51044860-51044879 Msa0816560:CDS 50.0%
CGAAGAAGGAGGTTGAGAAG+AGG - chr5_3:51044874-51044893 Msa0816560:CDS 50.0%
AGGAGGTTGAGAAGAGGGTT+AGG - chr5_3:51044880-51044899 Msa0816560:CDS 50.0%
GTTAGAGAAGGAGCTTGAGG+AGG - chr5_3:51044902-51044921 Msa0816560:CDS 50.0%
GAGGAAGGTGGAAGAGAAGA+TGG - chr5_3:51044938-51044957 Msa0816560:CDS 50.0%
GAAGGTGGAAGAGAAGATGG+AGG - chr5_3:51044941-51044960 Msa0816560:CDS 50.0%
GGAAGAGAAGATGGAGGAAG+AGG - chr5_3:51044947-51044966 Msa0816560:CDS 50.0%
GAAGATGGAGGAAGAGGAGA+TGG - chr5_3:51044953-51044972 Msa0816560:CDS 50.0%
GATGATGCAGATGCATGCTG+AGG - chr5_3:51045022-51045041 Msa0816560:CDS 50.0%
!! ATTAGGGACATTGCCGACTC+AGG - chr5_3:51045136-51045155 Msa0816560:intron 50.0%
CCATGATGCAACACCTGAGT+CGG + chr5_3:51045152-51045171 None:intergenic 50.0%
! ACTCAGGTGTTGCATCATGG+TGG - chr5_3:51045152-51045171 Msa0816560:intron 50.0%
!! GTTGCATCATGGTGGTGGTT+TGG - chr5_3:51045160-51045179 Msa0816560:intron 50.0%
!! TGCATCATGGTGGTGGTTTG+GGG - chr5_3:51045162-51045181 Msa0816560:intron 50.0%
TCCGAAGGAGAACTAGCATC+AGG + chr5_3:51045197-51045216 None:intergenic 50.0%
GAAATGGCATTGCTCGATCC+AGG + chr5_3:51045349-51045368 None:intergenic 50.0%
AATGTCTGATTCCGGGGAAG+AGG - chr5_3:51045441-51045460 Msa0816560:CDS 50.0%
ATGTCTGATTCCGGGGAAGA+GGG - chr5_3:51045442-51045461 Msa0816560:CDS 50.0%
TGTGCCCAACATGAAACAGC+TGG - chr5_3:51045513-51045532 Msa0816560:CDS 50.0%
GTGCCCAACATGAAACAGCT+GGG - chr5_3:51045514-51045533 Msa0816560:CDS 50.0%
TACTCCGAACTTCACCGTTC+AGG - chr5_3:51044193-51044212 Msa0816560:three_prime_UTR 50.0%
!! GTGAACGGCGTTGACATGAT+CGG + chr5_3:51044266-51044285 None:intergenic 50.0%
AGGTGGTTGGATCGTGAAGA+TGG + chr5_3:51044288-51044307 None:intergenic 50.0%
!! GATGGTGATGATGACGGTGA+TGG - chr5_3:51044648-51044667 Msa0816560:CDS 50.0%
AGAAGAGAGGAAGAGGGAGA+GGG - chr5_3:51044743-51044762 Msa0816560:CDS 50.0%
! GAGGGAGAGGGAGTTTTTGA+AGG - chr5_3:51044755-51044774 Msa0816560:CDS 50.0%
!! GGAAAAGGGGAGTGTTGTTG+TGG - chr5_3:51044819-51044838 Msa0816560:CDS 50.0%
TTGTTGTGGGGAGAGGGAAT+TGG - chr5_3:51044833-51044852 Msa0816560:CDS 50.0%
AGAGGCTATTTGGGCGAAGA+AGG - chr5_3:51044860-51044879 Msa0816560:CDS 50.0%
CGAAGAAGGAGGTTGAGAAG+AGG - chr5_3:51044874-51044893 Msa0816560:CDS 50.0%
AGGAGGTTGAGAAGAGGGTT+AGG - chr5_3:51044880-51044899 Msa0816560:CDS 50.0%
GTTAGAGAAGGAGCTTGAGG+AGG - chr5_3:51044902-51044921 Msa0816560:CDS 50.0%
GAGGAAGGTGGAAGAGAAGA+TGG - chr5_3:51044938-51044957 Msa0816560:CDS 50.0%
GAAGGTGGAAGAGAAGATGG+AGG - chr5_3:51044941-51044960 Msa0816560:CDS 50.0%
GGAAGAGAAGATGGAGGAAG+AGG - chr5_3:51044947-51044966 Msa0816560:CDS 50.0%
GAAGATGGAGGAAGAGGAGA+TGG - chr5_3:51044953-51044972 Msa0816560:CDS 50.0%
GATGATGCAGATGCATGCTG+AGG - chr5_3:51045022-51045041 Msa0816560:CDS 50.0%
!! ATTAGGGACATTGCCGACTC+AGG - chr5_3:51045136-51045155 Msa0816560:intron 50.0%
CCATGATGCAACACCTGAGT+CGG + chr5_3:51045152-51045171 None:intergenic 50.0%
! ACTCAGGTGTTGCATCATGG+TGG - chr5_3:51045152-51045171 Msa0816560:intron 50.0%
!! GTTGCATCATGGTGGTGGTT+TGG - chr5_3:51045160-51045179 Msa0816560:intron 50.0%
!! TGCATCATGGTGGTGGTTTG+GGG - chr5_3:51045162-51045181 Msa0816560:intron 50.0%
TCCGAAGGAGAACTAGCATC+AGG + chr5_3:51045197-51045216 None:intergenic 50.0%
GAAATGGCATTGCTCGATCC+AGG + chr5_3:51045349-51045368 None:intergenic 50.0%
AATGTCTGATTCCGGGGAAG+AGG - chr5_3:51045441-51045460 Msa0816560:CDS 50.0%
ATGTCTGATTCCGGGGAAGA+GGG - chr5_3:51045442-51045461 Msa0816560:CDS 50.0%
TGTGCCCAACATGAAACAGC+TGG - chr5_3:51045513-51045532 Msa0816560:CDS 50.0%
GTGCCCAACATGAAACAGCT+GGG - chr5_3:51045514-51045533 Msa0816560:CDS 50.0%
! GCGTTGACATGATCGGCGAT+TGG + chr5_3:51044259-51044278 None:intergenic 55.0%
TCGCGCCACGACCATTTGAA+AGG + chr5_3:51044313-51044332 None:intergenic 55.0%
GAGAAGAGAGGAAGAGGGAG+AGG - chr5_3:51044742-51044761 Msa0816560:CDS 55.0%
!! GGAGTGTTGTTGTGGGGAGA+GGG - chr5_3:51044827-51044846 Msa0816560:CDS 55.0%
GGCTATTTGGGCGAAGAAGG+AGG - chr5_3:51044863-51044882 Msa0816560:CDS 55.0%
AGGAGCTTGAGGAGGAGAAG+AGG - chr5_3:51044910-51044929 Msa0816560:CDS 55.0%
AGCTTGAGGAGGAGAAGAGG+AGG - chr5_3:51044913-51044932 Msa0816560:CDS 55.0%
TTGAGGAGGAGAAGAGGAGG+AGG - chr5_3:51044916-51044935 Msa0816560:CDS 55.0%
TGGAGGAAGAGGAGATGGAG+TGG - chr5_3:51044958-51044977 Msa0816560:CDS 55.0%
AGGAAGAGGAGATGGAGTGG+AGG - chr5_3:51044961-51044980 Msa0816560:CDS 55.0%
GGAAGAGGAGATGGAGTGGA+GGG - chr5_3:51044962-51044981 Msa0816560:CDS 55.0%
GATGGAGTGGAGGGAGAAGA+TGG - chr5_3:51044971-51044990 Msa0816560:CDS 55.0%
! TGGTTCGGGGAATGATGGGA+TGG - chr5_3:51045103-51045122 Msa0816560:intron 55.0%
! GGTTCGGGGAATGATGGGAT+GGG - chr5_3:51045104-51045123 Msa0816560:intron 55.0%
! AATGATGGGATGGGTGGTGC+TGG - chr5_3:51045113-51045132 Msa0816560:intron 55.0%
! GGATGGGTGGTGCTGGATTA+GGG - chr5_3:51045120-51045139 Msa0816560:intron 55.0%
! CCGACTCAGGTGTTGCATCA+TGG - chr5_3:51045149-51045168 Msa0816560:intron 55.0%
! CAGGTGTTGCATCATGGTGG+TGG - chr5_3:51045155-51045174 Msa0816560:intron 55.0%
ATTCCGGGGAAGAGGGAGAA+AGG - chr5_3:51045449-51045468 Msa0816560:CDS 55.0%
TTCCGGGGAAGAGGGAGAAA+GGG - chr5_3:51045450-51045469 Msa0816560:CDS 55.0%
TTCCCTTTCTCCCTCTTCCC+CGG + chr5_3:51045455-51045474 None:intergenic 55.0%
GGAAGAGGGAGAAAGGGAAC+CGG - chr5_3:51045456-51045475 Msa0816560:CDS 55.0%
TTGGGCACATCTACCAGTCC+AGG + chr5_3:51045502-51045521 None:intergenic 55.0%
! GCGTTGACATGATCGGCGAT+TGG + chr5_3:51044259-51044278 None:intergenic 55.0%
TCGCGCCACGACCATTTGAA+AGG + chr5_3:51044313-51044332 None:intergenic 55.0%
GAGAAGAGAGGAAGAGGGAG+AGG - chr5_3:51044742-51044761 Msa0816560:CDS 55.0%
!! GGAGTGTTGTTGTGGGGAGA+GGG - chr5_3:51044827-51044846 Msa0816560:CDS 55.0%
GGCTATTTGGGCGAAGAAGG+AGG - chr5_3:51044863-51044882 Msa0816560:CDS 55.0%
AGGAGCTTGAGGAGGAGAAG+AGG - chr5_3:51044910-51044929 Msa0816560:CDS 55.0%
AGCTTGAGGAGGAGAAGAGG+AGG - chr5_3:51044913-51044932 Msa0816560:CDS 55.0%
TTGAGGAGGAGAAGAGGAGG+AGG - chr5_3:51044916-51044935 Msa0816560:CDS 55.0%
TGGAGGAAGAGGAGATGGAG+TGG - chr5_3:51044958-51044977 Msa0816560:CDS 55.0%
AGGAAGAGGAGATGGAGTGG+AGG - chr5_3:51044961-51044980 Msa0816560:CDS 55.0%
GGAAGAGGAGATGGAGTGGA+GGG - chr5_3:51044962-51044981 Msa0816560:CDS 55.0%
GATGGAGTGGAGGGAGAAGA+TGG - chr5_3:51044971-51044990 Msa0816560:CDS 55.0%
! TGGTTCGGGGAATGATGGGA+TGG - chr5_3:51045103-51045122 Msa0816560:intron 55.0%
! GGTTCGGGGAATGATGGGAT+GGG - chr5_3:51045104-51045123 Msa0816560:intron 55.0%
! AATGATGGGATGGGTGGTGC+TGG - chr5_3:51045113-51045132 Msa0816560:intron 55.0%
! GGATGGGTGGTGCTGGATTA+GGG - chr5_3:51045120-51045139 Msa0816560:intron 55.0%
! CCGACTCAGGTGTTGCATCA+TGG - chr5_3:51045149-51045168 Msa0816560:intron 55.0%
! CAGGTGTTGCATCATGGTGG+TGG - chr5_3:51045155-51045174 Msa0816560:intron 55.0%
ATTCCGGGGAAGAGGGAGAA+AGG - chr5_3:51045449-51045468 Msa0816560:CDS 55.0%
TTCCGGGGAAGAGGGAGAAA+GGG - chr5_3:51045450-51045469 Msa0816560:CDS 55.0%
TTCCCTTTCTCCCTCTTCCC+CGG + chr5_3:51045455-51045474 None:intergenic 55.0%
GGAAGAGGGAGAAAGGGAAC+CGG - chr5_3:51045456-51045475 Msa0816560:CDS 55.0%
TTGGGCACATCTACCAGTCC+AGG + chr5_3:51045502-51045521 None:intergenic 55.0%
!! GGGAGTGTTGTTGTGGGGAG+AGG - chr5_3:51044826-51044845 Msa0816560:CDS 60.0%
AGGAGGAGAAGAGGAGGAGG+AGG - chr5_3:51044919-51044938 Msa0816560:CDS 60.0%
GGAGAAGAGGAGGAGGAGGA+AGG - chr5_3:51044923-51044942 Msa0816560:CDS 60.0%
GAAGAGGAGGAGGAGGAAGG+TGG - chr5_3:51044926-51044945 Msa0816560:CDS 60.0%
GGAGTGGAGGGAGAAGATGG+TGG - chr5_3:51044974-51044993 Msa0816560:CDS 60.0%
! TCGGGGAATGATGGGATGGG+TGG - chr5_3:51045107-51045126 Msa0816560:intron 60.0%
! GGGATGGGTGGTGCTGGATT+AGG - chr5_3:51045119-51045138 Msa0816560:intron 60.0%
GCACATCTACCAGTCCAGGC+AGG + chr5_3:51045498-51045517 None:intergenic 60.0%
!! GGGAGTGTTGTTGTGGGGAG+AGG - chr5_3:51044826-51044845 Msa0816560:CDS 60.0%
AGGAGGAGAAGAGGAGGAGG+AGG - chr5_3:51044919-51044938 Msa0816560:CDS 60.0%
GGAGAAGAGGAGGAGGAGGA+AGG - chr5_3:51044923-51044942 Msa0816560:CDS 60.0%
GAAGAGGAGGAGGAGGAAGG+TGG - chr5_3:51044926-51044945 Msa0816560:CDS 60.0%
GGAGTGGAGGGAGAAGATGG+TGG - chr5_3:51044974-51044993 Msa0816560:CDS 60.0%
! TCGGGGAATGATGGGATGGG+TGG - chr5_3:51045107-51045126 Msa0816560:intron 60.0%
! GGGATGGGTGGTGCTGGATT+AGG - chr5_3:51045119-51045138 Msa0816560:intron 60.0%
GCACATCTACCAGTCCAGGC+AGG + chr5_3:51045498-51045517 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 51043971 51045713 51043971 ID=Msa0816560;Name=Msa0816560
chr5_3 mRNA 51043971 51045713 51043971 ID=Msa0816560-mRNA-1;Parent=Msa0816560;Name=Msa0816560-mRNA-1;_AED=0.00;_eAED=0.00;_QI=171|1|1|1|1|1|2|487|327
chr5_3 exon 51043971 51045074 51043971 ID=Msa0816560-mRNA-1:exon:15311;Parent=Msa0816560-mRNA-1
chr5_3 exon 51045176 51045713 51045176 ID=Msa0816560-mRNA-1:exon:15310;Parent=Msa0816560-mRNA-1
chr5_3 five_prime_UTR 51045543 51045713 51045543 ID=Msa0816560-mRNA-1:five_prime_utr;Parent=Msa0816560-mRNA-1
chr5_3 CDS 51045176 51045542 51045176 ID=Msa0816560-mRNA-1:cds;Parent=Msa0816560-mRNA-1
chr5_3 CDS 51044458 51045074 51044458 ID=Msa0816560-mRNA-1:cds;Parent=Msa0816560-mRNA-1
chr5_3 three_prime_UTR 51043971 51044457 51043971 ID=Msa0816560-mRNA-1:three_prime_utr;Parent=Msa0816560-mRNA-1
Gene Sequence

>Msa0816560

ATGAAGCGCAAAAAATGGTCAGAACTCGAAGAACAAACCCTCTTAACAAAATACTCCGAACTTCACCGTTCAGGAACACTCCCTAAACTCAAAACCCGTGAAAAAAAGTTCAAACCAATCGCCGATCATGTCAACGCCGTTCACCATCTTCACGATCCAACCACCTTTCCTTTCAAATGGTCGTGGCGCGATGTTTCGATTAAAGTTCAAAACATGCGTCATCAGTATATTGGTGTTAAACACAAGATTCAATCCAGTGATCATGGATTCAATTGGAATGATGGGGTTATTCATTGGGAGAATTTTCTTAATTATAAACGTGTTTTTGGTGATGTTAAAATTCATCCTAAACCTAAACTTAATGATGGGTTTGAAACTGAAATTGATGACTCTGATGATTCTGATGATGGTGATGATGACGGTGATGGTGATGTTAGTGAAGAAGAATTGAAGAGATTGGGAGTTAAGGTTTTGAAATTGAGGGAGGTTATGGTGAAGAGAGAAGAGAGGAAGAGGGAGAGGGAGTTTTTGAAGGAGAAAGAGGAGTGGAAAAGGAAGGAATTTGAGTTTTCGAGTGGAAAAGGGGAGTGTTGTTGTGGGGAGAGGGAATTGGAATTAGAGGCTATTTGGGCGAAGAAGGAGGTTGAGAAGAGGGTTAGGTTAGAGAAGGAGCTTGAGGAGGAGAAGAGGAGGAGGAGGAAGGTGGAAGAGAAGATGGAGGAAGAGGAGATGGAGTGGAGGGAGAAGATGGTGGCTATGCAGATTGAGCATGAGAAGCAGATGATGCAGATGCATGCTGAGGCGTGTCATAATCAAATGCAGGTTCTTGGTGTTATGGCGAGAATACTGTGTCAGTTTTTTGGTTCGGGGAATGATGGGATGGGTGGTGCTGGATTAGGGACATTGCCGACTCAGGTGTTGCATCATGGTGGTGGTTTGGGGAATGTGAAACCTGATGCTAGTTCTCCTTCGGAGTTCATGTAG
Protein sequence

>Msa0816560

MKRKKWSELEEQTLLTKYSELHRSGTLPKLKTREKKFKPIADHVNAVHHLHDPTTFPFKWSWRDVSIKVQNMRHQYIGVKHKIQSSDHGFNWNDGVIHWENFLNYKRVFGDVKIHPKPKLNDGFETEIDDSDDSDDGDDDGDGDVSEEELKRLGVKVLKLREVMVKREERKREREFLKEKEEWKRKEFEFSSGKGECCCGERELELEAIWAKKEVEKRVRLEKELEEEKRRRRKVEEKMEEEEMEWREKMVAMQIEHEKQMMQMHAEACHNQMQVLGVMARILCQFFGSGNDGMGGAGLGTLPTQVLHHGGGLGNVKPDASSPSEFM*