AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0383490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383490 MtrunA17_Chr3g0139341 99.216 255 2 0 1 255 1 255 0.0 528
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0383490 AT5G24840.1 79.835 243 46 2 8 249 8 248 1.17e-146 410

Find 86 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTAAGTTTGCCGATAT+TGG 0.221557 3_1:+86415711 Msa0383490:CDS
TCCGCACCACAGAAACATTT+TGG 0.250656 3_1:-86415875 None:intergenic
ATTCCGATCATCAATGTTTC+TGG 0.252188 3_1:-86415777 None:intergenic
AAGTCGCTTTGCGGAGCTTC+AGG 0.255162 3_1:-86414895 None:intergenic
GCCGATATTGGCTGTGGTTT+TGG 0.274610 3_1:+86415723 Msa0383490:CDS
ATCCTTCAAAAGCAGCTTAT+AGG 0.280660 3_1:-86414923 None:intergenic
CCTCGTTTCTAGCAACCTTT+TGG 0.326676 3_1:-86416205 None:intergenic
TCCTTCAAAAGCAGCTTATA+GGG 0.360306 3_1:-86414922 None:intergenic
TAAAATGAGGATCGGGAAAC+AGG 0.368009 3_1:-86415959 None:intergenic
TCACTGGCAACAAATCAAAT+AGG 0.376240 3_1:-86416454 None:intergenic
TATCATGCAGAGTGTAGTTC+AGG 0.385450 3_1:+86416425 Msa0383490:three_prime_UTR
TTCTCTTTAAAATGAGGATC+GGG 0.398927 3_1:-86415966 None:intergenic
GCATACTCATCTAGTAAGAA+TGG 0.400409 3_1:-86416014 None:intergenic
AAACGAGGGACAAACTTTCC+AGG 0.404412 3_1:+86416220 Msa0383490:CDS
TTGTGCTTTCTCAAAGTGAT+TGG 0.404689 3_1:-86415919 None:intergenic
GGACTGGATGAAATCTTGTT+TGG 0.409104 3_1:+86416094 Msa0383490:CDS
TTTGTTGCCAGTGACAATTT+TGG 0.411251 3_1:+86416463 Msa0383490:three_prime_UTR
AAAGTGAATAATCATATTGA+TGG 0.414368 3_1:-86416500 None:intergenic
TCCAAAACCACAGCCAATAT+CGG 0.417152 3_1:-86415724 None:intergenic
AGTTGCTTAATCTAATGTGC+TGG 0.421270 3_1:+86416289 Msa0383490:three_prime_UTR
TTAAGCTCTGCCACTGAAGA+AGG 0.428496 3_1:+86416182 Msa0383490:CDS
TGTGCTTTCTCAAAGTGATT+GGG 0.444654 3_1:-86415918 None:intergenic
TCAACATTCAGTAAGTCAAC+AGG 0.452366 3_1:+86415537 Msa0383490:CDS
GTGATTGGGAATGTACTTCA+TGG 0.454613 3_1:-86415904 None:intergenic
GTTGAATTTCCACCAGTCTC+AGG 0.455044 3_1:-86415519 None:intergenic
TGGTTCTTCTCTTTAAAATG+AGG 0.455252 3_1:-86415972 None:intergenic
CAGTCAAAGGTTCAAACAAC+GGG 0.464877 3_1:-86416124 None:intergenic
GTTGCTACAGAAGAATCATA+TGG 0.465307 3_1:+86416326 Msa0383490:three_prime_UTR
AGATTAAGCAACTAAAATCT+AGG 0.465505 3_1:-86416279 None:intergenic
TAAAGTGTCCGAGTATGTTA+AGG 0.471708 3_1:+86415812 Msa0383490:CDS
TCAAGTTCTTTCTCAGTCAA+AGG 0.473439 3_1:-86416137 None:intergenic
ATAATAGTAACGGAAGGATT+CGG 0.474029 3_1:-86414947 None:intergenic
ATAACAGATGTGGAAGAACT+TGG 0.476880 3_1:+86416071 Msa0383490:CDS
TAGGGAACGAAGTCGCTTTG+CGG 0.476907 3_1:-86414904 None:intergenic
GCTCGATAGAAGCGCTTTCG+AGG 0.477207 3_1:-86415564 None:intergenic
ACAGAAGAATCATATGGTCT+TGG 0.480167 3_1:+86416332 Msa0383490:three_prime_UTR
TCTTTAAGGGTAGCAAATCC+AGG 0.486768 3_1:+86415846 Msa0383490:CDS
GAAAGAACTTGAAGCAGATC+CGG 0.487319 3_1:+86416148 Msa0383490:CDS
TTCCGATCATCAATGTTTCT+GGG 0.488618 3_1:-86415776 None:intergenic
AGAGAAGAACCATCGCCGTC+GGG 0.492041 3_1:+86415983 Msa0383490:CDS
GAGGGAATAGTCAACATGAC+TGG 0.493842 3_1:-86415640 None:intergenic
CTTCTCTTTAAAATGAGGAT+CGG 0.494124 3_1:-86415967 None:intergenic
GTTGCTTAATCTAATGTGCT+GGG 0.495833 3_1:+86416290 Msa0383490:three_prime_UTR
CATACTCATCTAGTAAGAAT+GGG 0.503167 3_1:-86416013 None:intergenic
AGTCGCTTTGCGGAGCTTCA+GGG 0.504230 3_1:-86414894 None:intergenic
TGCCACTGAAGAAGGCCAAA+AGG 0.507812 3_1:+86416190 Msa0383490:CDS
TCAACATGACTGGGTGATAA+CGG 0.513146 3_1:-86415630 None:intergenic
AGGGAAAGAACTGAGGGTAA+TGG 0.514591 3_1:-86415662 None:intergenic
AAGTTTGCCGATATTGGCTG+TGG 0.514722 3_1:+86415717 Msa0383490:CDS
CTTCCGTTACTATTATTACC+AGG 0.515137 3_1:+86414954 Msa0383490:five_prime_UTR
GAAAGAACTGAGGGTAATGG+AGG 0.517145 3_1:-86415659 None:intergenic
TAACAGATGTGGAAGAACTT+GGG 0.526686 3_1:+86416072 Msa0383490:CDS
AAATGAACCAAAATTGTCAC+TGG 0.530056 3_1:-86416470 None:intergenic
AAGAGAAGAACCATCGCCGT+CGG 0.534336 3_1:+86415982 Msa0383490:CDS
CTATCAGCTTTCTCAGACGA+GGG 0.534942 3_1:-86415681 None:intergenic
CAATGCGTCTGTATACAGCC+TGG 0.550730 3_1:-86416238 None:intergenic
GGCTGATAACCCGACGGCGA+TGG 0.555787 3_1:-86415992 None:intergenic
CGGAGCTTCAGGGGTAGCAG+CGG 0.557750 3_1:-86414884 None:intergenic
GTCGCTTTGCGGAGCTTCAG+GGG 0.561904 3_1:-86414893 None:intergenic
TAAACAGACATGCCTGAGAC+TGG 0.565306 3_1:+86415507 Msa0383490:intron
ACCAAAATGTTTCTGTGGTG+CGG 0.567556 3_1:+86415874 Msa0383490:CDS
AATTCGTTCCTTAACATACT+CGG 0.570956 3_1:-86415820 None:intergenic
TTCCCAGAAACATTGATGAT+CGG 0.572410 3_1:+86415774 Msa0383490:CDS
GAGCTTAAAAGCTTAACAGC+CGG 0.573038 3_1:-86416167 None:intergenic
ATGTGGAAGAACTTGGGGAC+TGG 0.574117 3_1:+86416078 Msa0383490:CDS
TGACTGGGTGATAACGGCAC+AGG 0.576851 3_1:-86415624 None:intergenic
AGAAACATTGATGATCGGAA+TGG 0.582107 3_1:+86415779 Msa0383490:CDS
TTACCTGGTAATAATAGTAA+CGG 0.597269 3_1:-86414957 None:intergenic
AAAGAACTGAGGGTAATGGA+GGG 0.599329 3_1:-86415658 None:intergenic
TATATACACAATAACAGATG+TGG 0.600775 3_1:+86416061 Msa0383490:CDS
AACAGATGTGGAAGAACTTG+GGG 0.605004 3_1:+86416073 Msa0383490:CDS
GGAAATGAGAGTCACTGAGC+GGG 0.605858 3_1:-86415602 None:intergenic
GACTGGGTGATAACGGCACA+GGG 0.611699 3_1:-86415623 None:intergenic
TCAGTCAAAGGTTCAAACAA+CGG 0.617042 3_1:-86416125 None:intergenic
TCAATACCAAAATGTTTCTG+TGG 0.618646 3_1:+86415869 Msa0383490:CDS
CCAAAAGGTTGCTAGAAACG+AGG 0.621682 3_1:+86416205 Msa0383490:CDS
AGGGAATAGTCAACATGACT+GGG 0.631622 3_1:-86415639 None:intergenic
CTGGTAATAATAGTAACGGA+AGG 0.635992 3_1:-86414953 None:intergenic
ACAGACATGCCTGAGACTGG+TGG 0.638512 3_1:+86415510 Msa0383490:intron
GGGAAATGAGAGTCACTGAG+CGG 0.640601 3_1:-86415603 None:intergenic
CAAAAGGTTGCTAGAAACGA+GGG 0.641444 3_1:+86416206 Msa0383490:CDS
ACTATCAGCTTTCTCAGACG+AGG 0.648094 3_1:-86415682 None:intergenic
CAATGTTTCTGGGAACAGAG+TGG 0.655902 3_1:-86415766 None:intergenic
CAGACGAGGGAAAGAACTGA+GGG 0.659441 3_1:-86415668 None:intergenic
TCAGACGAGGGAAAGAACTG+AGG 0.695327 3_1:-86415669 None:intergenic
AGAATGGGCTGATAACCCGA+CGG 0.724299 3_1:-86415998 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAATCATAGAATAAATT+TGG - chr3_1:86415207-86415226 None:intergenic 15.0%
!! AACAAATCATAGAATAAATT+TGG - chr3_1:86415207-86415226 None:intergenic 15.0%
!! CAATTATAAAGAAACCAAAT+TGG - chr3_1:86415266-86415285 None:intergenic 20.0%
!! ATAACTAATTCTAATACACT+AGG - chr3_1:86415297-86415316 None:intergenic 20.0%
!! TAGTGTATTAGAATTAGTTA+TGG + chr3_1:86415296-86415315 Msa0383490:intron 20.0%
!! AACTAACTAAATTCATTAGA+AGG - chr3_1:86415327-86415346 None:intergenic 20.0%
!! AAAGTGAATAATCATATTGA+TGG - chr3_1:86416503-86416522 None:intergenic 20.0%
!! CAATTATAAAGAAACCAAAT+TGG - chr3_1:86415266-86415285 None:intergenic 20.0%
!! ATAACTAATTCTAATACACT+AGG - chr3_1:86415297-86415316 None:intergenic 20.0%
!! TAGTGTATTAGAATTAGTTA+TGG + chr3_1:86415296-86415315 Msa0383490:intron 20.0%
!! AACTAACTAAATTCATTAGA+AGG - chr3_1:86415327-86415346 None:intergenic 20.0%
!! AAAGTGAATAATCATATTGA+TGG - chr3_1:86416503-86416522 None:intergenic 20.0%
! TTACCTGGTAATAATAGTAA+CGG - chr3_1:86414960-86414979 None:intergenic 25.0%
! TAATAGATCGAGAACAAAAA+AGG - chr3_1:86414992-86415011 None:intergenic 25.0%
! TTAAATTCATCCTAATTCGA+AGG - chr3_1:86415050-86415069 None:intergenic 25.0%
! TTCGAATTAGGATGAATTTA+AGG + chr3_1:86415049-86415068 Msa0383490:intron 25.0%
!! TAACAGAATAGAAAAAGCAT+TGG + chr3_1:86415238-86415257 Msa0383490:intron 25.0%
! GATAATCAAAAAAGAAATGC+AGG - chr3_1:86415399-86415418 None:intergenic 25.0%
! CAAGCTGTTAAATTTGTATA+TGG - chr3_1:86415437-86415456 None:intergenic 25.0%
!! TACAAATTTAACAGCTTGTT+TGG + chr3_1:86415439-86415458 Msa0383490:intron 25.0%
!! AGGAACGAATTTTATCTTTA+AGG + chr3_1:86415832-86415851 Msa0383490:CDS 25.0%
!! GGAACGAATTTTATCTTTAA+GGG + chr3_1:86415833-86415852 Msa0383490:CDS 25.0%
! TATATACACAATAACAGATG+TGG + chr3_1:86416061-86416080 Msa0383490:CDS 25.0%
! AGATTAAGCAACTAAAATCT+AGG - chr3_1:86416282-86416301 None:intergenic 25.0%
!!! TTTTGTTTTCAACATCGAAT+AGG - chr3_1:86416404-86416423 None:intergenic 25.0%
! TTACCTGGTAATAATAGTAA+CGG - chr3_1:86414960-86414979 None:intergenic 25.0%
! TAATAGATCGAGAACAAAAA+AGG - chr3_1:86414992-86415011 None:intergenic 25.0%
! TTAAATTCATCCTAATTCGA+AGG - chr3_1:86415050-86415069 None:intergenic 25.0%
! TTCGAATTAGGATGAATTTA+AGG + chr3_1:86415049-86415068 Msa0383490:intron 25.0%
!! TAACAGAATAGAAAAAGCAT+TGG + chr3_1:86415238-86415257 Msa0383490:intron 25.0%
! GATAATCAAAAAAGAAATGC+AGG - chr3_1:86415399-86415418 None:intergenic 25.0%
! CAAGCTGTTAAATTTGTATA+TGG - chr3_1:86415437-86415456 None:intergenic 25.0%
!! TACAAATTTAACAGCTTGTT+TGG + chr3_1:86415439-86415458 Msa0383490:intron 25.0%
!! AGGAACGAATTTTATCTTTA+AGG + chr3_1:86415832-86415851 Msa0383490:CDS 25.0%
!! GGAACGAATTTTATCTTTAA+GGG + chr3_1:86415833-86415852 Msa0383490:CDS 25.0%
! TATATACACAATAACAGATG+TGG + chr3_1:86416061-86416080 Msa0383490:CDS 25.0%
! AGATTAAGCAACTAAAATCT+AGG - chr3_1:86416282-86416301 None:intergenic 25.0%
!!! TTTTGTTTTCAACATCGAAT+AGG - chr3_1:86416404-86416423 None:intergenic 25.0%
! ATAATAGTAACGGAAGGATT+CGG - chr3_1:86414950-86414969 None:intergenic 30.0%
AAAAGGTTAAGTAAGTTACC+TGG - chr3_1:86414975-86414994 None:intergenic 30.0%
! GATTTTTGTTCCTTCGAATT+AGG + chr3_1:86415037-86415056 Msa0383490:intron 30.0%
!! AAAAAGCATTGGAACCAATT+TGG + chr3_1:86415249-86415268 Msa0383490:intron 30.0%
TATTCAATCCTTCTTTGCTT+CGG + chr3_1:86415353-86415372 Msa0383490:intron 30.0%
TTGTTTGGTTAGATGAAAGT+AGG + chr3_1:86415454-86415473 Msa0383490:intron 30.0%
AAGATTAAGTTTGCCGATAT+TGG + chr3_1:86415711-86415730 Msa0383490:CDS 30.0%
AATTCGTTCCTTAACATACT+CGG - chr3_1:86415823-86415842 None:intergenic 30.0%
! TCAATACCAAAATGTTTCTG+TGG + chr3_1:86415869-86415888 Msa0383490:CDS 30.0%
!! TTCTCTTTAAAATGAGGATC+GGG - chr3_1:86415969-86415988 None:intergenic 30.0%
!! CTTCTCTTTAAAATGAGGAT+CGG - chr3_1:86415970-86415989 None:intergenic 30.0%
!! TGGTTCTTCTCTTTAAAATG+AGG - chr3_1:86415975-86415994 None:intergenic 30.0%
CATACTCATCTAGTAAGAAT+GGG - chr3_1:86416016-86416035 None:intergenic 30.0%
! TATGCTTTTGTTCTTGAGAT+TGG + chr3_1:86416032-86416051 Msa0383490:CDS 30.0%
AAATGAACCAAAATTGTCAC+TGG - chr3_1:86416473-86416492 None:intergenic 30.0%
! ATAATAGTAACGGAAGGATT+CGG - chr3_1:86414950-86414969 None:intergenic 30.0%
AAAAGGTTAAGTAAGTTACC+TGG - chr3_1:86414975-86414994 None:intergenic 30.0%
! GATTTTTGTTCCTTCGAATT+AGG + chr3_1:86415037-86415056 Msa0383490:intron 30.0%
!! AAAAAGCATTGGAACCAATT+TGG + chr3_1:86415249-86415268 Msa0383490:intron 30.0%
TATTCAATCCTTCTTTGCTT+CGG + chr3_1:86415353-86415372 Msa0383490:intron 30.0%
TTGTTTGGTTAGATGAAAGT+AGG + chr3_1:86415454-86415473 Msa0383490:intron 30.0%
AAGATTAAGTTTGCCGATAT+TGG + chr3_1:86415711-86415730 Msa0383490:CDS 30.0%
AATTCGTTCCTTAACATACT+CGG - chr3_1:86415823-86415842 None:intergenic 30.0%
! TCAATACCAAAATGTTTCTG+TGG + chr3_1:86415869-86415888 Msa0383490:CDS 30.0%
!! TTCTCTTTAAAATGAGGATC+GGG - chr3_1:86415969-86415988 None:intergenic 30.0%
!! CTTCTCTTTAAAATGAGGAT+CGG - chr3_1:86415970-86415989 None:intergenic 30.0%
!! TGGTTCTTCTCTTTAAAATG+AGG - chr3_1:86415975-86415994 None:intergenic 30.0%
CATACTCATCTAGTAAGAAT+GGG - chr3_1:86416016-86416035 None:intergenic 30.0%
! TATGCTTTTGTTCTTGAGAT+TGG + chr3_1:86416032-86416051 Msa0383490:CDS 30.0%
AAATGAACCAAAATTGTCAC+TGG - chr3_1:86416473-86416492 None:intergenic 30.0%
TCCTTCAAAAGCAGCTTATA+GGG - chr3_1:86414925-86414944 None:intergenic 35.0%
ATCCTTCAAAAGCAGCTTAT+AGG - chr3_1:86414926-86414945 None:intergenic 35.0%
! CTGGTAATAATAGTAACGGA+AGG - chr3_1:86414956-86414975 None:intergenic 35.0%
CTTCCGTTACTATTATTACC+AGG + chr3_1:86414954-86414973 Msa0383490:five_prime_UTR 35.0%
ATCTTTCTAACCATTTGCGT+AGG + chr3_1:86415015-86415034 Msa0383490:intron 35.0%
GAACAAAAATCCTACGCAAA+TGG - chr3_1:86415028-86415047 None:intergenic 35.0%
TCAACATTCAGTAAGTCAAC+AGG + chr3_1:86415537-86415556 Msa0383490:CDS 35.0%
! TTCCCAGAAACATTGATGAT+CGG + chr3_1:86415774-86415793 Msa0383490:CDS 35.0%
TTCCGATCATCAATGTTTCT+GGG - chr3_1:86415779-86415798 None:intergenic 35.0%
ATTCCGATCATCAATGTTTC+TGG - chr3_1:86415780-86415799 None:intergenic 35.0%
! AGAAACATTGATGATCGGAA+TGG + chr3_1:86415779-86415798 Msa0383490:CDS 35.0%
! TAAAGTGTCCGAGTATGTTA+AGG + chr3_1:86415812-86415831 Msa0383490:CDS 35.0%
!!! GAAACATTTTGGTATTGACC+TGG - chr3_1:86415867-86415886 None:intergenic 35.0%
TGTGCTTTCTCAAAGTGATT+GGG - chr3_1:86415921-86415940 None:intergenic 35.0%
TTGTGCTTTCTCAAAGTGAT+TGG - chr3_1:86415922-86415941 None:intergenic 35.0%
GCATACTCATCTAGTAAGAA+TGG - chr3_1:86416017-86416036 None:intergenic 35.0%
ATAACAGATGTGGAAGAACT+TGG + chr3_1:86416071-86416090 Msa0383490:CDS 35.0%
TAACAGATGTGGAAGAACTT+GGG + chr3_1:86416072-86416091 Msa0383490:CDS 35.0%
TCAGTCAAAGGTTCAAACAA+CGG - chr3_1:86416128-86416147 None:intergenic 35.0%
TCAAGTTCTTTCTCAGTCAA+AGG - chr3_1:86416140-86416159 None:intergenic 35.0%
AGTTGCTTAATCTAATGTGC+TGG + chr3_1:86416289-86416308 Msa0383490:three_prime_UTR 35.0%
GTTGCTTAATCTAATGTGCT+GGG + chr3_1:86416290-86416309 Msa0383490:three_prime_UTR 35.0%
GTTGCTACAGAAGAATCATA+TGG + chr3_1:86416326-86416345 Msa0383490:three_prime_UTR 35.0%
ACAGAAGAATCATATGGTCT+TGG + chr3_1:86416332-86416351 Msa0383490:three_prime_UTR 35.0%
TCACTGGCAACAAATCAAAT+AGG - chr3_1:86416457-86416476 None:intergenic 35.0%
! TTTGTTGCCAGTGACAATTT+TGG + chr3_1:86416463-86416482 Msa0383490:three_prime_UTR 35.0%
TCCTTCAAAAGCAGCTTATA+GGG - chr3_1:86414925-86414944 None:intergenic 35.0%
ATCCTTCAAAAGCAGCTTAT+AGG - chr3_1:86414926-86414945 None:intergenic 35.0%
! CTGGTAATAATAGTAACGGA+AGG - chr3_1:86414956-86414975 None:intergenic 35.0%
CTTCCGTTACTATTATTACC+AGG + chr3_1:86414954-86414973 Msa0383490:five_prime_UTR 35.0%
ATCTTTCTAACCATTTGCGT+AGG + chr3_1:86415015-86415034 Msa0383490:intron 35.0%
GAACAAAAATCCTACGCAAA+TGG - chr3_1:86415028-86415047 None:intergenic 35.0%
TCAACATTCAGTAAGTCAAC+AGG + chr3_1:86415537-86415556 Msa0383490:CDS 35.0%
! TTCCCAGAAACATTGATGAT+CGG + chr3_1:86415774-86415793 Msa0383490:CDS 35.0%
TTCCGATCATCAATGTTTCT+GGG - chr3_1:86415779-86415798 None:intergenic 35.0%
ATTCCGATCATCAATGTTTC+TGG - chr3_1:86415780-86415799 None:intergenic 35.0%
! AGAAACATTGATGATCGGAA+TGG + chr3_1:86415779-86415798 Msa0383490:CDS 35.0%
! TAAAGTGTCCGAGTATGTTA+AGG + chr3_1:86415812-86415831 Msa0383490:CDS 35.0%
!!! GAAACATTTTGGTATTGACC+TGG - chr3_1:86415867-86415886 None:intergenic 35.0%
TGTGCTTTCTCAAAGTGATT+GGG - chr3_1:86415921-86415940 None:intergenic 35.0%
TTGTGCTTTCTCAAAGTGAT+TGG - chr3_1:86415922-86415941 None:intergenic 35.0%
GCATACTCATCTAGTAAGAA+TGG - chr3_1:86416017-86416036 None:intergenic 35.0%
ATAACAGATGTGGAAGAACT+TGG + chr3_1:86416071-86416090 Msa0383490:CDS 35.0%
TAACAGATGTGGAAGAACTT+GGG + chr3_1:86416072-86416091 Msa0383490:CDS 35.0%
TCAGTCAAAGGTTCAAACAA+CGG - chr3_1:86416128-86416147 None:intergenic 35.0%
TCAAGTTCTTTCTCAGTCAA+AGG - chr3_1:86416140-86416159 None:intergenic 35.0%
AGTTGCTTAATCTAATGTGC+TGG + chr3_1:86416289-86416308 Msa0383490:three_prime_UTR 35.0%
GTTGCTTAATCTAATGTGCT+GGG + chr3_1:86416290-86416309 Msa0383490:three_prime_UTR 35.0%
GTTGCTACAGAAGAATCATA+TGG + chr3_1:86416326-86416345 Msa0383490:three_prime_UTR 35.0%
ACAGAAGAATCATATGGTCT+TGG + chr3_1:86416332-86416351 Msa0383490:three_prime_UTR 35.0%
TCACTGGCAACAAATCAAAT+AGG - chr3_1:86416457-86416476 None:intergenic 35.0%
! TTTGTTGCCAGTGACAATTT+TGG + chr3_1:86416463-86416482 Msa0383490:three_prime_UTR 35.0%
!!! TCCCTATAAGCTGCTTTTGA+AGG + chr3_1:86414921-86414940 Msa0383490:five_prime_UTR 40.0%
ATTAACAGCCGAAGCAAAGA+AGG - chr3_1:86415364-86415383 None:intergenic 40.0%
TCAACATGACTGGGTGATAA+CGG - chr3_1:86415633-86415652 None:intergenic 40.0%
AGGGAATAGTCAACATGACT+GGG - chr3_1:86415642-86415661 None:intergenic 40.0%
!! AAAGAACTGAGGGTAATGGA+GGG - chr3_1:86415661-86415680 None:intergenic 40.0%
TCCAAAACCACAGCCAATAT+CGG - chr3_1:86415727-86415746 None:intergenic 40.0%
!!! ATATTGGCTGTGGTTTTGGA+GGG + chr3_1:86415727-86415746 Msa0383490:CDS 40.0%
! TCTTTAAGGGTAGCAAATCC+AGG + chr3_1:86415846-86415865 Msa0383490:CDS 40.0%
! ACCAAAATGTTTCTGTGGTG+CGG + chr3_1:86415874-86415893 Msa0383490:CDS 40.0%
GTGATTGGGAATGTACTTCA+TGG - chr3_1:86415907-86415926 None:intergenic 40.0%
TAAAATGAGGATCGGGAAAC+AGG - chr3_1:86415962-86415981 None:intergenic 40.0%
! GCTTTTGTTCTTGAGATTGG+TGG + chr3_1:86416035-86416054 Msa0383490:CDS 40.0%
AACAGATGTGGAAGAACTTG+GGG + chr3_1:86416073-86416092 Msa0383490:CDS 40.0%
GGACTGGATGAAATCTTGTT+TGG + chr3_1:86416094-86416113 Msa0383490:CDS 40.0%
CAGTCAAAGGTTCAAACAAC+GGG - chr3_1:86416127-86416146 None:intergenic 40.0%
GAAAGAACTTGAAGCAGATC+CGG + chr3_1:86416148-86416167 Msa0383490:CDS 40.0%
GAGCTTAAAAGCTTAACAGC+CGG - chr3_1:86416170-86416189 None:intergenic 40.0%
CAAAAGGTTGCTAGAAACGA+GGG + chr3_1:86416206-86416225 Msa0383490:CDS 40.0%
TATCATGCAGAGTGTAGTTC+AGG + chr3_1:86416425-86416444 Msa0383490:three_prime_UTR 40.0%
!!! TCCCTATAAGCTGCTTTTGA+AGG + chr3_1:86414921-86414940 Msa0383490:five_prime_UTR 40.0%
ATTAACAGCCGAAGCAAAGA+AGG - chr3_1:86415364-86415383 None:intergenic 40.0%
TCAACATGACTGGGTGATAA+CGG - chr3_1:86415633-86415652 None:intergenic 40.0%
AGGGAATAGTCAACATGACT+GGG - chr3_1:86415642-86415661 None:intergenic 40.0%
!! AAAGAACTGAGGGTAATGGA+GGG - chr3_1:86415661-86415680 None:intergenic 40.0%
TCCAAAACCACAGCCAATAT+CGG - chr3_1:86415727-86415746 None:intergenic 40.0%
!!! ATATTGGCTGTGGTTTTGGA+GGG + chr3_1:86415727-86415746 Msa0383490:CDS 40.0%
! TCTTTAAGGGTAGCAAATCC+AGG + chr3_1:86415846-86415865 Msa0383490:CDS 40.0%
! ACCAAAATGTTTCTGTGGTG+CGG + chr3_1:86415874-86415893 Msa0383490:CDS 40.0%
GTGATTGGGAATGTACTTCA+TGG - chr3_1:86415907-86415926 None:intergenic 40.0%
TAAAATGAGGATCGGGAAAC+AGG - chr3_1:86415962-86415981 None:intergenic 40.0%
! GCTTTTGTTCTTGAGATTGG+TGG + chr3_1:86416035-86416054 Msa0383490:CDS 40.0%
AACAGATGTGGAAGAACTTG+GGG + chr3_1:86416073-86416092 Msa0383490:CDS 40.0%
GGACTGGATGAAATCTTGTT+TGG + chr3_1:86416094-86416113 Msa0383490:CDS 40.0%
CAGTCAAAGGTTCAAACAAC+GGG - chr3_1:86416127-86416146 None:intergenic 40.0%
GAAAGAACTTGAAGCAGATC+CGG + chr3_1:86416148-86416167 Msa0383490:CDS 40.0%
GAGCTTAAAAGCTTAACAGC+CGG - chr3_1:86416170-86416189 None:intergenic 40.0%
CAAAAGGTTGCTAGAAACGA+GGG + chr3_1:86416206-86416225 Msa0383490:CDS 40.0%
TATCATGCAGAGTGTAGTTC+AGG + chr3_1:86416425-86416444 Msa0383490:three_prime_UTR 40.0%
TAAACAGACATGCCTGAGAC+TGG + chr3_1:86415507-86415526 Msa0383490:intron 45.0%
GTTGAATTTCCACCAGTCTC+AGG - chr3_1:86415522-86415541 None:intergenic 45.0%
GAGGGAATAGTCAACATGAC+TGG - chr3_1:86415643-86415662 None:intergenic 45.0%
! GAAAGAACTGAGGGTAATGG+AGG - chr3_1:86415662-86415681 None:intergenic 45.0%
AGGGAAAGAACTGAGGGTAA+TGG - chr3_1:86415665-86415684 None:intergenic 45.0%
CTATCAGCTTTCTCAGACGA+GGG - chr3_1:86415684-86415703 None:intergenic 45.0%
ACTATCAGCTTTCTCAGACG+AGG - chr3_1:86415685-86415704 None:intergenic 45.0%
! AAGTTTGCCGATATTGGCTG+TGG + chr3_1:86415717-86415736 Msa0383490:CDS 45.0%
!!! GATATTGGCTGTGGTTTTGG+AGG + chr3_1:86415726-86415745 Msa0383490:CDS 45.0%
!! CAATGTTTCTGGGAACAGAG+TGG - chr3_1:86415769-86415788 None:intergenic 45.0%
! TCCGCACCACAGAAACATTT+TGG - chr3_1:86415878-86415897 None:intergenic 45.0%
TTAAGCTCTGCCACTGAAGA+AGG + chr3_1:86416182-86416201 Msa0383490:CDS 45.0%
!! AACCTTTTGGCCTTCTTCAG+TGG - chr3_1:86416195-86416214 None:intergenic 45.0%
!!! CCTCGTTTCTAGCAACCTTT+TGG - chr3_1:86416208-86416227 None:intergenic 45.0%
CCAAAAGGTTGCTAGAAACG+AGG + chr3_1:86416205-86416224 Msa0383490:CDS 45.0%
AAACGAGGGACAAACTTTCC+AGG + chr3_1:86416220-86416239 Msa0383490:CDS 45.0%
TAAACAGACATGCCTGAGAC+TGG + chr3_1:86415507-86415526 Msa0383490:intron 45.0%
GTTGAATTTCCACCAGTCTC+AGG - chr3_1:86415522-86415541 None:intergenic 45.0%
GAGGGAATAGTCAACATGAC+TGG - chr3_1:86415643-86415662 None:intergenic 45.0%
! GAAAGAACTGAGGGTAATGG+AGG - chr3_1:86415662-86415681 None:intergenic 45.0%
AGGGAAAGAACTGAGGGTAA+TGG - chr3_1:86415665-86415684 None:intergenic 45.0%
CTATCAGCTTTCTCAGACGA+GGG - chr3_1:86415684-86415703 None:intergenic 45.0%
ACTATCAGCTTTCTCAGACG+AGG - chr3_1:86415685-86415704 None:intergenic 45.0%
! AAGTTTGCCGATATTGGCTG+TGG + chr3_1:86415717-86415736 Msa0383490:CDS 45.0%
!!! GATATTGGCTGTGGTTTTGG+AGG + chr3_1:86415726-86415745 Msa0383490:CDS 45.0%
!! CAATGTTTCTGGGAACAGAG+TGG - chr3_1:86415769-86415788 None:intergenic 45.0%
! TCCGCACCACAGAAACATTT+TGG - chr3_1:86415878-86415897 None:intergenic 45.0%
TTAAGCTCTGCCACTGAAGA+AGG + chr3_1:86416182-86416201 Msa0383490:CDS 45.0%
!! AACCTTTTGGCCTTCTTCAG+TGG - chr3_1:86416195-86416214 None:intergenic 45.0%
!!! CCTCGTTTCTAGCAACCTTT+TGG - chr3_1:86416208-86416227 None:intergenic 45.0%
CCAAAAGGTTGCTAGAAACG+AGG + chr3_1:86416205-86416224 Msa0383490:CDS 45.0%
AAACGAGGGACAAACTTTCC+AGG + chr3_1:86416220-86416239 Msa0383490:CDS 45.0%
! TAGGGAACGAAGTCGCTTTG+CGG - chr3_1:86414907-86414926 None:intergenic 50.0%
GGAAATGAGAGTCACTGAGC+GGG - chr3_1:86415605-86415624 None:intergenic 50.0%
GGGAAATGAGAGTCACTGAG+CGG - chr3_1:86415606-86415625 None:intergenic 50.0%
CAGACGAGGGAAAGAACTGA+GGG - chr3_1:86415671-86415690 None:intergenic 50.0%
TCAGACGAGGGAAAGAACTG+AGG - chr3_1:86415672-86415691 None:intergenic 50.0%
!! GCCGATATTGGCTGTGGTTT+TGG + chr3_1:86415723-86415742 Msa0383490:CDS 50.0%
AAGAGAAGAACCATCGCCGT+CGG + chr3_1:86415982-86416001 Msa0383490:CDS 50.0%
!! AGAATGGGCTGATAACCCGA+CGG - chr3_1:86416001-86416020 None:intergenic 50.0%
ATGTGGAAGAACTTGGGGAC+TGG + chr3_1:86416078-86416097 Msa0383490:CDS 50.0%
TGCCACTGAAGAAGGCCAAA+AGG + chr3_1:86416190-86416209 Msa0383490:CDS 50.0%
CAATGCGTCTGTATACAGCC+TGG - chr3_1:86416241-86416260 None:intergenic 50.0%
! TAGGGAACGAAGTCGCTTTG+CGG - chr3_1:86414907-86414926 None:intergenic 50.0%
GGAAATGAGAGTCACTGAGC+GGG - chr3_1:86415605-86415624 None:intergenic 50.0%
GGGAAATGAGAGTCACTGAG+CGG - chr3_1:86415606-86415625 None:intergenic 50.0%
CAGACGAGGGAAAGAACTGA+GGG - chr3_1:86415671-86415690 None:intergenic 50.0%
TCAGACGAGGGAAAGAACTG+AGG - chr3_1:86415672-86415691 None:intergenic 50.0%
!! GCCGATATTGGCTGTGGTTT+TGG + chr3_1:86415723-86415742 Msa0383490:CDS 50.0%
AAGAGAAGAACCATCGCCGT+CGG + chr3_1:86415982-86416001 Msa0383490:CDS 50.0%
!! AGAATGGGCTGATAACCCGA+CGG - chr3_1:86416001-86416020 None:intergenic 50.0%
ATGTGGAAGAACTTGGGGAC+TGG + chr3_1:86416078-86416097 Msa0383490:CDS 50.0%
TGCCACTGAAGAAGGCCAAA+AGG + chr3_1:86416190-86416209 Msa0383490:CDS 50.0%
CAATGCGTCTGTATACAGCC+TGG - chr3_1:86416241-86416260 None:intergenic 50.0%
! AGTCGCTTTGCGGAGCTTCA+GGG - chr3_1:86414897-86414916 None:intergenic 55.0%
! AAGTCGCTTTGCGGAGCTTC+AGG - chr3_1:86414898-86414917 None:intergenic 55.0%
ACAGACATGCCTGAGACTGG+TGG + chr3_1:86415510-86415529 Msa0383490:intron 55.0%
!! GCTCGATAGAAGCGCTTTCG+AGG - chr3_1:86415567-86415586 None:intergenic 55.0%
!! GACTGGGTGATAACGGCACA+GGG - chr3_1:86415626-86415645 None:intergenic 55.0%
!! TGACTGGGTGATAACGGCAC+AGG - chr3_1:86415627-86415646 None:intergenic 55.0%
AGAGAAGAACCATCGCCGTC+GGG + chr3_1:86415983-86416002 Msa0383490:CDS 55.0%
! AGTCGCTTTGCGGAGCTTCA+GGG - chr3_1:86414897-86414916 None:intergenic 55.0%
! AAGTCGCTTTGCGGAGCTTC+AGG - chr3_1:86414898-86414917 None:intergenic 55.0%
ACAGACATGCCTGAGACTGG+TGG + chr3_1:86415510-86415529 Msa0383490:intron 55.0%
!! GCTCGATAGAAGCGCTTTCG+AGG - chr3_1:86415567-86415586 None:intergenic 55.0%
!! GACTGGGTGATAACGGCACA+GGG - chr3_1:86415626-86415645 None:intergenic 55.0%
!! TGACTGGGTGATAACGGCAC+AGG - chr3_1:86415627-86415646 None:intergenic 55.0%
AGAGAAGAACCATCGCCGTC+GGG + chr3_1:86415983-86416002 Msa0383490:CDS 55.0%
! GTCGCTTTGCGGAGCTTCAG+GGG - chr3_1:86414896-86414915 None:intergenic 60.0%
! GTCGCTTTGCGGAGCTTCAG+GGG - chr3_1:86414896-86414915 None:intergenic 60.0%
CGGAGCTTCAGGGGTAGCAG+CGG - chr3_1:86414887-86414906 None:intergenic 65.0%
GGCTGATAACCCGACGGCGA+TGG - chr3_1:86415995-86416014 None:intergenic 65.0%
CGGAGCTTCAGGGGTAGCAG+CGG - chr3_1:86414887-86414906 None:intergenic 65.0%
GGCTGATAACCCGACGGCGA+TGG - chr3_1:86415995-86416014 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 86414879 86416535 86414879 ID=Msa0383490;Name=Msa0383490
chr3_1 mRNA 86414879 86416535 86414879 ID=Msa0383490-mRNA-1;Parent=Msa0383490;Name=Msa0383490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=97|0|0.5|1|0|0.5|2|252|255
chr3_1 exon 86414879 86414975 86414879 ID=Msa0383490-mRNA-1:exon:22834;Parent=Msa0383490-mRNA-1
chr3_1 exon 86415516 86416535 86415516 ID=Msa0383490-mRNA-1:exon:22835;Parent=Msa0383490-mRNA-1
chr3_1 five_prime_UTR 86414879 86414975 86414879 ID=Msa0383490-mRNA-1:five_prime_utr;Parent=Msa0383490-mRNA-1
chr3_1 CDS 86415516 86416283 86415516 ID=Msa0383490-mRNA-1:cds;Parent=Msa0383490-mRNA-1
chr3_1 three_prime_UTR 86416284 86416535 86416284 ID=Msa0383490-mRNA-1:three_prime_utr;Parent=Msa0383490-mRNA-1
Gene Sequence

>Msa0383490

ATGCCTGAGACTGGTGGAAATTCAACATTCAGTAAGTCAACAGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAACCCGCTCAGTGACTCTCATTTCCCTGTGCCGTTATCACCCAGTCATGTTGACTATTCCCTCCATTACCCTCAGTTCTTTCCCTCGTCTGAGAAAGCTGATAGTTGCAAAAAGATTAAGTTTGCCGATATTGGCTGTGGTTTTGGAGGGTTGCTCATCAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATCGGAATGGAACTTAGAGATAAAGTGTCCGAGTATGTTAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTGCGGACTAACTCCATGAAGTACATTCCCAATCACTTTGAGAAAGCACAACTCTCAAAGATGTTTTTCCTGTTTCCCGATCCTCATTTTAAAGAGAAGAACCATCGCCGTCGGGTTATCAGCCCATTCTTACTAGATGAGTATGCTTTTGTTCTTGAGATTGGTGGAATTATATACACAATAACAGATGTGGAAGAACTTGGGGACTGGATGAAATCTTGTTTGGAGAATCACCCGTTGTTTGAACCTTTGACTGAGAAAGAACTTGAAGCAGATCCGGCTGTTAAGCTTTTAAGCTCTGCCACTGAAGAAGGCCAAAAGGTTGCTAGAAACGAGGGACAAACTTTCCAGGCTGTATACAGACGCATTGCAGCATCTGATCAAATATCCTAG

Protein sequence

>Msa0383490

MPETGGNSTFSKSTGLPRKRFYRARAHSNPLSDSHFPVPLSPSHVDYSLHYPQFFPSSEKADSCKKIKFADIGCGFGGLLISLSTLFPETLMIGMELRDKVSEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNHFEKAQLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAFVLEIGGIIYTITDVEELGDWMKSCLENHPLFEPLTEKELEADPAVKLLSSATEEGQKVARNEGQTFQAVYRRIAASDQIS*