AlfalfaGEDB | Msa1416140

M. sativa cultivar zhongmu-4 / Msa1416140

KEGG: K03439
GO: GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008176 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0036265 GO:0043170 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0106004 GO:0140098 GO:0140101 GO:1901360 GO:1902494 GO:1990234
PFAM: PF02390.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1416140	sp\|Q8GXB7\|TRMB_ARATH	79.835	243	46	2	8	249	8	248	1.15e-145	410

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1416140	G7J2W7	99.216	255	2	0	1	255	1	255	0.0	528

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004790	Msa1416140	0.827669	1.377332e-54	-8.615850e-47
Msa0029850	Msa1416140	-0.813848	2.078872e-51	-8.615850e-47
Msa0094940	Msa1416140	0.814536	1.465495e-51	-8.615850e-47
Msa1376890	Msa1416140	-0.816293	5.958633e-52	-8.615850e-47
Msa1416140	Msa1451620	0.841278	5.234939e-58	-8.615850e-47
Msa1416140	Msa1457670	0.815124	1.085448e-51	-8.615850e-47
Msa1416140	Msa1461810	0.838198	3.316759e-57	-8.615850e-47
Msa1416140	Msa1466810	-0.817179	3.770873e-52	-8.615850e-47
Msa0621750	Msa1416140	0.815617	8.435143e-52	-8.615850e-47
Msa0647830	Msa1416140	-0.804119	2.517413e-49	-8.615850e-47
Msa0658570	Msa1416140	-0.819507	1.119936e-52	-8.615850e-47
Msa0678820	Msa1416140	-0.813103	3.032029e-51	-8.615850e-47
Msa0169820	Msa1416140	-0.815673	8.193458e-52	-8.615850e-47
Msa0226620	Msa1416140	0.807634	4.592194e-50	-8.615850e-47
Msa0230640	Msa1416140	0.824647	7.206702e-54	-8.615850e-47
Msa1225730	Msa1416140	0.807313	5.372257e-50	-8.615850e-47
Msa1246040	Msa1416140	-0.818042	2.409526e-52	-8.615850e-47
Msa1265340	Msa1416140	0.803477	3.421932e-49	-8.615850e-47
Msa1295540	Msa1416140	0.819223	1.300361e-52	-8.615850e-47
Msa0377610	Msa1416140	0.845313	4.388860e-59	-8.615850e-47
Msa0381600	Msa1416140	0.822726	2.029872e-53	-8.615850e-47
Msa0383490	Msa1416140	0.996305	7.383887e-226	-8.615850e-47
Msa0388540	Msa1416140	0.834011	3.834842e-56	-8.615850e-47
Msa0426820	Msa1416140	0.844922	5.600063e-59	-8.615850e-47
Msa0444750	Msa1416140	0.819872	9.242393e-53	-8.615850e-47
Msa0467740	Msa1416140	0.877767	4.824250e-69	-8.615850e-47
Msa0469940	Msa1416140	0.812303	4.537030e-51	-8.615850e-47
Msa0998890	Msa1416140	0.814982	1.167343e-51	-8.615850e-47
Msa1041600	Msa1416140	0.839354	1.666398e-57	-8.615850e-47
Msa1068200	Msa1416140	0.813280	2.771898e-51	-8.615850e-47
Msa1075080	Msa1416140	0.842860	1.997613e-58	-8.615850e-47
Msa1075220	Msa1416140	0.840587	7.949815e-58	-8.615850e-47
Msa0260270	Msa1416140	0.826546	2.556695e-54	-8.615850e-47
Msa0338000	Msa1416140	-0.816018	6.863292e-52	-8.615850e-47
Msa0350320	Msa1416140	0.801195	1.009812e-48	-8.615850e-47
Msa1116130	Msa1416140	0.822303	2.545816e-53	-8.615850e-47
Msa1139000	Msa1416140	0.851392	9.146868e-61	-8.615850e-47
Msa1156340	Msa1416140	0.816040	6.787639e-52	-8.615850e-47
Msa1162550	Msa1416140	0.840956	6.362503e-58	-8.615850e-47
Msa1165700	Msa1416140	0.827995	1.149767e-54	-8.615850e-47
Msa1166500	Msa1416140	0.838885	2.203945e-57	-8.615850e-47
Msa1202770	Msa1416140	0.821254	4.451955e-53	-8.615850e-47
Msa1209560	Msa1416140	-0.813666	2.280680e-51	-8.615850e-47
Msa0514130	Msa1416140	0.870310	1.607365e-66	-8.615850e-47
Msa0532810	Msa1416140	0.850210	1.967136e-60	-8.615850e-47
Msa0574850	Msa1416140	-0.802535	5.358238e-49	-8.615850e-47
Msa0865510	Msa1416140	0.802914	4.474864e-49	-8.615850e-47
Msa0881210	Msa1416140	0.809288	2.037701e-50	-8.615850e-47
Msa0942080	Msa1416140	0.821876	3.197415e-53	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1416140	MtrunA17_Chr3g0139341	99.216	255	2	0	1	255	1	255	0.0	528

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1416140	AT5G24840.1	79.835	243	46	2	8	249	8	248	1.17e-146	410

Find 86 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATTAAGTTTGCCGATAT+TGG	0.221557	tig0024317:+72646	Msa1416140:CDS
TCCGCACCACAGAAACATTT+TGG	0.250656	tig0024317:-72810	None:intergenic
ATTCCGATCATCAATGTTTC+TGG	0.252188	tig0024317:-72712	None:intergenic
AAGTCGCTTTGCGGAGCTTC+AGG	0.255162	tig0024317:-71849	None:intergenic
GCCGATATTGGCTGTGGTTT+TGG	0.274610	tig0024317:+72658	Msa1416140:CDS
ATCCTTCAAAAGCAGCTTAT+AGG	0.280660	tig0024317:-71877	None:intergenic
CCTCGTTTCTAGCAACCTTT+TGG	0.326676	tig0024317:-73140	None:intergenic
TCCTTCAAAAGCAGCTTATA+GGG	0.360306	tig0024317:-71876	None:intergenic
TAAAATGAGGATCGGGAAAC+AGG	0.368009	tig0024317:-72894	None:intergenic
TCACTGGCAACAAATCAAAT+AGG	0.376240	tig0024317:-73389	None:intergenic
TATCATGCAGAGTGTAGTTC+AGG	0.385450	tig0024317:+73360	Msa1416140:three_prime_UTR
TTCTCTTTAAAATGAGGATC+GGG	0.398927	tig0024317:-72901	None:intergenic
GCATACTCATCTAGTAAGAA+TGG	0.400409	tig0024317:-72949	None:intergenic
AAACGAGGGACAAACTTTCC+AGG	0.404412	tig0024317:+73155	Msa1416140:CDS
TTGTGCTTTCTCAAAGTGAT+TGG	0.404689	tig0024317:-72854	None:intergenic
GGACTGGATGAAATCTTGTT+TGG	0.409104	tig0024317:+73029	Msa1416140:CDS
TTTGTTGCCAGTGACAATTT+TGG	0.411251	tig0024317:+73398	Msa1416140:three_prime_UTR
AAAGTGAATAATCATATTGA+TGG	0.414368	tig0024317:-73435	None:intergenic
TCCAAAACCACAGCCAATAT+CGG	0.417152	tig0024317:-72659	None:intergenic
AGTTGCTTAATCTAATGTGC+TGG	0.421270	tig0024317:+73224	Msa1416140:three_prime_UTR
TTAAGCTCTGCCACTGAAGA+AGG	0.428496	tig0024317:+73117	Msa1416140:CDS
TGTGCTTTCTCAAAGTGATT+GGG	0.444654	tig0024317:-72853	None:intergenic
TCAACATTCAGTAAGTCAAC+AGG	0.452366	tig0024317:+72472	Msa1416140:CDS
GTGATTGGGAATGTACTTCA+TGG	0.454613	tig0024317:-72839	None:intergenic
GTTGAATTTCCACCAGTCTC+AGG	0.455044	tig0024317:-72454	None:intergenic
TGGTTCTTCTCTTTAAAATG+AGG	0.455252	tig0024317:-72907	None:intergenic
CAGTCAAAGGTTCAAACAAC+GGG	0.464877	tig0024317:-73059	None:intergenic
GTTGCTACAGAAGAATCATA+TGG	0.465307	tig0024317:+73261	Msa1416140:three_prime_UTR
AGATTAAGCAACTAAAATCT+AGG	0.465505	tig0024317:-73214	None:intergenic
TAAAGTGTCCGAGTATGTTA+AGG	0.471708	tig0024317:+72747	Msa1416140:CDS
TCAAGTTCTTTCTCAGTCAA+AGG	0.473439	tig0024317:-73072	None:intergenic
ATAATAGTAACGGAAGGATT+CGG	0.474029	tig0024317:-71901	None:intergenic
ATAACAGATGTGGAAGAACT+TGG	0.476880	tig0024317:+73006	Msa1416140:CDS
TAGGGAACGAAGTCGCTTTG+CGG	0.476907	tig0024317:-71858	None:intergenic
GCTCGATAGAAGCGCTTTCG+AGG	0.477207	tig0024317:-72499	None:intergenic
ACAGAAGAATCATATGGTCT+TGG	0.480167	tig0024317:+73267	Msa1416140:three_prime_UTR
TCTTTAAGGGTAGCAAATCC+AGG	0.486768	tig0024317:+72781	Msa1416140:CDS
GAAAGAACTTGAAGCAGATC+CGG	0.487319	tig0024317:+73083	Msa1416140:CDS
TTCCGATCATCAATGTTTCT+GGG	0.488618	tig0024317:-72711	None:intergenic
AGAGAAGAACCATCGCCGTC+GGG	0.492041	tig0024317:+72918	Msa1416140:CDS
GAGGGAATAGTCAACATGAC+TGG	0.493842	tig0024317:-72575	None:intergenic
CTTCTCTTTAAAATGAGGAT+CGG	0.494124	tig0024317:-72902	None:intergenic
GTTGCTTAATCTAATGTGCT+GGG	0.495833	tig0024317:+73225	Msa1416140:three_prime_UTR
CATACTCATCTAGTAAGAAT+GGG	0.503167	tig0024317:-72948	None:intergenic
AGTCGCTTTGCGGAGCTTCA+GGG	0.504230	tig0024317:-71848	None:intergenic
TGCCACTGAAGAAGGCCAAA+AGG	0.507812	tig0024317:+73125	Msa1416140:CDS
TCAACATGACTGGGTGATAA+CGG	0.513146	tig0024317:-72565	None:intergenic
AGGGAAAGAACTGAGGGTAA+TGG	0.514591	tig0024317:-72597	None:intergenic
AAGTTTGCCGATATTGGCTG+TGG	0.514722	tig0024317:+72652	Msa1416140:CDS
CTTCCGTTACTATTATTACC+AGG	0.515137	tig0024317:+71908	Msa1416140:five_prime_UTR
GAAAGAACTGAGGGTAATGG+AGG	0.517145	tig0024317:-72594	None:intergenic
TAACAGATGTGGAAGAACTT+GGG	0.526686	tig0024317:+73007	Msa1416140:CDS
AAATGAACCAAAATTGTCAC+TGG	0.530056	tig0024317:-73405	None:intergenic
AAGAGAAGAACCATCGCCGT+CGG	0.534336	tig0024317:+72917	Msa1416140:CDS
CTATCAGCTTTCTCAGACGA+GGG	0.534942	tig0024317:-72616	None:intergenic
CAATGCGTCTGTATACAGCC+TGG	0.550730	tig0024317:-73173	None:intergenic
GGCTGATAACCCGACGGCGA+TGG	0.555787	tig0024317:-72927	None:intergenic
CGGAGCTTCAGGGGTAGCAG+CGG	0.557750	tig0024317:-71838	None:intergenic
GTCGCTTTGCGGAGCTTCAG+GGG	0.561904	tig0024317:-71847	None:intergenic
TAAACAGACATGCCTGAGAC+TGG	0.565306	tig0024317:+72442	Msa1416140:intron
ACCAAAATGTTTCTGTGGTG+CGG	0.567556	tig0024317:+72809	Msa1416140:CDS
AATTCGTTCCTTAACATACT+CGG	0.570956	tig0024317:-72755	None:intergenic
TTCCCAGAAACATTGATGAT+CGG	0.572410	tig0024317:+72709	Msa1416140:CDS
GAGCTTAAAAGCTTAACAGC+CGG	0.573038	tig0024317:-73102	None:intergenic
ATGTGGAAGAACTTGGGGAC+TGG	0.574117	tig0024317:+73013	Msa1416140:CDS
TGACTGGGTGATAACGGCAC+AGG	0.576851	tig0024317:-72559	None:intergenic
AGAAACATTGATGATCGGAA+TGG	0.582107	tig0024317:+72714	Msa1416140:CDS
TTACCTGGTAATAATAGTAA+CGG	0.597269	tig0024317:-71911	None:intergenic
AAAGAACTGAGGGTAATGGA+GGG	0.599329	tig0024317:-72593	None:intergenic
TATATACACAATAACAGATG+TGG	0.600775	tig0024317:+72996	Msa1416140:CDS
AACAGATGTGGAAGAACTTG+GGG	0.605004	tig0024317:+73008	Msa1416140:CDS
GGAAATGAGAGTCACTGAGC+GGG	0.605858	tig0024317:-72537	None:intergenic
GACTGGGTGATAACGGCACA+GGG	0.611699	tig0024317:-72558	None:intergenic
TCAGTCAAAGGTTCAAACAA+CGG	0.617042	tig0024317:-73060	None:intergenic
TCAATACCAAAATGTTTCTG+TGG	0.618646	tig0024317:+72804	Msa1416140:CDS
CCAAAAGGTTGCTAGAAACG+AGG	0.621682	tig0024317:+73140	Msa1416140:CDS
AGGGAATAGTCAACATGACT+GGG	0.631622	tig0024317:-72574	None:intergenic
CTGGTAATAATAGTAACGGA+AGG	0.635992	tig0024317:-71907	None:intergenic
ACAGACATGCCTGAGACTGG+TGG	0.638512	tig0024317:+72445	Msa1416140:intron
GGGAAATGAGAGTCACTGAG+CGG	0.640601	tig0024317:-72538	None:intergenic
CAAAAGGTTGCTAGAAACGA+GGG	0.641444	tig0024317:+73141	Msa1416140:CDS
ACTATCAGCTTTCTCAGACG+AGG	0.648094	tig0024317:-72617	None:intergenic
CAATGTTTCTGGGAACAGAG+TGG	0.655902	tig0024317:-72701	None:intergenic
CAGACGAGGGAAAGAACTGA+GGG	0.659441	tig0024317:-72603	None:intergenic
TCAGACGAGGGAAAGAACTG+AGG	0.695327	tig0024317:-72604	None:intergenic
AGAATGGGCTGATAACCCGA+CGG	0.724299	tig0024317:-72933	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AACAAATCATAGAATAAATT+TGG	-	tig0024317:72142-72161	None:intergenic	15.0%
!!	AACAAATCATAGAATAAATT+TGG	-	tig0024317:72142-72161	None:intergenic	15.0%
!!	CAATTATAAAGAAACCAAAT+TGG	-	tig0024317:72201-72220	None:intergenic	20.0%
!!	ATAACTAATTCTAATACACT+AGG	-	tig0024317:72232-72251	None:intergenic	20.0%
!!	TAGTGTATTAGAATTAGTTA+TGG	+	tig0024317:72231-72250	Msa1416140:intron	20.0%
!!	AACTAACTAAATTCATTAGA+AGG	-	tig0024317:72262-72281	None:intergenic	20.0%
!!	AAAGTGAATAATCATATTGA+TGG	-	tig0024317:73438-73457	None:intergenic	20.0%
!!	CAATTATAAAGAAACCAAAT+TGG	-	tig0024317:72201-72220	None:intergenic	20.0%
!!	ATAACTAATTCTAATACACT+AGG	-	tig0024317:72232-72251	None:intergenic	20.0%
!!	TAGTGTATTAGAATTAGTTA+TGG	+	tig0024317:72231-72250	Msa1416140:intron	20.0%
!!	AACTAACTAAATTCATTAGA+AGG	-	tig0024317:72262-72281	None:intergenic	20.0%
!!	AAAGTGAATAATCATATTGA+TGG	-	tig0024317:73438-73457	None:intergenic	20.0%
!	TTACCTGGTAATAATAGTAA+CGG	-	tig0024317:71914-71933	None:intergenic	25.0%
!	TTAAATTCATCCTAATTCGA+AGG	-	tig0024317:71981-72000	None:intergenic	25.0%
!	TTCGAATTAGGATGAATTTA+AGG	+	tig0024317:71980-71999	Msa1416140:intron	25.0%
!!	TAACAGAATAGAAAAAGCAT+TGG	+	tig0024317:72173-72192	Msa1416140:intron	25.0%
!	GATAATCAAAAAAGAAATGC+AGG	-	tig0024317:72334-72353	None:intergenic	25.0%
!	CAAGCTGTTAAATTTGTATA+TGG	-	tig0024317:72372-72391	None:intergenic	25.0%
!!	TACAAATTTAACAGCTTGTT+TGG	+	tig0024317:72374-72393	Msa1416140:intron	25.0%
!!	AGGAACGAATTTTATCTTTA+AGG	+	tig0024317:72767-72786	Msa1416140:CDS	25.0%
!!	GGAACGAATTTTATCTTTAA+GGG	+	tig0024317:72768-72787	Msa1416140:CDS	25.0%
!	TATATACACAATAACAGATG+TGG	+	tig0024317:72996-73015	Msa1416140:CDS	25.0%
!	AGATTAAGCAACTAAAATCT+AGG	-	tig0024317:73217-73236	None:intergenic	25.0%
!!!	TTTTGTTTTCAACATCGAAT+AGG	-	tig0024317:73339-73358	None:intergenic	25.0%
!	TTACCTGGTAATAATAGTAA+CGG	-	tig0024317:71914-71933	None:intergenic	25.0%
!	TTAAATTCATCCTAATTCGA+AGG	-	tig0024317:71981-72000	None:intergenic	25.0%
!	TTCGAATTAGGATGAATTTA+AGG	+	tig0024317:71980-71999	Msa1416140:intron	25.0%
!!	TAACAGAATAGAAAAAGCAT+TGG	+	tig0024317:72173-72192	Msa1416140:intron	25.0%
!	GATAATCAAAAAAGAAATGC+AGG	-	tig0024317:72334-72353	None:intergenic	25.0%
!	CAAGCTGTTAAATTTGTATA+TGG	-	tig0024317:72372-72391	None:intergenic	25.0%
!!	TACAAATTTAACAGCTTGTT+TGG	+	tig0024317:72374-72393	Msa1416140:intron	25.0%
!!	AGGAACGAATTTTATCTTTA+AGG	+	tig0024317:72767-72786	Msa1416140:CDS	25.0%
!!	GGAACGAATTTTATCTTTAA+GGG	+	tig0024317:72768-72787	Msa1416140:CDS	25.0%
!	TATATACACAATAACAGATG+TGG	+	tig0024317:72996-73015	Msa1416140:CDS	25.0%
!	AGATTAAGCAACTAAAATCT+AGG	-	tig0024317:73217-73236	None:intergenic	25.0%
!!!	TTTTGTTTTCAACATCGAAT+AGG	-	tig0024317:73339-73358	None:intergenic	25.0%
!	ATAATAGTAACGGAAGGATT+CGG	-	tig0024317:71904-71923	None:intergenic	30.0%
	AAAAGGTTAAGTAAGTTACC+TGG	-	tig0024317:71929-71948	None:intergenic	30.0%
!	GATTTTTGTTCCTTCGAATT+AGG	+	tig0024317:71968-71987	Msa1416140:intron	30.0%
!!	AAAAAGCATTGGAACCAATT+TGG	+	tig0024317:72184-72203	Msa1416140:intron	30.0%
	TATTCAATCCTTCTTTGCTT+CGG	+	tig0024317:72288-72307	Msa1416140:intron	30.0%
	TTGTTTGGTTAGATGAAAGT+AGG	+	tig0024317:72389-72408	Msa1416140:intron	30.0%
	AAGATTAAGTTTGCCGATAT+TGG	+	tig0024317:72646-72665	Msa1416140:CDS	30.0%
	AATTCGTTCCTTAACATACT+CGG	-	tig0024317:72758-72777	None:intergenic	30.0%
!	TCAATACCAAAATGTTTCTG+TGG	+	tig0024317:72804-72823	Msa1416140:CDS	30.0%
!!	TTCTCTTTAAAATGAGGATC+GGG	-	tig0024317:72904-72923	None:intergenic	30.0%
!!	CTTCTCTTTAAAATGAGGAT+CGG	-	tig0024317:72905-72924	None:intergenic	30.0%
!!	TGGTTCTTCTCTTTAAAATG+AGG	-	tig0024317:72910-72929	None:intergenic	30.0%
	CATACTCATCTAGTAAGAAT+GGG	-	tig0024317:72951-72970	None:intergenic	30.0%
!	TATGCTTTTGTTCTTGAGAT+TGG	+	tig0024317:72967-72986	Msa1416140:CDS	30.0%
	AAATGAACCAAAATTGTCAC+TGG	-	tig0024317:73408-73427	None:intergenic	30.0%
!	ATAATAGTAACGGAAGGATT+CGG	-	tig0024317:71904-71923	None:intergenic	30.0%
	AAAAGGTTAAGTAAGTTACC+TGG	-	tig0024317:71929-71948	None:intergenic	30.0%
!	GATTTTTGTTCCTTCGAATT+AGG	+	tig0024317:71968-71987	Msa1416140:intron	30.0%
!!	AAAAAGCATTGGAACCAATT+TGG	+	tig0024317:72184-72203	Msa1416140:intron	30.0%
	TATTCAATCCTTCTTTGCTT+CGG	+	tig0024317:72288-72307	Msa1416140:intron	30.0%
	TTGTTTGGTTAGATGAAAGT+AGG	+	tig0024317:72389-72408	Msa1416140:intron	30.0%
	AAGATTAAGTTTGCCGATAT+TGG	+	tig0024317:72646-72665	Msa1416140:CDS	30.0%
	AATTCGTTCCTTAACATACT+CGG	-	tig0024317:72758-72777	None:intergenic	30.0%
!	TCAATACCAAAATGTTTCTG+TGG	+	tig0024317:72804-72823	Msa1416140:CDS	30.0%
!!	TTCTCTTTAAAATGAGGATC+GGG	-	tig0024317:72904-72923	None:intergenic	30.0%
!!	CTTCTCTTTAAAATGAGGAT+CGG	-	tig0024317:72905-72924	None:intergenic	30.0%
!!	TGGTTCTTCTCTTTAAAATG+AGG	-	tig0024317:72910-72929	None:intergenic	30.0%
	CATACTCATCTAGTAAGAAT+GGG	-	tig0024317:72951-72970	None:intergenic	30.0%
!	TATGCTTTTGTTCTTGAGAT+TGG	+	tig0024317:72967-72986	Msa1416140:CDS	30.0%
	AAATGAACCAAAATTGTCAC+TGG	-	tig0024317:73408-73427	None:intergenic	30.0%
	TCCTTCAAAAGCAGCTTATA+GGG	-	tig0024317:71879-71898	None:intergenic	35.0%
	ATCCTTCAAAAGCAGCTTAT+AGG	-	tig0024317:71880-71899	None:intergenic	35.0%
!	CTGGTAATAATAGTAACGGA+AGG	-	tig0024317:71910-71929	None:intergenic	35.0%
	CTTCCGTTACTATTATTACC+AGG	+	tig0024317:71908-71927	Msa1416140:five_prime_UTR	35.0%
	ACGCAAATCGAGAACAAAAA+AGG	-	tig0024317:71946-71965	None:intergenic	35.0%
!!	TTTTTGTTCTCGATTTGCGT+AGG	+	tig0024317:71946-71965	Msa1416140:intron	35.0%
	TCAACATTCAGTAAGTCAAC+AGG	+	tig0024317:72472-72491	Msa1416140:CDS	35.0%
!	TTCCCAGAAACATTGATGAT+CGG	+	tig0024317:72709-72728	Msa1416140:CDS	35.0%
	TTCCGATCATCAATGTTTCT+GGG	-	tig0024317:72714-72733	None:intergenic	35.0%
	ATTCCGATCATCAATGTTTC+TGG	-	tig0024317:72715-72734	None:intergenic	35.0%
!	AGAAACATTGATGATCGGAA+TGG	+	tig0024317:72714-72733	Msa1416140:CDS	35.0%
!	TAAAGTGTCCGAGTATGTTA+AGG	+	tig0024317:72747-72766	Msa1416140:CDS	35.0%
!!!	GAAACATTTTGGTATTGACC+TGG	-	tig0024317:72802-72821	None:intergenic	35.0%
	TGTGCTTTCTCAAAGTGATT+GGG	-	tig0024317:72856-72875	None:intergenic	35.0%
	TTGTGCTTTCTCAAAGTGAT+TGG	-	tig0024317:72857-72876	None:intergenic	35.0%
	GCATACTCATCTAGTAAGAA+TGG	-	tig0024317:72952-72971	None:intergenic	35.0%
	ATAACAGATGTGGAAGAACT+TGG	+	tig0024317:73006-73025	Msa1416140:CDS	35.0%
	TAACAGATGTGGAAGAACTT+GGG	+	tig0024317:73007-73026	Msa1416140:CDS	35.0%
	TCAGTCAAAGGTTCAAACAA+CGG	-	tig0024317:73063-73082	None:intergenic	35.0%
	TCAAGTTCTTTCTCAGTCAA+AGG	-	tig0024317:73075-73094	None:intergenic	35.0%
	AGTTGCTTAATCTAATGTGC+TGG	+	tig0024317:73224-73243	Msa1416140:three_prime_UTR	35.0%
	GTTGCTTAATCTAATGTGCT+GGG	+	tig0024317:73225-73244	Msa1416140:three_prime_UTR	35.0%
	GTTGCTACAGAAGAATCATA+TGG	+	tig0024317:73261-73280	Msa1416140:three_prime_UTR	35.0%
	ACAGAAGAATCATATGGTCT+TGG	+	tig0024317:73267-73286	Msa1416140:three_prime_UTR	35.0%
	TCACTGGCAACAAATCAAAT+AGG	-	tig0024317:73392-73411	None:intergenic	35.0%
!	TTTGTTGCCAGTGACAATTT+TGG	+	tig0024317:73398-73417	Msa1416140:three_prime_UTR	35.0%
	TCCTTCAAAAGCAGCTTATA+GGG	-	tig0024317:71879-71898	None:intergenic	35.0%
	ATCCTTCAAAAGCAGCTTAT+AGG	-	tig0024317:71880-71899	None:intergenic	35.0%
!	CTGGTAATAATAGTAACGGA+AGG	-	tig0024317:71910-71929	None:intergenic	35.0%
	CTTCCGTTACTATTATTACC+AGG	+	tig0024317:71908-71927	Msa1416140:five_prime_UTR	35.0%
	ACGCAAATCGAGAACAAAAA+AGG	-	tig0024317:71946-71965	None:intergenic	35.0%
!!	TTTTTGTTCTCGATTTGCGT+AGG	+	tig0024317:71946-71965	Msa1416140:intron	35.0%
	TCAACATTCAGTAAGTCAAC+AGG	+	tig0024317:72472-72491	Msa1416140:CDS	35.0%
!	TTCCCAGAAACATTGATGAT+CGG	+	tig0024317:72709-72728	Msa1416140:CDS	35.0%
	TTCCGATCATCAATGTTTCT+GGG	-	tig0024317:72714-72733	None:intergenic	35.0%
	ATTCCGATCATCAATGTTTC+TGG	-	tig0024317:72715-72734	None:intergenic	35.0%
!	AGAAACATTGATGATCGGAA+TGG	+	tig0024317:72714-72733	Msa1416140:CDS	35.0%
!	TAAAGTGTCCGAGTATGTTA+AGG	+	tig0024317:72747-72766	Msa1416140:CDS	35.0%
!!!	GAAACATTTTGGTATTGACC+TGG	-	tig0024317:72802-72821	None:intergenic	35.0%
	TGTGCTTTCTCAAAGTGATT+GGG	-	tig0024317:72856-72875	None:intergenic	35.0%
	TTGTGCTTTCTCAAAGTGAT+TGG	-	tig0024317:72857-72876	None:intergenic	35.0%
	GCATACTCATCTAGTAAGAA+TGG	-	tig0024317:72952-72971	None:intergenic	35.0%
	ATAACAGATGTGGAAGAACT+TGG	+	tig0024317:73006-73025	Msa1416140:CDS	35.0%
	TAACAGATGTGGAAGAACTT+GGG	+	tig0024317:73007-73026	Msa1416140:CDS	35.0%
	TCAGTCAAAGGTTCAAACAA+CGG	-	tig0024317:73063-73082	None:intergenic	35.0%
	TCAAGTTCTTTCTCAGTCAA+AGG	-	tig0024317:73075-73094	None:intergenic	35.0%
	AGTTGCTTAATCTAATGTGC+TGG	+	tig0024317:73224-73243	Msa1416140:three_prime_UTR	35.0%
	GTTGCTTAATCTAATGTGCT+GGG	+	tig0024317:73225-73244	Msa1416140:three_prime_UTR	35.0%
	GTTGCTACAGAAGAATCATA+TGG	+	tig0024317:73261-73280	Msa1416140:three_prime_UTR	35.0%
	ACAGAAGAATCATATGGTCT+TGG	+	tig0024317:73267-73286	Msa1416140:three_prime_UTR	35.0%
	TCACTGGCAACAAATCAAAT+AGG	-	tig0024317:73392-73411	None:intergenic	35.0%
!	TTTGTTGCCAGTGACAATTT+TGG	+	tig0024317:73398-73417	Msa1416140:three_prime_UTR	35.0%
!!!	TCCCTATAAGCTGCTTTTGA+AGG	+	tig0024317:71875-71894	Msa1416140:five_prime_UTR	40.0%
	ATTAACAGCCGAAGCAAAGA+AGG	-	tig0024317:72299-72318	None:intergenic	40.0%
	TCAACATGACTGGGTGATAA+CGG	-	tig0024317:72568-72587	None:intergenic	40.0%
	AGGGAATAGTCAACATGACT+GGG	-	tig0024317:72577-72596	None:intergenic	40.0%
!!	AAAGAACTGAGGGTAATGGA+GGG	-	tig0024317:72596-72615	None:intergenic	40.0%
	TCCAAAACCACAGCCAATAT+CGG	-	tig0024317:72662-72681	None:intergenic	40.0%
!!!	ATATTGGCTGTGGTTTTGGA+GGG	+	tig0024317:72662-72681	Msa1416140:CDS	40.0%
!	TCTTTAAGGGTAGCAAATCC+AGG	+	tig0024317:72781-72800	Msa1416140:CDS	40.0%
!	ACCAAAATGTTTCTGTGGTG+CGG	+	tig0024317:72809-72828	Msa1416140:CDS	40.0%
	GTGATTGGGAATGTACTTCA+TGG	-	tig0024317:72842-72861	None:intergenic	40.0%
	TAAAATGAGGATCGGGAAAC+AGG	-	tig0024317:72897-72916	None:intergenic	40.0%
!	GCTTTTGTTCTTGAGATTGG+TGG	+	tig0024317:72970-72989	Msa1416140:CDS	40.0%
	AACAGATGTGGAAGAACTTG+GGG	+	tig0024317:73008-73027	Msa1416140:CDS	40.0%
	GGACTGGATGAAATCTTGTT+TGG	+	tig0024317:73029-73048	Msa1416140:CDS	40.0%
	CAGTCAAAGGTTCAAACAAC+GGG	-	tig0024317:73062-73081	None:intergenic	40.0%
	GAAAGAACTTGAAGCAGATC+CGG	+	tig0024317:73083-73102	Msa1416140:CDS	40.0%
	GAGCTTAAAAGCTTAACAGC+CGG	-	tig0024317:73105-73124	None:intergenic	40.0%
	CAAAAGGTTGCTAGAAACGA+GGG	+	tig0024317:73141-73160	Msa1416140:CDS	40.0%
	TATCATGCAGAGTGTAGTTC+AGG	+	tig0024317:73360-73379	Msa1416140:three_prime_UTR	40.0%
!!!	TCCCTATAAGCTGCTTTTGA+AGG	+	tig0024317:71875-71894	Msa1416140:five_prime_UTR	40.0%
	ATTAACAGCCGAAGCAAAGA+AGG	-	tig0024317:72299-72318	None:intergenic	40.0%
	TCAACATGACTGGGTGATAA+CGG	-	tig0024317:72568-72587	None:intergenic	40.0%
	AGGGAATAGTCAACATGACT+GGG	-	tig0024317:72577-72596	None:intergenic	40.0%
!!	AAAGAACTGAGGGTAATGGA+GGG	-	tig0024317:72596-72615	None:intergenic	40.0%
	TCCAAAACCACAGCCAATAT+CGG	-	tig0024317:72662-72681	None:intergenic	40.0%
!!!	ATATTGGCTGTGGTTTTGGA+GGG	+	tig0024317:72662-72681	Msa1416140:CDS	40.0%
!	TCTTTAAGGGTAGCAAATCC+AGG	+	tig0024317:72781-72800	Msa1416140:CDS	40.0%
!	ACCAAAATGTTTCTGTGGTG+CGG	+	tig0024317:72809-72828	Msa1416140:CDS	40.0%
	GTGATTGGGAATGTACTTCA+TGG	-	tig0024317:72842-72861	None:intergenic	40.0%
	TAAAATGAGGATCGGGAAAC+AGG	-	tig0024317:72897-72916	None:intergenic	40.0%
!	GCTTTTGTTCTTGAGATTGG+TGG	+	tig0024317:72970-72989	Msa1416140:CDS	40.0%
	AACAGATGTGGAAGAACTTG+GGG	+	tig0024317:73008-73027	Msa1416140:CDS	40.0%
	GGACTGGATGAAATCTTGTT+TGG	+	tig0024317:73029-73048	Msa1416140:CDS	40.0%
	CAGTCAAAGGTTCAAACAAC+GGG	-	tig0024317:73062-73081	None:intergenic	40.0%
	GAAAGAACTTGAAGCAGATC+CGG	+	tig0024317:73083-73102	Msa1416140:CDS	40.0%
	GAGCTTAAAAGCTTAACAGC+CGG	-	tig0024317:73105-73124	None:intergenic	40.0%
	CAAAAGGTTGCTAGAAACGA+GGG	+	tig0024317:73141-73160	Msa1416140:CDS	40.0%
	TATCATGCAGAGTGTAGTTC+AGG	+	tig0024317:73360-73379	Msa1416140:three_prime_UTR	40.0%
	TAAACAGACATGCCTGAGAC+TGG	+	tig0024317:72442-72461	Msa1416140:intron	45.0%
	GTTGAATTTCCACCAGTCTC+AGG	-	tig0024317:72457-72476	None:intergenic	45.0%
	GAGGGAATAGTCAACATGAC+TGG	-	tig0024317:72578-72597	None:intergenic	45.0%
!	GAAAGAACTGAGGGTAATGG+AGG	-	tig0024317:72597-72616	None:intergenic	45.0%
	AGGGAAAGAACTGAGGGTAA+TGG	-	tig0024317:72600-72619	None:intergenic	45.0%
	CTATCAGCTTTCTCAGACGA+GGG	-	tig0024317:72619-72638	None:intergenic	45.0%
	ACTATCAGCTTTCTCAGACG+AGG	-	tig0024317:72620-72639	None:intergenic	45.0%
!	AAGTTTGCCGATATTGGCTG+TGG	+	tig0024317:72652-72671	Msa1416140:CDS	45.0%
!!!	GATATTGGCTGTGGTTTTGG+AGG	+	tig0024317:72661-72680	Msa1416140:CDS	45.0%
!!	CAATGTTTCTGGGAACAGAG+TGG	-	tig0024317:72704-72723	None:intergenic	45.0%
!	TCCGCACCACAGAAACATTT+TGG	-	tig0024317:72813-72832	None:intergenic	45.0%
	TTAAGCTCTGCCACTGAAGA+AGG	+	tig0024317:73117-73136	Msa1416140:CDS	45.0%
!!	AACCTTTTGGCCTTCTTCAG+TGG	-	tig0024317:73130-73149	None:intergenic	45.0%
!!!	CCTCGTTTCTAGCAACCTTT+TGG	-	tig0024317:73143-73162	None:intergenic	45.0%
	CCAAAAGGTTGCTAGAAACG+AGG	+	tig0024317:73140-73159	Msa1416140:CDS	45.0%
	AAACGAGGGACAAACTTTCC+AGG	+	tig0024317:73155-73174	Msa1416140:CDS	45.0%
	TAAACAGACATGCCTGAGAC+TGG	+	tig0024317:72442-72461	Msa1416140:intron	45.0%
	GTTGAATTTCCACCAGTCTC+AGG	-	tig0024317:72457-72476	None:intergenic	45.0%
	GAGGGAATAGTCAACATGAC+TGG	-	tig0024317:72578-72597	None:intergenic	45.0%
!	GAAAGAACTGAGGGTAATGG+AGG	-	tig0024317:72597-72616	None:intergenic	45.0%
	AGGGAAAGAACTGAGGGTAA+TGG	-	tig0024317:72600-72619	None:intergenic	45.0%
	CTATCAGCTTTCTCAGACGA+GGG	-	tig0024317:72619-72638	None:intergenic	45.0%
	ACTATCAGCTTTCTCAGACG+AGG	-	tig0024317:72620-72639	None:intergenic	45.0%
!	AAGTTTGCCGATATTGGCTG+TGG	+	tig0024317:72652-72671	Msa1416140:CDS	45.0%
!!!	GATATTGGCTGTGGTTTTGG+AGG	+	tig0024317:72661-72680	Msa1416140:CDS	45.0%
!!	CAATGTTTCTGGGAACAGAG+TGG	-	tig0024317:72704-72723	None:intergenic	45.0%
!	TCCGCACCACAGAAACATTT+TGG	-	tig0024317:72813-72832	None:intergenic	45.0%
	TTAAGCTCTGCCACTGAAGA+AGG	+	tig0024317:73117-73136	Msa1416140:CDS	45.0%
!!	AACCTTTTGGCCTTCTTCAG+TGG	-	tig0024317:73130-73149	None:intergenic	45.0%
!!!	CCTCGTTTCTAGCAACCTTT+TGG	-	tig0024317:73143-73162	None:intergenic	45.0%
	CCAAAAGGTTGCTAGAAACG+AGG	+	tig0024317:73140-73159	Msa1416140:CDS	45.0%
	AAACGAGGGACAAACTTTCC+AGG	+	tig0024317:73155-73174	Msa1416140:CDS	45.0%
!	TAGGGAACGAAGTCGCTTTG+CGG	-	tig0024317:71861-71880	None:intergenic	50.0%
	GGAAATGAGAGTCACTGAGC+GGG	-	tig0024317:72540-72559	None:intergenic	50.0%
	GGGAAATGAGAGTCACTGAG+CGG	-	tig0024317:72541-72560	None:intergenic	50.0%
	CAGACGAGGGAAAGAACTGA+GGG	-	tig0024317:72606-72625	None:intergenic	50.0%
	TCAGACGAGGGAAAGAACTG+AGG	-	tig0024317:72607-72626	None:intergenic	50.0%
!!	GCCGATATTGGCTGTGGTTT+TGG	+	tig0024317:72658-72677	Msa1416140:CDS	50.0%
	AAGAGAAGAACCATCGCCGT+CGG	+	tig0024317:72917-72936	Msa1416140:CDS	50.0%
!!	AGAATGGGCTGATAACCCGA+CGG	-	tig0024317:72936-72955	None:intergenic	50.0%
	ATGTGGAAGAACTTGGGGAC+TGG	+	tig0024317:73013-73032	Msa1416140:CDS	50.0%
	TGCCACTGAAGAAGGCCAAA+AGG	+	tig0024317:73125-73144	Msa1416140:CDS	50.0%
	CAATGCGTCTGTATACAGCC+TGG	-	tig0024317:73176-73195	None:intergenic	50.0%
!	TAGGGAACGAAGTCGCTTTG+CGG	-	tig0024317:71861-71880	None:intergenic	50.0%
	GGAAATGAGAGTCACTGAGC+GGG	-	tig0024317:72540-72559	None:intergenic	50.0%
	GGGAAATGAGAGTCACTGAG+CGG	-	tig0024317:72541-72560	None:intergenic	50.0%
	CAGACGAGGGAAAGAACTGA+GGG	-	tig0024317:72606-72625	None:intergenic	50.0%
	TCAGACGAGGGAAAGAACTG+AGG	-	tig0024317:72607-72626	None:intergenic	50.0%
!!	GCCGATATTGGCTGTGGTTT+TGG	+	tig0024317:72658-72677	Msa1416140:CDS	50.0%
	AAGAGAAGAACCATCGCCGT+CGG	+	tig0024317:72917-72936	Msa1416140:CDS	50.0%
!!	AGAATGGGCTGATAACCCGA+CGG	-	tig0024317:72936-72955	None:intergenic	50.0%
	ATGTGGAAGAACTTGGGGAC+TGG	+	tig0024317:73013-73032	Msa1416140:CDS	50.0%
	TGCCACTGAAGAAGGCCAAA+AGG	+	tig0024317:73125-73144	Msa1416140:CDS	50.0%
	CAATGCGTCTGTATACAGCC+TGG	-	tig0024317:73176-73195	None:intergenic	50.0%
!	AGTCGCTTTGCGGAGCTTCA+GGG	-	tig0024317:71851-71870	None:intergenic	55.0%
!	AAGTCGCTTTGCGGAGCTTC+AGG	-	tig0024317:71852-71871	None:intergenic	55.0%
	ACAGACATGCCTGAGACTGG+TGG	+	tig0024317:72445-72464	Msa1416140:intron	55.0%
!!	GCTCGATAGAAGCGCTTTCG+AGG	-	tig0024317:72502-72521	None:intergenic	55.0%
!!	GACTGGGTGATAACGGCACA+GGG	-	tig0024317:72561-72580	None:intergenic	55.0%
!!	TGACTGGGTGATAACGGCAC+AGG	-	tig0024317:72562-72581	None:intergenic	55.0%
	AGAGAAGAACCATCGCCGTC+GGG	+	tig0024317:72918-72937	Msa1416140:CDS	55.0%
!	AGTCGCTTTGCGGAGCTTCA+GGG	-	tig0024317:71851-71870	None:intergenic	55.0%
!	AAGTCGCTTTGCGGAGCTTC+AGG	-	tig0024317:71852-71871	None:intergenic	55.0%
	ACAGACATGCCTGAGACTGG+TGG	+	tig0024317:72445-72464	Msa1416140:intron	55.0%
!!	GCTCGATAGAAGCGCTTTCG+AGG	-	tig0024317:72502-72521	None:intergenic	55.0%
!!	GACTGGGTGATAACGGCACA+GGG	-	tig0024317:72561-72580	None:intergenic	55.0%
!!	TGACTGGGTGATAACGGCAC+AGG	-	tig0024317:72562-72581	None:intergenic	55.0%
	AGAGAAGAACCATCGCCGTC+GGG	+	tig0024317:72918-72937	Msa1416140:CDS	55.0%
!	GTCGCTTTGCGGAGCTTCAG+GGG	-	tig0024317:71850-71869	None:intergenic	60.0%
!	GTCGCTTTGCGGAGCTTCAG+GGG	-	tig0024317:71850-71869	None:intergenic	60.0%
	CGGAGCTTCAGGGGTAGCAG+CGG	-	tig0024317:71841-71860	None:intergenic	65.0%
	GGCTGATAACCCGACGGCGA+TGG	-	tig0024317:72930-72949	None:intergenic	65.0%
	CGGAGCTTCAGGGGTAGCAG+CGG	-	tig0024317:71841-71860	None:intergenic	65.0%
	GGCTGATAACCCGACGGCGA+TGG	-	tig0024317:72930-72949	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
tig0024317	gene	71833	73470	71833	ID=Msa1416140;Name=Msa1416140
tig0024317	mRNA	71833	73470	71833	ID=Msa1416140-mRNA-1;Parent=Msa1416140;Name=Msa1416140-mRNA-1;_AED=0.01;_eAED=0.01;_QI=97\|0\|0.5\|1\|0\|0.5\|2\|252\|255
tig0024317	exon	71833	71929	71833	ID=Msa1416140-mRNA-1:exon:22758;Parent=Msa1416140-mRNA-1
tig0024317	exon	72451	73470	72451	ID=Msa1416140-mRNA-1:exon:22759;Parent=Msa1416140-mRNA-1
tig0024317	five_prime_UTR	71833	71929	71833	ID=Msa1416140-mRNA-1:five_prime_utr;Parent=Msa1416140-mRNA-1
tig0024317	CDS	72451	73218	72451	ID=Msa1416140-mRNA-1:cds;Parent=Msa1416140-mRNA-1
tig0024317	three_prime_UTR	73219	73470	73219	ID=Msa1416140-mRNA-1:three_prime_utr;Parent=Msa1416140-mRNA-1

Gene Sequence

>Msa1416140

ATGCCTGAGACTGGTGGAAATTCAACATTCAGTAAGTCAACAGGATTGCCTCGAAAGCGCTTCTATCGAGCACGAGCACACAGCAACCCGCTCAGTGACTCTCATTTCCCTGTGCCGTTATCACCCAGTCATGTTGACTATTCCCTCCATTACCCTCAGTTCTTTCCCTCGTCTGAGAAAGCTGATAGTTGCAAAAAGATTAAGTTTGCCGATATTGGCTGTGGTTTTGGAGGGTTGCTCATCAGTCTTTCCACTCTGTTCCCAGAAACATTGATGATCGGAATGGAACTTAGAGATAAAGTGTCCGAGTATGTTAAGGAACGAATTTTATCTTTAAGGGTAGCAAATCCAGGTCAATACCAAAATGTTTCTGTGGTGCGGACTAACTCCATGAAGTACATTCCCAATCACTTTGAGAAAGCACAACTCTCAAAGATGTTTTTCCTGTTTCCCGATCCTCATTTTAAAGAGAAGAACCATCGCCGTCGGGTTATCAGCCCATTCTTACTAGATGAGTATGCTTTTGTTCTTGAGATTGGTGGAATTATATACACAATAACAGATGTGGAAGAACTTGGGGACTGGATGAAATCTTGTTTGGAGAATCACCCGTTGTTTGAACCTTTGACTGAGAAAGAACTTGAAGCAGATCCGGCTGTTAAGCTTTTAAGCTCTGCCACTGAAGAAGGCCAAAAGGTTGCTAGAAACGAGGGACAAACTTTCCAGGCTGTATACAGACGCATTGCAGCATCTGATCAAATATCCTAG

Protein sequence

>Msa1416140

MPETGGNSTFSKSTGLPRKRFYRARAHSNPLSDSHFPVPLSPSHVDYSLHYPQFFPSSEKADSCKKIKFADIGCGFGGLLISLSTLFPETLMIGMELRDKVSEYVKERILSLRVANPGQYQNVSVVRTNSMKYIPNHFEKAQLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAFVLEIGGIIYTITDVEELGDWMKSCLENHPLFEPLTEKELEADPAVKLLSSATEEGQKVARNEGQTFQAVYRRIAASDQIS*