Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947590 | XP_013451628.1 | 97.880 | 283 | 6 | 0 | 1 | 283 | 1 | 283 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947590 | sp|Q9C7C1|TET6_ARATH | 63.732 | 284 | 100 | 2 | 1 | 283 | 1 | 282 | 2.58e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048000 | Msa0947590 | 0.825304 | 5.043026e-54 | -8.615850e-47 |
| Msa0050730 | Msa0947590 | 0.843754 | 1.153345e-58 | -8.615850e-47 |
| Msa0050760 | Msa0947590 | 0.857797 | 1.277436e-62 | -8.615850e-47 |
| Msa0069310 | Msa0947590 | 0.803362 | 3.615407e-49 | -8.615850e-47 |
| Msa0092990 | Msa0947590 | 0.814644 | 1.387300e-51 | -8.615850e-47 |
| Msa0120340 | Msa0947590 | 0.807543 | 4.800717e-50 | -8.615850e-47 |
| Msa0610590 | Msa0947590 | 0.841362 | 4.976646e-58 | -8.615850e-47 |
| Msa0622340 | Msa0947590 | 0.816953 | 4.239748e-52 | -8.615850e-47 |
| Msa0651190 | Msa0947590 | 0.837778 | 4.251391e-57 | -8.615850e-47 |
| Msa0662650 | Msa0947590 | 0.808960 | 2.395610e-50 | -8.615850e-47 |
| Msa0670660 | Msa0947590 | 0.815102 | 1.098047e-51 | -8.615850e-47 |
| Msa0694250 | Msa0947590 | 0.804141 | 2.491057e-49 | -8.615850e-47 |
| Msa0708860 | Msa0947590 | 0.810476 | 1.130889e-50 | -8.615850e-47 |
| Msa0731710 | Msa0947590 | 0.817238 | 3.657440e-52 | -8.615850e-47 |
| Msa0140860 | Msa0947590 | 0.808816 | 2.571695e-50 | -8.615850e-47 |
| Msa0217400 | Msa0947590 | 0.801466 | 8.883860e-49 | -8.615850e-47 |
| Msa0389810 | Msa0947590 | 0.806771 | 6.997970e-50 | -8.615850e-47 |
| Msa0394340 | Msa0947590 | 0.806984 | 6.308551e-50 | -8.615850e-47 |
| Msa0449760 | Msa0947590 | 0.807476 | 4.962409e-50 | -8.615850e-47 |
| Msa0449830 | Msa0947590 | 0.804933 | 1.702552e-49 | -8.615850e-47 |
| Msa0464900 | Msa0947590 | 0.827043 | 1.945634e-54 | -8.615850e-47 |
| Msa0473240 | Msa0947590 | 0.802713 | 4.923948e-49 | -8.615850e-47 |
| Msa0482190 | Msa0947590 | -0.826093 | 3.277022e-54 | -8.615850e-47 |
| Msa0250670 | Msa0947590 | 0.807398 | 5.155401e-50 | -8.615850e-47 |
| Msa0260810 | Msa0947590 | 0.825592 | 4.308939e-54 | -8.615850e-47 |
| Msa0269450 | Msa0947590 | 0.814042 | 1.884257e-51 | -8.615850e-47 |
| Msa0288320 | Msa0947590 | 0.802555 | 5.307522e-49 | -8.615850e-47 |
| Msa0356960 | Msa0947590 | 0.830148 | 3.456261e-55 | -8.615850e-47 |
| Msa0484780 | Msa0947590 | 0.809103 | 2.232717e-50 | -8.615850e-47 |
| Msa0485500 | Msa0947590 | -0.820883 | 5.419799e-53 | -8.615850e-47 |
| Msa0489610 | Msa0947590 | 0.817932 | 2.550956e-52 | -8.615850e-47 |
| Msa0556240 | Msa0947590 | 0.811982 | 5.331007e-51 | -8.615850e-47 |
| Msa0578970 | Msa0947590 | 0.836220 | 1.062953e-56 | -8.615850e-47 |
| Msa0882510 | Msa0947590 | 0.831548 | 1.568185e-55 | -8.615850e-47 |
| Msa0891600 | Msa0947590 | -0.809751 | 1.621094e-50 | -8.615850e-47 |
| Msa0899230 | Msa0947590 | 0.819621 | 1.055041e-52 | -8.615850e-47 |
| Msa0908170 | Msa0947590 | 0.849174 | 3.830372e-60 | -8.615850e-47 |
| Msa0910980 | Msa0947590 | -0.830130 | 3.491825e-55 | -8.615850e-47 |
| Msa0927670 | Msa0947590 | 0.833553 | 4.992206e-56 | -8.615850e-47 |
| Msa0947590 | Msa0960160 | 0.839197 | 1.829569e-57 | -8.615850e-47 |
| Msa0947590 | Msa0999040 | 0.825171 | 5.421358e-54 | -8.615850e-47 |
| Msa0947590 | Msa1039880 | 0.816466 | 5.451657e-52 | -8.615850e-47 |
| Msa0947590 | Msa1087470 | 0.800115 | 1.676851e-48 | -8.615850e-47 |
| Msa0947590 | Msa1097840 | 0.807172 | 5.754955e-50 | -8.615850e-47 |
| Msa0947590 | Msa1218650 | 0.814190 | 1.748251e-51 | -8.615850e-47 |
| Msa0947590 | Msa1233500 | 0.804945 | 1.693265e-49 | -8.615850e-47 |
| Msa0947590 | Msa1258380 | -0.823646 | 1.238068e-53 | -8.615850e-47 |
| Msa0947590 | Msa1279650 | 0.820990 | 5.122633e-53 | -8.615850e-47 |
| Msa0947590 | Msa1307740 | 0.809052 | 2.289422e-50 | -8.615850e-47 |
| Msa0947590 | Msa1359650 | -0.808491 | 3.017112e-50 | -8.615850e-47 |
| Msa0947590 | Msa1365040 | -0.800703 | 1.272469e-48 | -8.615850e-47 |
| Msa0947590 | Msa1404540 | 0.828796 | 7.366772e-55 | -8.615850e-47 |
| Msa0947590 | Msa1419110 | 0.822493 | 2.299567e-53 | -8.615850e-47 |
| Msa0947590 | Msa1431060 | 0.830412 | 2.980330e-55 | -8.615850e-47 |
| Msa0947590 | Msa1439230 | 0.816352 | 5.779728e-52 | -8.615850e-47 |
| Msa0947590 | Msa1440600 | 0.856336 | 3.446290e-62 | -8.615850e-47 |
| Msa0947590 | Msa1444250 | -0.828846 | 7.165299e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947590 | MtrunA17_Chr6g0462061 | 97.880 | 283 | 6 | 0 | 1 | 283 | 1 | 283 | 0.0 | 580 |
| Msa0947590 | MtrunA17_Chr1g0199961 | 74.912 | 283 | 71 | 0 | 1 | 283 | 1 | 283 | 7.53e-159 | 443 |
| Msa0947590 | MtrunA17_Chr4g0030021 | 44.803 | 279 | 138 | 3 | 3 | 265 | 2 | 280 | 1.01e-75 | 232 |
| Msa0947590 | MtrunA17_Chr4g0073251 | 43.846 | 260 | 133 | 3 | 3 | 249 | 2 | 261 | 1.76e-73 | 226 |
| Msa0947590 | MtrunA17_Chr8g0366571 | 42.412 | 257 | 138 | 3 | 4 | 250 | 3 | 259 | 9.29e-67 | 209 |
| Msa0947590 | MtrunA17_Chr8g0389221 | 40.909 | 264 | 144 | 5 | 5 | 256 | 4 | 267 | 1.23e-59 | 191 |
| Msa0947590 | MtrunA17_Chr8g0386471 | 35.659 | 258 | 156 | 2 | 5 | 252 | 6 | 263 | 8.81e-59 | 188 |
| Msa0947590 | MtrunA17_Chr4g0062101 | 36.047 | 258 | 152 | 3 | 3 | 247 | 5 | 262 | 2.95e-52 | 172 |
| Msa0947590 | MtrunA17_Chr5g0411131 | 40.234 | 256 | 143 | 3 | 5 | 250 | 4 | 259 | 5.00e-50 | 166 |
| Msa0947590 | MtrunA17_Chr5g0447681 | 26.587 | 252 | 156 | 4 | 3 | 243 | 48 | 281 | 3.92e-27 | 107 |
| Msa0947590 | MtrunA17_Chr2g0307651 | 32.192 | 146 | 99 | 0 | 1 | 146 | 1 | 146 | 7.00e-18 | 79.3 |
| Msa0947590 | MtrunA17_Chr2g0307641 | 48.485 | 66 | 34 | 0 | 185 | 250 | 17 | 82 | 7.49e-18 | 77.0 |
| Msa0947590 | MtrunA17_Chr5g0447671 | 32.773 | 119 | 67 | 2 | 113 | 227 | 42 | 151 | 2.96e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0947590 | AT3G12090.1 | 63.732 | 284 | 100 | 2 | 1 | 283 | 1 | 282 | 2.62e-127 | 363 |
| Msa0947590 | AT4G23410.1 | 55.160 | 281 | 124 | 2 | 1 | 280 | 1 | 280 | 2.39e-116 | 336 |
| Msa0947590 | AT3G45600.1 | 42.652 | 279 | 144 | 3 | 3 | 265 | 2 | 280 | 1.04e-80 | 245 |
| Msa0947590 | AT4G30430.1 | 40.000 | 270 | 150 | 3 | 1 | 258 | 1 | 270 | 6.07e-80 | 243 |
| Msa0947590 | AT2G23810.1 | 43.561 | 264 | 136 | 4 | 1 | 251 | 1 | 264 | 8.88e-80 | 243 |
| Msa0947590 | AT4G28050.1 | 43.462 | 260 | 135 | 3 | 1 | 248 | 1 | 260 | 1.82e-78 | 239 |
| Msa0947590 | AT5G46700.1 | 43.191 | 257 | 136 | 3 | 4 | 250 | 3 | 259 | 2.33e-63 | 201 |
| Msa0947590 | AT5G60220.1 | 42.599 | 277 | 143 | 4 | 3 | 263 | 2 | 278 | 2.69e-63 | 202 |
| Msa0947590 | AT2G19580.1 | 38.182 | 275 | 151 | 5 | 4 | 267 | 3 | 269 | 2.04e-57 | 185 |
| Msa0947590 | AT1G18520.1 | 36.900 | 271 | 150 | 5 | 1 | 251 | 1 | 270 | 2.72e-57 | 185 |
| Msa0947590 | AT1G63260.2 | 33.730 | 252 | 151 | 4 | 5 | 246 | 6 | 251 | 1.27e-53 | 175 |
| Msa0947590 | AT1G63260.6 | 33.750 | 240 | 149 | 3 | 5 | 234 | 6 | 245 | 4.38e-51 | 169 |
| Msa0947590 | AT1G63260.1 | 33.750 | 240 | 149 | 3 | 5 | 234 | 6 | 245 | 4.38e-51 | 169 |
| Msa0947590 | AT1G63260.3 | 33.750 | 240 | 149 | 3 | 5 | 234 | 6 | 245 | 5.50e-51 | 169 |
| Msa0947590 | AT3G45600.2 | 42.941 | 170 | 89 | 2 | 3 | 164 | 2 | 171 | 6.00e-44 | 148 |
| Msa0947590 | AT1G63260.5 | 32.864 | 213 | 133 | 3 | 5 | 207 | 6 | 218 | 6.99e-43 | 146 |
| Msa0947590 | AT1G63260.4 | 34.706 | 170 | 109 | 2 | 5 | 172 | 6 | 175 | 9.40e-35 | 125 |
| Msa0947590 | AT2G03840.1 | 26.400 | 250 | 168 | 4 | 5 | 239 | 17 | 265 | 6.16e-33 | 122 |
| Msa0947590 | AT5G23030.1 | 28.016 | 257 | 174 | 3 | 1 | 247 | 1 | 256 | 3.57e-28 | 109 |
| Msa0947590 | AT5G57810.1 | 25.794 | 252 | 148 | 7 | 10 | 233 | 60 | 300 | 2.33e-18 | 84.0 |
Find 65 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGTTCAAAACTTGCTTCT+TGG | 0.187159 | 6_3:-30526930 | Msa0947590:CDS |
| ATGGGCACTTTGGGTTTATT+TGG | 0.188489 | 6_3:-30527154 | Msa0947590:CDS |
| TTCTATTAAGAGTTGTATTA+TGG | 0.195532 | 6_3:-30526962 | Msa0947590:CDS |
| CATAGTCCTGCTCCTATTAT+TGG | 0.220215 | 6_3:+30527294 | None:intergenic |
| CAATCATAACATAGTAAATT+TGG | 0.225690 | 6_3:+30526002 | None:intergenic |
| AAGGGATTTGTCTCCCATTC+AGG | 0.276736 | 6_3:-30526887 | Msa0947590:intron |
| ATTATTGGTTTGACTATGTT+TGG | 0.278996 | 6_3:-30527105 | Msa0947590:CDS |
| TCATGTGGCATGGGCACTTT+GGG | 0.287239 | 6_3:-30527163 | Msa0947590:CDS |
| AATATCATGGTAAATATAAA+AGG | 0.303748 | 6_3:+30525123 | None:intergenic |
| TTACTTATAGGAACAATTAT+TGG | 0.308261 | 6_3:-30527120 | Msa0947590:CDS |
| CTTATATGGAGTATCATCTT+AGG | 0.332870 | 6_3:-30527035 | Msa0947590:CDS |
| CTTATAGGAATATATTCTAT+TGG | 0.336724 | 6_3:-30525894 | Msa0947590:CDS |
| CTATGATTAAAAGTGGTTCT+TGG | 0.340299 | 6_3:+30527235 | None:intergenic |
| GTGGTTATGTTGTTACTTAT+AGG | 0.341656 | 6_3:-30527132 | Msa0947590:CDS |
| CAATAATAGGAGCAGGACTA+TGG | 0.341731 | 6_3:-30527293 | Msa0947590:CDS |
| ATTTCACTAGTTGGTTTCAT+AGG | 0.346581 | 6_3:-30527195 | Msa0947590:CDS |
| AGTGCCTGGTAGAACTTATA+TGG | 0.348355 | 6_3:-30527049 | Msa0947590:CDS |
| TTAGCATCAATACCAATAAT+AGG | 0.355586 | 6_3:-30527306 | Msa0947590:CDS |
| ATTCACCTTGGTTGAGGAAA+AGG | 0.371654 | 6_3:-30527008 | Msa0947590:CDS |
| CGATTTAGCAACTCAGTGAT+AGG | 0.372131 | 6_3:-30527351 | Msa0947590:CDS |
| TCTATTAAGAGTTGTATTAT+GGG | 0.373214 | 6_3:-30526961 | Msa0947590:CDS |
| GTCCTTGTGATTTCACTAGT+TGG | 0.382228 | 6_3:-30527204 | Msa0947590:CDS |
| GGCACTTTGGGTTTATTTGG+TGG | 0.388517 | 6_3:-30527151 | Msa0947590:CDS |
| TGAGGAAAGTTAGACCTAGA+TGG | 0.399700 | 6_3:-30525809 | Msa0947590:CDS |
| GCTGGAGATGGTGGCATGAT+AGG | 0.411737 | 6_3:-30525234 | Msa0947590:CDS |
| ATGGTAAATATAAAAGGCCT+TGG | 0.418841 | 6_3:+30525129 | None:intergenic |
| GGATTAAGGATCATCAATAC+TGG | 0.425306 | 6_3:-30526987 | Msa0947590:CDS |
| GACCTAGATGGGATTACTAT+TGG | 0.429174 | 6_3:-30525797 | Msa0947590:intron |
| CTCTCTTGATTATATGCAAA+GGG | 0.433519 | 6_3:-30526905 | Msa0947590:CDS |
| TTGGTTGAGGAAAAGGATTA+AGG | 0.439843 | 6_3:-30527001 | Msa0947590:CDS |
| GATTGTGATTCTTGCAAAGC+TGG | 0.451997 | 6_3:-30525984 | Msa0947590:CDS |
| GAGCAGGACTATGGATTTCA+AGG | 0.454270 | 6_3:-30527284 | Msa0947590:CDS |
| GGATTTGTTGTCACTACTCA+AGG | 0.454395 | 6_3:-30527084 | Msa0947590:CDS |
| ATGTTGAAGTTGCATGTTGT+TGG | 0.463933 | 6_3:+30526077 | None:intergenic |
| GGAATTATTCACCTTGGTTG+AGG | 0.474318 | 6_3:-30527014 | Msa0947590:CDS |
| TTCATGTGGCATGGGCACTT+TGG | 0.478026 | 6_3:-30527164 | Msa0947590:CDS |
| TTGTTGTCACTACTCAAGGT+GGG | 0.495016 | 6_3:-30527080 | Msa0947590:CDS |
| CGCATGGTGAAAATCGTATG+AGG | 0.502416 | 6_3:-30525827 | Msa0947590:CDS |
| ATCTTAGGAATTATTCACCT+TGG | 0.503983 | 6_3:-30527020 | Msa0947590:CDS |
| TGTTGTCACTACTCAAGGTG+GGG | 0.505709 | 6_3:-30527079 | Msa0947590:CDS |
| CAAAGTTTATTATAAAGTGC+AGG | 0.507428 | 6_3:-30527426 | Msa0947590:five_prime_UTR |
| TTTGTACAAAAGCAATATCA+TGG | 0.509118 | 6_3:+30525110 | None:intergenic |
| AAGATATTGATTGCTACCGT+TGG | 0.515972 | 6_3:-30526034 | Msa0947590:CDS |
| TTGAAGTTGCATGTTGTTGG+TGG | 0.520841 | 6_3:+30526080 | None:intergenic |
| ATAAATCCTATGATTAAAAG+TGG | 0.525595 | 6_3:+30527228 | None:intergenic |
| GAGGAAAGTTAGACCTAGAT+GGG | 0.529473 | 6_3:-30525808 | Msa0947590:CDS |
| AATCTCATGATAGACATCAT+TGG | 0.540964 | 6_3:+30525184 | None:intergenic |
| TTGAAAACATAAGAACAGAT+TGG | 0.541716 | 6_3:-30525956 | Msa0947590:CDS |
| ATAGGACATTATAGAATCCA+AGG | 0.546551 | 6_3:-30525146 | Msa0947590:three_prime_UTR |
| CAACATGGAAACAACATTGG+TGG | 0.547388 | 6_3:-30526060 | Msa0947590:CDS |
| TCAATACCAATAATAGGAGC+AGG | 0.547829 | 6_3:-30527300 | Msa0947590:CDS |
| GTTGTCACTACTCAAGGTGG+GGG | 0.548565 | 6_3:-30527078 | Msa0947590:CDS |
| CCTCTCTTGATTATATGCAA+AGG | 0.555243 | 6_3:-30526906 | Msa0947590:CDS |
| TTTGTTGTCACTACTCAAGG+TGG | 0.561759 | 6_3:-30527081 | Msa0947590:CDS |
| AATTTGGTGCATTGTTCCAA+CGG | 0.574385 | 6_3:+30526018 | None:intergenic |
| TACCAATAGTAATCCCATCT+AGG | 0.575079 | 6_3:+30525795 | None:intergenic |
| TTAAATGCAGCTGGAGATGG+TGG | 0.575787 | 6_3:-30525243 | Msa0947590:intron |
| GAGATGGTGGCATGATAGGA+AGG | 0.579029 | 6_3:-30525230 | Msa0947590:CDS |
| CTTCAACATGGAAACAACAT+TGG | 0.595983 | 6_3:-30526063 | Msa0947590:CDS |
| AACAACATGCAACTTCAACA+TGG | 0.605115 | 6_3:-30526075 | Msa0947590:CDS |
| ATTGTGTGTGCTCTAAAGAT+AGG | 0.619982 | 6_3:-30525164 | Msa0947590:three_prime_UTR |
| TCTGAAACTGATTATGCGCA+TGG | 0.635607 | 6_3:-30525843 | Msa0947590:CDS |
| TACTCCATATAAGTTCTACC+AGG | 0.650454 | 6_3:+30527045 | None:intergenic |
| CCTTTGCATATAATCAAGAG+AGG | 0.677788 | 6_3:+30526906 | None:intergenic |
| AACCAACTAGTGAAATCACA+AGG | 0.677930 | 6_3:+30527202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATATTAGTTAAACT+AGG | + | chr6_3:30525835-30525854 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTTTCTT+GGG | - | chr6_3:30525843-30525862 | Msa0947590:CDS | 10.0% |
| !!! | TATAAAAGTATATTTTCAAA+AGG | + | chr6_3:30526008-30526027 | None:intergenic | 10.0% |
| !! | AAAAAAATATTAGTTAAACT+AGG | + | chr6_3:30525835-30525854 | None:intergenic | 10.0% |
| !!! | TAATATTTTTTTGTTTTCTT+GGG | - | chr6_3:30525843-30525862 | Msa0947590:CDS | 10.0% |
| !!! | TATAAAAGTATATTTTCAAA+AGG | + | chr6_3:30526008-30526027 | None:intergenic | 10.0% |
| !!! | CTAATATTTTTTTGTTTTCT+TGG | - | chr6_3:30525842-30525861 | Msa0947590:CDS | 15.0% |
| !!! | TATACTTTTATACAAAAACA+TGG | - | chr6_3:30526016-30526035 | Msa0947590:CDS | 15.0% |
| !!! | GAAAATATAGTTTTAAATTG+CGG | + | chr6_3:30526180-30526199 | None:intergenic | 15.0% |
| !!! | TAATGATTTTGAAGAAATTT+CGG | + | chr6_3:30526207-30526226 | None:intergenic | 15.0% |
| !! | AAATTTCTTCAAAATCATTA+AGG | - | chr6_3:30526207-30526226 | Msa0947590:intron | 15.0% |
| !!! | AAAGTGTTAATTAGTTAAAA+GGG | + | chr6_3:30526730-30526749 | None:intergenic | 15.0% |
| !!! | AAAAGTGTTAATTAGTTAAA+AGG | + | chr6_3:30526731-30526750 | None:intergenic | 15.0% |
| !! | ATAATTCTCGAAATTATATT+AGG | - | chr6_3:30527014-30527033 | Msa0947590:CDS | 15.0% |
| !! | AATATCATGGTAAATATAAA+AGG | + | chr6_3:30527348-30527367 | None:intergenic | 15.0% |
| !!! | TTTTGTACAAATTTTCATTT+TGG | - | chr6_3:30527370-30527389 | Msa0947590:exon | 15.0% |
| !!! | CTAATATTTTTTTGTTTTCT+TGG | - | chr6_3:30525842-30525861 | Msa0947590:CDS | 15.0% |
| !!! | TATACTTTTATACAAAAACA+TGG | - | chr6_3:30526016-30526035 | Msa0947590:CDS | 15.0% |
| !!! | GAAAATATAGTTTTAAATTG+CGG | + | chr6_3:30526180-30526199 | None:intergenic | 15.0% |
| !!! | TAATGATTTTGAAGAAATTT+CGG | + | chr6_3:30526207-30526226 | None:intergenic | 15.0% |
| !! | AAATTTCTTCAAAATCATTA+AGG | - | chr6_3:30526207-30526226 | Msa0947590:intron | 15.0% |
| !!! | AAAGTGTTAATTAGTTAAAA+GGG | + | chr6_3:30526730-30526749 | None:intergenic | 15.0% |
| !!! | AAAAGTGTTAATTAGTTAAA+AGG | + | chr6_3:30526731-30526750 | None:intergenic | 15.0% |
| !! | ATAATTCTCGAAATTATATT+AGG | - | chr6_3:30527014-30527033 | Msa0947590:CDS | 15.0% |
| !! | AATATCATGGTAAATATAAA+AGG | + | chr6_3:30527348-30527367 | None:intergenic | 15.0% |
| !!! | TTTTGTACAAATTTTCATTT+TGG | - | chr6_3:30527370-30527389 | Msa0947590:exon | 15.0% |
| !!! | TTTCTCTATCTATTTTTCTT+TGG | + | chr6_3:30525082-30525101 | None:intergenic | 20.0% |
| !! | ATAAATCCTATGATTAAAAG+TGG | + | chr6_3:30525243-30525262 | None:intergenic | 20.0% |
| !! | TTACTTATAGGAACAATTAT+TGG | - | chr6_3:30525348-30525367 | Msa0947590:intron | 20.0% |
| !! | TTCTATTAAGAGTTGTATTA+TGG | - | chr6_3:30525506-30525525 | Msa0947590:intron | 20.0% |
| !! | TCTATTAAGAGTTGTATTAT+GGG | - | chr6_3:30525507-30525526 | Msa0947590:intron | 20.0% |
| !!! | AAACTAGGAAATTTTTCTTT+AGG | + | chr6_3:30525820-30525839 | None:intergenic | 20.0% |
| !!! | TATACTTTTGAAGTATAAGT+GGG | + | chr6_3:30525959-30525978 | None:intergenic | 20.0% |
| !!! | TACGAGTATAATTTTAGTTA+TGG | - | chr6_3:30526087-30526106 | Msa0947590:CDS | 20.0% |
| !!! | AATGATTTTGAAGAAATTTC+GGG | + | chr6_3:30526206-30526225 | None:intergenic | 20.0% |
| !!! | AAATTGACTAGCTTATAATT+TGG | - | chr6_3:30526308-30526327 | Msa0947590:intron | 20.0% |
| !! | CAATCATAACATAGTAAATT+TGG | + | chr6_3:30526469-30526488 | None:intergenic | 20.0% |
| !!! | GTTATTCTTGTTTTTCTTAT+AGG | - | chr6_3:30526559-30526578 | Msa0947590:intron | 20.0% |
| !! | CTTATAGGAATATATTCTAT+TGG | - | chr6_3:30526574-30526593 | Msa0947590:intron | 20.0% |
| !! | AAGTGTTAATTAGTTAAAAG+GGG | + | chr6_3:30526729-30526748 | None:intergenic | 20.0% |
| !! | TAATTTCGAGAATTATAACT+TGG | + | chr6_3:30527010-30527029 | None:intergenic | 20.0% |
| !!! | TCAATCAATTTAGTTTGATT+TGG | + | chr6_3:30527068-30527087 | None:intergenic | 20.0% |
| !!! | TGCACTTTATAATAAACTTT+TGG | + | chr6_3:30525043-30525062 | None:intergenic | 20.0% |
| !!! | TTTCTCTATCTATTTTTCTT+TGG | + | chr6_3:30525082-30525101 | None:intergenic | 20.0% |
| !! | ATAAATCCTATGATTAAAAG+TGG | + | chr6_3:30525243-30525262 | None:intergenic | 20.0% |
| !! | TTACTTATAGGAACAATTAT+TGG | - | chr6_3:30525348-30525367 | Msa0947590:intron | 20.0% |
| !! | TTCTATTAAGAGTTGTATTA+TGG | - | chr6_3:30525506-30525525 | Msa0947590:intron | 20.0% |
| !! | TCTATTAAGAGTTGTATTAT+GGG | - | chr6_3:30525507-30525526 | Msa0947590:intron | 20.0% |
| !!! | AAACTAGGAAATTTTTCTTT+AGG | + | chr6_3:30525820-30525839 | None:intergenic | 20.0% |
| !!! | TATACTTTTGAAGTATAAGT+GGG | + | chr6_3:30525959-30525978 | None:intergenic | 20.0% |
| !!! | TACGAGTATAATTTTAGTTA+TGG | - | chr6_3:30526087-30526106 | Msa0947590:CDS | 20.0% |
| !!! | AATGATTTTGAAGAAATTTC+GGG | + | chr6_3:30526206-30526225 | None:intergenic | 20.0% |
| !!! | AAATTGACTAGCTTATAATT+TGG | - | chr6_3:30526308-30526327 | Msa0947590:intron | 20.0% |
| !! | CAATCATAACATAGTAAATT+TGG | + | chr6_3:30526469-30526488 | None:intergenic | 20.0% |
| !!! | GTTATTCTTGTTTTTCTTAT+AGG | - | chr6_3:30526559-30526578 | Msa0947590:intron | 20.0% |
| !! | CTTATAGGAATATATTCTAT+TGG | - | chr6_3:30526574-30526593 | Msa0947590:intron | 20.0% |
| !! | AAGTGTTAATTAGTTAAAAG+GGG | + | chr6_3:30526729-30526748 | None:intergenic | 20.0% |
| !! | TAATTTCGAGAATTATAACT+TGG | + | chr6_3:30527010-30527029 | None:intergenic | 20.0% |
| !!! | TCAATCAATTTAGTTTGATT+TGG | + | chr6_3:30527068-30527087 | None:intergenic | 20.0% |
| ! | TTAGCATCAATACCAATAAT+AGG | - | chr6_3:30525162-30525181 | Msa0947590:three_prime_UTR | 25.0% |
| !!! | ATTATTGGTTTGACTATGTT+TGG | - | chr6_3:30525363-30525382 | Msa0947590:intron | 25.0% |
| !!! | TCGTTCAACATTTTTAAGAT+CGG | + | chr6_3:30525725-30525744 | None:intergenic | 25.0% |
| !!! | ATACTTTTGAAGTATAAGTG+GGG | + | chr6_3:30525958-30525977 | None:intergenic | 25.0% |
| !!! | GTATACTTTTGAAGTATAAG+TGG | + | chr6_3:30525960-30525979 | None:intergenic | 25.0% |
| !! | TTTTGCTAACATTTATGTTG+AGG | - | chr6_3:30526040-30526059 | Msa0947590:CDS | 25.0% |
| !!! | ATGATTTTGAAGAAATTTCG+GGG | + | chr6_3:30526205-30526224 | None:intergenic | 25.0% |
| ! | TTGAAAACATAAGAACAGAT+TGG | - | chr6_3:30526512-30526531 | Msa0947590:intron | 25.0% |
| ! | ACATTGCATAATATATGTAG+AGG | - | chr6_3:30526800-30526819 | Msa0947590:intron | 25.0% |
| !! | GTAAACAACGAATTTTGTAA+CGG | - | chr6_3:30526914-30526933 | Msa0947590:CDS | 25.0% |
| !!! | ATTAGGAGTATTCACAAATA+CGG | - | chr6_3:30527031-30527050 | Msa0947590:CDS | 25.0% |
| ! | TTTGTACAAAAGCAATATCA+TGG | + | chr6_3:30527361-30527380 | None:intergenic | 25.0% |
| ! | TTAGCATCAATACCAATAAT+AGG | - | chr6_3:30525162-30525181 | Msa0947590:three_prime_UTR | 25.0% |
| !!! | ATTATTGGTTTGACTATGTT+TGG | - | chr6_3:30525363-30525382 | Msa0947590:intron | 25.0% |
| !!! | TCGTTCAACATTTTTAAGAT+CGG | + | chr6_3:30525725-30525744 | None:intergenic | 25.0% |
| !!! | ATACTTTTGAAGTATAAGTG+GGG | + | chr6_3:30525958-30525977 | None:intergenic | 25.0% |
| !!! | GTATACTTTTGAAGTATAAG+TGG | + | chr6_3:30525960-30525979 | None:intergenic | 25.0% |
| !! | TTTTGCTAACATTTATGTTG+AGG | - | chr6_3:30526040-30526059 | Msa0947590:CDS | 25.0% |
| !!! | ATGATTTTGAAGAAATTTCG+GGG | + | chr6_3:30526205-30526224 | None:intergenic | 25.0% |
| ! | TTGAAAACATAAGAACAGAT+TGG | - | chr6_3:30526512-30526531 | Msa0947590:intron | 25.0% |
| ! | ACATTGCATAATATATGTAG+AGG | - | chr6_3:30526800-30526819 | Msa0947590:intron | 25.0% |
| !! | GTAAACAACGAATTTTGTAA+CGG | - | chr6_3:30526914-30526933 | Msa0947590:CDS | 25.0% |
| !!! | ATTAGGAGTATTCACAAATA+CGG | - | chr6_3:30527031-30527050 | Msa0947590:CDS | 25.0% |
| ! | TTTGTACAAAAGCAATATCA+TGG | + | chr6_3:30527361-30527380 | None:intergenic | 25.0% |
| CTATGATTAAAAGTGGTTCT+TGG | + | chr6_3:30525236-30525255 | None:intergenic | 30.0% | |
| !! | CAAGAACCACTTTTAATCAT+AGG | - | chr6_3:30525234-30525253 | Msa0947590:CDS | 30.0% |
| ! | ATTTCACTAGTTGGTTTCAT+AGG | - | chr6_3:30525273-30525292 | Msa0947590:intron | 30.0% |
| ! | GTGGTTATGTTGTTACTTAT+AGG | - | chr6_3:30525336-30525355 | Msa0947590:intron | 30.0% |
| ! | CTTATATGGAGTATCATCTT+AGG | - | chr6_3:30525433-30525452 | Msa0947590:intron | 30.0% |
| ATCTTAGGAATTATTCACCT+TGG | - | chr6_3:30525448-30525467 | Msa0947590:intron | 30.0% | |
| CTCTCTTGATTATATGCAAA+GGG | - | chr6_3:30525563-30525582 | Msa0947590:intron | 30.0% | |
| AAATCAGTATAACTACCGAA+CGG | + | chr6_3:30525688-30525707 | None:intergenic | 30.0% | |
| TTCTACTTGTTTGTTCAAAG+AGG | - | chr6_3:30525916-30525935 | Msa0947590:CDS | 30.0% | |
| !! | AGAAGCATTAGTACTATGAT+TGG | + | chr6_3:30526279-30526298 | None:intergenic | 30.0% |
| ATTGTTGAATAAATGCAGTC+TGG | - | chr6_3:30526355-30526374 | Msa0947590:intron | 30.0% | |
| TGCATAATATATGTAGAGGT+CGG | - | chr6_3:30526804-30526823 | Msa0947590:intron | 30.0% | |
| ! | ATTTTTGTCGAATAGTCTAG+TGG | + | chr6_3:30526883-30526902 | None:intergenic | 30.0% |
| !! | CAATTTAGTTTGATTTGGAG+TGG | + | chr6_3:30527063-30527082 | None:intergenic | 30.0% |
| ATTGAGTTCGATAACAAGTT+AGG | - | chr6_3:30527083-30527102 | Msa0947590:CDS | 30.0% | |
| TTGAGTTCGATAACAAGTTA+GGG | - | chr6_3:30527084-30527103 | Msa0947590:CDS | 30.0% | |
| !! | ACACCAAAAGTATTAGTTAG+CGG | + | chr6_3:30527201-30527220 | None:intergenic | 30.0% |
| AATCTCATGATAGACATCAT+TGG | + | chr6_3:30527287-30527306 | None:intergenic | 30.0% | |
| ATAGGACATTATAGAATCCA+AGG | - | chr6_3:30527322-30527341 | Msa0947590:CDS | 30.0% | |
| ATGGTAAATATAAAAGGCCT+TGG | + | chr6_3:30527342-30527361 | None:intergenic | 30.0% | |
| CTATGATTAAAAGTGGTTCT+TGG | + | chr6_3:30525236-30525255 | None:intergenic | 30.0% | |
| !! | CAAGAACCACTTTTAATCAT+AGG | - | chr6_3:30525234-30525253 | Msa0947590:CDS | 30.0% |
| ! | ATTTCACTAGTTGGTTTCAT+AGG | - | chr6_3:30525273-30525292 | Msa0947590:intron | 30.0% |
| ! | GTGGTTATGTTGTTACTTAT+AGG | - | chr6_3:30525336-30525355 | Msa0947590:intron | 30.0% |
| ! | CTTATATGGAGTATCATCTT+AGG | - | chr6_3:30525433-30525452 | Msa0947590:intron | 30.0% |
| ATCTTAGGAATTATTCACCT+TGG | - | chr6_3:30525448-30525467 | Msa0947590:intron | 30.0% | |
| CTCTCTTGATTATATGCAAA+GGG | - | chr6_3:30525563-30525582 | Msa0947590:intron | 30.0% | |
| AAATCAGTATAACTACCGAA+CGG | + | chr6_3:30525688-30525707 | None:intergenic | 30.0% | |
| TTCTACTTGTTTGTTCAAAG+AGG | - | chr6_3:30525916-30525935 | Msa0947590:CDS | 30.0% | |
| !! | AGAAGCATTAGTACTATGAT+TGG | + | chr6_3:30526279-30526298 | None:intergenic | 30.0% |
| ATTGTTGAATAAATGCAGTC+TGG | - | chr6_3:30526355-30526374 | Msa0947590:intron | 30.0% | |
| TGCATAATATATGTAGAGGT+CGG | - | chr6_3:30526804-30526823 | Msa0947590:intron | 30.0% | |
| ! | ATTTTTGTCGAATAGTCTAG+TGG | + | chr6_3:30526883-30526902 | None:intergenic | 30.0% |
| !! | CAATTTAGTTTGATTTGGAG+TGG | + | chr6_3:30527063-30527082 | None:intergenic | 30.0% |
| ATTGAGTTCGATAACAAGTT+AGG | - | chr6_3:30527083-30527102 | Msa0947590:CDS | 30.0% | |
| TTGAGTTCGATAACAAGTTA+GGG | - | chr6_3:30527084-30527103 | Msa0947590:CDS | 30.0% | |
| !! | ACACCAAAAGTATTAGTTAG+CGG | + | chr6_3:30527201-30527220 | None:intergenic | 30.0% |
| AATCTCATGATAGACATCAT+TGG | + | chr6_3:30527287-30527306 | None:intergenic | 30.0% | |
| ATAGGACATTATAGAATCCA+AGG | - | chr6_3:30527322-30527341 | Msa0947590:CDS | 30.0% | |
| ATGGTAAATATAAAAGGCCT+TGG | + | chr6_3:30527342-30527361 | None:intergenic | 30.0% | |
| TCAATACCAATAATAGGAGC+AGG | - | chr6_3:30525168-30525187 | Msa0947590:three_prime_UTR | 35.0% | |
| AACCAACTAGTGAAATCACA+AGG | + | chr6_3:30525269-30525288 | None:intergenic | 35.0% | |
| TACTCCATATAAGTTCTACC+AGG | + | chr6_3:30525426-30525445 | None:intergenic | 35.0% | |
| ! | TTAATCCTTTTCCTCAACCA+AGG | + | chr6_3:30525468-30525487 | None:intergenic | 35.0% |
| TTGGTTGAGGAAAAGGATTA+AGG | - | chr6_3:30525467-30525486 | Msa0947590:intron | 35.0% | |
| GGATTAAGGATCATCAATAC+TGG | - | chr6_3:30525481-30525500 | Msa0947590:intron | 35.0% | |
| ! | CTTGTTCAAAACTTGCTTCT+TGG | - | chr6_3:30525538-30525557 | Msa0947590:intron | 35.0% |
| CCTTTGCATATAATCAAGAG+AGG | + | chr6_3:30525565-30525584 | None:intergenic | 35.0% | |
| CCTCTCTTGATTATATGCAA+AGG | - | chr6_3:30525562-30525581 | Msa0947590:intron | 35.0% | |
| ! | AGCAATTTTCGTACCTGAAT+GGG | + | chr6_3:30525597-30525616 | None:intergenic | 35.0% |
| AGGTACGAAAATTGCTCTTT+AGG | - | chr6_3:30525601-30525620 | Msa0947590:intron | 35.0% | |
| !!! | TGGGGGTATTTTGATCTTTA+CGG | + | chr6_3:30525651-30525670 | None:intergenic | 35.0% |
| TTCTCATAAGCTTCCCTAAT+CGG | + | chr6_3:30525787-30525806 | None:intergenic | 35.0% | |
| TAGGGAAGCTTATGAGAAAT+TGG | - | chr6_3:30525789-30525808 | Msa0947590:intron | 35.0% | |
| !! | TGTTTTCTTGGGTTTGTTTG+TGG | - | chr6_3:30525854-30525873 | Msa0947590:CDS | 35.0% |
| ATGTTGAAGTTGCATGTTGT+TGG | + | chr6_3:30526394-30526413 | None:intergenic | 35.0% | |
| AACAACATGCAACTTCAACA+TGG | - | chr6_3:30526393-30526412 | Msa0947590:intron | 35.0% | |
| CTTCAACATGGAAACAACAT+TGG | - | chr6_3:30526405-30526424 | Msa0947590:intron | 35.0% | |
| ! | AAGATATTGATTGCTACCGT+TGG | - | chr6_3:30526434-30526453 | Msa0947590:intron | 35.0% |
| !! | AATTTGGTGCATTGTTCCAA+CGG | + | chr6_3:30526453-30526472 | None:intergenic | 35.0% |
| TACCAATAGTAATCCCATCT+AGG | + | chr6_3:30526676-30526695 | None:intergenic | 35.0% | |
| GCATAATATATGTAGAGGTC+GGG | - | chr6_3:30526805-30526824 | Msa0947590:intron | 35.0% | |
| CATAATATATGTAGAGGTCG+GGG | - | chr6_3:30526806-30526825 | Msa0947590:intron | 35.0% | |
| ACCTCACTTATTCACCTTAA+GGG | - | chr6_3:30526845-30526864 | Msa0947590:intron | 35.0% | |
| GGTTAAAAATTCACCCCTTA+AGG | + | chr6_3:30526862-30526881 | None:intergenic | 35.0% | |
| TTTGTAACGGTAGTTCAAAG+CGG | - | chr6_3:30526927-30526946 | Msa0947590:CDS | 35.0% | |
| ! | TTTAAAACCCTGCATGTGAT+AGG | - | chr6_3:30527149-30527168 | Msa0947590:CDS | 35.0% |
| ! | TGACCGCTAACTAATACTTT+TGG | - | chr6_3:30527195-30527214 | Msa0947590:CDS | 35.0% |
| !! | ATTGTGTGTGCTCTAAAGAT+AGG | - | chr6_3:30527304-30527323 | Msa0947590:CDS | 35.0% |
| TCAATACCAATAATAGGAGC+AGG | - | chr6_3:30525168-30525187 | Msa0947590:three_prime_UTR | 35.0% | |
| AACCAACTAGTGAAATCACA+AGG | + | chr6_3:30525269-30525288 | None:intergenic | 35.0% | |
| TACTCCATATAAGTTCTACC+AGG | + | chr6_3:30525426-30525445 | None:intergenic | 35.0% | |
| ! | TTAATCCTTTTCCTCAACCA+AGG | + | chr6_3:30525468-30525487 | None:intergenic | 35.0% |
| TTGGTTGAGGAAAAGGATTA+AGG | - | chr6_3:30525467-30525486 | Msa0947590:intron | 35.0% | |
| GGATTAAGGATCATCAATAC+TGG | - | chr6_3:30525481-30525500 | Msa0947590:intron | 35.0% | |
| ! | CTTGTTCAAAACTTGCTTCT+TGG | - | chr6_3:30525538-30525557 | Msa0947590:intron | 35.0% |
| CCTTTGCATATAATCAAGAG+AGG | + | chr6_3:30525565-30525584 | None:intergenic | 35.0% | |
| CCTCTCTTGATTATATGCAA+AGG | - | chr6_3:30525562-30525581 | Msa0947590:intron | 35.0% | |
| ! | AGCAATTTTCGTACCTGAAT+GGG | + | chr6_3:30525597-30525616 | None:intergenic | 35.0% |
| AGGTACGAAAATTGCTCTTT+AGG | - | chr6_3:30525601-30525620 | Msa0947590:intron | 35.0% | |
| !!! | TGGGGGTATTTTGATCTTTA+CGG | + | chr6_3:30525651-30525670 | None:intergenic | 35.0% |
| TTCTCATAAGCTTCCCTAAT+CGG | + | chr6_3:30525787-30525806 | None:intergenic | 35.0% | |
| TAGGGAAGCTTATGAGAAAT+TGG | - | chr6_3:30525789-30525808 | Msa0947590:intron | 35.0% | |
| !! | TGTTTTCTTGGGTTTGTTTG+TGG | - | chr6_3:30525854-30525873 | Msa0947590:CDS | 35.0% |
| ATGTTGAAGTTGCATGTTGT+TGG | + | chr6_3:30526394-30526413 | None:intergenic | 35.0% | |
| AACAACATGCAACTTCAACA+TGG | - | chr6_3:30526393-30526412 | Msa0947590:intron | 35.0% | |
| CTTCAACATGGAAACAACAT+TGG | - | chr6_3:30526405-30526424 | Msa0947590:intron | 35.0% | |
| ! | AAGATATTGATTGCTACCGT+TGG | - | chr6_3:30526434-30526453 | Msa0947590:intron | 35.0% |
| !! | AATTTGGTGCATTGTTCCAA+CGG | + | chr6_3:30526453-30526472 | None:intergenic | 35.0% |
| TACCAATAGTAATCCCATCT+AGG | + | chr6_3:30526676-30526695 | None:intergenic | 35.0% | |
| GCATAATATATGTAGAGGTC+GGG | - | chr6_3:30526805-30526824 | Msa0947590:intron | 35.0% | |
| CATAATATATGTAGAGGTCG+GGG | - | chr6_3:30526806-30526825 | Msa0947590:intron | 35.0% | |
| ACCTCACTTATTCACCTTAA+GGG | - | chr6_3:30526845-30526864 | Msa0947590:intron | 35.0% | |
| GGTTAAAAATTCACCCCTTA+AGG | + | chr6_3:30526862-30526881 | None:intergenic | 35.0% | |
| TTTGTAACGGTAGTTCAAAG+CGG | - | chr6_3:30526927-30526946 | Msa0947590:CDS | 35.0% | |
| ! | TTTAAAACCCTGCATGTGAT+AGG | - | chr6_3:30527149-30527168 | Msa0947590:CDS | 35.0% |
| ! | TGACCGCTAACTAATACTTT+TGG | - | chr6_3:30527195-30527214 | Msa0947590:CDS | 35.0% |
| !! | ATTGTGTGTGCTCTAAAGAT+AGG | - | chr6_3:30527304-30527323 | Msa0947590:CDS | 35.0% |
| CGATTTAGCAACTCAGTGAT+AGG | - | chr6_3:30525117-30525136 | Msa0947590:three_prime_UTR | 40.0% | |
| CATAGTCCTGCTCCTATTAT+TGG | + | chr6_3:30525177-30525196 | None:intergenic | 40.0% | |
| CAATAATAGGAGCAGGACTA+TGG | - | chr6_3:30525175-30525194 | Msa0947590:three_prime_UTR | 40.0% | |
| GTCCTTGTGATTTCACTAGT+TGG | - | chr6_3:30525264-30525283 | Msa0947590:intron | 40.0% | |
| !! | CATAGGAGCATGTTTTCATG+TGG | - | chr6_3:30525290-30525309 | Msa0947590:intron | 40.0% |
| ! | AGCATGTTTTCATGTGGCAT+GGG | - | chr6_3:30525296-30525315 | Msa0947590:intron | 40.0% |
| ! | ATGGGCACTTTGGGTTTATT+TGG | - | chr6_3:30525314-30525333 | Msa0947590:intron | 40.0% |
| !! | GGATTTGTTGTCACTACTCA+AGG | - | chr6_3:30525384-30525403 | Msa0947590:intron | 40.0% |
| ! | TTTGTTGTCACTACTCAAGG+TGG | - | chr6_3:30525387-30525406 | Msa0947590:intron | 40.0% |
| TTGTTGTCACTACTCAAGGT+GGG | - | chr6_3:30525388-30525407 | Msa0947590:intron | 40.0% | |
| AGTGCCTGGTAGAACTTATA+TGG | - | chr6_3:30525419-30525438 | Msa0947590:intron | 40.0% | |
| GGAATTATTCACCTTGGTTG+AGG | - | chr6_3:30525454-30525473 | Msa0947590:intron | 40.0% | |
| ATTCACCTTGGTTGAGGAAA+AGG | - | chr6_3:30525460-30525479 | Msa0947590:intron | 40.0% | |
| ! | GAGCAATTTTCGTACCTGAA+TGG | + | chr6_3:30525598-30525617 | None:intergenic | 40.0% |
| !!! | GGGGGTATTTTGATCTTTAC+GGG | + | chr6_3:30525650-30525669 | None:intergenic | 40.0% |
| ! | ACGATACTTAACTGCCGATT+AGG | - | chr6_3:30525770-30525789 | Msa0947590:intron | 40.0% |
| ! | CGATACTTAACTGCCGATTA+GGG | - | chr6_3:30525771-30525790 | Msa0947590:intron | 40.0% |
| !!! | CTTTTGAAGTATAAGTGGGG+TGG | + | chr6_3:30525955-30525974 | None:intergenic | 40.0% |
| TTGAAGTTGCATGTTGTTGG+TGG | + | chr6_3:30526391-30526410 | None:intergenic | 40.0% | |
| CAACATGGAAACAACATTGG+TGG | - | chr6_3:30526408-30526427 | Msa0947590:intron | 40.0% | |
| GATTGTGATTCTTGCAAAGC+TGG | - | chr6_3:30526484-30526503 | Msa0947590:intron | 40.0% | |
| ! | TCTGAAACTGATTATGCGCA+TGG | - | chr6_3:30526625-30526644 | Msa0947590:intron | 40.0% |
| TGAGGAAAGTTAGACCTAGA+TGG | - | chr6_3:30526659-30526678 | Msa0947590:intron | 40.0% | |
| GAGGAAAGTTAGACCTAGAT+GGG | - | chr6_3:30526660-30526679 | Msa0947590:intron | 40.0% | |
| GACCTAGATGGGATTACTAT+TGG | - | chr6_3:30526671-30526690 | Msa0947590:intron | 40.0% | |
| CACCTCACTTATTCACCTTA+AGG | - | chr6_3:30526844-30526863 | Msa0947590:intron | 40.0% | |
| CCTCACTTATTCACCTTAAG+GGG | - | chr6_3:30526846-30526865 | Msa0947590:intron | 40.0% | |
| TTGTAACGGTAGTTCAAAGC+GGG | - | chr6_3:30526928-30526947 | Msa0947590:CDS | 40.0% | |
| TCATATGCCTATCACATGCA+GGG | + | chr6_3:30527159-30527178 | None:intergenic | 40.0% | |
| ATCATATGCCTATCACATGC+AGG | + | chr6_3:30527160-30527179 | None:intergenic | 40.0% | |
| AGTTAGCGGTCAAAAGATCT+GGG | + | chr6_3:30527187-30527206 | None:intergenic | 40.0% | |
| TAGTTAGCGGTCAAAAGATC+TGG | + | chr6_3:30527188-30527207 | None:intergenic | 40.0% | |
| ! | CTTTTAAATGCAGCTGGAGA+TGG | - | chr6_3:30527222-30527241 | Msa0947590:CDS | 40.0% |
| CGATTTAGCAACTCAGTGAT+AGG | - | chr6_3:30525117-30525136 | Msa0947590:three_prime_UTR | 40.0% | |
| CATAGTCCTGCTCCTATTAT+TGG | + | chr6_3:30525177-30525196 | None:intergenic | 40.0% | |
| CAATAATAGGAGCAGGACTA+TGG | - | chr6_3:30525175-30525194 | Msa0947590:three_prime_UTR | 40.0% | |
| GTCCTTGTGATTTCACTAGT+TGG | - | chr6_3:30525264-30525283 | Msa0947590:intron | 40.0% | |
| !! | CATAGGAGCATGTTTTCATG+TGG | - | chr6_3:30525290-30525309 | Msa0947590:intron | 40.0% |
| ! | AGCATGTTTTCATGTGGCAT+GGG | - | chr6_3:30525296-30525315 | Msa0947590:intron | 40.0% |
| ! | ATGGGCACTTTGGGTTTATT+TGG | - | chr6_3:30525314-30525333 | Msa0947590:intron | 40.0% |
| !! | GGATTTGTTGTCACTACTCA+AGG | - | chr6_3:30525384-30525403 | Msa0947590:intron | 40.0% |
| ! | TTTGTTGTCACTACTCAAGG+TGG | - | chr6_3:30525387-30525406 | Msa0947590:intron | 40.0% |
| TTGTTGTCACTACTCAAGGT+GGG | - | chr6_3:30525388-30525407 | Msa0947590:intron | 40.0% | |
| AGTGCCTGGTAGAACTTATA+TGG | - | chr6_3:30525419-30525438 | Msa0947590:intron | 40.0% | |
| GGAATTATTCACCTTGGTTG+AGG | - | chr6_3:30525454-30525473 | Msa0947590:intron | 40.0% | |
| ATTCACCTTGGTTGAGGAAA+AGG | - | chr6_3:30525460-30525479 | Msa0947590:intron | 40.0% | |
| ! | GAGCAATTTTCGTACCTGAA+TGG | + | chr6_3:30525598-30525617 | None:intergenic | 40.0% |
| !!! | GGGGGTATTTTGATCTTTAC+GGG | + | chr6_3:30525650-30525669 | None:intergenic | 40.0% |
| ! | ACGATACTTAACTGCCGATT+AGG | - | chr6_3:30525770-30525789 | Msa0947590:intron | 40.0% |
| ! | CGATACTTAACTGCCGATTA+GGG | - | chr6_3:30525771-30525790 | Msa0947590:intron | 40.0% |
| !!! | CTTTTGAAGTATAAGTGGGG+TGG | + | chr6_3:30525955-30525974 | None:intergenic | 40.0% |
| TTGAAGTTGCATGTTGTTGG+TGG | + | chr6_3:30526391-30526410 | None:intergenic | 40.0% | |
| CAACATGGAAACAACATTGG+TGG | - | chr6_3:30526408-30526427 | Msa0947590:intron | 40.0% | |
| GATTGTGATTCTTGCAAAGC+TGG | - | chr6_3:30526484-30526503 | Msa0947590:intron | 40.0% | |
| ! | TCTGAAACTGATTATGCGCA+TGG | - | chr6_3:30526625-30526644 | Msa0947590:intron | 40.0% |
| TGAGGAAAGTTAGACCTAGA+TGG | - | chr6_3:30526659-30526678 | Msa0947590:intron | 40.0% | |
| GAGGAAAGTTAGACCTAGAT+GGG | - | chr6_3:30526660-30526679 | Msa0947590:intron | 40.0% | |
| GACCTAGATGGGATTACTAT+TGG | - | chr6_3:30526671-30526690 | Msa0947590:intron | 40.0% | |
| CACCTCACTTATTCACCTTA+AGG | - | chr6_3:30526844-30526863 | Msa0947590:intron | 40.0% | |
| CCTCACTTATTCACCTTAAG+GGG | - | chr6_3:30526846-30526865 | Msa0947590:intron | 40.0% | |
| TTGTAACGGTAGTTCAAAGC+GGG | - | chr6_3:30526928-30526947 | Msa0947590:CDS | 40.0% | |
| TCATATGCCTATCACATGCA+GGG | + | chr6_3:30527159-30527178 | None:intergenic | 40.0% | |
| ATCATATGCCTATCACATGC+AGG | + | chr6_3:30527160-30527179 | None:intergenic | 40.0% | |
| AGTTAGCGGTCAAAAGATCT+GGG | + | chr6_3:30527187-30527206 | None:intergenic | 40.0% | |
| TAGTTAGCGGTCAAAAGATC+TGG | + | chr6_3:30527188-30527207 | None:intergenic | 40.0% | |
| ! | CTTTTAAATGCAGCTGGAGA+TGG | - | chr6_3:30527222-30527241 | Msa0947590:CDS | 40.0% |
| GAGCAGGACTATGGATTTCA+AGG | - | chr6_3:30525184-30525203 | Msa0947590:three_prime_UTR | 45.0% | |
| ! | GAGCATGTTTTCATGTGGCA+TGG | - | chr6_3:30525295-30525314 | Msa0947590:intron | 45.0% |
| ! | GGCACTTTGGGTTTATTTGG+TGG | - | chr6_3:30525317-30525336 | Msa0947590:intron | 45.0% |
| TGTTGTCACTACTCAAGGTG+GGG | - | chr6_3:30525389-30525408 | Msa0947590:intron | 45.0% | |
| AAGGGATTTGTCTCCCATTC+AGG | - | chr6_3:30525581-30525600 | Msa0947590:intron | 45.0% | |
| GGGAGTGACTGGAAGAAAAA+TGG | + | chr6_3:30525630-30525649 | None:intergenic | 45.0% | |
| TTGATCTTTACGGGAGTGAC+TGG | + | chr6_3:30525641-30525660 | None:intergenic | 45.0% | |
| CGCATGGTGAAAATCGTATG+AGG | - | chr6_3:30526641-30526660 | Msa0947590:intron | 45.0% | |
| GCAATGTCTCTACGAACTGA+GGG | + | chr6_3:30526787-30526806 | None:intergenic | 45.0% | |
| TGCAATGTCTCTACGAACTG+AGG | + | chr6_3:30526788-30526807 | None:intergenic | 45.0% | |
| CCCCTTAAGGTGAATAAGTG+AGG | + | chr6_3:30526849-30526868 | None:intergenic | 45.0% | |
| ! | GGTGTGCTTTTAAATGCAGC+TGG | - | chr6_3:30527216-30527235 | Msa0947590:CDS | 45.0% |
| TTAAATGCAGCTGGAGATGG+TGG | - | chr6_3:30527225-30527244 | Msa0947590:CDS | 45.0% | |
| GAGCAGGACTATGGATTTCA+AGG | - | chr6_3:30525184-30525203 | Msa0947590:three_prime_UTR | 45.0% | |
| ! | GAGCATGTTTTCATGTGGCA+TGG | - | chr6_3:30525295-30525314 | Msa0947590:intron | 45.0% |
| ! | GGCACTTTGGGTTTATTTGG+TGG | - | chr6_3:30525317-30525336 | Msa0947590:intron | 45.0% |
| TGTTGTCACTACTCAAGGTG+GGG | - | chr6_3:30525389-30525408 | Msa0947590:intron | 45.0% | |
| AAGGGATTTGTCTCCCATTC+AGG | - | chr6_3:30525581-30525600 | Msa0947590:intron | 45.0% | |
| GGGAGTGACTGGAAGAAAAA+TGG | + | chr6_3:30525630-30525649 | None:intergenic | 45.0% | |
| TTGATCTTTACGGGAGTGAC+TGG | + | chr6_3:30525641-30525660 | None:intergenic | 45.0% | |
| CGCATGGTGAAAATCGTATG+AGG | - | chr6_3:30526641-30526660 | Msa0947590:intron | 45.0% | |
| GCAATGTCTCTACGAACTGA+GGG | + | chr6_3:30526787-30526806 | None:intergenic | 45.0% | |
| TGCAATGTCTCTACGAACTG+AGG | + | chr6_3:30526788-30526807 | None:intergenic | 45.0% | |
| CCCCTTAAGGTGAATAAGTG+AGG | + | chr6_3:30526849-30526868 | None:intergenic | 45.0% | |
| ! | GGTGTGCTTTTAAATGCAGC+TGG | - | chr6_3:30527216-30527235 | Msa0947590:CDS | 45.0% |
| TTAAATGCAGCTGGAGATGG+TGG | - | chr6_3:30527225-30527244 | Msa0947590:CDS | 45.0% | |
| TTCATGTGGCATGGGCACTT+TGG | - | chr6_3:30525304-30525323 | Msa0947590:intron | 50.0% | |
| TCATGTGGCATGGGCACTTT+GGG | - | chr6_3:30525305-30525324 | Msa0947590:intron | 50.0% | |
| GTTGTCACTACTCAAGGTGG+GGG | - | chr6_3:30525390-30525409 | Msa0947590:intron | 50.0% | |
| ATACCCCCAACGACAGTTGA+CGG | - | chr6_3:30525662-30525681 | Msa0947590:intron | 50.0% | |
| CGGTCTGCAATTGCAATTGC+AGG | + | chr6_3:30526160-30526179 | None:intergenic | 50.0% | |
| ! | GAGATGGTGGCATGATAGGA+AGG | - | chr6_3:30527238-30527257 | Msa0947590:CDS | 50.0% |
| TTCATGTGGCATGGGCACTT+TGG | - | chr6_3:30525304-30525323 | Msa0947590:intron | 50.0% | |
| TCATGTGGCATGGGCACTTT+GGG | - | chr6_3:30525305-30525324 | Msa0947590:intron | 50.0% | |
| GTTGTCACTACTCAAGGTGG+GGG | - | chr6_3:30525390-30525409 | Msa0947590:intron | 50.0% | |
| ATACCCCCAACGACAGTTGA+CGG | - | chr6_3:30525662-30525681 | Msa0947590:intron | 50.0% | |
| CGGTCTGCAATTGCAATTGC+AGG | + | chr6_3:30526160-30526179 | None:intergenic | 50.0% | |
| ! | GAGATGGTGGCATGATAGGA+AGG | - | chr6_3:30527238-30527257 | Msa0947590:CDS | 50.0% |
| AACGGCCGTCAACTGTCGTT+GGG | + | chr6_3:30525670-30525689 | None:intergenic | 55.0% | |
| AACGACAGTTGACGGCCGTT+CGG | - | chr6_3:30525670-30525689 | Msa0947590:intron | 55.0% | |
| AGGTCGGGGTTCGAAAACTC+TGG | - | chr6_3:30526820-30526839 | Msa0947590:intron | 55.0% | |
| ! | GCTGGAGATGGTGGCATGAT+AGG | - | chr6_3:30527234-30527253 | Msa0947590:CDS | 55.0% |
| AACGGCCGTCAACTGTCGTT+GGG | + | chr6_3:30525670-30525689 | None:intergenic | 55.0% | |
| AACGACAGTTGACGGCCGTT+CGG | - | chr6_3:30525670-30525689 | Msa0947590:intron | 55.0% | |
| AGGTCGGGGTTCGAAAACTC+TGG | - | chr6_3:30526820-30526839 | Msa0947590:intron | 55.0% | |
| ! | GCTGGAGATGGTGGCATGAT+AGG | - | chr6_3:30527234-30527253 | Msa0947590:CDS | 55.0% |
| ACGGCCGTCAACTGTCGTTG+GGG | + | chr6_3:30525669-30525688 | None:intergenic | 60.0% | |
| GAACGGCCGTCAACTGTCGT+TGG | + | chr6_3:30525671-30525690 | None:intergenic | 60.0% | |
| ACGGCCGTCAACTGTCGTTG+GGG | + | chr6_3:30525669-30525688 | None:intergenic | 60.0% | |
| GAACGGCCGTCAACTGTCGT+TGG | + | chr6_3:30525671-30525690 | None:intergenic | 60.0% | |
| !! | GGTGGGGGTGTAGAAGTGCC+TGG | - | chr6_3:30525405-30525424 | Msa0947590:intron | 65.0% |
| CGGCCGTCAACTGTCGTTGG+GGG | + | chr6_3:30525668-30525687 | None:intergenic | 65.0% | |
| !! | GGTGGGGGTGTAGAAGTGCC+TGG | - | chr6_3:30525405-30525424 | Msa0947590:intron | 65.0% |
| CGGCCGTCAACTGTCGTTGG+GGG | + | chr6_3:30525668-30525687 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 30525043 | 30527447 | 30525043 | ID=Msa0947590;Name=Msa0947590 |
| chr6_3 | mRNA | 30525043 | 30527447 | 30525043 | ID=Msa0947590-mRNA-1;Parent=Msa0947590;Name=Msa0947590-mRNA-1;_AED=0.02;_eAED=0.02;_QI=68|1|1|1|1|1|3|173|283 |
| chr6_3 | exon | 30525043 | 30525255 | 30525043 | ID=Msa0947590-mRNA-1:exon:8086;Parent=Msa0947590-mRNA-1 |
| chr6_3 | exon | 30525798 | 30526117 | 30525798 | ID=Msa0947590-mRNA-1:exon:8085;Parent=Msa0947590-mRNA-1 |
| chr6_3 | exon | 30526888 | 30527447 | 30526888 | ID=Msa0947590-mRNA-1:exon:8084;Parent=Msa0947590-mRNA-1 |
| chr6_3 | five_prime_UTR | 30527380 | 30527447 | 30527380 | ID=Msa0947590-mRNA-1:five_prime_utr;Parent=Msa0947590-mRNA-1 |
| chr6_3 | CDS | 30526888 | 30527379 | 30526888 | ID=Msa0947590-mRNA-1:cds;Parent=Msa0947590-mRNA-1 |
| chr6_3 | CDS | 30525798 | 30526117 | 30525798 | ID=Msa0947590-mRNA-1:cds;Parent=Msa0947590-mRNA-1 |
| chr6_3 | CDS | 30525216 | 30525255 | 30525216 | ID=Msa0947590-mRNA-1:cds;Parent=Msa0947590-mRNA-1 |
| chr6_3 | three_prime_UTR | 30525043 | 30525215 | 30525043 | ID=Msa0947590-mRNA-1:three_prime_utr;Parent=Msa0947590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
