Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279650 | AET02997.1 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 3.33e-36 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279650 | sp|Q96386|MT3_CARPA | 66.667 | 66 | 18 | 3 | 1 | 63 | 1 | 65 | 1.44e-21 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279650 | G7LCX2 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 1.59e-36 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa1279650 | 0.840675 | 7.538457e-58 | -8.615850e-47 |
| Msa0048000 | Msa1279650 | 0.817025 | 4.083871e-52 | -8.615850e-47 |
| Msa0050730 | Msa1279650 | 0.859377 | 4.315207e-63 | -8.615850e-47 |
| Msa0050760 | Msa1279650 | 0.863180 | 2.991685e-64 | -8.615850e-47 |
| Msa0060600 | Msa1279650 | 0.813591 | 2.369314e-51 | -8.615850e-47 |
| Msa0071550 | Msa1279650 | 0.807456 | 5.009464e-50 | -8.615850e-47 |
| Msa0071910 | Msa1279650 | -0.802510 | 5.420419e-49 | -8.615850e-47 |
| Msa0078750 | Msa1279650 | 0.831601 | 1.521512e-55 | -8.615850e-47 |
| Msa0087110 | Msa1279650 | 0.818890 | 1.548039e-52 | -8.615850e-47 |
| Msa0089360 | Msa1279650 | 0.810045 | 1.400907e-50 | -8.615850e-47 |
| Msa0092990 | Msa1279650 | 0.835865 | 1.308044e-56 | -8.615850e-47 |
| Msa0096450 | Msa1279650 | 0.838086 | 3.542762e-57 | -8.615850e-47 |
| Msa0105340 | Msa1279650 | 0.835578 | 1.546493e-56 | -8.615850e-47 |
| Msa0105420 | Msa1279650 | 0.814926 | 1.201415e-51 | -8.615850e-47 |
| Msa0105700 | Msa1279650 | 0.804622 | 1.977285e-49 | -8.615850e-47 |
| Msa0610590 | Msa1279650 | 0.901437 | 2.681883e-78 | -8.615850e-47 |
| Msa0622340 | Msa1279650 | 0.824113 | 9.625264e-54 | -8.615850e-47 |
| Msa0626230 | Msa1279650 | 0.806426 | 8.273379e-50 | -8.615850e-47 |
| Msa0630960 | Msa1279650 | 0.822886 | 1.863157e-53 | -8.615850e-47 |
| Msa0631990 | Msa1279650 | 0.849301 | 3.531581e-60 | -8.615850e-47 |
| Msa0640380 | Msa1279650 | 0.831286 | 1.819721e-55 | -8.615850e-47 |
| Msa0647830 | Msa1279650 | 0.813745 | 2.190947e-51 | -8.615850e-47 |
| Msa0651190 | Msa1279650 | 0.905921 | 2.574205e-80 | -8.615850e-47 |
| Msa0651790 | Msa1279650 | 0.840508 | 8.337293e-58 | -8.615850e-47 |
| Msa0656270 | Msa1279650 | 0.809008 | 2.339730e-50 | -8.615850e-47 |
| Msa0662650 | Msa1279650 | 0.842704 | 2.197624e-58 | -8.615850e-47 |
| Msa0663710 | Msa1279650 | 0.818094 | 2.345412e-52 | -8.615850e-47 |
| Msa0670660 | Msa1279650 | 0.851742 | 7.279110e-61 | -8.615850e-47 |
| Msa0678820 | Msa1279650 | 0.858677 | 6.992301e-63 | -8.615850e-47 |
| Msa0694250 | Msa1279650 | 0.821591 | 3.722766e-53 | -8.615850e-47 |
| Msa0697140 | Msa1279650 | 0.833016 | 6.794442e-56 | -8.615850e-47 |
| Msa0700070 | Msa1279650 | 0.828911 | 6.909528e-55 | -8.615850e-47 |
| Msa0708860 | Msa1279650 | 0.843478 | 1.367056e-58 | -8.615850e-47 |
| Msa0714340 | Msa1279650 | 0.804573 | 2.024131e-49 | -8.615850e-47 |
| Msa0714380 | Msa1279650 | 0.806593 | 7.629178e-50 | -8.615850e-47 |
| Msa0720480 | Msa1279650 | 0.803033 | 4.229200e-49 | -8.615850e-47 |
| Msa0723140 | Msa1279650 | 0.801604 | 8.324279e-49 | -8.615850e-47 |
| Msa0767080 | Msa1279650 | 0.824848 | 6.463477e-54 | -8.615850e-47 |
| Msa0783370 | Msa1279650 | 0.800447 | 1.435076e-48 | -8.615850e-47 |
| Msa0835920 | Msa1279650 | 0.835345 | 1.770893e-56 | -8.615850e-47 |
| Msa0140910 | Msa1279650 | 0.840924 | 6.487577e-58 | -8.615850e-47 |
| Msa0149360 | Msa1279650 | 0.819284 | 1.259165e-52 | -8.615850e-47 |
| Msa0152170 | Msa1279650 | 0.804871 | 1.754083e-49 | -8.615850e-47 |
| Msa0164360 | Msa1279650 | 0.810036 | 1.407485e-50 | -8.615850e-47 |
| Msa0185480 | Msa1279650 | 0.825160 | 5.454948e-54 | -8.615850e-47 |
| Msa0185640 | Msa1279650 | -0.831139 | 1.977667e-55 | -8.615850e-47 |
| Msa0195770 | Msa1279650 | 0.800862 | 1.180730e-48 | -8.615850e-47 |
| Msa0203640 | Msa1279650 | 0.812300 | 4.543049e-51 | -8.615850e-47 |
| Msa0217400 | Msa1279650 | 0.813459 | 2.532767e-51 | -8.615850e-47 |
| Msa1233500 | Msa1279650 | 0.828047 | 1.116961e-54 | -8.615850e-47 |
| Msa1233890 | Msa1279650 | 0.800025 | 1.748551e-48 | -8.615850e-47 |
| Msa1244830 | Msa1279650 | 0.857576 | 1.485229e-62 | -8.615850e-47 |
| Msa1252070 | Msa1279650 | 0.838325 | 3.076119e-57 | -8.615850e-47 |
| Msa1256540 | Msa1279650 | -0.824771 | 6.738870e-54 | -8.615850e-47 |
| Msa1258380 | Msa1279650 | -0.800813 | 1.208671e-48 | -8.615850e-47 |
| Msa1271300 | Msa1279650 | 0.801869 | 7.345564e-49 | -8.615850e-47 |
| Msa1275770 | Msa1279650 | 0.802797 | 4.730617e-49 | -8.615850e-47 |
| Msa1279650 | Msa1292730 | 0.868305 | 7.209727e-66 | -8.615850e-47 |
| Msa1279650 | Msa1296940 | 0.807608 | 4.651620e-50 | -8.615850e-47 |
| Msa1279650 | Msa1296960 | -0.837070 | 6.456461e-57 | -8.615850e-47 |
| Msa1279650 | Msa1316560 | -0.820885 | 5.413639e-53 | -8.615850e-47 |
| Msa1279650 | Msa1322190 | 0.806030 | 1.002352e-49 | -8.615850e-47 |
| Msa1279650 | Msa1340650 | 0.815516 | 8.881155e-52 | -8.615850e-47 |
| Msa1279650 | Msa1343820 | 0.819159 | 1.344113e-52 | -8.615850e-47 |
| Msa1279650 | Msa1347620 | 0.802101 | 6.580502e-49 | -8.615850e-47 |
| Msa1279650 | Msa1355260 | 0.811118 | 8.214420e-51 | -8.615850e-47 |
| Msa1279650 | Msa1363890 | 0.823562 | 1.295365e-53 | -8.615850e-47 |
| Msa1279650 | Msa1365040 | -0.841571 | 4.384336e-58 | -8.615850e-47 |
| Msa1279650 | Msa1404540 | 0.815341 | 9.714404e-52 | -8.615850e-47 |
| Msa1279650 | Msa1408790 | 0.849001 | 4.278993e-60 | -8.615850e-47 |
| Msa1279650 | Msa1418580 | 0.814205 | 1.734721e-51 | -8.615850e-47 |
| Msa1279650 | Msa1419110 | 0.835756 | 1.393892e-56 | -8.615850e-47 |
| Msa1279650 | Msa1423450 | 0.825225 | 5.264576e-54 | -8.615850e-47 |
| Msa1279650 | Msa1431060 | 0.803664 | 3.130113e-49 | -8.615850e-47 |
| Msa1279650 | Msa1436040 | 0.847676 | 9.947294e-60 | -8.615850e-47 |
| Msa1279650 | Msa1439230 | 0.824195 | 9.208465e-54 | -8.615850e-47 |
| Msa1279650 | Msa1440600 | 0.860983 | 1.411353e-63 | -8.615850e-47 |
| Msa1279650 | Msa1451620 | -0.827208 | 1.775720e-54 | -8.615850e-47 |
| Msa1279650 | Msa1457670 | -0.855330 | 6.784398e-62 | -8.615850e-47 |
| Msa1279650 | Msa1458550 | 0.808825 | 2.560531e-50 | -8.615850e-47 |
| Msa1279650 | Msa1464560 | 0.806738 | 7.111006e-50 | -8.615850e-47 |
| Msa1279650 | Msa1464940 | 0.839737 | 1.324637e-57 | -8.615850e-47 |
| Msa0371540 | Msa1279650 | 0.814441 | 1.538372e-51 | -8.615850e-47 |
| Msa0379640 | Msa1279650 | 0.802988 | 4.318880e-49 | -8.615850e-47 |
| Msa0431690 | Msa1279650 | 0.809241 | 2.085784e-50 | -8.615850e-47 |
| Msa0449760 | Msa1279650 | 0.864290 | 1.352443e-64 | -8.615850e-47 |
| Msa0449830 | Msa1279650 | 0.822839 | 1.910957e-53 | -8.615850e-47 |
| Msa0455230 | Msa1279650 | 0.806310 | 8.755185e-50 | -8.615850e-47 |
| Msa0464900 | Msa1279650 | 0.800803 | 1.214409e-48 | -8.615850e-47 |
| Msa0465680 | Msa1279650 | -0.825615 | 4.255548e-54 | -8.615850e-47 |
| Msa0466060 | Msa1279650 | 0.813059 | 3.099478e-51 | -8.615850e-47 |
| Msa0482190 | Msa1279650 | -0.801699 | 7.958685e-49 | -8.615850e-47 |
| Msa0991670 | Msa1279650 | 0.813379 | 2.636880e-51 | -8.615850e-47 |
| Msa0999040 | Msa1279650 | 0.853679 | 2.037329e-61 | -8.615850e-47 |
| Msa1000020 | Msa1279650 | 0.807720 | 4.403265e-50 | -8.615850e-47 |
| Msa1019840 | Msa1279650 | -0.802466 | 5.535011e-49 | -8.615850e-47 |
| Msa1039880 | Msa1279650 | 0.830766 | 2.440447e-55 | -8.615850e-47 |
| Msa1043920 | Msa1279650 | 0.817251 | 3.632497e-52 | -8.615850e-47 |
| Msa1056640 | Msa1279650 | 0.827869 | 1.232674e-54 | -8.615850e-47 |
| Msa1060220 | Msa1279650 | 0.801881 | 7.304645e-49 | -8.615850e-47 |
| Msa1068200 | Msa1279650 | -0.815759 | 7.842670e-52 | -8.615850e-47 |
| Msa1075080 | Msa1279650 | -0.824382 | 8.319150e-54 | -8.615850e-47 |
| Msa1075220 | Msa1279650 | -0.813395 | 2.615435e-51 | -8.615850e-47 |
| Msa1080790 | Msa1279650 | 0.821386 | 4.150770e-53 | -8.615850e-47 |
| Msa1081600 | Msa1279650 | 0.805170 | 1.518753e-49 | -8.615850e-47 |
| Msa1087470 | Msa1279650 | 0.843629 | 1.245647e-58 | -8.615850e-47 |
| Msa1092090 | Msa1279650 | 0.812745 | 3.632523e-51 | -8.615850e-47 |
| Msa0243690 | Msa1279650 | 0.825215 | 5.292726e-54 | -8.615850e-47 |
| Msa0252180 | Msa1279650 | 0.801626 | 8.239484e-49 | -8.615850e-47 |
| Msa0257250 | Msa1279650 | 0.838219 | 3.274241e-57 | -8.615850e-47 |
| Msa0258760 | Msa1279650 | 0.808930 | 2.431218e-50 | -8.615850e-47 |
| Msa0260810 | Msa1279650 | 0.824555 | 7.574055e-54 | -8.615850e-47 |
| Msa0269450 | Msa1279650 | 0.833035 | 6.720950e-56 | -8.615850e-47 |
| Msa0282250 | Msa1279650 | 0.819129 | 1.365729e-52 | -8.615850e-47 |
| Msa0290650 | Msa1279650 | 0.824146 | 9.453134e-54 | -8.615850e-47 |
| Msa0296560 | Msa1279650 | 0.835337 | 1.779678e-56 | -8.615850e-47 |
| Msa0309550 | Msa1279650 | 0.802946 | 4.406883e-49 | -8.615850e-47 |
| Msa0323620 | Msa1279650 | 0.813759 | 2.174872e-51 | -8.615850e-47 |
| Msa0335040 | Msa1279650 | 0.812915 | 3.334403e-51 | -8.615850e-47 |
| Msa0342340 | Msa1279650 | -0.826258 | 2.994944e-54 | -8.615850e-47 |
| Msa0344910 | Msa1279650 | 0.801492 | 8.779498e-49 | -8.615850e-47 |
| Msa0347650 | Msa1279650 | 0.814501 | 1.492345e-51 | -8.615850e-47 |
| Msa0356960 | Msa1279650 | 0.883895 | 3.045377e-71 | -8.615850e-47 |
| Msa0363460 | Msa1279650 | 0.809304 | 2.022098e-50 | -8.615850e-47 |
| Msa1118930 | Msa1279650 | 0.817395 | 3.372383e-52 | -8.615850e-47 |
| Msa1131940 | Msa1279650 | -0.819693 | 1.015964e-52 | -8.615850e-47 |
| Msa1162550 | Msa1279650 | -0.820040 | 8.460755e-53 | -8.615850e-47 |
| Msa1166370 | Msa1279650 | 0.803791 | 2.944563e-49 | -8.615850e-47 |
| Msa1204980 | Msa1279650 | -0.820806 | 5.645986e-53 | -8.615850e-47 |
| Msa1205010 | Msa1279650 | -0.825841 | 3.761225e-54 | -8.615850e-47 |
| Msa1207380 | Msa1279650 | 0.818872 | 1.562539e-52 | -8.615850e-47 |
| Msa1217810 | Msa1279650 | 0.808170 | 3.532130e-50 | -8.615850e-47 |
| Msa1218650 | Msa1279650 | 0.818336 | 2.067727e-52 | -8.615850e-47 |
| Msa0484780 | Msa1279650 | 0.806655 | 7.402583e-50 | -8.615850e-47 |
| Msa0485500 | Msa1279650 | -0.802633 | 5.114942e-49 | -8.615850e-47 |
| Msa0517340 | Msa1279650 | 0.818982 | 1.474951e-52 | -8.615850e-47 |
| Msa0523460 | Msa1279650 | 0.806313 | 8.740736e-50 | -8.615850e-47 |
| Msa0528970 | Msa1279650 | 0.821263 | 4.431084e-53 | -8.615850e-47 |
| Msa0533050 | Msa1279650 | 0.813081 | 3.066296e-51 | -8.615850e-47 |
| Msa0543900 | Msa1279650 | 0.851138 | 1.079068e-60 | -8.615850e-47 |
| Msa0553460 | Msa1279650 | 0.808238 | 3.416461e-50 | -8.615850e-47 |
| Msa0556240 | Msa1279650 | 0.849182 | 3.811100e-60 | -8.615850e-47 |
| Msa0578970 | Msa1279650 | 0.902385 | 1.023553e-78 | -8.615850e-47 |
| Msa0584070 | Msa1279650 | 0.821555 | 3.793717e-53 | -8.615850e-47 |
| Msa0585700 | Msa1279650 | 0.819689 | 1.017834e-52 | -8.615850e-47 |
| Msa0587690 | Msa1279650 | 0.814637 | 1.391959e-51 | -8.615850e-47 |
| Msa0599580 | Msa1279650 | 0.814981 | 1.167941e-51 | -8.615850e-47 |
| Msa0599770 | Msa1279650 | 0.850640 | 1.489698e-60 | -8.615850e-47 |
| Msa0599890 | Msa1279650 | 0.849101 | 4.012747e-60 | -8.615850e-47 |
| Msa0843280 | Msa1279650 | 0.840181 | 1.014751e-57 | -8.615850e-47 |
| Msa0846810 | Msa1279650 | 0.871430 | 6.875923e-67 | -8.615850e-47 |
| Msa0882510 | Msa1279650 | 0.809690 | 1.670414e-50 | -8.615850e-47 |
| Msa0893810 | Msa1279650 | 0.809634 | 1.717199e-50 | -8.615850e-47 |
| Msa0896210 | Msa1279650 | 0.859959 | 2.883020e-63 | -8.615850e-47 |
| Msa0896220 | Msa1279650 | 0.833551 | 4.996827e-56 | -8.615850e-47 |
| Msa0899230 | Msa1279650 | 0.830102 | 3.546806e-55 | -8.615850e-47 |
| Msa0900200 | Msa1279650 | 0.806417 | 8.311327e-50 | -8.615850e-47 |
| Msa0903730 | Msa1279650 | 0.803597 | 3.230843e-49 | -8.615850e-47 |
| Msa0908170 | Msa1279650 | 0.825514 | 4.496901e-54 | -8.615850e-47 |
| Msa0910980 | Msa1279650 | -0.835122 | 2.016890e-56 | -8.615850e-47 |
| Msa0927670 | Msa1279650 | 0.839241 | 1.782246e-57 | -8.615850e-47 |
| Msa0944770 | Msa1279650 | 0.822238 | 2.635867e-53 | -8.615850e-47 |
| Msa0947590 | Msa1279650 | 0.820990 | 5.122633e-53 | -8.615850e-47 |
| Msa0960160 | Msa1279650 | 0.809992 | 1.438405e-50 | -8.615850e-47 |
| Msa0965520 | Msa1279650 | 0.807686 | 4.478501e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279650 | MtrunA17_Chr8g0360121 | 98.413 | 63 | 1 | 0 | 1 | 63 | 1 | 63 | 3.06e-40 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279650 | AT3G15353.1 | 57.576 | 66 | 23 | 2 | 1 | 61 | 1 | 66 | 3.08e-17 | 68.6 |
| Msa1279650 | AT3G15353.2 | 56.923 | 65 | 23 | 2 | 1 | 61 | 1 | 64 | 1.66e-16 | 66.6 |
Find 21 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGTTGTGGCATTGTTAC+TGG | 0.182186 | 8_3:-16897147 | Msa1279650:three_prime_UTR |
| AAATGTAATTGCCGTGAATT+TGG | 0.266307 | 8_3:-16897268 | Msa1279650:three_prime_UTR |
| CATGTTGTGGCATTGTTACT+GGG | 0.421135 | 8_3:-16897146 | Msa1279650:three_prime_UTR |
| ATGAGCTTGACATGTTTGTT+TGG | 0.442431 | 8_3:+16898012 | None:intergenic |
| TTGCAATCATGCTCAACAGC+TGG | 0.507300 | 8_3:+16897348 | None:intergenic |
| ATATATTCTTTAATGACCGC+AGG | 0.551610 | 8_3:+16897293 | None:intergenic |
| ATTATACAACTACCATGTTG+TGG | 0.572220 | 8_3:-16897159 | Msa1279650:three_prime_UTR |
| AGAGGAGCACTTACCCGCAC+TGG | 0.574771 | 8_3:+16897961 | None:intergenic |
| GTTGAGCATGATTGCAAGTG+TGG | 0.581040 | 8_3:-16897342 | Msa1279650:CDS |
| CTTGGTCGAGACTGTTGTCA+TGG | 0.585178 | 8_3:-16897376 | Msa1279650:CDS |
| TTCAGGAAGGGAAACAACTA+CGG | 0.588697 | 8_3:-16897540 | Msa1279650:intron |
| GCGCTGACAAGAGCCAGTGC+GGG | 0.597634 | 8_3:-16897974 | Msa1279650:intron |
| ACAAACATGTCAAGCTCATG+CGG | 0.602184 | 8_3:-16898008 | Msa1279650:exon |
| TGCGCTGACAAGAGCCAGTG+CGG | 0.611618 | 8_3:-16897975 | Msa1279650:CDS |
| CCAGTAACAATGCCACAACA+TGG | 0.639380 | 8_3:+16897147 | None:intergenic |
| ACTTGCACTAACTGCACCTG+CGG | 0.677689 | 8_3:-16897309 | Msa1279650:CDS |
| CCTCTTCTGAGTCTCGACAA+TGG | 0.679042 | 8_3:+16897512 | None:intergenic |
| AAGATATGTGCTGATGTCCA+TGG | 0.681433 | 8_3:+16897072 | None:intergenic |
| CCATTGTCGAGACTCAGAAG+AGG | 0.690774 | 8_3:-16897512 | Msa1279650:intron |
| TAATGCTGCTGAGACCACCA+TGG | 0.722784 | 8_3:-16897089 | Msa1279650:three_prime_UTR |
| ATATGTGCTGATGTCCATGG+TGG | 0.840627 | 8_3:+16897075 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACACTTATGATATAAG+TGG | - | chr8_3:16897262-16897281 | Msa1279650:three_prime_UTR | 20.0% |
| !! | GAGTTTATAAAAATAGCTTA+TGG | + | chr8_3:16897383-16897402 | None:intergenic | 20.0% |
| !! | ATAAACACTTATGATATAAG+TGG | - | chr8_3:16897262-16897281 | Msa1279650:three_prime_UTR | 20.0% |
| !! | GAGTTTATAAAAATAGCTTA+TGG | + | chr8_3:16897383-16897402 | None:intergenic | 20.0% |
| ! | TTTAGAAAAACGGCTTAATT+AGG | - | chr8_3:16897229-16897248 | Msa1279650:three_prime_UTR | 25.0% |
| ! | ATTATACACAATTTAAGCTC+AGG | - | chr8_3:16898064-16898083 | Msa1279650:five_prime_UTR | 25.0% |
| ! | TTTAGAAAAACGGCTTAATT+AGG | - | chr8_3:16897229-16897248 | Msa1279650:three_prime_UTR | 25.0% |
| AAGGTTAATGTTGTACTGTA+AGG | - | chr8_3:16897130-16897149 | Msa1279650:three_prime_UTR | 30.0% | |
| !!! | TTAAGCCGTTTTTCTAAACA+AGG | + | chr8_3:16897227-16897246 | None:intergenic | 30.0% |
| ! | TTGTTTTCATAAGCTGAAGT+CGG | - | chr8_3:16897345-16897364 | Msa1279650:CDS | 30.0% |
| TACCATAGCATCATATATGA+GGG | + | chr8_3:16897496-16897515 | None:intergenic | 30.0% | |
| ATACCATAGCATCATATATG+AGG | + | chr8_3:16897497-16897516 | None:intergenic | 30.0% | |
| TATATGATGCTATGGTATTC+AGG | - | chr8_3:16897499-16897518 | Msa1279650:intron | 30.0% | |
| ATATATTCTTTAATGACCGC+AGG | + | chr8_3:16897766-16897785 | None:intergenic | 30.0% | |
| AAATGTAATTGCCGTGAATT+TGG | - | chr8_3:16897788-16897807 | Msa1279650:intron | 30.0% | |
| ! | GTTTTGTATTGCCAAATTCA+CGG | + | chr8_3:16897802-16897821 | None:intergenic | 30.0% |
| ATTATACAACTACCATGTTG+TGG | - | chr8_3:16897897-16897916 | Msa1279650:intron | 30.0% | |
| AAGGTTAATGTTGTACTGTA+AGG | - | chr8_3:16897130-16897149 | Msa1279650:three_prime_UTR | 30.0% | |
| !!! | TTAAGCCGTTTTTCTAAACA+AGG | + | chr8_3:16897227-16897246 | None:intergenic | 30.0% |
| ! | TTGTTTTCATAAGCTGAAGT+CGG | - | chr8_3:16897345-16897364 | Msa1279650:CDS | 30.0% |
| TACCATAGCATCATATATGA+GGG | + | chr8_3:16897496-16897515 | None:intergenic | 30.0% | |
| ATACCATAGCATCATATATG+AGG | + | chr8_3:16897497-16897516 | None:intergenic | 30.0% | |
| TATATGATGCTATGGTATTC+AGG | - | chr8_3:16897499-16897518 | Msa1279650:intron | 30.0% | |
| ATATATTCTTTAATGACCGC+AGG | + | chr8_3:16897766-16897785 | None:intergenic | 30.0% | |
| AAATGTAATTGCCGTGAATT+TGG | - | chr8_3:16897788-16897807 | Msa1279650:intron | 30.0% | |
| ! | GTTTTGTATTGCCAAATTCA+CGG | + | chr8_3:16897802-16897821 | None:intergenic | 30.0% |
| ATTATACAACTACCATGTTG+TGG | - | chr8_3:16897897-16897916 | Msa1279650:intron | 30.0% | |
| ATGAGCTTGACATGTTTGTT+TGG | + | chr8_3:16897047-16897066 | None:intergenic | 35.0% | |
| AACCTTACAGTACAAGATAG+AGG | + | chr8_3:16897116-16897135 | None:intergenic | 35.0% | |
| GCGTTCACTCATTTATATAG+AGG | - | chr8_3:16897201-16897220 | Msa1279650:three_prime_UTR | 35.0% | |
| !! | AGAGGCCTTGTTTAGAAAAA+CGG | - | chr8_3:16897219-16897238 | Msa1279650:three_prime_UTR | 35.0% |
| CAGCTTATGAAAACAACTTC+AGG | + | chr8_3:16897341-16897360 | None:intergenic | 35.0% | |
| ACCATAGCATCATATATGAG+GGG | + | chr8_3:16897495-16897514 | None:intergenic | 35.0% | |
| TCGAGGAGTTATTAGAAACA+TGG | + | chr8_3:16897599-16897618 | None:intergenic | 35.0% | |
| ATGAGCTTGACATGTTTGTT+TGG | + | chr8_3:16897047-16897066 | None:intergenic | 35.0% | |
| AACCTTACAGTACAAGATAG+AGG | + | chr8_3:16897116-16897135 | None:intergenic | 35.0% | |
| GCGTTCACTCATTTATATAG+AGG | - | chr8_3:16897201-16897220 | Msa1279650:three_prime_UTR | 35.0% | |
| !! | AGAGGCCTTGTTTAGAAAAA+CGG | - | chr8_3:16897219-16897238 | Msa1279650:three_prime_UTR | 35.0% |
| CAGCTTATGAAAACAACTTC+AGG | + | chr8_3:16897341-16897360 | None:intergenic | 35.0% | |
| ACCATAGCATCATATATGAG+GGG | + | chr8_3:16897495-16897514 | None:intergenic | 35.0% | |
| TCGAGGAGTTATTAGAAACA+TGG | + | chr8_3:16897599-16897618 | None:intergenic | 35.0% | |
| ACAAACATGTCAAGCTCATG+CGG | - | chr8_3:16897048-16897067 | Msa1279650:three_prime_UTR | 40.0% | |
| CTCCTCTATCTTGTACTGTA+AGG | - | chr8_3:16897111-16897130 | Msa1279650:three_prime_UTR | 40.0% | |
| ! | TACGGATTTGTTTGTGAGAC+TGG | + | chr8_3:16897412-16897431 | None:intergenic | 40.0% |
| TCTCACAAACAAATCCGTAC+AGG | - | chr8_3:16897413-16897432 | Msa1279650:intron | 40.0% | |
| TCCCCTCATATATGATGCTA+TGG | - | chr8_3:16897491-16897510 | Msa1279650:intron | 40.0% | |
| TGATGCTATGGTATTCAGGA+AGG | - | chr8_3:16897503-16897522 | Msa1279650:intron | 40.0% | |
| GATGCTATGGTATTCAGGAA+GGG | - | chr8_3:16897504-16897523 | Msa1279650:intron | 40.0% | |
| TTCAGGAAGGGAAACAACTA+CGG | - | chr8_3:16897516-16897535 | Msa1279650:CDS | 40.0% | |
| ! | GTCAAATGTTTTGTGCAGCT+TGG | - | chr8_3:16897662-16897681 | Msa1279650:intron | 40.0% |
| CATGTTGTGGCATTGTTACT+GGG | - | chr8_3:16897910-16897929 | Msa1279650:intron | 40.0% | |
| ! | AAGATATGTGCTGATGTCCA+TGG | + | chr8_3:16897987-16898006 | None:intergenic | 40.0% |
| ACAAACATGTCAAGCTCATG+CGG | - | chr8_3:16897048-16897067 | Msa1279650:three_prime_UTR | 40.0% | |
| CTCCTCTATCTTGTACTGTA+AGG | - | chr8_3:16897111-16897130 | Msa1279650:three_prime_UTR | 40.0% | |
| ! | TACGGATTTGTTTGTGAGAC+TGG | + | chr8_3:16897412-16897431 | None:intergenic | 40.0% |
| TCTCACAAACAAATCCGTAC+AGG | - | chr8_3:16897413-16897432 | Msa1279650:intron | 40.0% | |
| TCCCCTCATATATGATGCTA+TGG | - | chr8_3:16897491-16897510 | Msa1279650:intron | 40.0% | |
| TGATGCTATGGTATTCAGGA+AGG | - | chr8_3:16897503-16897522 | Msa1279650:intron | 40.0% | |
| GATGCTATGGTATTCAGGAA+GGG | - | chr8_3:16897504-16897523 | Msa1279650:intron | 40.0% | |
| TTCAGGAAGGGAAACAACTA+CGG | - | chr8_3:16897516-16897535 | Msa1279650:CDS | 40.0% | |
| ! | GTCAAATGTTTTGTGCAGCT+TGG | - | chr8_3:16897662-16897681 | Msa1279650:intron | 40.0% |
| CATGTTGTGGCATTGTTACT+GGG | - | chr8_3:16897910-16897929 | Msa1279650:intron | 40.0% | |
| ! | AAGATATGTGCTGATGTCCA+TGG | + | chr8_3:16897987-16898006 | None:intergenic | 40.0% |
| ! | CATAAGCTGAAGTCGGCTTA+TGG | - | chr8_3:16897352-16897371 | Msa1279650:CDS | 45.0% |
| AACAAATCCGTACAGGCTTG+TGG | - | chr8_3:16897420-16897439 | Msa1279650:intron | 45.0% | |
| !! | CTAGCTTTTGCATTGAGTCG+AGG | + | chr8_3:16897616-16897635 | None:intergenic | 45.0% |
| TTGCAATCATGCTCAACAGC+TGG | + | chr8_3:16897711-16897730 | None:intergenic | 45.0% | |
| GTTGAGCATGATTGCAAGTG+TGG | - | chr8_3:16897714-16897733 | Msa1279650:intron | 45.0% | |
| CCAGTAACAATGCCACAACA+TGG | + | chr8_3:16897912-16897931 | None:intergenic | 45.0% | |
| CCATGTTGTGGCATTGTTAC+TGG | - | chr8_3:16897909-16897928 | Msa1279650:intron | 45.0% | |
| ! | ATATGTGCTGATGTCCATGG+TGG | + | chr8_3:16897984-16898003 | None:intergenic | 45.0% |
| ! | CATAAGCTGAAGTCGGCTTA+TGG | - | chr8_3:16897352-16897371 | Msa1279650:CDS | 45.0% |
| AACAAATCCGTACAGGCTTG+TGG | - | chr8_3:16897420-16897439 | Msa1279650:intron | 45.0% | |
| !! | CTAGCTTTTGCATTGAGTCG+AGG | + | chr8_3:16897616-16897635 | None:intergenic | 45.0% |
| TTGCAATCATGCTCAACAGC+TGG | + | chr8_3:16897711-16897730 | None:intergenic | 45.0% | |
| GTTGAGCATGATTGCAAGTG+TGG | - | chr8_3:16897714-16897733 | Msa1279650:intron | 45.0% | |
| CCAGTAACAATGCCACAACA+TGG | + | chr8_3:16897912-16897931 | None:intergenic | 45.0% | |
| CCATGTTGTGGCATTGTTAC+TGG | - | chr8_3:16897909-16897928 | Msa1279650:intron | 45.0% | |
| ! | ATATGTGCTGATGTCCATGG+TGG | + | chr8_3:16897984-16898003 | None:intergenic | 45.0% |
| !!! | TATTTCTATAAATAAAATAA+AGG | - | chr8_3:16897297-16897316 | Msa1279650:exon | 5.0% |
| !!! | TATTTCTATAAATAAAATAA+AGG | - | chr8_3:16897297-16897316 | Msa1279650:exon | 5.0% |
| CTACAAGCCACAAGCCTGTA+CGG | + | chr8_3:16897430-16897449 | None:intergenic | 50.0% | |
| CCTCTTCTGAGTCTCGACAA+TGG | + | chr8_3:16897547-16897566 | None:intergenic | 50.0% | |
| CCATTGTCGAGACTCAGAAG+AGG | - | chr8_3:16897544-16897563 | Msa1279650:intron | 50.0% | |
| CTTGGTCGAGACTGTTGTCA+TGG | - | chr8_3:16897680-16897699 | Msa1279650:intron | 50.0% | |
| ACTTGCACTAACTGCACCTG+CGG | - | chr8_3:16897747-16897766 | Msa1279650:intron | 50.0% | |
| TAATGCTGCTGAGACCACCA+TGG | - | chr8_3:16897967-16897986 | Msa1279650:intron | 50.0% | |
| CTACAAGCCACAAGCCTGTA+CGG | + | chr8_3:16897430-16897449 | None:intergenic | 50.0% | |
| CCTCTTCTGAGTCTCGACAA+TGG | + | chr8_3:16897547-16897566 | None:intergenic | 50.0% | |
| CCATTGTCGAGACTCAGAAG+AGG | - | chr8_3:16897544-16897563 | Msa1279650:intron | 50.0% | |
| CTTGGTCGAGACTGTTGTCA+TGG | - | chr8_3:16897680-16897699 | Msa1279650:intron | 50.0% | |
| ACTTGCACTAACTGCACCTG+CGG | - | chr8_3:16897747-16897766 | Msa1279650:intron | 50.0% | |
| TAATGCTGCTGAGACCACCA+TGG | - | chr8_3:16897967-16897986 | Msa1279650:intron | 50.0% | |
| ! | TGCGCTGACAAGAGCCAGTG+CGG | - | chr8_3:16897081-16897100 | Msa1279650:three_prime_UTR | 60.0% |
| !! | AGAGGAGCACTTACCCGCAC+TGG | + | chr8_3:16897098-16897117 | None:intergenic | 60.0% |
| ! | TGCGCTGACAAGAGCCAGTG+CGG | - | chr8_3:16897081-16897100 | Msa1279650:three_prime_UTR | 60.0% |
| !! | AGAGGAGCACTTACCCGCAC+TGG | + | chr8_3:16897098-16897117 | None:intergenic | 60.0% |
| ! | GCGCTGACAAGAGCCAGTGC+GGG | - | chr8_3:16897082-16897101 | Msa1279650:three_prime_UTR | 65.0% |
| ! | GCGCTGACAAGAGCCAGTGC+GGG | - | chr8_3:16897082-16897101 | Msa1279650:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 16896993 | 16898085 | 16896993 | ID=Msa1279650;Name=Msa1279650 |
| chr8_3 | mRNA | 16896993 | 16898085 | 16896993 | ID=Msa1279650-mRNA-1;Parent=Msa1279650;Name=Msa1279650-mRNA-1;_AED=0.08;_eAED=0.08;_QI=61|1|1|1|1|1|3|309|63 |
| chr8_3 | exon | 16896993 | 16897398 | 16896993 | ID=Msa1279650-mRNA-1:exon:6596;Parent=Msa1279650-mRNA-1 |
| chr8_3 | exon | 16897513 | 16897557 | 16897513 | ID=Msa1279650-mRNA-1:exon:6595;Parent=Msa1279650-mRNA-1 |
| chr8_3 | exon | 16897975 | 16898085 | 16897975 | ID=Msa1279650-mRNA-1:exon:6594;Parent=Msa1279650-mRNA-1 |
| chr8_3 | five_prime_UTR | 16898025 | 16898085 | 16898025 | ID=Msa1279650-mRNA-1:five_prime_utr;Parent=Msa1279650-mRNA-1 |
| chr8_3 | CDS | 16897975 | 16898024 | 16897975 | ID=Msa1279650-mRNA-1:cds;Parent=Msa1279650-mRNA-1 |
| chr8_3 | CDS | 16897513 | 16897557 | 16897513 | ID=Msa1279650-mRNA-1:cds;Parent=Msa1279650-mRNA-1 |
| chr8_3 | CDS | 16897302 | 16897398 | 16897302 | ID=Msa1279650-mRNA-1:cds;Parent=Msa1279650-mRNA-1 |
| chr8_3 | three_prime_UTR | 16896993 | 16897301 | 16896993 | ID=Msa1279650-mRNA-1:three_prime_utr;Parent=Msa1279650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
