Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982120 | XP_013456230.1 | 97.109 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982120 | sp|Q9LXU9|IRKI_ARATH | 52.389 | 586 | 219 | 14 | 24 | 586 | 12 | 560 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982120 | A0A072ULJ6 | 97.109 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1189 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006050 | Msa0982120 | 0.820847 | 5.525015e-53 | -8.615850e-47 |
| Msa0014790 | Msa0982120 | 0.800934 | 1.141900e-48 | -8.615850e-47 |
| Msa0020320 | Msa0982120 | 0.801678 | 8.041199e-49 | -8.615850e-47 |
| Msa0054760 | Msa0982120 | 0.826429 | 2.726630e-54 | -8.615850e-47 |
| Msa0072830 | Msa0982120 | 0.806721 | 7.167549e-50 | -8.615850e-47 |
| Msa0072860 | Msa0982120 | 0.807548 | 4.791007e-50 | -8.615850e-47 |
| Msa0618260 | Msa0982120 | 0.801483 | 8.813059e-49 | -8.615850e-47 |
| Msa0635130 | Msa0982120 | 0.800273 | 1.557143e-48 | -8.615850e-47 |
| Msa0639880 | Msa0982120 | 0.812564 | 3.978493e-51 | -8.615850e-47 |
| Msa0672850 | Msa0982120 | 0.801556 | 8.518023e-49 | -8.615850e-47 |
| Msa0688760 | Msa0982120 | 0.802471 | 5.523811e-49 | -8.615850e-47 |
| Msa0712440 | Msa0982120 | 0.809901 | 1.504401e-50 | -8.615850e-47 |
| Msa0718920 | Msa0982120 | 0.807794 | 4.247541e-50 | -8.615850e-47 |
| Msa0739390 | Msa0982120 | 0.807635 | 4.589616e-50 | -8.615850e-47 |
| Msa0747900 | Msa0982120 | 0.806722 | 7.165542e-50 | -8.615850e-47 |
| Msa0749900 | Msa0982120 | 0.805731 | 1.158947e-49 | -8.615850e-47 |
| Msa0752580 | Msa0982120 | 0.803749 | 3.004283e-49 | -8.615850e-47 |
| Msa0766030 | Msa0982120 | 0.812410 | 4.299252e-51 | -8.615850e-47 |
| Msa0770890 | Msa0982120 | 0.808566 | 2.907771e-50 | -8.615850e-47 |
| Msa0830120 | Msa0982120 | 0.812866 | 3.417434e-51 | -8.615850e-47 |
| Msa0830450 | Msa0982120 | 0.816972 | 4.198561e-52 | -8.615850e-47 |
| Msa0842050 | Msa0982120 | 0.840449 | 8.637454e-58 | -8.615850e-47 |
| Msa0143710 | Msa0982120 | -0.807473 | 4.969374e-50 | -8.615850e-47 |
| Msa0153440 | Msa0982120 | 0.821461 | 3.988918e-53 | -8.615850e-47 |
| Msa0164630 | Msa0982120 | 0.801815 | 7.536412e-49 | -8.615850e-47 |
| Msa0217470 | Msa0982120 | 0.801815 | 7.535915e-49 | -8.615850e-47 |
| Msa0232860 | Msa0982120 | 0.811575 | 6.535831e-51 | -8.615850e-47 |
| Msa0389060 | Msa0982120 | 0.801091 | 1.060597e-48 | -8.615850e-47 |
| Msa0982120 | Msa0984860 | 0.800874 | 1.174617e-48 | -8.615850e-47 |
| Msa0982120 | Msa1014350 | 0.800604 | 1.333176e-48 | -8.615850e-47 |
| Msa0982120 | Msa1036360 | 0.800419 | 1.454087e-48 | -8.615850e-47 |
| Msa0982120 | Msa1076520 | 0.800868 | 1.177501e-48 | -8.615850e-47 |
| Msa0982120 | Msa1076640 | 0.805405 | 1.356151e-49 | -8.615850e-47 |
| Msa0982120 | Msa1085370 | 0.810113 | 1.354362e-50 | -8.615850e-47 |
| Msa0982120 | Msa1113210 | 0.815442 | 9.224840e-52 | -8.615850e-47 |
| Msa0982120 | Msa1138450 | 0.807922 | 3.988588e-50 | -8.615850e-47 |
| Msa0982120 | Msa1138480 | 0.806332 | 8.658947e-50 | -8.615850e-47 |
| Msa0982120 | Msa1182780 | 0.800366 | 1.490874e-48 | -8.615850e-47 |
| Msa0982120 | Msa1182800 | 0.817568 | 3.083157e-52 | -8.615850e-47 |
| Msa0982120 | Msa1182830 | 0.827135 | 1.849135e-54 | -8.615850e-47 |
| Msa0982120 | Msa1184640 | 0.818559 | 1.840341e-52 | -8.615850e-47 |
| Msa0982120 | Msa1193400 | 0.822299 | 2.551169e-53 | -8.615850e-47 |
| Msa0982120 | Msa1193430 | 0.806550 | 7.791164e-50 | -8.615850e-47 |
| Msa0982120 | Msa1205520 | 0.802455 | 5.563801e-49 | -8.615850e-47 |
| Msa0982120 | Msa1211390 | 0.801986 | 6.951549e-49 | -8.615850e-47 |
| Msa0982120 | Msa1212740 | 0.808297 | 3.319208e-50 | -8.615850e-47 |
| Msa0982120 | Msa1219780 | -0.804317 | 2.289232e-49 | -8.615850e-47 |
| Msa0982120 | Msa1243730 | 0.815797 | 7.689239e-52 | -8.615850e-47 |
| Msa0982120 | Msa1249410 | 0.815940 | 7.144958e-52 | -8.615850e-47 |
| Msa0982120 | Msa1266710 | -0.802707 | 4.937307e-49 | -8.615850e-47 |
| Msa0982120 | Msa1272950 | 0.803914 | 2.776930e-49 | -8.615850e-47 |
| Msa0982120 | Msa1280020 | 0.805631 | 1.216142e-49 | -8.615850e-47 |
| Msa0982120 | Msa1349810 | 0.826410 | 2.755443e-54 | -8.615850e-47 |
| Msa0982120 | Msa1359620 | 0.866991 | 1.900804e-65 | -8.615850e-47 |
| Msa0982120 | Msa1384980 | 0.804338 | 2.265837e-49 | -8.615850e-47 |
| Msa0982120 | Msa1403700 | 0.866487 | 2.749875e-65 | -8.615850e-47 |
| Msa0982120 | Msa1407210 | -0.814369 | 1.595834e-51 | -8.615850e-47 |
| Msa0982120 | Msa1408190 | 0.809177 | 2.152125e-50 | -8.615850e-47 |
| Msa0982120 | Msa1409060 | -0.841547 | 4.446813e-58 | -8.615850e-47 |
| Msa0982120 | Msa1432350 | 0.804917 | 1.715641e-49 | -8.615850e-47 |
| Msa0982120 | Msa1437650 | 0.806904 | 6.559292e-50 | -8.615850e-47 |
| Msa0982120 | Msa1443550 | 0.821254 | 4.452743e-53 | -8.615850e-47 |
| Msa0982120 | Msa1448990 | 0.805961 | 1.036602e-49 | -8.615850e-47 |
| Msa0273230 | Msa0982120 | 0.807470 | 4.976310e-50 | -8.615850e-47 |
| Msa0312780 | Msa0982120 | 0.804036 | 2.619851e-49 | -8.615850e-47 |
| Msa0359630 | Msa0982120 | 0.806416 | 8.313669e-50 | -8.615850e-47 |
| Msa0528170 | Msa0982120 | 0.801141 | 1.035458e-48 | -8.615850e-47 |
| Msa0599250 | Msa0982120 | 0.846754 | 1.780230e-59 | -8.615850e-47 |
| Msa0846180 | Msa0982120 | 0.808857 | 2.520757e-50 | -8.615850e-47 |
| Msa0871470 | Msa0982120 | 0.846540 | 2.037263e-59 | -8.615850e-47 |
| Msa0884300 | Msa0982120 | 0.826685 | 2.368961e-54 | -8.615850e-47 |
| Msa0904630 | Msa0982120 | 0.824853 | 6.446253e-54 | -8.615850e-47 |
| Msa0911910 | Msa0982120 | 0.828441 | 8.972958e-55 | -8.615850e-47 |
| Msa0936650 | Msa0982120 | 0.809476 | 1.857345e-50 | -8.615850e-47 |
| Msa0973890 | Msa0982120 | 0.815451 | 9.183589e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982120 | MtrunA17_Chr4g0033061 | 97.109 | 588 | 17 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1189 |
| Msa0982120 | MtrunA17_Chr2g0329091 | 68.791 | 612 | 142 | 18 | 1 | 586 | 1 | 589 | 0.0 | 781 |
| Msa0982120 | MtrunA17_Chr8g0392321 | 38.889 | 324 | 176 | 5 | 265 | 584 | 150 | 455 | 7.60e-70 | 233 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0982120 | AT5G12900.1 | 52.389 | 586 | 219 | 14 | 24 | 586 | 12 | 560 | 0.0 | 558 |
| Msa0982120 | AT1G12330.1 | 34.234 | 444 | 248 | 11 | 150 | 583 | 63 | 472 | 1.07e-67 | 228 |
Find 131 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGTTCTGTTCTGTTTCA+TGG | 0.100624 | 6_4:+21763156 | Msa0982120:exon |
| TCATGACGGTCTATGAATTT+TGG | 0.116469 | 6_4:-21765307 | None:intergenic |
| GTATTACCACTACTCTAAAT+TGG | 0.202218 | 6_4:+21765455 | Msa0982120:CDS |
| TTTCTTCAATGTTGTTTATA+AGG | 0.223578 | 6_4:-21765123 | None:intergenic |
| ACATGTTTCCTAGTTTATTT+AGG | 0.258740 | 6_4:-21765743 | None:intergenic |
| TCTCGTCATTCGTTGCTCTT+AGG | 0.269047 | 6_4:+21765347 | Msa0982120:CDS |
| AAACTGGTGTACAAGATTAT+AGG | 0.305192 | 6_4:+21764312 | Msa0982120:CDS |
| CAGAACTGCCTTTGAGTACT+TGG | 0.306166 | 6_4:-21765209 | None:intergenic |
| ATGTTAAAGATAGGGTATTA+AGG | 0.310637 | 6_4:+21765689 | Msa0982120:CDS |
| CTTACTCCTGTAGCTTTCAT+TGG | 0.318767 | 6_4:-21764474 | None:intergenic |
| AACTACAAGACAGGAAATTA+AGG | 0.323447 | 6_4:+21763234 | Msa0982120:CDS |
| TGCAATTATAACTAGTGAAT+TGG | 0.324077 | 6_4:+21764553 | Msa0982120:CDS |
| GATTTATGAAAGCTTCAAAA+TGG | 0.324347 | 6_4:-21765234 | None:intergenic |
| ACAAGAGCCGGTTACGGATT+TGG | 0.324635 | 6_4:-21764417 | None:intergenic |
| GTTTAATCTGTTCACAAAGT+TGG | 0.328307 | 6_4:-21764961 | None:intergenic |
| TTCTGAGATGCGATGTTCAT+TGG | 0.343847 | 6_4:+21764844 | Msa0982120:CDS |
| AACAGAGAAACAGAACAAAA+TGG | 0.345493 | 6_4:-21763140 | None:intergenic |
| TTTAATCTGTTCACAAAGTT+GGG | 0.345847 | 6_4:-21764960 | None:intergenic |
| AATTCACTAGTTATAATTGC+AGG | 0.346045 | 6_4:-21764551 | None:intergenic |
| TGAGAAACAGAGCGTGAAAC+AGG | 0.350674 | 6_4:-21763349 | None:intergenic |
| CCCAACTTTCAGATATTGTT+AGG | 0.351274 | 6_4:-21764262 | None:intergenic |
| AGTTGGGATGAAGGAGAATC+AGG | 0.354966 | 6_4:+21764278 | Msa0982120:CDS |
| TGCAGGGTTACATTTATTGC+AGG | 0.358818 | 6_4:-21764534 | None:intergenic |
| CAGAACATATGTGAGATTCT+AGG | 0.359220 | 6_4:-21764385 | None:intergenic |
| TAAGAGAAGAAACAGTTTAG+AGG | 0.360943 | 6_4:+21764493 | Msa0982120:CDS |
| TTAGGCATTTCGTGTGGTTC+TGG | 0.364717 | 6_4:-21764244 | None:intergenic |
| AGCTCTTAGTTCCACAGCTT+TGG | 0.364810 | 6_4:-21763266 | None:intergenic |
| AACCTTTGATCATCGCTATA+TGG | 0.369774 | 6_4:+21765603 | Msa0982120:CDS |
| ACCATGATCTTAACTTTGCT+TGG | 0.370606 | 6_4:-21765652 | None:intergenic |
| ATTCTCACAGGTGTGAAAAC+AGG | 0.383820 | 6_4:-21763391 | None:intergenic |
| GCCTAACAATATCTGAAAGT+TGG | 0.386328 | 6_4:+21764261 | Msa0982120:CDS |
| TGATTTCGTGGTTGTTTCCT+CGG | 0.394790 | 6_4:+21764666 | Msa0982120:CDS |
| CTCTAAATTGGATCAGGCCT+TGG | 0.408199 | 6_4:+21765467 | Msa0982120:CDS |
| TTGCTTGGACCCTGTGACCT+AGG | 0.408370 | 6_4:-21765637 | None:intergenic |
| CGTGGCAGGAACAACAATAT+TGG | 0.408732 | 6_4:-21764600 | None:intergenic |
| CCTAACAATATCTGAAAGTT+GGG | 0.413549 | 6_4:+21764262 | Msa0982120:CDS |
| AACTGGTGTACAAGATTATA+GGG | 0.415849 | 6_4:+21764313 | Msa0982120:CDS |
| TTCCTAGTTTATTTAGGCTG+TGG | 0.418321 | 6_4:-21765737 | None:intergenic |
| ATAAACCAAGTTCAAGAAAA+GGG | 0.423850 | 6_4:+21764336 | Msa0982120:CDS |
| TCCTCAGATTCTGCTCTACT+TGG | 0.425291 | 6_4:-21764719 | None:intergenic |
| GTTAAGATCATGGTTAATCC+AGG | 0.427966 | 6_4:+21765661 | Msa0982120:CDS |
| TAAGGTGTAAGGTCCTTTGC+AGG | 0.436843 | 6_4:+21765707 | Msa0982120:CDS |
| AAAGCTTGAAGGAGCTGCTC+AGG | 0.437990 | 6_4:-21765490 | None:intergenic |
| TCTGAGATGCGATGTTCATT+GGG | 0.440475 | 6_4:+21764845 | Msa0982120:CDS |
| GATAAACCAAGTTCAAGAAA+AGG | 0.442732 | 6_4:+21764335 | Msa0982120:CDS |
| GATGACACCAAATCCGTAAC+CGG | 0.450685 | 6_4:+21764410 | Msa0982120:CDS |
| CTGGAATGAGGTACTGAGAA+AGG | 0.452317 | 6_4:+21765378 | Msa0982120:CDS |
| GAGACAGAAGATGGAGTACT+TGG | 0.456731 | 6_4:+21764874 | Msa0982120:CDS |
| CAGCTACAAAGAAAGCTTGA+AGG | 0.457579 | 6_4:-21765501 | None:intergenic |
| TCAGGAAACAGCATAGAAAC+TGG | 0.457604 | 6_4:+21764296 | Msa0982120:CDS |
| AGAATCTGAGGATGTTTCTC+AGG | 0.458365 | 6_4:+21764730 | Msa0982120:CDS |
| GAATAGAGACGTGGCGTTGG+TGG | 0.463871 | 6_4:+21764817 | Msa0982120:CDS |
| CAGAGAGGGAAACCAATTGA+TGG | 0.465923 | 6_4:+21764998 | Msa0982120:CDS |
| CTCCTGTAGCTTTCATTGGT+AGG | 0.467705 | 6_4:-21764470 | None:intergenic |
| CAATGGTGGGTTGAAAGAAA+AGG | 0.480886 | 6_4:-21765554 | None:intergenic |
| TTGCTCTTAGGAACTTGAGC+TGG | 0.483111 | 6_4:+21765359 | Msa0982120:CDS |
| GAATGAGGAAGTAATGATAG+AGG | 0.484289 | 6_4:+21765045 | Msa0982120:CDS |
| ATCCCTTGCCTGCGTCTGCA+TGG | 0.485992 | 6_4:-21764936 | None:intergenic |
| ATCATTACTTCCTCATTCAC+AGG | 0.490591 | 6_4:-21765040 | None:intergenic |
| CCACTACTCTAAATTGGATC+AGG | 0.492248 | 6_4:+21765461 | Msa0982120:CDS |
| TAGTTCCACAGCTTTGGCTA+TGG | 0.496028 | 6_4:-21763260 | None:intergenic |
| ATATCTGAAAGTTGGGATGA+AGG | 0.496923 | 6_4:+21764269 | Msa0982120:CDS |
| ACGAATATTAATTATCACAT+AGG | 0.499524 | 6_4:-21765790 | None:intergenic |
| TGAAGGAGCTGCTCAGGCCA+AGG | 0.500301 | 6_4:-21765484 | None:intergenic |
| TCGCTTGGCGGTCTTCATGA+CGG | 0.500477 | 6_4:-21765321 | None:intergenic |
| AGATAGGGTATTAAGGTGTA+AGG | 0.504352 | 6_4:+21765696 | Msa0982120:CDS |
| ATTTGCACAAGAGCCGGTTA+CGG | 0.506731 | 6_4:-21764423 | None:intergenic |
| CAATATTGTTGTTCCTGCCA+CGG | 0.511774 | 6_4:+21764601 | Msa0982120:CDS |
| AAATACAATTCTCAAAGTCT+TGG | 0.513794 | 6_4:-21765267 | None:intergenic |
| AGTCTGAAACGAAAAGCAAA+GGG | 0.516834 | 6_4:+21764642 | Msa0982120:CDS |
| TCTCAGGTTCTCAAGGACAT+AGG | 0.520348 | 6_4:+21764746 | Msa0982120:CDS |
| TATATGATTTGCACAAGAGC+CGG | 0.520360 | 6_4:-21764429 | None:intergenic |
| GGGAGAGTTGAGACAGAAGA+TGG | 0.523009 | 6_4:+21764865 | Msa0982120:CDS |
| AAAGCAAAGGGGTGATTTCG+TGG | 0.524133 | 6_4:+21764654 | Msa0982120:CDS |
| ATGACGAGAATTTCGCTTGG+CGG | 0.524799 | 6_4:-21765333 | None:intergenic |
| AGATATGAGTCCTAGGTCAC+AGG | 0.524990 | 6_4:+21765627 | Msa0982120:CDS |
| GACGAGTGGGAATCCGTGGC+AGG | 0.527984 | 6_4:-21764614 | None:intergenic |
| CCCTTAAAACTCCCAATGGT+GGG | 0.532372 | 6_4:-21765567 | None:intergenic |
| ATATGGAAGATATGAGTCCT+AGG | 0.535709 | 6_4:+21765620 | Msa0982120:CDS |
| CACCTACCAATGAAAGCTAC+AGG | 0.535955 | 6_4:+21764468 | Msa0982120:CDS |
| ACCCTTAAAACTCCCAATGG+TGG | 0.537328 | 6_4:-21765568 | None:intergenic |
| ATTCACTAGTTATAATTGCA+GGG | 0.541370 | 6_4:-21764550 | None:intergenic |
| TCCAAGCAAAGTTAAGATCA+TGG | 0.542194 | 6_4:+21765651 | Msa0982120:CDS |
| TTATGCTTCTTCTTTAACCG+AGG | 0.546831 | 6_4:-21764683 | None:intergenic |
| AGGAGATAGAAACTTTGCAT+TGG | 0.549596 | 6_4:-21763323 | None:intergenic |
| GGATGTTTCTCAGGTTCTCA+AGG | 0.550773 | 6_4:+21764739 | Msa0982120:CDS |
| TCTAAATTCCAAGTACTCAA+AGG | 0.555958 | 6_4:+21765201 | Msa0982120:CDS |
| CATAGGAATAATGTCAATTG+AGG | 0.564077 | 6_4:+21764763 | Msa0982120:CDS |
| AATCCATGCAGACGCAGGCA+AGG | 0.566446 | 6_4:+21764933 | Msa0982120:CDS |
| TTCTCACAGGTGTGAAAACA+GGG | 0.567671 | 6_4:-21763390 | None:intergenic |
| AAATTCAATGCCTGTGAATG+AGG | 0.569144 | 6_4:+21765030 | Msa0982120:CDS |
| CAGTCTGAAACGAAAAGCAA+AGG | 0.571815 | 6_4:+21764641 | Msa0982120:CDS |
| TGGAATGAGGTACTGAGAAA+GGG | 0.572883 | 6_4:+21765379 | Msa0982120:CDS |
| AAACTCAGAAACTACAAGAC+AGG | 0.574127 | 6_4:+21763225 | Msa0982120:CDS |
| TTAAGATCATGGTTAATCCA+GGG | 0.574929 | 6_4:+21765662 | Msa0982120:CDS |
| CTGTGGATTTGTACCTGCAA+AGG | 0.576366 | 6_4:-21765720 | None:intergenic |
| TTAGTAATCTTCCTCAGAGA+GGG | 0.576543 | 6_4:+21764984 | Msa0982120:CDS |
| CTAGTGAATTGGAGAGTGCA+AGG | 0.578519 | 6_4:+21764564 | Msa0982120:CDS |
| CGAGAATAGAGACGTGGCGT+TGG | 0.578816 | 6_4:+21764814 | Msa0982120:CDS |
| TTCAGACTGAAACGACGAGT+GGG | 0.579873 | 6_4:-21764627 | None:intergenic |
| TAGGAACTTGAGCTGGAATG+AGG | 0.582495 | 6_4:+21765366 | Msa0982120:CDS |
| TTCTGGTTGTACGATACAAG+TGG | 0.583451 | 6_4:-21764227 | None:intergenic |
| CTATCTTTAACATAAAACCC+TGG | 0.589585 | 6_4:-21765679 | None:intergenic |
| TTCCATATAGCGATGATCAA+AGG | 0.589637 | 6_4:-21765605 | None:intergenic |
| GAAGCAATCCATGCAGACGC+AGG | 0.589707 | 6_4:+21764928 | Msa0982120:CDS |
| CTTCATGCTGCTTTAATGCG+AGG | 0.590460 | 6_4:+21763289 | Msa0982120:CDS |
| CCTGATCCAATTTAGAGTAG+TGG | 0.590540 | 6_4:-21765461 | None:intergenic |
| CGAATGACGAGAATTTCGCT+TGG | 0.594200 | 6_4:-21765336 | None:intergenic |
| ATCCATGCAGACGCAGGCAA+GGG | 0.596130 | 6_4:+21764934 | Msa0982120:CDS |
| ATCCACAGCCTAAATAAACT+AGG | 0.598571 | 6_4:+21765735 | Msa0982120:exon |
| GAGAAACAGAGCGTGAAACA+GGG | 0.602864 | 6_4:-21763348 | None:intergenic |
| AATGAGGAAGTAATGATAGA+GGG | 0.603683 | 6_4:+21765046 | Msa0982120:CDS |
| ACAGAGCGTGAAACAGGGGA+AGG | 0.616115 | 6_4:-21763343 | None:intergenic |
| TCCAAGTAGAGCAGAATCTG+AGG | 0.620203 | 6_4:+21764718 | Msa0982120:CDS |
| AAACGACGAGTGGGAATCCG+TGG | 0.621697 | 6_4:-21764618 | None:intergenic |
| TCAACCCTTAAAACTCCCAA+TGG | 0.624174 | 6_4:-21765571 | None:intergenic |
| TAAACCAAGTTCAAGAAAAG+GGG | 0.629543 | 6_4:+21764337 | Msa0982120:CDS |
| GATATGAGTCCTAGGTCACA+GGG | 0.630552 | 6_4:+21765628 | Msa0982120:CDS |
| TCAATTGGTTTCCCTCTCTG+AGG | 0.637014 | 6_4:-21764995 | None:intergenic |
| ACATATGTGAGATTCTAGGT+TGG | 0.637680 | 6_4:-21764381 | None:intergenic |
| CTTAGTAATCTTCCTCAGAG+AGG | 0.639380 | 6_4:+21764983 | Msa0982120:CDS |
| TTTCAGACTGAAACGACGAG+TGG | 0.641833 | 6_4:-21764628 | None:intergenic |
| TTGTAGCTGCAAAATGCATG+TGG | 0.649740 | 6_4:+21765515 | Msa0982120:CDS |
| GGTTGCCATAGCCAAAGCTG+TGG | 0.663368 | 6_4:+21763255 | Msa0982120:CDS |
| ATATTGTTAGGCATTTCGTG+TGG | 0.667524 | 6_4:-21764250 | None:intergenic |
| TCTGGTTGTACGATACAAGT+GGG | 0.669806 | 6_4:-21764226 | None:intergenic |
| AAAGGGGTACTACTACCTTG+TGG | 0.678852 | 6_4:+21764353 | Msa0982120:CDS |
| TCTAGGTTGGTAAAACCACA+AGG | 0.696108 | 6_4:-21764368 | None:intergenic |
| AGAAACAGAGCGTGAAACAG+GGG | 0.697253 | 6_4:-21763347 | None:intergenic |
| AGCGAACGAGAATAGAGACG+TGG | 0.717689 | 6_4:+21764808 | Msa0982120:CDS |
| GTCTGAAACGAAAAGCAAAG+GGG | 0.723496 | 6_4:+21764643 | Msa0982120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTTACTTTTGATT+TGG | + | chr6_4:21763500-21763519 | Msa0982120:intron | 15.0% |
| !!! | AATTGTATTTTTCAAAAGAA+CGG | + | chr6_4:21765280-21765299 | Msa0982120:CDS | 15.0% |
| !! | ATCAAGAAAATCAAAATTGA+AGG | - | chr6_4:21763427-21763446 | None:intergenic | 20.0% |
| !!! | TTTTGATTTTCTTGATGAAA+AGG | + | chr6_4:21763431-21763450 | Msa0982120:intron | 20.0% |
| !!! | TTTGATTTTCTTGATGAAAA+GGG | + | chr6_4:21763432-21763451 | Msa0982120:intron | 20.0% |
| !! | TTGTTACTATTATCATTGAT+AGG | + | chr6_4:21763544-21763563 | Msa0982120:intron | 20.0% |
| !! | TGTTACTATTATCATTGATA+GGG | + | chr6_4:21763545-21763564 | Msa0982120:intron | 20.0% |
| !! | ATTGCATATTTCATAAATTC+AGG | - | chr6_4:21763586-21763605 | None:intergenic | 20.0% |
| !! | AGAATAAATAAGATAGAGAA+AGG | - | chr6_4:21763717-21763736 | None:intergenic | 20.0% |
| !!! | TCATTGTCATGTAAATTTTA+AGG | + | chr6_4:21763793-21763812 | Msa0982120:intron | 20.0% |
| !! | AGATAATAAACATCATCATT+AGG | - | chr6_4:21763859-21763878 | None:intergenic | 20.0% |
| !!! | GCATTTTCTCAAATTATTAT+TGG | - | chr6_4:21764003-21764022 | None:intergenic | 20.0% |
| !!! | TAAAAAGATTAATTTTGGAG+TGG | - | chr6_4:21764136-21764155 | None:intergenic | 20.0% |
| !! | TTTCTAAACATGAGAATTAT+TGG | + | chr6_4:21764186-21764205 | Msa0982120:intron | 20.0% |
| !!! | TTTCTTCAATGTTGTTTATA+AGG | - | chr6_4:21765126-21765145 | None:intergenic | 20.0% |
| !! | ACGAATATTAATTATCACAT+AGG | - | chr6_4:21765793-21765812 | None:intergenic | 20.0% |
| ! | AATCAAAATTGAAGGAAAGA+AGG | - | chr6_4:21763419-21763438 | None:intergenic | 25.0% |
| ! | TTCATAAATTCAGGTACTTT+GGG | - | chr6_4:21763577-21763596 | None:intergenic | 25.0% |
| ! | TTTCATAAATTCAGGTACTT+TGG | - | chr6_4:21763578-21763597 | None:intergenic | 25.0% |
| !! | TCATAATTTGTGAGAATTAC+AGG | - | chr6_4:21763624-21763643 | None:intergenic | 25.0% |
| !! | TTTATTCCTTGTTTATAGCT+TGG | + | chr6_4:21763646-21763665 | Msa0982120:intron | 25.0% |
| ! | AAACTTTAAACTCTCATTCT+AGG | - | chr6_4:21763753-21763772 | None:intergenic | 25.0% |
| ! | ATATTGATACAAATCTTCTG+AGG | - | chr6_4:21763923-21763942 | None:intergenic | 25.0% |
| ! | ATAAACCAAGTTCAAGAAAA+GGG | + | chr6_4:21764336-21764355 | Msa0982120:CDS | 25.0% |
| ! | ATTCACTAGTTATAATTGCA+GGG | - | chr6_4:21764553-21764572 | None:intergenic | 25.0% |
| ! | AATTCACTAGTTATAATTGC+AGG | - | chr6_4:21764554-21764573 | None:intergenic | 25.0% |
| ! | TGCAATTATAACTAGTGAAT+TGG | + | chr6_4:21764553-21764572 | Msa0982120:CDS | 25.0% |
| ! | TTTAATCTGTTCACAAAGTT+GGG | - | chr6_4:21764963-21764982 | None:intergenic | 25.0% |
| !! | TTTTCATCATTTCCATCAAT+TGG | - | chr6_4:21765013-21765032 | None:intergenic | 25.0% |
| !! | AGTTCAAATTTTCTGTCAAT+GGG | - | chr6_4:21765156-21765175 | None:intergenic | 25.0% |
| ! | GATTTATGAAAGCTTCAAAA+TGG | - | chr6_4:21765237-21765256 | None:intergenic | 25.0% |
| !!! | TTTTGAAGCTTTCATAAATC+AGG | + | chr6_4:21765237-21765256 | Msa0982120:CDS | 25.0% |
| ! | AAATACAATTCTCAAAGTCT+TGG | - | chr6_4:21765270-21765289 | None:intergenic | 25.0% |
| !!! | AGGGTTTTATGTTAAAGATA+GGG | + | chr6_4:21765681-21765700 | Msa0982120:CDS | 25.0% |
| !! | ATGTTAAAGATAGGGTATTA+AGG | + | chr6_4:21765689-21765708 | Msa0982120:CDS | 25.0% |
| ! | ACATGTTTCCTAGTTTATTT+AGG | - | chr6_4:21765746-21765765 | None:intergenic | 25.0% |
| AACAGAGAAACAGAACAAAA+TGG | - | chr6_4:21763143-21763162 | None:intergenic | 30.0% | |
| ! | GTTTTCAAAGACAACAACAA+TGG | + | chr6_4:21763202-21763221 | Msa0982120:CDS | 30.0% |
| AACTACAAGACAGGAAATTA+AGG | + | chr6_4:21763234-21763253 | Msa0982120:CDS | 30.0% | |
| TTTAAACTCTCATTCTAGGT+TGG | - | chr6_4:21763749-21763768 | None:intergenic | 30.0% | |
| CTGAGGACAATTATAAAGTT+GGG | - | chr6_4:21763906-21763925 | None:intergenic | 30.0% | |
| TCTGAGGACAATTATAAAGT+TGG | - | chr6_4:21763907-21763926 | None:intergenic | 30.0% | |
| TTAAATGTAACCATGTGTGT+TGG | + | chr6_4:21764028-21764047 | Msa0982120:intron | 30.0% | |
| !!! | TTAATTTTGGAGTGGAAGTT+GGG | - | chr6_4:21764128-21764147 | None:intergenic | 30.0% |
| !!! | ATTAATTTTGGAGTGGAAGT+TGG | - | chr6_4:21764129-21764148 | None:intergenic | 30.0% |
| CCTAACAATATCTGAAAGTT+GGG | + | chr6_4:21764262-21764281 | Msa0982120:CDS | 30.0% | |
| AAACTGGTGTACAAGATTAT+AGG | + | chr6_4:21764312-21764331 | Msa0982120:CDS | 30.0% | |
| AACTGGTGTACAAGATTATA+GGG | + | chr6_4:21764313-21764332 | Msa0982120:CDS | 30.0% | |
| GATAAACCAAGTTCAAGAAA+AGG | + | chr6_4:21764335-21764354 | Msa0982120:CDS | 30.0% | |
| TAAACCAAGTTCAAGAAAAG+GGG | + | chr6_4:21764337-21764356 | Msa0982120:CDS | 30.0% | |
| TAAGAGAAGAAACAGTTTAG+AGG | + | chr6_4:21764493-21764512 | Msa0982120:CDS | 30.0% | |
| CATAGGAATAATGTCAATTG+AGG | + | chr6_4:21764763-21764782 | Msa0982120:CDS | 30.0% | |
| GTTTAATCTGTTCACAAAGT+TGG | - | chr6_4:21764964-21764983 | None:intergenic | 30.0% | |
| AATGAGGAAGTAATGATAGA+GGG | + | chr6_4:21765046-21765065 | Msa0982120:CDS | 30.0% | |
| ! | GAGTTCAAATTTTCTGTCAA+TGG | - | chr6_4:21765157-21765176 | None:intergenic | 30.0% |
| TCTAAATTCCAAGTACTCAA+AGG | + | chr6_4:21765201-21765220 | Msa0982120:CDS | 30.0% | |
| GTATTACCACTACTCTAAAT+TGG | + | chr6_4:21765455-21765474 | Msa0982120:CDS | 30.0% | |
| TTAAGATCATGGTTAATCCA+GGG | + | chr6_4:21765662-21765681 | Msa0982120:CDS | 30.0% | |
| CTATCTTTAACATAAAACCC+TGG | - | chr6_4:21765682-21765701 | None:intergenic | 30.0% | |
| !! | CAGGGTTTTATGTTAAAGAT+AGG | + | chr6_4:21765680-21765699 | Msa0982120:CDS | 30.0% |
| AAACTCAGAAACTACAAGAC+AGG | + | chr6_4:21763225-21763244 | Msa0982120:CDS | 35.0% | |
| AGGAGATAGAAACTTTGCAT+TGG | - | chr6_4:21763326-21763345 | None:intergenic | 35.0% | |
| ! | TTCCTTGTTTATAGCTTGGT+TGG | + | chr6_4:21763650-21763669 | Msa0982120:intron | 35.0% |
| TACCAACCAAGCTATAAACA+AGG | - | chr6_4:21763655-21763674 | None:intergenic | 35.0% | |
| GAATTCTGAACTGAATCATG+TGG | + | chr6_4:21763827-21763846 | Msa0982120:intron | 35.0% | |
| ! | ACACCTTCAATCTAAAGTGT+CGG | + | chr6_4:21764088-21764107 | Msa0982120:intron | 35.0% |
| !!! | TAATTTTGGAGTGGAAGTTG+GGG | - | chr6_4:21764127-21764146 | None:intergenic | 35.0% |
| ATATTGTTAGGCATTTCGTG+TGG | - | chr6_4:21764253-21764272 | None:intergenic | 35.0% | |
| GCCTAACAATATCTGAAAGT+TGG | + | chr6_4:21764261-21764280 | Msa0982120:CDS | 35.0% | |
| CCCAACTTTCAGATATTGTT+AGG | - | chr6_4:21764265-21764284 | None:intergenic | 35.0% | |
| ATATCTGAAAGTTGGGATGA+AGG | + | chr6_4:21764269-21764288 | Msa0982120:CDS | 35.0% | |
| ACATATGTGAGATTCTAGGT+TGG | - | chr6_4:21764384-21764403 | None:intergenic | 35.0% | |
| CAGAACATATGTGAGATTCT+AGG | - | chr6_4:21764388-21764407 | None:intergenic | 35.0% | |
| ! | TATATGATTTGCACAAGAGC+CGG | - | chr6_4:21764432-21764451 | None:intergenic | 35.0% |
| ! | AGTCTGAAACGAAAAGCAAA+GGG | + | chr6_4:21764642-21764661 | Msa0982120:CDS | 35.0% |
| TTATGCTTCTTCTTTAACCG+AGG | - | chr6_4:21764686-21764705 | None:intergenic | 35.0% | |
| TTAGTAATCTTCCTCAGAGA+GGG | + | chr6_4:21764984-21765003 | Msa0982120:CDS | 35.0% | |
| AAATTCAATGCCTGTGAATG+AGG | + | chr6_4:21765030-21765049 | Msa0982120:CDS | 35.0% | |
| ATCATTACTTCCTCATTCAC+AGG | - | chr6_4:21765043-21765062 | None:intergenic | 35.0% | |
| GAATGAGGAAGTAATGATAG+AGG | + | chr6_4:21765045-21765064 | Msa0982120:CDS | 35.0% | |
| ! | CATGACGGTCTATGAATTTT+GGG | - | chr6_4:21765309-21765328 | None:intergenic | 35.0% |
| ! | TCATGACGGTCTATGAATTT+TGG | - | chr6_4:21765310-21765329 | None:intergenic | 35.0% |
| ! | TTTTCTTTCAACCCACCATT+GGG | + | chr6_4:21765556-21765575 | Msa0982120:CDS | 35.0% |
| AACCTTTGATCATCGCTATA+TGG | + | chr6_4:21765603-21765622 | Msa0982120:CDS | 35.0% | |
| TTCCATATAGCGATGATCAA+AGG | - | chr6_4:21765608-21765627 | None:intergenic | 35.0% | |
| ATATGGAAGATATGAGTCCT+AGG | + | chr6_4:21765620-21765639 | Msa0982120:CDS | 35.0% | |
| TCCAAGCAAAGTTAAGATCA+TGG | + | chr6_4:21765651-21765670 | Msa0982120:CDS | 35.0% | |
| ACCATGATCTTAACTTTGCT+TGG | - | chr6_4:21765655-21765674 | None:intergenic | 35.0% | |
| GTTAAGATCATGGTTAATCC+AGG | + | chr6_4:21765661-21765680 | Msa0982120:CDS | 35.0% | |
| ! | AGATAGGGTATTAAGGTGTA+AGG | + | chr6_4:21765696-21765715 | Msa0982120:CDS | 35.0% |
| ATCCACAGCCTAAATAAACT+AGG | + | chr6_4:21765735-21765754 | Msa0982120:exon | 35.0% | |
| TTCCTAGTTTATTTAGGCTG+TGG | - | chr6_4:21765740-21765759 | None:intergenic | 35.0% | |
| CTCTGTTCTGTTCTGTTTCA+TGG | + | chr6_4:21763156-21763175 | Msa0982120:exon | 40.0% | |
| TTCTCACAGGTGTGAAAACA+GGG | - | chr6_4:21763393-21763412 | None:intergenic | 40.0% | |
| ATTCTCACAGGTGTGAAAAC+AGG | - | chr6_4:21763394-21763413 | None:intergenic | 40.0% | |
| GGAAAGAAGGAAATTCTCAC+AGG | - | chr6_4:21763406-21763425 | None:intergenic | 40.0% | |
| AGACCGACACTTTAGATTGA+AGG | - | chr6_4:21764094-21764113 | None:intergenic | 40.0% | |
| TCTGGTTGTACGATACAAGT+GGG | - | chr6_4:21764229-21764248 | None:intergenic | 40.0% | |
| ! | TTCTGGTTGTACGATACAAG+TGG | - | chr6_4:21764230-21764249 | None:intergenic | 40.0% |
| TCAGGAAACAGCATAGAAAC+TGG | + | chr6_4:21764296-21764315 | Msa0982120:CDS | 40.0% | |
| ! | AGTACCCCTTTTCTTGAACT+TGG | - | chr6_4:21764344-21764363 | None:intergenic | 40.0% |
| !! | TCTAGGTTGGTAAAACCACA+AGG | - | chr6_4:21764371-21764390 | None:intergenic | 40.0% |
| CTTACTCCTGTAGCTTTCAT+TGG | - | chr6_4:21764477-21764496 | None:intergenic | 40.0% | |
| TGCAGGGTTACATTTATTGC+AGG | - | chr6_4:21764537-21764556 | None:intergenic | 40.0% | |
| ! | CAATATTGTTGTTCCTGCCA+CGG | + | chr6_4:21764601-21764620 | Msa0982120:CDS | 40.0% |
| ! | CAGTCTGAAACGAAAAGCAA+AGG | + | chr6_4:21764641-21764660 | Msa0982120:CDS | 40.0% |
| ! | GTCTGAAACGAAAAGCAAAG+GGG | + | chr6_4:21764643-21764662 | Msa0982120:CDS | 40.0% |
| ! | TGATTTCGTGGTTGTTTCCT+CGG | + | chr6_4:21764666-21764685 | Msa0982120:CDS | 40.0% |
| AGAATCTGAGGATGTTTCTC+AGG | + | chr6_4:21764730-21764749 | Msa0982120:CDS | 40.0% | |
| !! | TTCTGAGATGCGATGTTCAT+TGG | + | chr6_4:21764844-21764863 | Msa0982120:CDS | 40.0% |
| ! | TCTGAGATGCGATGTTCATT+GGG | + | chr6_4:21764845-21764864 | Msa0982120:CDS | 40.0% |
| CTTAGTAATCTTCCTCAGAG+AGG | + | chr6_4:21764983-21765002 | Msa0982120:CDS | 40.0% | |
| !! | TGGAATGAGGTACTGAGAAA+GGG | + | chr6_4:21765379-21765398 | Msa0982120:CDS | 40.0% |
| ! | CCTGATCCAATTTAGAGTAG+TGG | - | chr6_4:21765464-21765483 | None:intergenic | 40.0% |
| CCACTACTCTAAATTGGATC+AGG | + | chr6_4:21765461-21765480 | Msa0982120:CDS | 40.0% | |
| CAGCTACAAAGAAAGCTTGA+AGG | - | chr6_4:21765504-21765523 | None:intergenic | 40.0% | |
| TTGTAGCTGCAAAATGCATG+TGG | + | chr6_4:21765515-21765534 | Msa0982120:CDS | 40.0% | |
| !! | CAATGGTGGGTTGAAAGAAA+AGG | - | chr6_4:21765557-21765576 | None:intergenic | 40.0% |
| ! | CTTTTCTTTCAACCCACCAT+TGG | + | chr6_4:21765555-21765574 | Msa0982120:CDS | 40.0% |
| TCAACCCTTAAAACTCCCAA+TGG | - | chr6_4:21765574-21765593 | None:intergenic | 40.0% | |
| ! | TAGTTCCACAGCTTTGGCTA+TGG | - | chr6_4:21763263-21763282 | None:intergenic | 45.0% |
| AGCTCTTAGTTCCACAGCTT+TGG | - | chr6_4:21763269-21763288 | None:intergenic | 45.0% | |
| !! | CTTCATGCTGCTTTAATGCG+AGG | + | chr6_4:21763289-21763308 | Msa0982120:CDS | 45.0% |
| AGAAACAGAGCGTGAAACAG+GGG | - | chr6_4:21763350-21763369 | None:intergenic | 45.0% | |
| GAGAAACAGAGCGTGAAACA+GGG | - | chr6_4:21763351-21763370 | None:intergenic | 45.0% | |
| TGAGAAACAGAGCGTGAAAC+AGG | - | chr6_4:21763352-21763371 | None:intergenic | 45.0% | |
| GAAGAGCAGACACAAAACAC+CGG | + | chr6_4:21763955-21763974 | Msa0982120:intron | 45.0% | |
| TGACGAGTCAGTATTGTGTC+CGG | - | chr6_4:21763977-21763996 | None:intergenic | 45.0% | |
| AGACACAACACCAACACACA+TGG | - | chr6_4:21764041-21764060 | None:intergenic | 45.0% | |
| AGTGGAAGTTGGGGAATTAC+AGG | - | chr6_4:21764118-21764137 | None:intergenic | 45.0% | |
| TTAGGCATTTCGTGTGGTTC+TGG | - | chr6_4:21764247-21764266 | None:intergenic | 45.0% | |
| AGTTGGGATGAAGGAGAATC+AGG | + | chr6_4:21764278-21764297 | Msa0982120:CDS | 45.0% | |
| !! | AAAGGGGTACTACTACCTTG+TGG | + | chr6_4:21764353-21764372 | Msa0982120:CDS | 45.0% |
| GATGACACCAAATCCGTAAC+CGG | + | chr6_4:21764410-21764429 | Msa0982120:CDS | 45.0% | |
| ATTTGCACAAGAGCCGGTTA+CGG | - | chr6_4:21764426-21764445 | None:intergenic | 45.0% | |
| CACCTACCAATGAAAGCTAC+AGG | + | chr6_4:21764468-21764487 | Msa0982120:CDS | 45.0% | |
| CTCCTGTAGCTTTCATTGGT+AGG | - | chr6_4:21764473-21764492 | None:intergenic | 45.0% | |
| ! | CTAGTGAATTGGAGAGTGCA+AGG | + | chr6_4:21764564-21764583 | Msa0982120:CDS | 45.0% |
| CGTGGCAGGAACAACAATAT+TGG | - | chr6_4:21764603-21764622 | None:intergenic | 45.0% | |
| TTCAGACTGAAACGACGAGT+GGG | - | chr6_4:21764630-21764649 | None:intergenic | 45.0% | |
| TTTCAGACTGAAACGACGAG+TGG | - | chr6_4:21764631-21764650 | None:intergenic | 45.0% | |
| AAAGCAAAGGGGTGATTTCG+TGG | + | chr6_4:21764654-21764673 | Msa0982120:CDS | 45.0% | |
| TCCAAGTAGAGCAGAATCTG+AGG | + | chr6_4:21764718-21764737 | Msa0982120:CDS | 45.0% | |
| TCCTCAGATTCTGCTCTACT+TGG | - | chr6_4:21764722-21764741 | None:intergenic | 45.0% | |
| GGATGTTTCTCAGGTTCTCA+AGG | + | chr6_4:21764739-21764758 | Msa0982120:CDS | 45.0% | |
| TCTCAGGTTCTCAAGGACAT+AGG | + | chr6_4:21764746-21764765 | Msa0982120:CDS | 45.0% | |
| ! | GAGACAGAAGATGGAGTACT+TGG | + | chr6_4:21764874-21764893 | Msa0982120:CDS | 45.0% |
| ! | TCAATTGGTTTCCCTCTCTG+AGG | - | chr6_4:21764998-21765017 | None:intergenic | 45.0% |
| CAGAGAGGGAAACCAATTGA+TGG | + | chr6_4:21764998-21765017 | Msa0982120:CDS | 45.0% | |
| CAGAACTGCCTTTGAGTACT+TGG | - | chr6_4:21765212-21765231 | None:intergenic | 45.0% | |
| ATGACGAGAATTTCGCTTGG+CGG | - | chr6_4:21765336-21765355 | None:intergenic | 45.0% | |
| CGAATGACGAGAATTTCGCT+TGG | - | chr6_4:21765339-21765358 | None:intergenic | 45.0% | |
| TCTCGTCATTCGTTGCTCTT+AGG | + | chr6_4:21765347-21765366 | Msa0982120:CDS | 45.0% | |
| TTGCTCTTAGGAACTTGAGC+TGG | + | chr6_4:21765359-21765378 | Msa0982120:CDS | 45.0% | |
| TAGGAACTTGAGCTGGAATG+AGG | + | chr6_4:21765366-21765385 | Msa0982120:CDS | 45.0% | |
| !! | CTGGAATGAGGTACTGAGAA+AGG | + | chr6_4:21765378-21765397 | Msa0982120:CDS | 45.0% |
| CTCTAAATTGGATCAGGCCT+TGG | + | chr6_4:21765467-21765486 | Msa0982120:CDS | 45.0% | |
| ! | ACCCACCATTGGGAGTTTTA+AGG | + | chr6_4:21765566-21765585 | Msa0982120:CDS | 45.0% |
| CCCTTAAAACTCCCAATGGT+GGG | - | chr6_4:21765570-21765589 | None:intergenic | 45.0% | |
| !! | CCCACCATTGGGAGTTTTAA+GGG | + | chr6_4:21765567-21765586 | Msa0982120:CDS | 45.0% |
| ACCCTTAAAACTCCCAATGG+TGG | - | chr6_4:21765571-21765590 | None:intergenic | 45.0% | |
| AGATATGAGTCCTAGGTCAC+AGG | + | chr6_4:21765627-21765646 | Msa0982120:CDS | 45.0% | |
| GATATGAGTCCTAGGTCACA+GGG | + | chr6_4:21765628-21765647 | Msa0982120:CDS | 45.0% | |
| TAAGGTGTAAGGTCCTTTGC+AGG | + | chr6_4:21765707-21765726 | Msa0982120:CDS | 45.0% | |
| CTGTGGATTTGTACCTGCAA+AGG | - | chr6_4:21765723-21765742 | None:intergenic | 45.0% | |
| !!! | AAAATTAAAAAGATTAATTT+TGG | - | chr6_4:21764141-21764160 | None:intergenic | 5.0% |
| !!! | AATTTTTTTTTTTATTTTGA+TGG | + | chr6_4:21764155-21764174 | Msa0982120:intron | 5.0% |
| ACAAGAGCCGGTTACGGATT+TGG | - | chr6_4:21764420-21764439 | None:intergenic | 50.0% | |
| AGCGAACGAGAATAGAGACG+TGG | + | chr6_4:21764808-21764827 | Msa0982120:CDS | 50.0% | |
| GGGAGAGTTGAGACAGAAGA+TGG | + | chr6_4:21764865-21764884 | Msa0982120:CDS | 50.0% | |
| AAAGCTTGAAGGAGCTGCTC+AGG | - | chr6_4:21765493-21765512 | None:intergenic | 50.0% | |
| GGTTGCCATAGCCAAAGCTG+TGG | + | chr6_4:21763255-21763274 | Msa0982120:CDS | 55.0% | |
| ACAGAGCGTGAAACAGGGGA+AGG | - | chr6_4:21763346-21763365 | None:intergenic | 55.0% | |
| AAACGACGAGTGGGAATCCG+TGG | - | chr6_4:21764621-21764640 | None:intergenic | 55.0% | |
| CGAGAATAGAGACGTGGCGT+TGG | + | chr6_4:21764814-21764833 | Msa0982120:CDS | 55.0% | |
| ! | GAATAGAGACGTGGCGTTGG+TGG | + | chr6_4:21764817-21764836 | Msa0982120:CDS | 55.0% |
| GAAGCAATCCATGCAGACGC+AGG | + | chr6_4:21764928-21764947 | Msa0982120:CDS | 55.0% | |
| AATCCATGCAGACGCAGGCA+AGG | + | chr6_4:21764933-21764952 | Msa0982120:CDS | 55.0% | |
| ATCCATGCAGACGCAGGCAA+GGG | + | chr6_4:21764934-21764953 | Msa0982120:CDS | 55.0% | |
| TCGCTTGGCGGTCTTCATGA+CGG | - | chr6_4:21765324-21765343 | None:intergenic | 55.0% | |
| TTGCTTGGACCCTGTGACCT+AGG | - | chr6_4:21765640-21765659 | None:intergenic | 55.0% | |
| GCCTCACACACGTCAGACGT+CGG | + | chr6_4:21764063-21764082 | Msa0982120:intron | 60.0% | |
| TCCGACGTCTGACGTGTGTG+AGG | - | chr6_4:21764067-21764086 | None:intergenic | 60.0% | |
| ATCCCTTGCCTGCGTCTGCA+TGG | - | chr6_4:21764939-21764958 | None:intergenic | 60.0% | |
| TGAAGGAGCTGCTCAGGCCA+AGG | - | chr6_4:21765487-21765506 | None:intergenic | 60.0% | |
| GACGAGTGGGAATCCGTGGC+AGG | - | chr6_4:21764617-21764636 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 21763100 | 21765887 | 21763100 | ID=Msa0982120;Name=Msa0982120 |
| chr6_4 | mRNA | 21763100 | 21765887 | 21763100 | ID=Msa0982120-mRNA-1;Parent=Msa0982120;Name=Msa0982120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=75|1|1|1|1|1|2|140|588 |
| chr6_4 | exon | 21763100 | 21763405 | 21763100 | ID=Msa0982120-mRNA-1:exon:6745;Parent=Msa0982120-mRNA-1 |
| chr6_4 | exon | 21764212 | 21765887 | 21764212 | ID=Msa0982120-mRNA-1:exon:6746;Parent=Msa0982120-mRNA-1 |
| chr6_4 | five_prime_UTR | 21763100 | 21763174 | 21763100 | ID=Msa0982120-mRNA-1:five_prime_utr;Parent=Msa0982120-mRNA-1 |
| chr6_4 | CDS | 21763175 | 21763405 | 21763175 | ID=Msa0982120-mRNA-1:cds;Parent=Msa0982120-mRNA-1 |
| chr6_4 | CDS | 21764212 | 21765747 | 21764212 | ID=Msa0982120-mRNA-1:cds;Parent=Msa0982120-mRNA-1 |
| chr6_4 | three_prime_UTR | 21765748 | 21765887 | 21765748 | ID=Msa0982120-mRNA-1:three_prime_utr;Parent=Msa0982120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
