AlfalfaGEDB | Msa0766030

M. sativa cultivar zhongmu-4 / Msa0766030

KEGG: K21374
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0080043 GO:0080044
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766030	XP_003618640.1	88.542	480	55	0	1	480	1	480	0.0	864

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766030	sp\|F8WKW1\|UGT2_GARJA	56.394	477	202	4	7	480	8	481	0.0	549

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766030	G7KLV2	88.542	480	55	0	1	480	1	480	0.0	864

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0766030	0.811807	5.818681e-51	-8.615850e-47
Msa0000220	Msa0766030	0.898215	6.602169e-77	-8.615850e-47
Msa0001460	Msa0766030	0.801761	7.732129e-49	-8.615850e-47
Msa0004340	Msa0766030	0.803703	3.072252e-49	-8.615850e-47
Msa0005160	Msa0766030	0.811152	8.077639e-51	-8.615850e-47
Msa0005190	Msa0766030	0.815499	8.960062e-52	-8.615850e-47
Msa0005690	Msa0766030	0.825741	3.972769e-54	-8.615850e-47
Msa0006050	Msa0766030	0.819390	1.190878e-52	-8.615850e-47
Msa0008250	Msa0766030	0.821368	4.190132e-53	-8.615850e-47
Msa0008850	Msa0766030	0.825873	3.695642e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0766030	MtrunA17_Chr6g0454151	88.542	480	55	0	1	480	1	480	864
Msa0766030	MtrunA17_Chr6g0454141	81.743	482	86	1	1	480	1	482	812
Msa0766030	MtrunA17_Chr6g0452771	81.535	482	87	1	1	480	1	482	803
Msa0766030	MtrunA17_Chr6g0454261	78.631	482	101	1	1	480	1	482	785
Msa0766030	MtrunA17_Chr6g0453961	73.706	483	124	2	1	480	10	492	744
Msa0766030	MtrunA17_Chr6g0454331	72.917	480	126	2	5	480	2	481	742
Msa0766030	MtrunA17_Chr6g0454191	74.741	483	119	2	1	480	1	483	737
Msa0766030	MtrunA17_Chr6g0454401	73.292	483	126	2	1	480	1	483	732
Msa0766030	MtrunA17_Chr6g0454291	74.268	478	121	1	5	480	2	479	726
Msa0766030	MtrunA17_Chr6g0454181	71.992	482	133	1	1	480	1	482	722

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0766030	AT1G22400.1	52.192	479	218	6	7	479	10	483	7.95e-180	513
Msa0766030	AT1G22340.1	51.458	480	222	6	7	480	10	484	5.32e-177	506
Msa0766030	AT1G22360.1	51.240	484	226	5	1	479	1	479	1.69e-175	501
Msa0766030	AT1G22380.1	50.313	479	228	5	6	479	9	482	7.97e-172	493
Msa0766030	AT1G22370.2	52.510	478	212	6	7	479	10	477	7.97e-169	484
Msa0766030	AT1G22360.2	49.587	484	222	6	1	479	1	467	5.86e-166	477
Msa0766030	AT1G78270.1	48.333	480	236	7	5	478	8	481	3.90e-160	463
Msa0766030	AT1G22370.1	52.824	301	137	3	184	479	7	307	1.62e-103	311
Msa0766030	AT5G59590.1	35.802	486	266	13	1	477	1	449	6.17e-91	284
Msa0766030	AT5G59580.1	35.537	484	261	14	8	481	7	449	4.96e-86	272

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Find 106 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGCTAATGGACCAA+TGG	0.589223	5_2:-27422526	None:intergenic
AAAATCAGTTAAACCATCAA+AGG	0.541491	5_2:-27421847	None:intergenic
AAACGATTGCTCAAATCAAG+AGG	0.613843	5_2:+27421816	Msa0766030:CDS
AAACTAAACAAGTAACTGGA+GGG	0.637432	5_2:-27422028	None:intergenic
AAATTGTTAGAGTTTGCTTG+GGG	0.637062	5_2:+27422696	Msa0766030:CDS
AAGATACTAAATGTCTCGAG+TGG	0.646859	5_2:+27422604	Msa0766030:CDS
AATGGAGTTAACACTGCATG+TGG	0.683935	5_2:-27421696	None:intergenic
AATGGTGTGCTACCACTCAA+AGG	0.604381	5_2:+27422173	Msa0766030:CDS
ACATAATGATTACCTTTGAG+TGG	0.621915	5_2:-27422185	None:intergenic
ACATCTCCATCACCATCCGT+CGG	0.665024	5_2:-27421900	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTCAACATTGGATTGATA+TGG	-	chr5_2:27421734-27421753	None:intergenic	30.0%
ATCAATCCAATGTTGAAACT+AGG	+	chr5_2:27421735-27421754	Msa0766030:CDS	30.0%
AAACTAAACAAGTAACTGGA+GGG	-	chr5_2:27422031-27422050	None:intergenic	30.0%
TCAGAAACTAAACAAGTAAC+TGG	-	chr5_2:27422035-27422054	None:intergenic	30.0%
ACATAATGATTACCTTTGAG+TGG	-	chr5_2:27422188-27422207	None:intergenic	30.0%
AGGATATTCCTGATATAATG+AGG	+	chr5_2:27422361-27422380	Msa0766030:CDS	30.0%
CATCTTTAGACTCTAATCTT+TGG	+	chr5_2:27422577-27422596	Msa0766030:CDS	30.0%
TGATTCAAAACTTTCTCTTG+TGG	-	chr5_2:27422849-27422868	None:intergenic	30.0%
CGCAAATAATTCTACTAGTA+AGG	-	chr5_2:27422977-27422996	None:intergenic	30.0%
GTAGAATTATTTGCGAAGAA+TGG	+	chr5_2:27422982-27423001	Msa0766030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	27421599	27423509	27421599	ID=Msa0766030;Name=Msa0766030
chr5_2	mRNA	27421599	27423509	27421599	ID=Msa0766030-mRNA-1;Parent=Msa0766030;Name=Msa0766030-mRNA-1;_AED=0.02;_eAED=0.02;_QI=73\|1\|1\|1\|1\|1\|2\|301\|481
chr5_2	exon	27421599	27422194	27421599	ID=Msa0766030-mRNA-1:exon:10720;Parent=Msa0766030-mRNA-1
chr5_2	exon	27422286	27423509	27422286	ID=Msa0766030-mRNA-1:exon:10721;Parent=Msa0766030-mRNA-1
chr5_2	five_prime_UTR	27421599	27421671	27421599	ID=Msa0766030-mRNA-1:five_prime_utr;Parent=Msa0766030-mRNA-1
chr5_2	CDS	27421672	27422194	27421672	ID=Msa0766030-mRNA-1:cds;Parent=Msa0766030-mRNA-1
chr5_2	CDS	27422286	27423208	27422286	ID=Msa0766030-mRNA-1:cds;Parent=Msa0766030-mRNA-1
chr5_2	three_prime_UTR	27423209	27423509	27423209	ID=Msa0766030-mRNA-1:three_prime_utr;Parent=Msa0766030-mRNA-1

Gene Sequence

>Msa0766030

ATGAGTGACTATGCAGAAAAAAAACCACATGCAGTGTTAACTCCATTTCCAGTTCAAGGCCATATCAATCCAATGTTGAAACTAGGAAAACTACTTCACCTTAGAGGCTTTCAAATAACCTTTGTTAACACTGAATACAATCACAAACGATTGCTCAAATCAAGAGGTCCAAATGCCTTTGATGGTTTAACTGATTTTACCTTTGAGACTATTCCAGATGGTTTAACTCCGACGGATGGTGATGGAGATGTTAGTCAAGACTTACGCGCTCTTTGTCTATCAATCATGAAGAATTTTCACCACTTCTTTGGTGAATTTCTTGCTAAACTTCATGACTCTGCCACTGCTGGTCTTATCCCTCCAGTTACTTGTTTAGTTTCTGATTACAACATGCCATTTACAGTAGATGCTGCTGAAGAACATGAACTTCCAATTGTTCTCTTTTCCCCATGTAGTGCATGTTACTTCTATTCTACTTTTCATATTTCTAAATTGTTTAAGAATGGTGTGCTACCACTCAAAGATGAGAGTTATCTAACAGATGGATATTTGGACGCTAAAGTTGACGCGATTCCAGGTTTGAAAAACATTAGTTTGAAGGATATTCCTGATATAATGAGGATAAAAGATCCTGATTTGATAAAATATAAAAGTCAAGAGACAGATAAATGTCATAGAGCCTCAGCCATTGTTTTCAATACTTCTAATGAACTCGAGAGTGATGCTATGAATGCTCTTAATTCTATATTTCCATCTCTATACACCATTGGTCCATTAGCTTCTTTTGTAAATCAAAGTCCACAAAATCACTTGACATCTTTAGACTCTAATCTTTGGAAAGAAGATACTAAATGTCTCGAGTGGCTTGAATCGAAAGAACCAAAATCTGTTGTTTATGTAAATTTTGGCAGCATTACTGTTATGTCTCAAGAGAAATTGTTAGAGTTTGCTTGGGGTTTGGCGAACAGCAAGAAACCTTTTTTGTGGATTATTAGGCCTGATCTTGTTATTGGTGGCTCAGAGGTGTTGTCATCTGATTTTTTGAAAGAAATTTCAGATAGAGGCCTAATAGCAAGTTGGTGTCCACAAGAGAAAGTTTTGAATCACCCTTCAATCAGTGGATTCTTGACTCATTGCGGATGGAAGTCAACCACTGAAAGTGTATGTGCTGGAGTGCCAATGTTGCGTTGGCCATTTTTTGCTGACCAACCCCTTACTAGTAGAATTATTTGCGAAGAATGGGAGATTGGGATGAAAATTGATACCAATGTAAAGAGAGAGGAGGTAGAGAAACTGATTAATGAATTGATGGTGGGAGAGAAAGGAAAGAAGATGAGGCAAAAGGCCACGGAGTTGAAGAAGAAGGCAGAGGAAGACACAAGACTCGGTGGTAGTTCATACATGAACTTGGACAAAGTGATTAAGGATGTCTTGCTTAAAATGTGA

Protein sequence

>Msa0766030

MSDYAEKKPHAVLTPFPVQGHINPMLKLGKLLHLRGFQITFVNTEYNHKRLLKSRGPNAFDGLTDFTFETIPDGLTPTDGDGDVSQDLRALCLSIMKNFHHFFGEFLAKLHDSATAGLIPPVTCLVSDYNMPFTVDAAEEHELPIVLFSPCSACYFYSTFHISKLFKNGVLPLKDESYLTDGYLDAKVDAIPGLKNISLKDIPDIMRIKDPDLIKYKSQETDKCHRASAIVFNTSNELESDAMNALNSIFPSLYTIGPLASFVNQSPQNHLTSLDSNLWKEDTKCLEWLESKEPKSVVYVNFGSITVMSQEKLLEFAWGLANSKKPFLWIIRPDLVIGGSEVLSSDFLKEISDRGLIASWCPQEKVLNHPSISGFLTHCGWKSTTESVCAGVPMLRWPFFADQPLTSRIICEEWEIGMKIDTNVKREEVEKLINELMVGEKGKKMRQKATELKKKAEEDTRLGGSSYMNLDKVIKDVLLKM*