AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0871470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871470 MtrunA17_Chr6g0452771 90.026 381 24 1 8 374 33 413 0.0 702
Msa0871470 MtrunA17_Chr6g0454141 78.093 388 71 1 1 374 26 413 0.0 624
Msa0871470 MtrunA17_Chr6g0454261 76.031 388 79 1 1 374 26 413 0.0 612
Msa0871470 MtrunA17_Chr6g0453961 74.485 388 84 2 2 374 36 423 0.0 600
Msa0871470 MtrunA17_Chr6g0454191 74.742 388 83 1 2 374 27 414 0.0 584
Msa0871470 MtrunA17_Chr6g0454151 73.879 379 83 2 10 374 35 411 0.0 570
Msa0871470 MtrunA17_Chr6g0454181 71.576 387 96 1 2 374 27 413 0.0 570
Msa0871470 MtrunA17_Chr6g0454331 70.000 390 101 1 1 374 23 412 0.0 563
Msa0871470 MtrunA17_Chr6g0454121 72.296 379 90 2 10 374 35 412 0.0 563
Msa0871470 MtrunA17_Chr6g0454131 72.559 379 89 2 10 374 35 412 0.0 563
Msa0871470 MtrunA17_Chr8g0359821 71.762 386 97 1 1 374 26 411 0.0 560
Msa0871470 MtrunA17_Chr6g0454401 71.134 388 97 1 2 374 27 414 0.0 558
Msa0871470 MtrunA17_Chr6g0454361 71.504 379 94 1 10 374 36 414 0.0 553
Msa0871470 MtrunA17_Chr6g0453951 69.509 387 104 1 2 374 74 460 0.0 550
Msa0871470 MtrunA17_Chr6g0454291 69.657 379 101 1 10 374 32 410 0.0 540
Msa0871470 MtrunA17_Chr6g0454201 70.449 379 98 1 10 374 36 414 0.0 540
Msa0871470 MtrunA17_Chr6g0454211 69.393 379 102 1 10 374 322 700 0.0 539
Msa0871470 MtrunA17_Chr6g0454211 71.375 269 46 2 92 360 1 238 2.11e-127 384
Msa0871470 MtrunA17_Chr3g0078841 68.299 388 105 3 2 374 27 411 0.0 535
Msa0871470 MtrunA17_Chr6g0454351 67.442 387 95 2 2 374 29 398 0.0 534
Msa0871470 MtrunA17_Chr6g0454301 67.183 387 109 3 2 373 280 663 0.0 529
Msa0871470 MtrunA17_Chr6g0454301 82.209 163 29 0 212 374 1 163 7.58e-91 288
Msa0871470 MtrunA17_Chr5g0423981 68.299 388 72 3 2 374 27 378 0.0 526
Msa0871470 MtrunA17_Chr6g0454251 67.024 373 109 1 1 359 23 395 0.0 523
Msa0871470 MtrunA17_Chr6g0454341 67.268 388 109 3 2 374 27 411 0.0 522
Msa0871470 MtrunA17_Chr6g0454321 67.095 389 110 3 1 374 26 411 0.0 520
Msa0871470 MtrunA17_Chr6g0454321 61.386 101 25 1 1 87 520 620 6.37e-32 127
Msa0871470 MtrunA17_Chr8g0336331 66.408 387 113 3 2 374 27 410 0.0 518
Msa0871470 MtrunA17_Chr7g0217881 67.196 378 92 2 11 374 36 395 0.0 512
Msa0871470 MtrunA17_Chr5g0426431 54.522 387 160 4 1 374 28 411 4.31e-148 427
Msa0871470 MtrunA17_Chr3g0092641 54.264 387 161 4 1 374 28 411 1.62e-145 421
Msa0871470 MtrunA17_Chr2g0278711 51.538 390 166 4 1 374 27 409 2.93e-138 402
Msa0871470 MtrunA17_Chr6g0454171 67.247 287 46 3 92 374 1 243 1.76e-127 369
Msa0871470 MtrunA17_Chr6g0454271 73.182 220 59 0 155 374 1 220 2.59e-119 347
Msa0871470 MtrunA17_Chr4g0050341 47.315 391 188 5 1 374 35 424 1.08e-116 348
Msa0871470 MtrunA17_Chr8g0355011 57.655 307 87 2 68 374 32 295 3.15e-116 342
Msa0871470 MtrunA17_Chr3g0118771 44.987 389 196 4 1 374 37 422 9.68e-114 340
Msa0871470 MtrunA17_Chr6g0453981 69.697 231 70 0 92 322 1 231 1.47e-113 330
Msa0871470 MtrunA17_Chr3g0118661 45.714 385 196 3 1 373 29 412 8.26e-113 337
Msa0871470 MtrunA17_Chr3g0118671 43.959 389 200 4 1 374 22 407 6.49e-112 335
Msa0871470 MtrunA17_Chr3g0118711 43.959 389 200 4 1 374 29 414 6.62e-111 332
Msa0871470 MtrunA17_Chr3g0118701 43.188 389 203 5 1 374 31 416 5.05e-110 330
Msa0871470 MtrunA17_Chr3g0118691 42.931 389 204 4 1 374 31 416 3.02e-108 326
Msa0871470 MtrunA17_Chr5g0426401 59.671 243 96 1 134 374 2 244 1.70e-102 305
Msa0871470 MtrunA17_Chr6g0453941 67.580 219 70 1 93 310 54 272 1.32e-98 294
Msa0871470 MtrunA17_Chr3g0118751 42.010 388 180 6 1 374 22 378 1.46e-95 292
Msa0871470 MtrunA17_Chr6g0454221 82.822 163 27 1 212 373 1 163 6.02e-92 278
Msa0871470 MtrunA17_Chr6g0454111 75.776 161 38 1 131 290 22 182 7.82e-83 250
Msa0871470 MtrunA17_Chr8g0336271 56.109 221 81 2 2 209 27 244 4.12e-80 247
Msa0871470 MtrunA17_Chr6g0454231 57.477 214 74 2 2 201 267 477 1.24e-74 239
Msa0871470 MtrunA17_Chr6g0454231 58.289 187 40 2 188 374 3 151 3.96e-61 204
Msa0871470 MtrunA17_Chr3g0118721 47.982 223 113 2 155 374 1 223 7.04e-73 229
Msa0871470 MtrunA17_Chr6g0454281 65.294 170 45 1 1 156 26 195 5.15e-71 221
Msa0871470 MtrunA17_Chr5g0412111 35.142 387 225 8 1 373 21 395 4.07e-70 227
Msa0871470 MtrunA17_Chr5g0412131 35.825 388 222 9 1 373 28 403 1.98e-67 220
Msa0871470 MtrunA17_Chr3g0112771 35.584 385 204 11 1 371 28 382 6.23e-67 218
Msa0871470 MtrunA17_Chr5g0412101 34.447 389 227 8 1 373 28 404 1.63e-66 218
Msa0871470 MtrunA17_Chr3g0112761 33.850 387 213 11 1 373 24 381 1.55e-60 202
Msa0871470 MtrunA17_Chr8g0336261 83.654 104 17 0 271 374 1 104 2.21e-59 188
Msa0871470 MtrunA17_Chr6g0454381 63.380 142 52 0 92 233 1 142 3.41e-58 186
Msa0871470 MtrunA17_Chr4g0032331 31.714 391 219 11 1 373 24 384 2.25e-55 188
Msa0871470 MtrunA17_Chr6g0454371 80.583 103 20 0 271 373 1 103 4.67e-55 179
Msa0871470 MtrunA17_Chr1g0207981 29.744 390 240 11 1 373 29 401 1.87e-53 184
Msa0871470 MtrunA17_Chr7g0218811 33.071 381 219 12 1 374 31 382 5.14e-49 171
Msa0871470 MtrunA17_Chr7g0249981 30.909 385 226 12 1 374 41 396 9.93e-49 171
Msa0871470 MtrunA17_Chr5g0431441 32.208 385 223 12 1 374 34 391 1.52e-48 170
Msa0871470 MtrunA17_Chr7g0218821 30.670 388 230 9 1 374 21 383 3.29e-48 169
Msa0871470 MtrunA17_Chr7g0218841 31.759 381 224 10 1 374 22 373 1.99e-47 167
Msa0871470 MtrunA17_Chr5g0401721 30.025 393 238 14 1 373 24 399 2.77e-47 167
Msa0871470 MtrunA17_Chr4g0053501 27.506 389 244 10 1 373 27 393 2.79e-47 167
Msa0871470 MtrunA17_Chr5g0414331 29.243 383 232 11 1 373 29 382 8.74e-47 166
Msa0871470 MtrunA17_Chr7g0218831 30.390 385 223 10 1 374 22 372 2.95e-46 164
Msa0871470 MtrunA17_Chr4g0053321 30.311 386 237 12 1 373 42 408 1.45e-45 163
Msa0871470 MtrunA17_Chr5g0414321 29.843 382 231 13 1 373 27 380 4.44e-45 161
Msa0871470 MtrunA17_Chr5g0431361 30.655 336 204 6 43 374 67 377 1.74e-44 159
Msa0871470 MtrunA17_Chr6g0464841 32.571 350 192 12 36 374 68 384 2.37e-44 159
Msa0871470 MtrunA17_Chr7g0218791 29.306 389 231 10 1 374 21 380 2.41e-44 159
Msa0871470 MtrunA17_Chr6g0464871 30.412 388 226 11 1 374 39 396 8.29e-44 157
Msa0871470 MtrunA17_Chr1g0161351 28.093 388 250 8 1 374 53 425 9.51e-44 158
Msa0871470 MtrunA17_Chr6g0464881 29.639 388 227 12 1 373 27 383 1.81e-42 154
Msa0871470 MtrunA17_Chr5g0431401 30.564 337 200 8 43 374 65 372 4.03e-42 152
Msa0871470 MtrunA17_Chr1g0207971 28.460 383 240 9 1 373 24 382 9.65e-42 152
Msa0871470 MtrunA17_Chr1g0207861 28.238 386 252 7 1 374 24 396 3.10e-41 151
Msa0871470 MtrunA17_Chr1g0207951 27.411 394 231 7 1 373 140 499 6.49e-41 154
Msa0871470 MtrunA17_Chr1g0207951 28.900 391 233 10 1 373 672 1035 1.94e-38 146
Msa0871470 MtrunA17_Chr4g0011051 32.550 298 186 8 81 373 118 405 9.13e-41 150
Msa0871470 MtrunA17_Chr3g0098111 26.750 400 238 11 1 373 25 396 3.03e-40 148
Msa0871470 MtrunA17_Chr6g0464861 30.077 389 225 14 1 374 27 383 6.01e-40 147
Msa0871470 MtrunA17_Chr8g0380531 29.843 382 238 10 1 373 26 386 6.28e-40 147
Msa0871470 MtrunA17_Chr8g0365811 29.082 392 241 12 1 373 511 884 7.49e-40 150
Msa0871470 MtrunA17_Chr8g0365811 28.465 404 232 11 1 373 25 402 9.95e-39 147
Msa0871470 MtrunA17_Chr7g0250001 27.937 383 238 11 1 373 22 376 5.28e-39 144
Msa0871470 MtrunA17_Chr6g0464921 27.907 387 236 11 1 373 27 384 9.88e-39 144
Msa0871470 MtrunA17_Chr5g0431421 29.080 337 205 9 43 374 65 372 1.67e-38 143
Msa0871470 MtrunA17_Chr7g0232401 29.808 312 187 6 76 374 105 397 2.44e-38 143
Msa0871470 MtrunA17_Chr5g0393591 27.467 375 230 6 1 366 33 374 4.44e-38 142
Msa0871470 MtrunA17_Chr7g0232311 33.108 296 159 8 95 374 121 393 1.01e-37 141
Msa0871470 MtrunA17_Chr8g0377921 27.848 395 236 12 2 373 21 389 2.75e-37 140
Msa0871470 MtrunA17_Chr1g0207831 29.073 399 222 14 3 374 26 390 3.17e-37 140
Msa0871470 MtrunA17_Chr5g0431371 29.794 339 200 9 43 374 65 372 3.44e-37 139
Msa0871470 MtrunA17_Chr8g0373301 32.248 307 165 10 82 370 111 392 3.75e-37 139
Msa0871470 MtrunA17_Chr7g0243631 27.249 389 250 10 4 374 32 405 6.89e-37 139
Msa0871470 MtrunA17_Chr6g0462531 30.104 289 168 6 97 374 129 394 7.42e-37 139
Msa0871470 MtrunA17_Chr5g0419761 31.148 305 177 11 82 373 118 402 1.10e-36 139
Msa0871470 MtrunA17_Chr7g0275681 28.244 393 240 14 1 373 28 398 2.01e-36 138
Msa0871470 MtrunA17_Chr6g0462521 30.104 289 159 6 97 374 124 380 2.08e-36 137
Msa0871470 MtrunA17_Chr7g0249931 27.778 378 232 12 1 366 56 404 6.91e-36 136
Msa0871470 MtrunA17_Chr6g0462571 29.066 289 171 7 97 374 126 391 1.21e-35 135
Msa0871470 MtrunA17_Chr7g0265101 30.878 353 193 16 46 373 79 405 1.54e-35 135
Msa0871470 MtrunA17_Chr7g0243951 31.081 296 185 8 85 374 121 403 2.51e-35 135
Msa0871470 MtrunA17_Chr8g0347281 30.820 305 175 8 83 373 119 401 3.15e-35 134
Msa0871470 MtrunA17_Chr4g0072761 28.981 314 189 7 58 370 101 381 3.24e-35 134
Msa0871470 MtrunA17_Chr5g0419771 27.778 342 215 11 42 374 111 429 3.52e-35 135
Msa0871470 MtrunA17_Chr7g0232391 29.582 311 176 8 82 373 108 394 3.96e-35 134
Msa0871470 MtrunA17_Chr8g0336741 31.596 307 174 8 82 373 115 400 4.95e-35 134
Msa0871470 MtrunA17_Chr6g0459311 32.653 294 157 8 97 373 130 399 5.27e-35 134
Msa0871470 MtrunA17_Chr6g0462541 28.966 290 169 7 97 374 129 393 8.82e-35 133
Msa0871470 MtrunA17_Chr3g0106231 30.068 296 179 7 81 374 108 377 1.09e-34 133
Msa0871470 MtrunA17_Chr4g0044511 27.649 387 247 13 3 373 58 427 1.23e-34 133
Msa0871470 MtrunA17_Chr1g0207931 37.158 183 111 2 193 373 244 424 1.24e-34 133
Msa0871470 MtrunA17_Chr8g0347271 30.492 305 176 8 83 373 120 402 1.53e-34 132
Msa0871470 MtrunA17_Chr7g0265051 28.814 354 207 16 41 373 74 403 1.96e-34 132
Msa0871470 MtrunA17_Chr8g0366391 29.114 395 240 15 1 373 25 401 2.04e-34 132
Msa0871470 MtrunA17_Chr5g0432731 35.593 236 124 5 146 373 6 221 2.09e-34 129
Msa0871470 MtrunA17_Chr7g0243931 30.743 296 187 7 85 374 127 410 2.39e-34 132
Msa0871470 MtrunA17_Chr7g0243681 27.566 341 213 14 46 374 80 398 2.66e-34 132
Msa0871470 MtrunA17_Chr7g0243801 30.272 294 187 9 85 374 117 396 3.11e-34 132
Msa0871470 MtrunA17_Chr3g0122001 29.592 392 244 11 1 373 502 880 3.30e-34 134
Msa0871470 MtrunA17_Chr3g0122001 29.517 393 243 12 1 373 22 400 3.16e-32 128
Msa0871470 MtrunA17_Chr7g0243771 30.272 294 187 9 85 374 116 395 4.15e-34 131
Msa0871470 MtrunA17_Chr7g0243861 29.730 296 190 8 85 374 124 407 9.50e-34 130
Msa0871470 MtrunA17_Chr4g0042891 30.033 303 182 9 84 373 110 395 1.03e-33 130
Msa0871470 MtrunA17_Chr7g0265141 32.432 296 181 9 84 373 120 402 1.08e-33 130
Msa0871470 MtrunA17_Chr7g0232331 30.380 316 169 12 82 374 108 395 1.17e-33 130
Msa0871470 MtrunA17_Chr7g0265041 27.295 403 239 14 1 373 27 405 1.51e-33 130
Msa0871470 MtrunA17_Chr8g0334851 28.846 312 176 8 83 373 112 398 2.42e-33 129
Msa0871470 MtrunA17_Chr7g0243781 26.221 389 246 13 4 374 28 393 2.66e-33 129
Msa0871470 MtrunA17_Chr8g0335141 32.362 309 162 11 84 373 116 396 2.80e-33 129
Msa0871470 MtrunA17_Chr4g0014061 25.815 399 240 10 1 374 25 392 3.10e-33 129
Msa0871470 MtrunA17_Chr1g0179901 28.428 299 189 8 84 373 127 409 3.89e-33 129
Msa0871470 MtrunA17_Chr8g0361371 27.295 403 226 14 1 370 23 391 4.06e-33 129
Msa0871470 MtrunA17_Chr5g0431431 34.934 229 131 5 146 373 110 321 4.94e-33 126
Msa0871470 MtrunA17_Chr7g0243611 32.407 216 139 4 163 374 52 264 6.36e-33 124
Msa0871470 MtrunA17_Chr7g0232411 29.063 320 168 10 82 374 108 395 9.65e-33 127
Msa0871470 MtrunA17_Chr7g0232341 27.922 308 187 7 82 374 108 395 1.04e-32 127
Msa0871470 MtrunA17_Chr4g0060511 29.180 305 180 9 85 374 124 407 1.40e-32 127
Msa0871470 MtrunA17_Chr8g0336691 29.904 311 176 8 82 373 1021 1308 2.12e-32 129
Msa0871470 MtrunA17_Chr8g0336691 28.803 309 182 7 82 373 115 402 2.29e-32 129
Msa0871470 MtrunA17_Chr8g0336691 28.716 296 171 9 82 373 582 841 7.28e-26 109
Msa0871470 MtrunA17_Chr8g0335161 32.082 293 163 9 97 373 122 394 2.38e-32 126
Msa0871470 MtrunA17_Chr6g0486251 30.847 295 163 8 97 374 123 393 3.28e-32 126
Msa0871470 MtrunA17_Chr6g0486201 30.847 295 163 8 97 374 123 393 3.28e-32 126
Msa0871470 MtrunA17_Chr1g0153451 30.097 309 176 8 81 373 108 392 4.16e-32 125
Msa0871470 MtrunA17_Chr7g0243761 28.716 296 192 6 85 374 121 403 6.24e-32 125
Msa0871470 MtrunA17_Chr8g0336731 29.967 307 179 7 82 373 134 419 8.34e-32 125
Msa0871470 MtrunA17_Chr6g0449931 34.025 241 126 6 152 373 170 396 8.92e-32 125
Msa0871470 MtrunA17_Chr8g0336651 30.195 308 179 8 82 374 108 394 9.79e-32 127
Msa0871470 MtrunA17_Chr8g0336651 29.260 311 180 8 82 373 883 1172 3.45e-30 122
Msa0871470 MtrunA17_Chr8g0336651 35.638 188 88 5 190 373 545 703 2.58e-27 114
Msa0871470 MtrunA17_Chr5g0416741 29.352 293 193 7 85 374 123 404 1.19e-31 125
Msa0871470 MtrunA17_Chr6g0462551 27.835 291 177 7 95 374 126 394 1.46e-31 124
Msa0871470 MtrunA17_Chr3g0121991 30.519 308 186 10 82 373 178 473 1.80e-31 125
Msa0871470 MtrunA17_Chr8g0339631 29.677 310 180 9 82 373 109 398 1.88e-31 124
Msa0871470 MtrunA17_Chr6g0463891 27.735 393 245 12 3 374 30 404 2.15e-31 124
Msa0871470 MtrunA17_Chr5g0448551 29.392 296 187 9 83 374 107 384 3.09e-31 123
Msa0871470 MtrunA17_Chr8g0339461 30.794 315 172 9 82 373 109 400 3.43e-31 123
Msa0871470 MtrunA17_Chr5g0440421 29.221 308 188 10 81 374 127 418 3.66e-31 123
Msa0871470 MtrunA17_Chr7g0265151 29.560 318 194 10 67 373 102 400 4.08e-31 123
Msa0871470 MtrunA17_Chr7g0249961 37.427 171 101 3 205 374 24 189 7.81e-31 118
Msa0871470 MtrunA17_Chr8g0339451 32.051 312 172 10 82 373 101 392 9.91e-31 122
Msa0871470 MtrunA17_Chr5g0401851 26.650 394 250 14 3 374 28 404 1.57e-30 121
Msa0871470 MtrunA17_Chr7g0235051 30.556 216 143 4 163 374 161 373 4.62e-30 120
Msa0871470 MtrunA17_Chr3g0106251 31.646 237 141 6 139 374 3 219 6.97e-30 117
Msa0871470 MtrunA17_Chr5g0426411 43.243 148 68 4 1 135 28 172 9.47e-30 112
Msa0871470 MtrunA17_Chr7g0243871 29.153 295 181 8 85 373 119 391 1.02e-29 119
Msa0871470 MtrunA17_Chr4g0044501 29.054 296 187 12 85 373 120 399 2.02e-29 118
Msa0871470 MtrunA17_Chr4g0072771 28.814 295 178 9 83 373 131 397 2.52e-29 118
Msa0871470 MtrunA17_Chr8g0369341 28.947 304 188 10 81 374 115 400 2.86e-29 118
Msa0871470 MtrunA17_Chr7g0275511 27.508 309 186 7 83 374 118 405 3.50e-29 117
Msa0871470 MtrunA17_Chr8g0334861 31.818 242 132 6 152 374 166 393 4.85e-29 117
Msa0871470 MtrunA17_Chr1g0165701 28.767 292 193 7 86 374 125 404 5.56e-29 117
Msa0871470 MtrunA17_Chr2g0294931 26.854 391 247 13 3 373 29 400 5.78e-29 117
Msa0871470 MtrunA17_Chr1g0159551 32.547 212 117 7 177 374 188 387 5.79e-29 117
Msa0871470 MtrunA17_Chr5g0442541 27.451 306 191 7 83 374 102 390 6.15e-29 117
Msa0871470 MtrunA17_Chr4g0042931 30.000 310 179 11 81 373 105 393 6.21e-29 117
Msa0871470 MtrunA17_Chr2g0294921 26.396 394 245 14 3 373 178 549 7.95e-29 117
Msa0871470 MtrunA17_Chr3g0079731 29.283 321 174 8 83 374 113 409 8.58e-29 116
Msa0871470 MtrunA17_Chr2g0329111 28.758 306 177 11 85 373 119 400 8.77e-29 117
Msa0871470 MtrunA17_Chr8g0355221 28.188 298 190 8 86 374 125 407 9.60e-29 117
Msa0871470 MtrunA17_Chr5g0442561 28.065 310 184 11 83 374 109 397 9.62e-29 116
Msa0871470 MtrunA17_Chr5g0448521 26.582 316 194 8 73 370 92 387 1.06e-28 116
Msa0871470 MtrunA17_Chr2g0294941 27.723 303 184 10 85 373 17 298 1.15e-28 115
Msa0871470 MtrunA17_Chr8g0377941 33.772 228 130 5 152 373 175 387 1.24e-28 116
Msa0871470 MtrunA17_Chr8g0334831 26.634 413 224 17 1 370 22 398 1.33e-28 116
Msa0871470 MtrunA17_Chr5g0428081 26.546 388 250 12 3 373 29 398 3.24e-28 115
Msa0871470 MtrunA17_Chr7g0243711 33.333 183 113 4 195 374 60 236 3.33e-28 112
Msa0871470 MtrunA17_Chr5g0420801 29.470 302 182 11 81 374 112 390 4.15e-28 114
Msa0871470 MtrunA17_Chr7g0243811 27.797 295 183 7 85 374 99 368 4.98e-28 113
Msa0871470 MtrunA17_Chr4g0066221 27.536 345 210 14 46 373 78 399 8.23e-28 114
Msa0871470 MtrunA17_Chr1g0173121 34.946 186 102 4 194 369 209 385 1.37e-27 113
Msa0871470 MtrunA17_Chr8g0339601 36.275 204 100 7 190 373 66 259 7.41e-27 108
Msa0871470 MtrunA17_Chr8g0374931 26.010 396 244 14 3 373 29 400 8.38e-27 111
Msa0871470 MtrunA17_Chr7g0243851 31.443 194 126 5 187 374 170 362 8.42e-27 110
Msa0871470 MtrunA17_Chr4g0044521 26.861 309 174 13 86 373 109 386 9.31e-27 110
Msa0871470 MtrunA17_Chr7g0265111 30.921 304 178 12 81 371 147 431 1.07e-26 111
Msa0871470 MtrunA17_Chr5g0403641 32.093 215 113 5 182 373 225 429 1.79e-26 110
Msa0871470 MtrunA17_Chr5g0442601 26.433 314 190 9 81 374 508 800 2.10e-26 111
Msa0871470 MtrunA17_Chr5g0442601 24.262 305 179 7 83 374 62 327 3.34e-22 98.6
Msa0871470 MtrunA17_Chr7g0243911 38.462 143 84 2 235 374 9 150 2.22e-26 105
Msa0871470 MtrunA17_Chr8g0370941 26.979 341 184 10 73 374 100 414 2.24e-26 110
Msa0871470 MtrunA17_Chr8g0339441 40.141 142 69 3 248 373 217 358 2.62e-26 109
Msa0871470 MtrunA17_Chr4g0066201 27.792 403 216 18 3 374 36 394 2.83e-26 109
Msa0871470 MtrunA17_Chr7g0218311 26.531 392 244 13 3 373 34 402 2.89e-26 109
Msa0871470 MtrunA17_Chr4g0044481 29.392 296 159 9 85 373 137 389 3.44e-26 108
Msa0871470 MtrunA17_Chr5g0416821 28.269 283 183 8 83 358 123 392 5.11e-26 108
Msa0871470 MtrunA17_Chr2g0302991 28.763 299 180 7 83 370 111 387 5.38e-26 108
Msa0871470 MtrunA17_Chr8g0382021 30.806 211 123 6 177 374 215 415 5.82e-26 108
Msa0871470 MtrunA17_Chr5g0442521 25.817 306 189 7 83 370 110 395 6.46e-26 108
Msa0871470 MtrunA17_Chr1g0153461 41.429 140 69 3 247 373 2 141 6.47e-26 103
Msa0871470 MtrunA17_Chr2g0302961 29.393 313 176 10 73 370 108 390 1.09e-25 107
Msa0871470 MtrunA17_Chr4g0066151 25.441 397 236 13 3 373 36 398 2.26e-25 107
Msa0871470 MtrunA17_Chr5g0442491 25.402 311 191 8 83 374 111 399 2.26e-25 107
Msa0871470 MtrunA17_Chr7g0232351 32.407 216 111 7 162 358 179 378 2.55e-25 105
Msa0871470 MtrunA17_Chr5g0442581 24.759 311 195 8 83 374 111 401 2.88e-25 107
Msa0871470 MtrunA17_Chr4g0066261 32.536 209 123 6 178 373 197 400 1.67e-24 104
Msa0871470 MtrunA17_Chr2g0278721 32.130 277 155 13 109 373 651 906 4.36e-24 104
Msa0871470 MtrunA17_Chr2g0278721 37.692 130 78 2 246 374 269 396 4.17e-19 89.4
Msa0871470 MtrunA17_Chr6g0463851 23.604 394 260 12 2 373 28 402 4.42e-24 103
Msa0871470 MtrunA17_Chr5g0429681 29.966 297 178 13 83 370 151 426 4.89e-24 103
Msa0871470 MtrunA17_Chr6g0463861 26.239 343 216 10 46 373 73 393 5.32e-24 103
Msa0871470 MtrunA17_Chr3g0092031 39.844 128 74 2 247 373 2 127 5.45e-24 98.2
Msa0871470 MtrunA17_Chr4g0066281 29.119 261 167 6 121 373 135 385 6.66e-24 102
Msa0871470 MtrunA17_Chr8g0374971 30.047 213 136 5 172 373 189 399 6.92e-24 102
Msa0871470 MtrunA17_Chr7g0241781 43.089 123 63 2 249 370 241 357 8.18e-24 102
Msa0871470 MtrunA17_Chr8g0374901 28.440 218 135 5 172 374 187 398 9.82e-24 102
Msa0871470 MtrunA17_Chr8g0374941 25.667 300 190 8 86 373 585 863 1.09e-23 103
Msa0871470 MtrunA17_Chr8g0374941 24.415 299 195 8 86 373 120 398 2.84e-23 102
Msa0871470 MtrunA17_Chr8g0374941 25.070 355 205 14 46 373 1016 1336 2.13e-22 99.4
Msa0871470 MtrunA17_Chr4g0066131 24.872 390 247 13 3 373 31 393 1.38e-23 102
Msa0871470 MtrunA17_Chr2g0307961 25.893 336 229 9 45 374 79 400 1.72e-23 101
Msa0871470 MtrunA17_Chr5g0429711 28.667 300 174 11 83 370 115 386 2.68e-23 100
Msa0871470 MtrunA17_Chr5g0410941 25.765 392 246 11 3 373 41 408 4.22e-23 100
Msa0871470 MtrunA17_Chr8g0336321 24.745 392 257 12 2 374 24 396 5.22e-23 100
Msa0871470 MtrunA17_Chr5g0409591 29.858 211 126 7 185 373 205 415 6.17e-23 100
Msa0871470 MtrunA17_Chr7g0241801 40.157 127 69 2 248 373 240 360 1.01e-22 99.0
Msa0871470 MtrunA17_Chr6g0466831 25.781 384 248 12 2 373 35 393 1.75e-22 98.6
Msa0871470 MtrunA17_Chr5g0427571 32.979 188 122 4 190 373 42 229 3.05e-22 95.9
Msa0871470 MtrunA17_Chr8g0361411 27.213 305 192 10 82 374 100 386 4.38e-22 97.4
Msa0871470 MtrunA17_Chr6g0464091 30.901 233 135 9 150 371 181 398 4.90e-22 97.4
Msa0871470 MtrunA17_Chr5g0442511 25.161 310 170 12 83 374 153 418 5.83e-22 97.1
Msa0871470 MtrunA17_Chr8g0336251 24.490 392 258 12 2 374 24 396 7.06e-22 96.7
Msa0871470 MtrunA17_Chr8g0350881 28.111 217 135 5 172 373 189 399 8.72e-22 96.7
Msa0871470 MtrunA17_Chr6g0466841 25.389 386 247 15 2 373 35 393 1.31e-21 95.9
Msa0871470 MtrunA17_Chr6g0482061 28.814 236 142 6 152 373 186 409 3.01e-21 95.1
Msa0871470 MtrunA17_Chr4g0069611 26.357 387 242 14 2 373 32 390 7.21e-21 93.6
Msa0871470 MtrunA17_Chr4g0066171 25.707 389 239 14 3 373 39 395 9.34e-21 93.6
Msa0871470 MtrunA17_Chr8g0367221 40.945 127 72 2 250 373 1057 1183 1.21e-20 94.4
Msa0871470 MtrunA17_Chr8g0367221 37.692 130 78 2 247 373 267 396 3.12e-20 92.8
Msa0871470 MtrunA17_Chr8g0367221 37.008 127 77 2 250 373 1547 1673 9.53e-19 88.6
Msa0871470 MtrunA17_Chr2g0302851 37.795 127 76 2 246 371 265 389 2.62e-19 89.0
Msa0871470 MtrunA17_Chr7g0231631 30.178 169 115 2 194 359 11 179 6.66e-19 85.9
Msa0871470 MtrunA17_Chr3g0079711 40.517 116 52 4 275 374 3 117 7.56e-19 83.6
Msa0871470 MtrunA17_Chr4g0039881 37.984 129 77 2 246 373 241 367 8.50e-19 87.4
Msa0871470 MtrunA17_Chr8g0357361 31.088 193 114 6 189 373 60 241 2.07e-18 84.3
Msa0871470 MtrunA17_Chr2g0278741 36.923 130 79 2 246 374 351 478 7.34e-18 85.1
Msa0871470 MtrunA17_Chr8g0337381 56.364 55 24 0 319 373 2 56 1.34e-16 75.9
Msa0871470 MtrunA17_Chr7g0250021 24.595 309 193 10 1 295 28 310 3.72e-16 78.6
Msa0871470 MtrunA17_Chr2g0283041 27.749 191 110 5 192 373 211 382 1.09e-15 78.2
Msa0871470 MtrunA17_Chr4g0040691 27.895 190 123 4 188 374 208 386 1.46e-15 77.8
Msa0871470 MtrunA17_Chr1g0207881 51.786 56 27 0 318 373 256 311 8.10e-15 75.1
Msa0871470 MtrunA17_Chr4g0040711 28.571 189 121 6 188 373 208 385 9.59e-15 75.5
Msa0871470 MtrunA17_Chr1g0196851 29.630 135 90 3 245 374 291 425 5.38e-14 73.2
Msa0871470 MtrunA17_Chr4g0029131 27.000 200 125 6 182 374 200 385 7.79e-14 72.8
Msa0871470 MtrunA17_Chr6g0454241 62.500 48 18 0 127 174 31 78 8.05e-14 66.2
Msa0871470 MtrunA17_Chr4g0066141 49.091 55 28 0 319 373 216 270 5.53e-13 69.3
Msa0871470 MtrunA17_Chr6g0454391 65.854 41 14 0 333 373 11 51 2.28e-12 63.5
Msa0871470 MtrunA17_Chr6g0454311 58.696 46 19 0 141 186 10 55 6.04e-12 60.5
Msa0871470 MtrunA17_Chr8g0334841 28.378 148 88 4 152 295 1 134 6.88e-12 63.5
Msa0871470 MtrunA17_Chr7g0243731 43.333 60 33 1 315 373 4 63 7.37e-12 60.8
Msa0871470 MtrunA17_Chr4g0029151 28.889 135 91 3 245 374 259 393 2.88e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0871470 AT1G22360.2 50.262 382 179 2 1 371 26 407 1.11e-136 398
Msa0871470 AT1G22360.1 50.262 382 179 2 1 371 26 407 1.29e-136 398
Msa0871470 AT1G22380.1 48.571 385 187 2 1 374 29 413 7.62e-133 389
Msa0871470 AT1G22340.1 47.826 391 182 5 1 374 29 414 8.73e-131 384
Msa0871470 AT1G22400.1 48.843 389 181 5 1 374 29 414 1.87e-130 383
Msa0871470 AT1G22370.2 47.680 388 181 4 1 374 29 408 1.51e-127 375
Msa0871470 AT1G78270.1 46.530 389 189 5 1 374 29 413 1.52e-124 368
Msa0871470 AT1G22370.1 51.293 232 111 1 145 374 7 238 1.14e-86 265
Msa0871470 AT5G59590.1 36.203 395 192 14 1 373 26 382 4.27e-65 214
Msa0871470 AT5G59580.1 36.761 389 197 13 1 373 25 380 1.02e-64 213
Msa0871470 AT5G05900.1 34.961 389 205 11 1 373 24 380 2.90e-64 211
Msa0871470 AT5G05890.1 34.359 390 211 10 1 373 24 385 6.74e-64 211
Msa0871470 AT3G46670.1 35.219 389 204 12 1 373 25 381 5.81e-63 208
Msa0871470 AT5G05860.1 33.333 390 209 10 1 373 25 380 2.86e-60 201
Msa0871470 AT5G05880.1 33.763 388 212 11 1 373 24 381 1.43e-59 199
Msa0871470 AT3G46680.1 34.625 387 204 13 1 370 25 379 1.69e-59 199
Msa0871470 AT3G11340.1 34.359 390 200 14 2 373 26 377 5.92e-59 197
Msa0871470 AT3G46660.1 34.704 389 208 12 1 373 30 388 1.39e-58 197
Msa0871470 AT5G05870.1 32.905 389 220 9 1 373 24 387 1.17e-57 194
Msa0871470 AT2G36970.1 31.472 394 231 10 1 373 26 401 3.71e-56 191
Msa0871470 AT3G46690.1 33.077 390 212 12 1 373 25 382 1.22e-55 189
Msa0871470 AT3G55700.1 34.359 390 209 12 1 373 24 383 5.12e-55 187
Msa0871470 AT5G38010.1 33.418 392 211 13 1 373 26 386 1.12e-54 186
Msa0871470 AT3G46700.1 34.026 385 204 15 1 370 25 374 2.56e-54 185
Msa0871470 AT3G46650.1 33.508 382 197 12 1 370 26 362 3.00e-53 182
Msa0871470 AT5G38040.1 31.969 391 214 14 1 373 26 382 1.21e-52 181
Msa0871470 AT2G26480.1 32.115 383 222 11 1 373 24 378 2.10e-51 178
Msa0871470 AT3G55710.1 33.929 392 212 14 1 373 24 387 7.32e-51 177
Msa0871470 AT3G46720.1 33.333 384 210 13 1 373 25 373 1.87e-50 175
Msa0871470 AT2G28080.1 29.534 386 244 9 1 373 34 404 2.28e-50 176
Msa0871470 AT4G15480.1 28.974 390 235 11 1 370 35 402 8.00e-48 169
Msa0871470 AT4G15490.1 29.199 387 237 10 1 370 24 390 1.43e-47 168
Msa0871470 AT3G02100.1 28.866 388 237 11 1 374 29 391 1.15e-44 160
Msa0871470 AT3G21560.1 29.427 384 242 10 1 370 28 396 3.16e-44 159
Msa0871470 AT4G15500.1 28.571 385 237 13 1 370 25 386 9.80e-44 158
Msa0871470 AT2G30140.2 29.921 381 227 11 1 374 29 376 8.68e-43 155
Msa0871470 AT2G30140.1 29.659 381 229 10 1 374 29 377 9.02e-43 155
Msa0871470 AT2G23250.1 32.653 294 170 10 85 373 93 363 1.33e-40 149
Msa0871470 AT2G36800.1 31.658 398 223 17 3 373 30 405 2.39e-40 149
Msa0871470 AT2G30150.1 29.118 340 213 7 39 374 47 362 2.45e-40 148
Msa0871470 AT5G17050.1 29.553 291 186 4 83 373 117 388 2.90e-40 148
Msa0871470 AT5G37950.1 29.620 368 223 10 1 358 2 343 2.94e-40 146
Msa0871470 AT2G30150.2 29.118 340 213 7 39 374 63 378 3.11e-40 148
Msa0871470 AT2G36760.1 31.095 402 219 17 3 373 32 406 3.39e-40 149
Msa0871470 AT3G16520.1 30.435 299 180 7 83 373 113 391 5.24e-40 147
Msa0871470 AT3G16520.2 30.435 299 180 7 83 373 113 391 5.34e-40 147
Msa0871470 AT3G16520.3 30.435 299 180 7 83 373 113 391 7.45e-40 147
Msa0871470 AT2G36770.1 28.856 402 234 18 1 374 30 407 1.08e-39 147
Msa0871470 AT1G30530.1 28.614 332 210 7 46 373 74 382 1.65e-39 146
Msa0871470 AT3G53160.1 30.861 337 211 10 46 373 77 400 3.15e-39 146
Msa0871470 AT4G01070.1 29.293 396 225 11 5 373 29 396 4.17e-39 145
Msa0871470 AT5G37950.2 29.973 367 217 10 1 358 2 337 4.86e-39 142
Msa0871470 AT2G31790.1 29.016 386 237 11 1 373 24 385 6.78e-39 144
Msa0871470 AT2G23260.1 30.612 294 183 8 84 373 105 381 2.29e-38 143
Msa0871470 AT4G34135.1 28.934 394 243 12 1 373 27 404 5.23e-38 142
Msa0871470 AT4G34131.1 29.607 331 177 11 62 373 111 404 1.07e-37 142
Msa0871470 AT2G36780.1 29.008 393 243 15 1 373 30 406 1.47e-37 141
Msa0871470 AT2G36790.1 32.010 403 214 17 3 373 31 405 4.93e-37 140
Msa0871470 AT1G05680.1 29.866 298 185 6 82 373 102 381 8.96e-37 139
Msa0871470 AT1G05675.1 30.272 294 189 5 82 373 102 381 2.30e-36 137
Msa0871470 AT4G15550.1 27.226 393 244 11 1 373 29 399 2.89e-36 137
Msa0871470 AT2G36750.1 28.571 406 221 16 3 372 28 400 3.36e-36 137
Msa0871470 AT2G15480.1 27.612 402 242 14 1 374 26 406 4.03e-36 137
Msa0871470 AT5G17040.2 31.034 232 149 3 142 373 49 269 4.05e-36 134
Msa0871470 AT5G17040.1 29.897 291 179 5 83 373 106 371 4.40e-36 136
Msa0871470 AT5G17030.1 27.832 309 205 5 66 373 96 387 4.80e-36 137
Msa0871470 AT2G15480.2 27.612 402 242 14 1 374 26 406 5.44e-36 137
Msa0871470 AT5G66690.1 30.696 316 167 9 84 373 106 395 2.87e-35 135
Msa0871470 AT3G50740.1 28.481 316 174 7 84 373 111 400 5.00e-34 132
Msa0871470 AT2G31750.1 26.178 382 249 12 1 373 24 381 5.88e-34 131
Msa0871470 AT2G43820.1 29.199 387 223 15 2 373 24 374 5.97e-34 131
Msa0871470 AT1G01390.1 30.960 323 185 9 66 374 99 397 9.92e-34 130
Msa0871470 AT2G31750.2 26.546 388 240 13 1 373 24 381 1.04e-33 130
Msa0871470 AT1G01390.2 30.960 323 185 9 66 374 116 414 1.40e-33 130
Msa0871470 AT2G43840.2 28.866 388 223 16 2 373 24 374 2.54e-33 129
Msa0871470 AT1G24100.1 30.794 315 161 10 82 373 106 386 6.46e-33 128
Msa0871470 AT2G15490.3 27.407 405 239 14 1 374 23 403 1.26e-32 127
Msa0871470 AT1G01420.2 29.538 325 187 9 66 374 102 400 1.61e-32 127
Msa0871470 AT1G01420.1 29.538 325 187 9 66 374 99 397 1.92e-32 127
Msa0871470 AT2G43840.1 28.608 388 224 16 2 373 24 374 3.24e-32 126
Msa0871470 AT2G15490.1 27.206 408 239 14 1 374 23 406 3.39e-32 126
Msa0871470 AT3G21800.1 29.107 347 215 10 43 374 68 398 3.58e-32 126
Msa0871470 AT3G22250.1 25.622 402 243 10 1 373 24 398 1.44e-31 124
Msa0871470 AT3G53150.1 28.947 304 189 11 80 373 131 417 1.85e-31 125
Msa0871470 AT1G05560.1 26.154 390 233 10 5 373 26 381 2.11e-31 124
Msa0871470 AT4G15260.1 29.268 287 171 8 96 370 7 273 3.03e-31 122
Msa0871470 AT1G05560.2 26.154 390 233 10 5 373 76 431 4.24e-31 124
Msa0871470 AT4G34138.1 29.043 303 173 9 85 373 131 405 5.86e-31 123
Msa0871470 AT5G26310.1 34.123 211 98 6 189 373 200 395 7.26e-31 123
Msa0871470 AT4G15280.1 28.438 320 188 10 70 370 96 393 1.87e-30 121
Msa0871470 AT1G05530.1 26.912 353 210 9 36 373 65 384 2.25e-30 121
Msa0871470 AT4G15280.2 28.438 320 188 10 70 370 128 425 2.89e-30 121
Msa0871470 AT3G21760.1 27.523 327 206 7 58 370 91 400 6.40e-30 120
Msa0871470 AT1G07260.1 29.054 296 182 8 83 370 120 395 1.76e-29 119
Msa0871470 AT3G21780.1 29.430 316 189 9 69 370 93 388 2.12e-29 119
Msa0871470 AT3G21790.1 28.239 301 190 5 81 370 112 397 2.60e-29 119
Msa0871470 AT2G29710.1 29.553 291 182 9 83 370 115 385 5.30e-28 114
Msa0871470 AT1G73880.1 29.412 323 197 11 60 374 99 398 6.05e-28 114
Msa0871470 AT2G29740.1 30.201 298 182 8 83 374 125 402 8.26e-28 114
Msa0871470 AT1G07250.1 29.433 282 170 7 97 370 136 396 9.98e-28 114
Msa0871470 AT2G29750.1 28.231 294 185 7 83 370 125 398 1.60e-27 113
Msa0871470 AT2G18560.1 32.218 239 130 6 152 373 79 302 1.91e-27 112
Msa0871470 AT1G10400.1 30.033 303 179 12 80 374 114 391 2.81e-27 112
Msa0871470 AT3G21750.1 26.974 304 181 7 86 370 107 388 6.56e-27 111
Msa0871470 AT2G29730.1 32.973 185 111 4 189 370 211 385 7.50e-27 111
Msa0871470 AT4G14090.1 28.278 389 229 16 1 373 29 383 1.45e-26 110
Msa0871470 AT1G07240.1 26.370 292 194 6 83 370 121 395 1.88e-26 110
Msa0871470 AT4G36770.1 29.741 232 124 7 168 374 177 394 3.10e-26 109
Msa0871470 AT5G14860.1 29.470 302 176 11 83 373 125 400 3.88e-26 109
Msa0871470 AT1G51210.1 29.956 227 136 7 152 373 179 387 1.69e-25 107
Msa0871470 AT2G16890.3 39.535 129 71 3 249 374 269 393 4.06e-25 106
Msa0871470 AT2G16890.2 39.535 129 71 3 249 374 269 393 4.33e-25 106
Msa0871470 AT5G03490.1 34.783 184 102 4 194 374 224 392 5.47e-25 106
Msa0871470 AT5G65550.1 25.063 395 246 11 1 373 25 391 3.45e-23 100
Msa0871470 AT2G18570.1 29.130 230 123 8 172 374 177 393 1.18e-22 99.4
Msa0871470 AT5G49690.1 24.147 381 259 11 1 373 26 384 1.61e-22 99.0
Msa0871470 AT5G12890.1 29.530 298 173 11 87 370 130 404 6.76e-21 94.4
Msa0871470 AT4G34135.2 26.984 315 195 10 1 295 27 326 9.12e-20 89.7
Msa0871470 AT2G22590.1 26.221 389 251 13 1 373 31 399 1.37e-18 87.4
Msa0871470 AT4G01070.2 26.230 305 183 9 5 295 29 305 1.28e-17 83.6
Msa0871470 AT1G06000.1 28.846 208 130 5 179 374 164 365 7.63e-17 82.0
Msa0871470 AT4G27570.1 30.075 133 87 3 245 373 244 374 4.83e-15 76.6
Msa0871470 AT1G64910.1 32.283 127 80 3 251 373 244 368 8.19e-15 75.9
Msa0871470 AT4G27560.1 29.323 133 88 3 245 373 244 374 2.59e-14 74.3
Msa0871470 AT5G54060.1 31.915 188 109 8 192 373 219 393 8.25e-14 72.8
Msa0871470 AT5G53990.1 29.921 127 83 3 251 373 244 368 1.30e-13 72.4
Msa0871470 AT4G09500.2 30.488 164 102 5 220 373 207 368 2.74e-13 71.2
Msa0871470 AT4G09500.1 33.333 120 74 3 258 373 226 343 3.10e-13 70.9
Msa0871470 AT2G22930.1 29.878 164 103 5 220 373 207 368 7.63e-13 70.1
Msa0871470 AT5G54010.1 29.688 128 84 3 250 373 249 374 1.42e-12 68.9
Msa0871470 AT3G29630.1 32.283 127 80 3 251 373 246 370 9.58e-12 66.6
Msa0871470 AT3G29630.2 32.283 127 80 3 251 373 220 344 1.16e-11 66.2
Msa0871470 AT1G50580.1 25.943 212 137 6 180 373 160 369 5.52e-11 64.3

Find 83 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGAAACAAATGGATATT+TGG 0.211601 6_1:-6349861 Msa0871470:CDS
AGGATCTTCCTACTTTAATT+AGG 0.231984 6_1:-6349793 Msa0871470:CDS
TCAGCAACTTCTACTGTAAA+TGG 0.239778 6_1:+6350447 None:intergenic
CATCTTTAGATTCTAATCTT+TGG 0.240223 6_1:-6349571 Msa0871470:CDS
ATGTAGTGCTTGTTTCTTCT+TGG 0.269212 6_1:-6350391 Msa0871470:CDS
TTGAAACCATCAAAGGCTTT+TGG 0.275289 6_1:+6350672 None:intergenic
TCTGTTGTTTATGTAAATTT+TGG 0.280760 6_1:-6349500 Msa0871470:CDS
ACTATAGTTGATTGGATTCC+AGG 0.321384 6_1:-6349836 Msa0871470:CDS
TGACCATTCTGAAACAATTT+CGG 0.334294 6_1:+6350354 None:intergenic
CATGGCGAAAATAGAACAAT+TGG 0.344321 6_1:+6350411 None:intergenic
TCAGAAACAAAGCAAGTTAC+TGG 0.351048 6_1:+6350480 None:intergenic
AGGTTATGTGAAAGCCTCTT+AGG 0.356656 6_1:+6350742 None:intergenic
TAGCAAATAATTCTACTGTT+AGG 0.360863 6_1:+6349173 None:intergenic
GAATTGATGGTGGGAGATAA+AGG 0.366402 6_1:-6349083 Msa0871470:three_prime_UTR
GCGGACACCAACTTGCTATT+AGG 0.366553 6_1:+6349321 None:intergenic
ATTTGCTAAGAATGGAAGAT+TGG 0.367968 6_1:-6349158 Msa0871470:exon
AAGGGTCCAAAAGCCTTTGA+TGG 0.381595 6_1:-6350678 Msa0871470:CDS
GTAGAATTATTTGCTAAGAA+TGG 0.382761 6_1:-6349166 Msa0871470:exon
ATTAGGCCTGATCTTGTCAT+TGG 0.388944 6_1:-6349395 Msa0871470:CDS
ACCAGATGGTTTAACTTCAA+TGG 0.396861 6_1:-6350628 Msa0871470:CDS
ATTTGGACACTATAGTTGAT+TGG 0.397502 6_1:-6349844 Msa0871470:CDS
TTTCCTTCTCTATACACAAT+TGG 0.399449 6_1:-6349638 Msa0871470:CDS
GAAATTGTTAGAGTTTGCTT+GGG 0.411975 6_1:-6349453 Msa0871470:CDS
GCAGATGAGGACACAAGATT+TGG 0.413358 6_1:-6349020 Msa0871470:three_prime_UTR
AATTCTATCATCAAGTCATT+AGG 0.416224 6_1:+6349761 None:intergenic
AGAAATTGTTAGAGTTTGCT+TGG 0.416951 6_1:-6349454 Msa0871470:CDS
TCCATTGAAGTTAAACCATC+TGG 0.423355 6_1:+6350627 None:intergenic
GTGAATGAAATTTCAGATAG+AGG 0.437302 6_1:-6349344 Msa0871470:CDS
AGTGCTTGTTTCTTCTTGGC+TGG 0.441801 6_1:-6350387 Msa0871470:CDS
TTTGCTAAGAATGGAAGATT+GGG 0.444354 6_1:-6349157 Msa0871470:exon
TGCCTTCTTCTTCAACTCCA+TGG 0.445104 6_1:+6349040 None:intergenic
TGATCTTGTCATTGGTGGCT+CGG 0.445782 6_1:-6349387 Msa0871470:CDS
GTCAAGAATCCGCCGATTGA+AGG 0.451247 6_1:+6349278 None:intergenic
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6_1:-6349392 Msa0871470:CDS
GAAACTGATTAATGAATTGA+TGG 0.464761 6_1:-6349096 Msa0871470:three_prime_UTR
ATTCCGAAATTGTTTCAGAA+TGG 0.484345 6_1:-6350357 Msa0871470:CDS
TACCTCTTCTCTCTTTACAT+TGG 0.485576 6_1:+6349121 None:intergenic
AAGATACTAAATGTCTTGAA+TGG 0.490321 6_1:-6349544 Msa0871470:CDS
GATGCGAGTTATGAAACAAA+TGG 0.493935 6_1:-6349869 Msa0871470:CDS
CAAACGTTTGCTCAAATCAA+AGG 0.494520 6_1:-6350697 Msa0871470:CDS
GAGCCACCAATGACAAGATC+AGG 0.503138 6_1:+6349389 None:intergenic
AGGAAAGAAGATGAGGCAAA+AGG 0.504752 6_1:-6349063 Msa0871470:three_prime_UTR
GCAAAACTACTTCACCTAAG+AGG 0.504849 6_1:-6350756 Msa0871470:CDS
ATAGAATTTATGACTGAAGT+GGG 0.517633 6_1:-6349746 Msa0871470:CDS
ATGGCGAAAATAGAACAATT+GGG 0.520117 6_1:+6350412 None:intergenic
GATGAGGACACAAGATTTGG+TGG 0.524837 6_1:-6349017 Msa0871470:three_prime_UTR
ACCATCTGGTATGGTCTCAA+AGG 0.528576 6_1:+6350641 None:intergenic
CTTCATGAATCTGCTACTGC+TGG 0.533056 6_1:-6350513 Msa0871470:CDS
GTGTTGAACCATCCTTCAAT+CGG 0.534737 6_1:-6349290 Msa0871470:CDS
TGAAGTTAAACCATCTGGTA+TGG 0.537909 6_1:+6350632 None:intergenic
ATTGTATTCAGCTTTAACAA+AGG 0.542172 6_1:+6350722 None:intergenic
GAAGATGAGGCAAAAGGCCA+TGG 0.548548 6_1:-6349057 Msa0871470:three_prime_UTR
AAACGTTTGCTCAAATCAAA+GGG 0.550312 6_1:-6350696 Msa0871470:CDS
TGGTTCAACACTTTCTCTTG+CGG 0.554655 6_1:+6349302 None:intergenic
GGCCATGGAGTTGAAGAAGA+AGG 0.559979 6_1:-6349042 Msa0871470:three_prime_UTR
GATGGTTTAACTTCAATGGA+AGG 0.560103 6_1:-6350624 Msa0871470:CDS
GTTGAAGAAGAAGGCAGATG+AGG 0.560190 6_1:-6349033 Msa0871470:three_prime_UTR
GATTCTTGACTCATTGCGGA+TGG 0.560350 6_1:-6349265 Msa0871470:CDS
TGGTTGTTCATATATGAACT+TGG 0.560604 6_1:-6348997 Msa0871470:three_prime_UTR
TCCGGCACATACACTTTCAG+TGG 0.566331 6_1:+6349235 None:intergenic
CTAAGAATGGAAGATTGGGA+TGG 0.569292 6_1:-6349153 Msa0871470:exon
CCTACACAACATTGGCACTC+CGG 0.573371 6_1:+6349217 None:intergenic
AAGAAGAAACAAGCACTACA+TGG 0.574532 6_1:+6350393 None:intergenic
GGACCAATTGTGTATAGAGA+AGG 0.575794 6_1:+6349635 None:intergenic
GAGATAAAGGAAAGAAGATG+AGG 0.578725 6_1:-6349070 Msa0871470:three_prime_UTR
ACCACTGAAAGTGTATGTGC+CGG 0.582994 6_1:-6349236 Msa0871470:CDS
ACTGATTAATGAATTGATGG+TGG 0.584937 6_1:-6349093 Msa0871470:three_prime_UTR
AAAATCATTGAAACCATCAA+AGG 0.587289 6_1:+6350665 None:intergenic
GATAGAATTTATGACTGAAG+TGG 0.596409 6_1:-6349747 Msa0871470:CDS
CTGATTAATGAATTGATGGT+GGG 0.598725 6_1:-6349092 Msa0871470:three_prime_UTR
CCGGAGTGCCAATGTTGTGT+AGG 0.599133 6_1:-6349217 Msa0871470:CDS
ACCTTTGAGACCATACCAGA+TGG 0.602303 6_1:-6350642 Msa0871470:CDS
AGAATCCGCCGATTGAAGGA+TGG 0.612726 6_1:+6349282 None:intergenic
TTGAACCATCCTTCAATCGG+CGG 0.615363 6_1:-6349287 Msa0871470:CDS
GGCGGATTCTTGACTCATTG+CGG 0.620610 6_1:-6349269 Msa0871470:CDS
TAAATGATATTACCTTTGAG+TGG 0.622417 6_1:+6350327 None:intergenic
TACCAATGTAAAGAGAGAAG+AGG 0.629268 6_1:-6349123 Msa0871470:three_prime_UTR
AATGGTCAACTACCACTCAA+AGG 0.630455 6_1:-6350339 Msa0871470:intron
AAATTGTTAGAGTTTGCTTG+GGG 0.637062 6_1:-6349452 Msa0871470:CDS
TTAACTTCAATGGAAGGTGA+TGG 0.643803 6_1:-6350618 Msa0871470:CDS
ATAGAGGCCTAATAGCAAGT+TGG 0.652566 6_1:-6349328 Msa0871470:CDS
GAAACAAAGCAAGTTACTGG+AGG 0.675827 6_1:+6350483 None:intergenic
CTTGGACAAAGTGATCAATG+AGG 0.725106 6_1:-6348979 Msa0871470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAACAAATGGATATT+TGG - chr6_1:6349736-6349755 Msa0871470:CDS 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG - chr6_1:6349784-6349803 Msa0871470:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG - chr6_1:6350097-6350116 Msa0871470:intron 20.0%
!! TTATGAAACAAATGGATATT+TGG - chr6_1:6349736-6349755 Msa0871470:CDS 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG - chr6_1:6349784-6349803 Msa0871470:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG - chr6_1:6350097-6350116 Msa0871470:intron 20.0%
!! ATTGTATTCAGCTTTAACAA+AGG + chr6_1:6348878-6348897 None:intergenic 25.0%
! AAAATCATTGAAACCATCAA+AGG + chr6_1:6348935-6348954 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG - chr6_1:6349045-6349064 Msa0871470:three_prime_UTR 25.0%
! TAAATGATATTACCTTTGAG+TGG + chr6_1:6349273-6349292 None:intergenic 25.0%
!! TGTATCAAGGTTCTTTAAAA+AGG - chr6_1:6349357-6349376 Msa0871470:CDS 25.0%
! CAAATGCGATTATAAATGTT+CGG + chr6_1:6349402-6349421 None:intergenic 25.0%
!! GAATGTGATTTTATACTTCA+AGG - chr6_1:6349678-6349697 Msa0871470:CDS 25.0%
!!! AATCTAAAGTTTTTCAAACC+TGG + chr6_1:6349782-6349801 None:intergenic 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG + chr6_1:6349815-6349834 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG + chr6_1:6349839-6349858 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG - chr6_1:6349851-6349870 Msa0871470:CDS 25.0%
! CATCTTTAGATTCTAATCTT+TGG - chr6_1:6350026-6350045 Msa0871470:intron 25.0%
! AAGATACTAAATGTCTTGAA+TGG - chr6_1:6350053-6350072 Msa0871470:intron 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG - chr6_1:6350185-6350204 Msa0871470:intron 25.0%
! TAGCAAATAATTCTACTGTT+AGG + chr6_1:6350427-6350446 None:intergenic 25.0%
!! GTAGAATTATTTGCTAAGAA+TGG - chr6_1:6350431-6350450 Msa0871470:CDS 25.0%
! GAAACTGATTAATGAATTGA+TGG - chr6_1:6350501-6350520 Msa0871470:CDS 25.0%
!! ATTGTATTCAGCTTTAACAA+AGG + chr6_1:6348878-6348897 None:intergenic 25.0%
! AAAATCATTGAAACCATCAA+AGG + chr6_1:6348935-6348954 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG - chr6_1:6349045-6349064 Msa0871470:three_prime_UTR 25.0%
! TAAATGATATTACCTTTGAG+TGG + chr6_1:6349273-6349292 None:intergenic 25.0%
!! TGTATCAAGGTTCTTTAAAA+AGG - chr6_1:6349357-6349376 Msa0871470:CDS 25.0%
! CAAATGCGATTATAAATGTT+CGG + chr6_1:6349402-6349421 None:intergenic 25.0%
!! GAATGTGATTTTATACTTCA+AGG - chr6_1:6349678-6349697 Msa0871470:CDS 25.0%
!!! AATCTAAAGTTTTTCAAACC+TGG + chr6_1:6349782-6349801 None:intergenic 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG + chr6_1:6349815-6349834 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG + chr6_1:6349839-6349858 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG - chr6_1:6349851-6349870 Msa0871470:CDS 25.0%
! CATCTTTAGATTCTAATCTT+TGG - chr6_1:6350026-6350045 Msa0871470:intron 25.0%
! AAGATACTAAATGTCTTGAA+TGG - chr6_1:6350053-6350072 Msa0871470:intron 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG - chr6_1:6350185-6350204 Msa0871470:intron 25.0%
! TAGCAAATAATTCTACTGTT+AGG + chr6_1:6350427-6350446 None:intergenic 25.0%
!! GTAGAATTATTTGCTAAGAA+TGG - chr6_1:6350431-6350450 Msa0871470:CDS 25.0%
! GAAACTGATTAATGAATTGA+TGG - chr6_1:6350501-6350520 Msa0871470:CDS 25.0%
AAACGTTTGCTCAAATCAAA+GGG - chr6_1:6348901-6348920 Msa0871470:three_prime_UTR 30.0%
ATGGCGAAAATAGAACAATT+GGG + chr6_1:6349188-6349207 None:intergenic 30.0%
ATTCCGAAATTGTTTCAGAA+TGG - chr6_1:6349240-6349259 Msa0871470:CDS 30.0%
!! TGACCATTCTGAAACAATTT+CGG + chr6_1:6349246-6349265 None:intergenic 30.0%
! ACATCTCTTTGGAAGAAAAA+GGG + chr6_1:6349300-6349319 None:intergenic 30.0%
!! NNNNNNNGGTGGTATTGACT+TGG - chr6_1:6349622-6349641 Msa0871470:CDS 30.0%
!! NNNNNNGGTGGTATTGACTT+GGG - chr6_1:6349623-6349642 Msa0871470:CDS 30.0%
TTAAGAAGCTAAATTACCTC+AGG + chr6_1:6349650-6349669 None:intergenic 30.0%
ATTTGGACACTATAGTTGAT+TGG - chr6_1:6349753-6349772 Msa0871470:CDS 30.0%
AGGATCTTCCTACTTTAATT+AGG - chr6_1:6349804-6349823 Msa0871470:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG - chr6_1:6349850-6349869 Msa0871470:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG - chr6_1:6349959-6349978 Msa0871470:intron 30.0%
TGACTTAAAAACGAAGCAAA+CGG + chr6_1:6349986-6350005 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG - chr6_1:6350143-6350162 Msa0871470:intron 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG - chr6_1:6350144-6350163 Msa0871470:intron 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG - chr6_1:6350145-6350164 Msa0871470:intron 30.0%
GTGAATGAAATTTCAGATAG+AGG - chr6_1:6350253-6350272 Msa0871470:intron 30.0%
! ATTTGCTAAGAATGGAAGAT+TGG - chr6_1:6350439-6350458 Msa0871470:CDS 30.0%
TTTGCTAAGAATGGAAGATT+GGG - chr6_1:6350440-6350459 Msa0871470:CDS 30.0%
ACTGATTAATGAATTGATGG+TGG - chr6_1:6350504-6350523 Msa0871470:CDS 30.0%
! CTGATTAATGAATTGATGGT+GGG - chr6_1:6350505-6350524 Msa0871470:CDS 30.0%
TGGTTGTTCATATATGAACT+TGG - chr6_1:6350600-6350619 Msa0871470:intron 30.0%
AAACGTTTGCTCAAATCAAA+GGG - chr6_1:6348901-6348920 Msa0871470:three_prime_UTR 30.0%
ATGGCGAAAATAGAACAATT+GGG + chr6_1:6349188-6349207 None:intergenic 30.0%
ATTCCGAAATTGTTTCAGAA+TGG - chr6_1:6349240-6349259 Msa0871470:CDS 30.0%
!! TGACCATTCTGAAACAATTT+CGG + chr6_1:6349246-6349265 None:intergenic 30.0%
! ACATCTCTTTGGAAGAAAAA+GGG + chr6_1:6349300-6349319 None:intergenic 30.0%
!! NNNNNNNGGTGGTATTGACT+TGG - chr6_1:6349622-6349641 Msa0871470:CDS 30.0%
!! NNNNNNGGTGGTATTGACTT+GGG - chr6_1:6349623-6349642 Msa0871470:CDS 30.0%
TTAAGAAGCTAAATTACCTC+AGG + chr6_1:6349650-6349669 None:intergenic 30.0%
ATTTGGACACTATAGTTGAT+TGG - chr6_1:6349753-6349772 Msa0871470:CDS 30.0%
AGGATCTTCCTACTTTAATT+AGG - chr6_1:6349804-6349823 Msa0871470:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG - chr6_1:6349850-6349869 Msa0871470:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG - chr6_1:6349959-6349978 Msa0871470:intron 30.0%
TGACTTAAAAACGAAGCAAA+CGG + chr6_1:6349986-6350005 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG - chr6_1:6350143-6350162 Msa0871470:intron 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG - chr6_1:6350144-6350163 Msa0871470:intron 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG - chr6_1:6350145-6350164 Msa0871470:intron 30.0%
GTGAATGAAATTTCAGATAG+AGG - chr6_1:6350253-6350272 Msa0871470:intron 30.0%
! ATTTGCTAAGAATGGAAGAT+TGG - chr6_1:6350439-6350458 Msa0871470:CDS 30.0%
TTTGCTAAGAATGGAAGATT+GGG - chr6_1:6350440-6350459 Msa0871470:CDS 30.0%
ACTGATTAATGAATTGATGG+TGG - chr6_1:6350504-6350523 Msa0871470:CDS 30.0%
! CTGATTAATGAATTGATGGT+GGG - chr6_1:6350505-6350524 Msa0871470:CDS 30.0%
TGGTTGTTCATATATGAACT+TGG - chr6_1:6350600-6350619 Msa0871470:intron 30.0%
CAAACGTTTGCTCAAATCAA+AGG - chr6_1:6348900-6348919 Msa0871470:three_prime_UTR 35.0%
! TTGAAACCATCAAAGGCTTT+TGG + chr6_1:6348928-6348947 None:intergenic 35.0%
TGAAGTTAAACCATCTGGTA+TGG + chr6_1:6348968-6348987 None:intergenic 35.0%
! ACCAGATGGTTTAACTTCAA+TGG - chr6_1:6348969-6348988 Msa0871470:three_prime_UTR 35.0%
TCCATTGAAGTTAAACCATC+TGG + chr6_1:6348973-6348992 None:intergenic 35.0%
! GATGGTTTAACTTCAATGGA+AGG - chr6_1:6348973-6348992 Msa0871470:three_prime_UTR 35.0%
TTAACTTCAATGGAAGGTGA+TGG - chr6_1:6348979-6348998 Msa0871470:three_prime_UTR 35.0%
TCAGAAACAAAGCAAGTTAC+TGG + chr6_1:6349120-6349139 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG + chr6_1:6349153-6349172 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG + chr6_1:6349189-6349208 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG + chr6_1:6349207-6349226 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG - chr6_1:6349206-6349225 Msa0871470:CDS 35.0%
! CATCTCTTTGGAAGAAAAAG+GGG + chr6_1:6349299-6349318 None:intergenic 35.0%
! CACATCTCTTTGGAAGAAAA+AGG + chr6_1:6349301-6349320 None:intergenic 35.0%
TGTATAATCGCAACCAAATG+CGG + chr6_1:6349437-6349456 None:intergenic 35.0%
GATGCGAGTTATGAAACAAA+TGG - chr6_1:6349728-6349747 Msa0871470:CDS 35.0%
ACTATAGTTGATTGGATTCC+AGG - chr6_1:6349761-6349780 Msa0871470:CDS 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG + chr6_1:6350176-6350195 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG - chr6_1:6350176-6350195 Msa0871470:intron 35.0%
GGCCTAATAATCCACAAAAA+AGG + chr6_1:6350190-6350209 None:intergenic 35.0%
AAAAATGGCCTACACAACAT+TGG + chr6_1:6350391-6350410 None:intergenic 35.0%
GGTAGTTGATCAGCAAAAAA+TGG + chr6_1:6350406-6350425 None:intergenic 35.0%
TACCAATGTAAAGAGAGAAG+AGG - chr6_1:6350474-6350493 Msa0871470:CDS 35.0%
TACCTCTTCTCTCTTTACAT+TGG + chr6_1:6350479-6350498 None:intergenic 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr6_1:6350527-6350546 Msa0871470:CDS 35.0%
CAAACGTTTGCTCAAATCAA+AGG - chr6_1:6348900-6348919 Msa0871470:three_prime_UTR 35.0%
! TTGAAACCATCAAAGGCTTT+TGG + chr6_1:6348928-6348947 None:intergenic 35.0%
TGAAGTTAAACCATCTGGTA+TGG + chr6_1:6348968-6348987 None:intergenic 35.0%
! ACCAGATGGTTTAACTTCAA+TGG - chr6_1:6348969-6348988 Msa0871470:three_prime_UTR 35.0%
TCCATTGAAGTTAAACCATC+TGG + chr6_1:6348973-6348992 None:intergenic 35.0%
! GATGGTTTAACTTCAATGGA+AGG - chr6_1:6348973-6348992 Msa0871470:three_prime_UTR 35.0%
TTAACTTCAATGGAAGGTGA+TGG - chr6_1:6348979-6348998 Msa0871470:three_prime_UTR 35.0%
TCAGAAACAAAGCAAGTTAC+TGG + chr6_1:6349120-6349139 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG + chr6_1:6349153-6349172 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG + chr6_1:6349189-6349208 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG + chr6_1:6349207-6349226 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG - chr6_1:6349206-6349225 Msa0871470:CDS 35.0%
! CATCTCTTTGGAAGAAAAAG+GGG + chr6_1:6349299-6349318 None:intergenic 35.0%
! CACATCTCTTTGGAAGAAAA+AGG + chr6_1:6349301-6349320 None:intergenic 35.0%
TGTATAATCGCAACCAAATG+CGG + chr6_1:6349437-6349456 None:intergenic 35.0%
GATGCGAGTTATGAAACAAA+TGG - chr6_1:6349728-6349747 Msa0871470:CDS 35.0%
ACTATAGTTGATTGGATTCC+AGG - chr6_1:6349761-6349780 Msa0871470:CDS 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG + chr6_1:6350176-6350195 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG - chr6_1:6350176-6350195 Msa0871470:intron 35.0%
GGCCTAATAATCCACAAAAA+AGG + chr6_1:6350190-6350209 None:intergenic 35.0%
AAAAATGGCCTACACAACAT+TGG + chr6_1:6350391-6350410 None:intergenic 35.0%
GGTAGTTGATCAGCAAAAAA+TGG + chr6_1:6350406-6350425 None:intergenic 35.0%
TACCAATGTAAAGAGAGAAG+AGG - chr6_1:6350474-6350493 Msa0871470:CDS 35.0%
TACCTCTTCTCTCTTTACAT+TGG + chr6_1:6350479-6350498 None:intergenic 35.0%
GAGATAAAGGAAAGAAGATG+AGG - chr6_1:6350527-6350546 Msa0871470:CDS 35.0%
GCAAAACTACTTCACCTAAG+AGG - chr6_1:6348841-6348860 Msa0871470:three_prime_UTR 40.0%
AGGTTATGTGAAAGCCTCTT+AGG + chr6_1:6348858-6348877 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG + chr6_1:6349117-6349136 None:intergenic 40.0%
AATGGTCAACTACCACTCAA+AGG - chr6_1:6349258-6349277 Msa0871470:CDS 40.0%
CACACATACACACATCTCTT+TGG + chr6_1:6349311-6349330 None:intergenic 40.0%
AAAGGTCCTCAAACGCAATA+TGG - chr6_1:6349375-6349394 Msa0871470:CDS 40.0%
GGACCAATTGTGTATAGAGA+AGG + chr6_1:6349965-6349984 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_1:6350202-6350221 Msa0871470:intron 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6_1:6350269-6350288 Msa0871470:intron 40.0%
TGGTTCAACACTTTCTCTTG+CGG + chr6_1:6350298-6350317 None:intergenic 40.0%
GTGTTGAACCATCCTTCAAT+CGG - chr6_1:6350307-6350326 Msa0871470:intron 40.0%
CTAAGAATGGAAGATTGGGA+TGG - chr6_1:6350444-6350463 Msa0871470:CDS 40.0%
!! GAATTGATGGTGGGAGATAA+AGG - chr6_1:6350514-6350533 Msa0871470:CDS 40.0%
AGGAAAGAAGATGAGGCAAA+AGG - chr6_1:6350534-6350553 Msa0871470:CDS 40.0%
CTTGGACAAAGTGATCAATG+AGG - chr6_1:6350618-6350637 Msa0871470:CDS 40.0%
GCAAAACTACTTCACCTAAG+AGG - chr6_1:6348841-6348860 Msa0871470:three_prime_UTR 40.0%
AGGTTATGTGAAAGCCTCTT+AGG + chr6_1:6348858-6348877 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG + chr6_1:6349117-6349136 None:intergenic 40.0%
AATGGTCAACTACCACTCAA+AGG - chr6_1:6349258-6349277 Msa0871470:CDS 40.0%
CACACATACACACATCTCTT+TGG + chr6_1:6349311-6349330 None:intergenic 40.0%
AAAGGTCCTCAAACGCAATA+TGG - chr6_1:6349375-6349394 Msa0871470:CDS 40.0%
GGACCAATTGTGTATAGAGA+AGG + chr6_1:6349965-6349984 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_1:6350202-6350221 Msa0871470:intron 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6_1:6350269-6350288 Msa0871470:intron 40.0%
TGGTTCAACACTTTCTCTTG+CGG + chr6_1:6350298-6350317 None:intergenic 40.0%
GTGTTGAACCATCCTTCAAT+CGG - chr6_1:6350307-6350326 Msa0871470:intron 40.0%
CTAAGAATGGAAGATTGGGA+TGG - chr6_1:6350444-6350463 Msa0871470:CDS 40.0%
!! GAATTGATGGTGGGAGATAA+AGG - chr6_1:6350514-6350533 Msa0871470:CDS 40.0%
AGGAAAGAAGATGAGGCAAA+AGG - chr6_1:6350534-6350553 Msa0871470:CDS 40.0%
CTTGGACAAAGTGATCAATG+AGG - chr6_1:6350618-6350637 Msa0871470:CDS 40.0%
AAGGGTCCAAAAGCCTTTGA+TGG - chr6_1:6348919-6348938 Msa0871470:three_prime_UTR 45.0%
!! ACCTTTGAGACCATACCAGA+TGG - chr6_1:6348955-6348974 Msa0871470:three_prime_UTR 45.0%
ACCATCTGGTATGGTCTCAA+AGG + chr6_1:6348959-6348978 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG - chr6_1:6349084-6349103 Msa0871470:three_prime_UTR 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG - chr6_1:6349210-6349229 Msa0871470:CDS 45.0%
GTGTGTGTGTGTGTGTATCA+AGG - chr6_1:6349344-6349363 Msa0871470:CDS 45.0%
TTCGGTCCATATTGCGTTTG+AGG + chr6_1:6349384-6349403 None:intergenic 45.0%
! TGATCTTGTCATTGGTGGCT+CGG - chr6_1:6350210-6350229 Msa0871470:intron 45.0%
TTGAACCATCCTTCAATCGG+CGG - chr6_1:6350310-6350329 Msa0871470:intron 45.0%
GATTCTTGACTCATTGCGGA+TGG - chr6_1:6350332-6350351 Msa0871470:intron 45.0%
! ACCACTGAAAGTGTATGTGC+CGG - chr6_1:6350361-6350380 Msa0871470:CDS 45.0%
TGCCTTCTTCTTCAACTCCA+TGG + chr6_1:6350560-6350579 None:intergenic 45.0%
GTTGAAGAAGAAGGCAGATG+AGG - chr6_1:6350564-6350583 Msa0871470:intron 45.0%
GCAGATGAGGACACAAGATT+TGG - chr6_1:6350577-6350596 Msa0871470:intron 45.0%
GATGAGGACACAAGATTTGG+TGG - chr6_1:6350580-6350599 Msa0871470:intron 45.0%
AAGGGTCCAAAAGCCTTTGA+TGG - chr6_1:6348919-6348938 Msa0871470:three_prime_UTR 45.0%
!! ACCTTTGAGACCATACCAGA+TGG - chr6_1:6348955-6348974 Msa0871470:three_prime_UTR 45.0%
ACCATCTGGTATGGTCTCAA+AGG + chr6_1:6348959-6348978 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG - chr6_1:6349084-6349103 Msa0871470:three_prime_UTR 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG - chr6_1:6349210-6349229 Msa0871470:CDS 45.0%
GTGTGTGTGTGTGTGTATCA+AGG - chr6_1:6349344-6349363 Msa0871470:CDS 45.0%
TTCGGTCCATATTGCGTTTG+AGG + chr6_1:6349384-6349403 None:intergenic 45.0%
! TGATCTTGTCATTGGTGGCT+CGG - chr6_1:6350210-6350229 Msa0871470:intron 45.0%
TTGAACCATCCTTCAATCGG+CGG - chr6_1:6350310-6350329 Msa0871470:intron 45.0%
GATTCTTGACTCATTGCGGA+TGG - chr6_1:6350332-6350351 Msa0871470:intron 45.0%
! ACCACTGAAAGTGTATGTGC+CGG - chr6_1:6350361-6350380 Msa0871470:CDS 45.0%
TGCCTTCTTCTTCAACTCCA+TGG + chr6_1:6350560-6350579 None:intergenic 45.0%
GTTGAAGAAGAAGGCAGATG+AGG - chr6_1:6350564-6350583 Msa0871470:intron 45.0%
GCAGATGAGGACACAAGATT+TGG - chr6_1:6350577-6350596 Msa0871470:intron 45.0%
GATGAGGACACAAGATTTGG+TGG - chr6_1:6350580-6350599 Msa0871470:intron 45.0%
GAAGTTGCATCAGCCGCATT+TGG - chr6_1:6349421-6349440 Msa0871470:CDS 50.0%
!! TGGTATTGACTTGGGACCTG+AGG - chr6_1:6349631-6349650 Msa0871470:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_1:6350205-6350224 Msa0871470:intron 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_1:6350211-6350230 None:intergenic 50.0%
!! GCGGACACCAACTTGCTATT+AGG + chr6_1:6350279-6350298 None:intergenic 50.0%
! AGAATCCGCCGATTGAAGGA+TGG + chr6_1:6350318-6350337 None:intergenic 50.0%
! GTCAAGAATCCGCCGATTGA+AGG + chr6_1:6350322-6350341 None:intergenic 50.0%
! GGCGGATTCTTGACTCATTG+CGG - chr6_1:6350328-6350347 Msa0871470:intron 50.0%
TCCGGCACATACACTTTCAG+TGG + chr6_1:6350365-6350384 None:intergenic 50.0%
CCTACACAACATTGGCACTC+CGG + chr6_1:6350383-6350402 None:intergenic 50.0%
GAAGATGAGGCAAAAGGCCA+TGG - chr6_1:6350540-6350559 Msa0871470:CDS 50.0%
GGCCATGGAGTTGAAGAAGA+AGG - chr6_1:6350555-6350574 Msa0871470:intron 50.0%
GAAGTTGCATCAGCCGCATT+TGG - chr6_1:6349421-6349440 Msa0871470:CDS 50.0%
!! TGGTATTGACTTGGGACCTG+AGG - chr6_1:6349631-6349650 Msa0871470:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_1:6350205-6350224 Msa0871470:intron 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_1:6350211-6350230 None:intergenic 50.0%
!! GCGGACACCAACTTGCTATT+AGG + chr6_1:6350279-6350298 None:intergenic 50.0%
! AGAATCCGCCGATTGAAGGA+TGG + chr6_1:6350318-6350337 None:intergenic 50.0%
! GTCAAGAATCCGCCGATTGA+AGG + chr6_1:6350322-6350341 None:intergenic 50.0%
! GGCGGATTCTTGACTCATTG+CGG - chr6_1:6350328-6350347 Msa0871470:intron 50.0%
TCCGGCACATACACTTTCAG+TGG + chr6_1:6350365-6350384 None:intergenic 50.0%
CCTACACAACATTGGCACTC+CGG + chr6_1:6350383-6350402 None:intergenic 50.0%
GAAGATGAGGCAAAAGGCCA+TGG - chr6_1:6350540-6350559 Msa0871470:CDS 50.0%
GGCCATGGAGTTGAAGAAGA+AGG - chr6_1:6350555-6350574 Msa0871470:intron 50.0%
! CCGGAGTGCCAATGTTGTGT+AGG - chr6_1:6350380-6350399 Msa0871470:CDS 55.0%
! CCGGAGTGCCAATGTTGTGT+AGG - chr6_1:6350380-6350399 Msa0871470:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 6348832 6350787 6348832 ID=Msa0871470;Name=Msa0871470
chr6_1 mRNA 6348832 6350787 6348832 ID=Msa0871470-mRNA-1;Parent=Msa0871470;Name=Msa0871470-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.5|0.33|1|0.5|0.33|3|340|374
chr6_1 exon 6348832 6349890 6348832 ID=Msa0871470-mRNA-1:exon:2016;Parent=Msa0871470-mRNA-1
chr6_1 exon 6350340 6350571 6350340 ID=Msa0871470-mRNA-1:exon:2015;Parent=Msa0871470-mRNA-1
chr6_1 exon 6350614 6350787 6350614 ID=Msa0871470-mRNA-1:exon:2014;Parent=Msa0871470-mRNA-1
chr6_1 CDS 6350614 6350787 6350614 ID=Msa0871470-mRNA-1:cds;Parent=Msa0871470-mRNA-1
chr6_1 CDS 6350340 6350571 6350340 ID=Msa0871470-mRNA-1:cds;Parent=Msa0871470-mRNA-1
chr6_1 CDS 6349172 6349890 6349172 ID=Msa0871470-mRNA-1:cds;Parent=Msa0871470-mRNA-1
chr6_1 three_prime_UTR 6348832 6349171 6348832 ID=Msa0871470-mRNA-1:three_prime_utr;Parent=Msa0871470-mRNA-1
Gene Sequence

>Msa0871470

ATGAAACTAGCAAAACTACTTCACCTAAGAGGCTTTCACATAACCTTTGTTAAAGCTGAATACAATCACAAACGTTTGCTCAAATCAAAGGGTCCAAAAGCCTTTGATGGTTTCAATGATTTTACCTTTGAGACCATACCAGATGGTTTAACTTCAATGGAAGGTGATGGTGATAACTTTTGTCACTTTTTTGGTGAACTTTTTGCTAAACTTCATGAATCTGCTACTGCTGGTTATATACCTCCAGTAACTTGCTTTGTTTCTGATTGCTATATGCCATTTACAGTAGAAGTTGCTGAAGAACATTCACTCCCAATTGTTCTATTTTCGCCATGTAGTGCTTGTTTCTTCTTGGCTGGTTTTCATATTCCGAAATTGTTTCAGAATGGTCAACTACCACTCAAAGATGCGAGTTATGAAACAAATGGATATTTGGACACTATAGTTGATTGGATTCCAGGTTTGAAAAACTTTAGATTGAAGGATCTTCCTACTTTAATTAGGACAAAAGATCCTAATGACTTGATGATAGAATTTATGACTGAAGTGGGAGATAAATGTCACAAAGCTTCTGCTATTGTTTTCAACACTTCTTATGAACTTGAGAGTGATGTTATGAATGCTCTTAGTTCTATATTTCCTTCTCTATACACAATTGGTCCGTTTGCTTCGTTTTTAAGTCAAAGTTCGCAAAATCACTTGACATCTTTAGATTCTAATCTTTGGAAAGAAGATACTAAATGTCTTGAATGGCTTGAATCAAAAGAATCAAAATCTGTTGTTTATGTAAATTTTGGCAGCATCATAGTTATGTCTCAAGAGAAATTGTTAGAGTTTGCTTGGGGTTTAGCCAACAGCAAGAAACCTTTTTTGTGGATTATTAGGCCTGATCTTGTCATTGGTGGCTCGGTTGTTTTGTCATCAGAGTTTGTGAATGAAATTTCAGATAGAGGCCTAATAGCAAGTTGGTGTCCGCAAGAGAAAGTGTTGAACCATCCTTCAATCGGCGGATTCTTGACTCATTGCGGATGGAACTCAACCACTGAAAGTGTATGTGCCGGAGTGCCAATGTTGTGTAGGCCATTTTTTGCTGATCAACTACCTAACAGTAGAATTATTTGCTAA

Protein sequence

>Msa0871470

MKLAKLLHLRGFHITFVKAEYNHKRLLKSKGPKAFDGFNDFTFETIPDGLTSMEGDGDNFCHFFGELFAKLHESATAGYIPPVTCFVSDCYMPFTVEVAEEHSLPIVLFSPCSACFFLAGFHIPKLFQNGQLPLKDASYETNGYLDTIVDWIPGLKNFRLKDLPTLIRTKDPNDLMIEFMTEVGDKCHKASAIVFNTSYELESDVMNALSSIFPSLYTIGPFASFLSQSSQNHLTSLDSNLWKEDTKCLEWLESKESKSVVYVNFGSIIVMSQEKLLEFAWGLANSKKPFLWIIRPDLVIGGSVVLSSEFVNEISDRGLIASWCPQEKVLNHPSIGGFLTHCGWNSTTESVCAGVPMLCRPFFADQLPNSRIIC*