AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1014350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014350 MtrunA17_Chr7g0226681 96.679 271 8 1 1 270 14 284 0.0 540
Msa1014350 MtrunA17_Chr6g0488521 40.206 194 112 1 39 228 95 288 6.76e-45 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1014350 AT3G01660.1 63.985 261 88 3 11 269 17 273 2.45e-121 347
Msa1014350 AT4G29590.1 39.896 193 112 1 41 229 106 298 4.24e-43 149

Find 111 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATACATGATGATTAAAT+TGG 0.124999 7_1:-22946384 Msa1014350:exon
ATAAGCAATAACTGCATAAA+AGG 0.169260 7_1:+22946419 None:intergenic
GTTTAATGTGCAAACTATTT+TGG 0.185014 7_1:+22947778 None:intergenic
CATATTAACAAATTATAATA+TGG 0.189350 7_1:-22945221 Msa1014350:three_prime_UTR
TTGTATACCATATGCATTAT+TGG 0.206333 7_1:+22947936 None:intergenic
CCCTTCTCTCCATGCACTTA+TGG 0.211437 7_1:+22946602 None:intergenic
TGTAGCTGAAATGAAATTAA+AGG 0.219999 7_1:+22948008 None:intergenic
TGTATACCATATGCATTATT+GGG 0.235224 7_1:+22947937 None:intergenic
TTTATGCAGTTATTGCTTAT+AGG 0.245402 7_1:-22946416 Msa1014350:CDS
ATCTTGGATAAGGTTCAATT+TGG 0.247707 7_1:+22947682 None:intergenic
TTCTTGATCTCATGAGTTCT+TGG 0.266453 7_1:-22947556 Msa1014350:CDS
ATGAGAGTAAAGAGTAAATT+AGG 0.280613 7_1:+22945241 Msa1014340:intron
TGGAGTTTGGAGTAGCTATT+TGG 0.284572 7_1:+22947853 None:intergenic
AGGTATTTGCAGAGGTGTTT+AGG 0.295860 7_1:-22946686 Msa1014350:CDS
AGCACGGTCATGAAGCTCTT+TGG 0.299546 7_1:-22946462 Msa1014350:CDS
ATGAAATTAAAGGCATCTTT+TGG 0.317779 7_1:+22948018 None:intergenic
GTTGGATTACTTTGTCATAA+AGG 0.320022 7_1:-22947450 Msa1014350:CDS
GATAAATCTATTGATGGTTT+CGG 0.331434 7_1:-22945583 Msa1014350:three_prime_UTR
ATGCATAAAACTCTTTATCT+TGG 0.343449 7_1:+22947666 None:intergenic
TGGCTTGCATTGTTGGAGTT+TGG 0.349707 7_1:+22947840 None:intergenic
AAAACTCTTTATCTTGGATA+AGG 0.357532 7_1:+22947672 None:intergenic
TGCAGATTGGCTTGCATTGT+TGG 0.357995 7_1:+22947833 None:intergenic
CTGAAGATTGTTGATTGGTT+TGG 0.361867 7_1:+22947747 None:intergenic
ACCTCTGCAAGCAAGACTTT+TGG 0.364489 7_1:-22945489 Msa1014350:three_prime_UTR
GAGAAGGGACTACTTATAGT+AGG 0.371810 7_1:-22946587 Msa1014350:CDS
CTGTGAAACCTTCCACTGAT+TGG 0.374068 7_1:+22946541 None:intergenic
CCAATTTAATCATCATGTAT+TGG 0.377264 7_1:+22946384 None:intergenic
AATCTTCAACACTTTCAGTT+AGG 0.394451 7_1:-22945613 Msa1014350:three_prime_UTR
ATCTAACCTTCTCTGGTTGT+TGG 0.398077 7_1:+22947348 None:intergenic
TCCCTCCGTTCTAAGTGTTA+AGG 0.399767 7_1:-22945342 Msa1014350:three_prime_UTR
TAACAAATCTTTACAGAGAA+AGG 0.406271 7_1:-22947598 Msa1014350:CDS
CCCTCCGGCTCCCGGAGAAA+AGG 0.407505 7_1:-22946137 Msa1014350:three_prime_UTR
GCAATATATCTAACCTTCTC+TGG 0.413293 7_1:+22947341 None:intergenic
TTAGAACGGAGGGAGTATAT+AGG 0.414797 7_1:+22945351 Msa1014340:intron
TCTTGATCTCATGAGTTCTT+GGG 0.417962 7_1:-22947555 Msa1014350:CDS
GGAGTTTGGAGTAGCTATTT+GGG 0.425650 7_1:+22947854 None:intergenic
ATTGTCAGTCATTAAATGCC+TGG 0.426852 7_1:+22945525 Msa1014340:three_prime_UTR
AGATCAAGAATCTCCATGTT+AGG 0.434619 7_1:+22947569 None:intergenic
ATCTATTGATGGTTTCGGAT+TGG 0.440989 7_1:-22945578 Msa1014350:three_prime_UTR
TAGAACGGAGGGAGTATATA+GGG 0.443298 7_1:+22945352 Msa1014340:intron
CAATACATGATGATTAAATT+GGG 0.445819 7_1:-22946383 Msa1014350:exon
CCTCCGGCTCCCGGAGAAAA+GGG 0.449500 7_1:-22946136 Msa1014350:three_prime_UTR
GGTGTTATCCCTCCGGCTCC+CGG 0.451357 7_1:-22946145 Msa1014350:three_prime_UTR
AGATGAGATAAATCTATTGA+TGG 0.451747 7_1:-22945589 Msa1014350:three_prime_UTR
GCCAACTGAAGATTGTTGAT+TGG 0.452329 7_1:+22947742 None:intergenic
GGCTCTGATAATTCGAAGTT+CGG 0.455188 7_1:-22946115 Msa1014350:three_prime_UTR
TCACCATAACTTAATTAGCT+TGG 0.455587 7_1:-22946181 Msa1014350:three_prime_UTR
GTAAAATACAAAAGAGTGGT+AGG 0.461440 7_1:-22947512 Msa1014350:CDS
AAGAACTTGCAAAGAATTCA+AGG 0.466708 7_1:-22947472 Msa1014350:CDS
AAGCAATCAATGGTTGTTAG+AGG 0.469023 7_1:+22947964 None:intergenic
AGACCAAGCTAATTAAGTTA+TGG 0.472080 7_1:+22946178 None:intergenic
GTGGTAGGGCATGGGATGAA+TGG 0.478315 7_1:-22947497 Msa1014350:CDS
CCTTTGCTATCACTATGTAT+TGG 0.480975 7_1:-22945677 Msa1014350:three_prime_UTR
ATATTAACAAATTATAATAT+GGG 0.481105 7_1:-22945220 Msa1014350:three_prime_UTR
CTTGCTTTCACAACATGTCC+AGG 0.481626 7_1:-22945649 Msa1014350:three_prime_UTR
TAAGCAATAACTGCATAAAA+GGG 0.492787 7_1:+22946420 None:intergenic
ACTTGCAAAGAATTCAAGGT+TGG 0.493288 7_1:-22947468 Msa1014350:CDS
CTCACTATGAACACCCCTCC+TGG 0.504729 7_1:+22946654 None:intergenic
TACAAAAGAGTGGTAGGGCA+TGG 0.506435 7_1:-22947506 Msa1014350:CDS
CAAATTATAATATGGGATGG+AGG 0.512266 7_1:-22945213 Msa1014350:three_prime_UTR
AATATGAAAAGTGATAGAAA+TGG 0.517170 7_1:-22946284 Msa1014350:three_prime_UTR
GCCATAAGTGCATGGAGAGA+AGG 0.518478 7_1:-22946603 Msa1014350:CDS
GGAAGGTTTCACAGAGGCAG+AGG 0.525489 7_1:-22946532 Msa1014350:CDS
GTAGCTATTTGGGTGAAAAG+TGG 0.533984 7_1:+22947864 None:intergenic
ATGGTTGTTAGAGGATAGAG+AGG 0.534094 7_1:+22947973 None:intergenic
TAGTGGTGACTTGTCATCAA+TGG 0.540340 7_1:+22946488 None:intergenic
CCATAAGTGCATGGAGAGAA+GGG 0.541068 7_1:-22946602 Msa1014350:CDS
GATATGATGCTGATTTCTGC+AGG 0.542308 7_1:+22945415 Msa1014340:intron
TTATAGTAGGGTGCGACTTG+TGG 0.542539 7_1:-22946574 Msa1014350:CDS
GTATACCATATGCATTATTG+GGG 0.543687 7_1:+22947938 None:intergenic
GACTTGTCATCAATGGTAGT+TGG 0.545370 7_1:+22946495 None:intergenic
AAATTATAATATGGGATGGA+GGG 0.545773 7_1:-22945212 Msa1014350:three_prime_UTR
TGTGTACATGGCATGCAGAT+TGG 0.548356 7_1:+22947820 None:intergenic
CAATGACGTATCTACTTGAT+CGG 0.549901 7_1:+22945709 Msa1014340:three_prime_UTR
CAGTACTTCCAATCAGTGGA+AGG 0.551004 7_1:-22946549 Msa1014350:CDS
TTTGATGTGAGGTGTGTACA+TGG 0.553396 7_1:+22947808 None:intergenic
TAACAAATTATAATATGGGA+TGG 0.554762 7_1:-22945216 Msa1014350:three_prime_UTR
TGTGTGACTCAATTATAGTC+TGG 0.555789 7_1:-22946213 Msa1014350:three_prime_UTR
CTTGTGACTCATGTTGATGA+TGG 0.555804 7_1:-22947635 Msa1014350:CDS
AAGTCTTGCTTGCAGAGGTG+AGG 0.565273 7_1:+22945493 Msa1014340:CDS
AAAATCCTTAACACTTAGAA+CGG 0.565913 7_1:+22945337 Msa1014340:intron
ACCAATCAACAATCTTCAGT+TGG 0.566352 7_1:-22947743 Msa1014350:CDS
ACAAAAGAGTGGTAGGGCAT+GGG 0.567245 7_1:-22947505 Msa1014350:CDS
TCCTTAACACTTAGAACGGA+GGG 0.568455 7_1:+22945341 Msa1014340:intron
GTGTTTAGGTTGCTAAAACC+AGG 0.582281 7_1:-22946672 Msa1014350:CDS
TTCATGACCGTGCTCAGTAG+TGG 0.584220 7_1:+22946471 None:intergenic
TAAAATACAAAAGAGTGGTA+GGG 0.591010 7_1:-22947511 Msa1014350:CDS
AGATTCTATAAGTGATGACC+TGG 0.592870 7_1:+22945631 Msa1014340:three_prime_UTR
AGAAGGGACTACTTATAGTA+GGG 0.601293 7_1:-22946586 Msa1014350:CDS
ATGAGAAAGCCATAAGTGCA+TGG 0.601564 7_1:-22946611 Msa1014350:CDS
TGCAGGATAATGCTACACTC+TGG 0.605445 7_1:+22945432 Msa1014340:intron
TCAACATGAGTCACAAGGCG+TGG 0.605771 7_1:+22947641 None:intergenic
GGTTCAGTACTTCCAATCAG+TGG 0.616659 7_1:-22946553 Msa1014350:CDS
GCCAAAAGTCTTGCTTGCAG+AGG 0.621744 7_1:+22945488 Msa1014340:CDS
ATCCTTAACACTTAGAACGG+AGG 0.623464 7_1:+22945340 Msa1014340:intron
GTATCTCCAACAACCAGAGA+AGG 0.623557 7_1:-22947354 Msa1014350:intron
TAATTCACAGGTATTTGCAG+AGG 0.627593 7_1:-22946694 Msa1014350:intron
AGAAAGGTTGAGACCTAACA+TGG 0.633495 7_1:-22947582 Msa1014350:CDS
TAGGTTGCTAAAACCAGGAG+GGG 0.635714 7_1:-22946667 Msa1014350:CDS
CATCATCAACATGAGTCACA+AGG 0.647019 7_1:+22947636 None:intergenic
TGATGTAAAATACAAAAGAG+TGG 0.649830 7_1:-22947516 Msa1014350:CDS
CAAGTCACCACTACTGAGCA+CGG 0.656964 7_1:-22946478 Msa1014350:CDS
CCAATACATAGTGATAGCAA+AGG 0.667417 7_1:+22945677 Msa1014340:three_prime_UTR
CGAAATTTACAGTTCCGTAG+CGG 0.670919 7_1:-22945757 Msa1014350:intron
TAATTCGAAGTTCGGCCATG+AGG 0.671389 7_1:-22946107 Msa1014350:intron
TATACCATATGCATTATTGG+GGG 0.671620 7_1:+22947939 None:intergenic
TTAGTCACTACACACTCTTG+AGG 0.683380 7_1:-22946338 Msa1014350:three_prime_UTR
TTTAGGTTGCTAAAACCAGG+AGG 0.688060 7_1:-22946669 Msa1014350:CDS
TTAGGTTGCTAAAACCAGGA+GGG 0.690482 7_1:-22946668 Msa1014350:CDS
ACGTATCTACTTGATCGGCG+AGG 0.747585 7_1:+22945714 Msa1014340:three_prime_UTR
ATCAGTGGAAGGTTTCACAG+AGG 0.782577 7_1:-22946538 Msa1014350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATGGATAAAAAAATTT+AGG + chr7_1:22947158-22947177 None:intergenic 10.0%
!! CATATTAACAAATTATAATA+TGG - chr7_1:22947957-22947976 Msa1014350:five_prime_UTR 10.0%
!!! CATTTTCAATAATAAATAGT+CGG - chr7_1:22946012-22946031 Msa1014350:intron 15.0%
!!! CTTTTGTATTTTACATCATT+TGG + chr7_1:22945660-22945679 Msa1014340:three_prime_UTR 20.0%
!! CGACTATTTATTATTGAAAA+TGG + chr7_1:22946014-22946033 Msa1014340:three_prime_UTR 20.0%
!! CAATACATGATGATTAAATT+GGG - chr7_1:22946795-22946814 Msa1014350:intron 20.0%
!! AATATGAAAAGTGATAGAAA+TGG - chr7_1:22946894-22946913 Msa1014350:intron 20.0%
!!! AATGTTGTGTTTAAGATTTA+TGG + chr7_1:22947173-22947192 None:intergenic 20.0%
!! AATCTTAATCCTACAATTTA+AGG - chr7_1:22947378-22947397 Msa1014350:CDS 20.0%
!! TAACAAATTATAATATGGGA+TGG - chr7_1:22947962-22947981 Msa1014350:five_prime_UTR 20.0%
!!! ATGAAATTAAAGGCATCTTT+TGG + chr7_1:22945163-22945182 Msa1014340:intron 25.0%
! TGTAGCTGAAATGAAATTAA+AGG + chr7_1:22945173-22945192 Msa1014340:intron 25.0%
! TGTATACCATATGCATTATT+GGG + chr7_1:22945244-22945263 Msa1014340:intron 25.0%
! TTGTATACCATATGCATTAT+TGG + chr7_1:22945245-22945264 Msa1014340:intron 25.0%
!! GTTTAATGTGCAAACTATTT+TGG + chr7_1:22945403-22945422 Msa1014340:intron 25.0%
! AAAACTCTTTATCTTGGATA+AGG + chr7_1:22945509-22945528 Msa1014340:exon 25.0%
! ATGCATAAAACTCTTTATCT+TGG + chr7_1:22945515-22945534 Msa1014340:exon 25.0%
! TAACAAATCTTTACAGAGAA+AGG - chr7_1:22945580-22945599 Msa1014350:three_prime_UTR 25.0%
! TGATGTAAAATACAAAAGAG+TGG - chr7_1:22945662-22945681 Msa1014350:three_prime_UTR 25.0%
! TAAAATACAAAAGAGTGGTA+GGG - chr7_1:22945667-22945686 Msa1014350:three_prime_UTR 25.0%
!! TCGAAATTTCTCTATAGTTT+TGG + chr7_1:22945947-22945966 Msa1014340:three_prime_UTR 25.0%
! CACTAATAAAGATAATTCAC+AGG - chr7_1:22946472-22946491 Msa1014350:CDS 25.0%
! TAAGCAATAACTGCATAAAA+GGG + chr7_1:22946761-22946780 None:intergenic 25.0%
! ATAAGCAATAACTGCATAAA+AGG + chr7_1:22946762-22946781 None:intergenic 25.0%
! TTTATGCAGTTATTGCTTAT+AGG - chr7_1:22946762-22946781 Msa1014350:intron 25.0%
! CCAATTTAATCATCATGTAT+TGG + chr7_1:22946797-22946816 None:intergenic 25.0%
! CCAATACATGATGATTAAAT+TGG - chr7_1:22946794-22946813 Msa1014350:intron 25.0%
! GAACTAGATAAATTTACACA+AGG - chr7_1:22947118-22947137 Msa1014350:intron 25.0%
! AGATGAGATAAATCTATTGA+TGG - chr7_1:22947589-22947608 Msa1014350:CDS 25.0%
!! GATAAATCTATTGATGGTTT+CGG - chr7_1:22947595-22947614 Msa1014350:CDS 25.0%
! AAAATCCTTAACACTTAGAA+CGG + chr7_1:22947844-22947863 None:intergenic 25.0%
! ATGAGAGTAAAGAGTAAATT+AGG + chr7_1:22947940-22947959 None:intergenic 25.0%
! AAATTATAATATGGGATGGA+GGG - chr7_1:22947966-22947985 Msa1014350:five_prime_UTR 25.0%
TATACCATATGCATTATTGG+GGG + chr7_1:22945242-22945261 Msa1014340:intron 30.0%
GTATACCATATGCATTATTG+GGG + chr7_1:22945243-22945262 Msa1014340:intron 30.0%
!!! AATGTGCAAACTATTTTGGT+TGG + chr7_1:22945399-22945418 Msa1014340:intron 30.0%
ATCTTGGATAAGGTTCAATT+TGG + chr7_1:22945499-22945518 Msa1014340:CDS 30.0%
GTAAAATACAAAAGAGTGGT+AGG - chr7_1:22945666-22945685 Msa1014350:three_prime_UTR 30.0%
AAGAACTTGCAAAGAATTCA+AGG - chr7_1:22945706-22945725 Msa1014350:three_prime_UTR 30.0%
GTTGGATTACTTTGTCATAA+AGG - chr7_1:22945728-22945747 Msa1014350:three_prime_UTR 30.0%
TTTGAGTCTGACAATAGATA+AGG + chr7_1:22945886-22945905 Msa1014340:three_prime_UTR 30.0%
AATTTCGAACAGTTAATCGA+AGG - chr7_1:22945959-22945978 Msa1014350:intron 30.0%
TAATCGAAGGAGTAAATAGT+CGG - chr7_1:22945972-22945991 Msa1014350:intron 30.0%
ACTAATGAAAAACACGTTTG+AGG + chr7_1:22946046-22946065 Msa1014340:three_prime_UTR 30.0%
! GTGTTTTTCATTAGTCAGTT+TGG - chr7_1:22946051-22946070 Msa1014350:intron 30.0%
! GTCTTTTGCTAGTAATATCA+TGG + chr7_1:22946110-22946129 None:intergenic 30.0%
GAAGAGAATGAGAAAAATGA+AGG + chr7_1:22946936-22946955 None:intergenic 30.0%
TCACCATAACTTAATTAGCT+TGG - chr7_1:22946997-22947016 Msa1014350:intron 30.0%
AGACCAAGCTAATTAAGTTA+TGG + chr7_1:22947003-22947022 None:intergenic 30.0%
!!! TTAGCTTGGTCTCTTTTTTT+TGG - chr7_1:22947011-22947030 Msa1014350:intron 30.0%
!!! TAGCTTGGTCTCTTTTTTTT+GGG - chr7_1:22947012-22947031 Msa1014350:intron 30.0%
ACAAAACTATACTTACCTCA+TGG + chr7_1:22947089-22947108 None:intergenic 30.0%
AGTGTATTGCCTTAAATTGT+AGG + chr7_1:22947390-22947409 None:intergenic 30.0%
AATCTTCAACACTTTCAGTT+AGG - chr7_1:22947565-22947584 Msa1014350:CDS 30.0%
CAAATTATAATATGGGATGG+AGG - chr7_1:22947965-22947984 Msa1014350:five_prime_UTR 30.0%
AAGCAATCAATGGTTGTTAG+AGG + chr7_1:22945217-22945236 Msa1014340:intron 35.0%
TTATCCCCCAATAATGCATA+TGG - chr7_1:22945235-22945254 Msa1014350:three_prime_UTR 35.0%
! CTGAAGATTGTTGATTGGTT+TGG + chr7_1:22945434-22945453 Msa1014340:intron 35.0%
ACCAATCAACAATCTTCAGT+TGG - chr7_1:22945435-22945454 Msa1014350:three_prime_UTR 35.0%
!! CGTTTTGTTCTTACACAAGA+AGG - chr7_1:22945468-22945487 Msa1014350:three_prime_UTR 35.0%
AGATCAAGAATCTCCATGTT+AGG + chr7_1:22945612-22945631 Msa1014340:three_prime_UTR 35.0%
TTCTTGATCTCATGAGTTCT+TGG - chr7_1:22945622-22945641 Msa1014350:three_prime_UTR 35.0%
TCTTGATCTCATGAGTTCTT+GGG - chr7_1:22945623-22945642 Msa1014350:three_prime_UTR 35.0%
ACTTGCAAAGAATTCAAGGT+TGG - chr7_1:22945710-22945729 Msa1014350:three_prime_UTR 35.0%
GCAATATATCTAACCTTCTC+TGG + chr7_1:22945840-22945859 Msa1014340:three_prime_UTR 35.0%
GTCTGACAATAGATAAGGTT+TGG + chr7_1:22945881-22945900 Msa1014340:three_prime_UTR 35.0%
TGAACACGTTACTCTTTCTT+AGG - chr7_1:22945908-22945927 Msa1014350:intron 35.0%
! CGTTACTCTTTCTTAGGTTT+TGG - chr7_1:22945914-22945933 Msa1014350:intron 35.0%
!! ACTCTTTCTTAGGTTTTGGT+AGG - chr7_1:22945918-22945937 Msa1014350:intron 35.0%
ACTAACGAAAGACATGTTTG+TGG + chr7_1:22946078-22946097 Msa1014340:three_prime_UTR 35.0%
ACTAGCAAAAGACACACTAA+TGG - chr7_1:22946117-22946136 Msa1014350:three_prime_UTR 35.0%
ATGAAATAACTGTGATGCCA+CGG - chr7_1:22946367-22946386 Msa1014350:three_prime_UTR 35.0%
TAATTCACAGGTATTTGCAG+AGG - chr7_1:22946484-22946503 Msa1014350:CDS 35.0%
AGAAGGGACTACTTATAGTA+GGG - chr7_1:22946592-22946611 Msa1014350:CDS 35.0%
TGTGTGACTCAATTATAGTC+TGG - chr7_1:22946965-22946984 Msa1014350:intron 35.0%
AAACTTCAAAACCTCTCCAA+CGG + chr7_1:22947236-22947255 None:intergenic 35.0%
CAATGACGTATCTACTTGAT+CGG + chr7_1:22947472-22947491 None:intergenic 35.0%
CCAATACATAGTGATAGCAA+AGG + chr7_1:22947504-22947523 None:intergenic 35.0%
! CCTTTGCTATCACTATGTAT+TGG - chr7_1:22947501-22947520 Msa1014350:CDS 35.0%
AGATTCTATAAGTGATGACC+TGG + chr7_1:22947550-22947569 None:intergenic 35.0%
! ATCTATTGATGGTTTCGGAT+TGG - chr7_1:22947600-22947619 Msa1014350:CDS 35.0%
ATTGTCAGTCATTAAATGCC+TGG + chr7_1:22947656-22947675 None:intergenic 35.0%
ATGGTTGTTAGAGGATAGAG+AGG + chr7_1:22945208-22945227 Msa1014340:intron 40.0%
ATTGGGGGATAAGCAATCAA+TGG + chr7_1:22945227-22945246 Msa1014340:intron 40.0%
GTAGCTATTTGGGTGAAAAG+TGG + chr7_1:22945317-22945336 Msa1014340:intron 40.0%
! GGAGTTTGGAGTAGCTATTT+GGG + chr7_1:22945327-22945346 Msa1014340:intron 40.0%
! TGGAGTTTGGAGTAGCTATT+TGG + chr7_1:22945328-22945347 Msa1014340:intron 40.0%
TTTGATGTGAGGTGTGTACA+TGG + chr7_1:22945373-22945392 Msa1014340:intron 40.0%
!! TTGGTTGGAGTTTTGATGTG+AGG + chr7_1:22945384-22945403 Msa1014340:intron 40.0%
GCCAACTGAAGATTGTTGAT+TGG + chr7_1:22945439-22945458 Msa1014340:CDS 40.0%
CATCATCAACATGAGTCACA+AGG + chr7_1:22945545-22945564 Msa1014340:three_prime_UTR 40.0%
! CTTGTGACTCATGTTGATGA+TGG - chr7_1:22945543-22945562 Msa1014350:three_prime_UTR 40.0%
AGAAAGGTTGAGACCTAACA+TGG - chr7_1:22945596-22945615 Msa1014350:three_prime_UTR 40.0%
ATCTAACCTTCTCTGGTTGT+TGG + chr7_1:22945833-22945852 Msa1014340:three_prime_UTR 40.0%
AAGGAGTAAATAGTCGGTCT+TGG - chr7_1:22945978-22945997 Msa1014350:intron 40.0%
CCACATGAGACACATTTGAT+CGG + chr7_1:22946317-22946336 None:intergenic 40.0%
!! AGGTATTTGCAGAGGTGTTT+AGG - chr7_1:22946492-22946511 Msa1014350:CDS 40.0%
!! GTGTTTAGGTTGCTAAAACC+AGG - chr7_1:22946506-22946525 Msa1014350:CDS 40.0%
!! TTTAGGTTGCTAAAACCAGG+AGG - chr7_1:22946509-22946528 Msa1014350:CDS 40.0%
! TTAGGTTGCTAAAACCAGGA+GGG - chr7_1:22946510-22946529 Msa1014350:CDS 40.0%
ATGAGAAAGCCATAAGTGCA+TGG - chr7_1:22946567-22946586 Msa1014350:CDS 40.0%
GAGAAGGGACTACTTATAGT+AGG - chr7_1:22946591-22946610 Msa1014350:CDS 40.0%
GACTTGTCATCAATGGTAGT+TGG + chr7_1:22946686-22946705 None:intergenic 40.0%
! TAGTGGTGACTTGTCATCAA+TGG + chr7_1:22946693-22946712 None:intergenic 40.0%
TTAGTCACTACACACTCTTG+AGG - chr7_1:22946840-22946859 Msa1014350:intron 40.0%
!!! TTTTTTGGGTGTTATCCCTC+CGG - chr7_1:22947026-22947045 Msa1014350:intron 40.0%
! ATTATCAGAGCCCTTTTCTC+CGG + chr7_1:22947055-22947074 None:intergenic 40.0%
! GGCTCTGATAATTCGAAGTT+CGG - chr7_1:22947063-22947082 Msa1014350:intron 40.0%
CGAAATTTACAGTTCCGTAG+CGG - chr7_1:22947421-22947440 Msa1014350:CDS 40.0%
!! GATATGATGCTGATTTCTGC+AGG + chr7_1:22947766-22947785 None:intergenic 40.0%
! TAGAACGGAGGGAGTATATA+GGG + chr7_1:22947829-22947848 None:intergenic 40.0%
! TTAGAACGGAGGGAGTATAT+AGG + chr7_1:22947830-22947849 None:intergenic 40.0%
TCCTTAACACTTAGAACGGA+GGG + chr7_1:22947840-22947859 None:intergenic 40.0%
ATCCTTAACACTTAGAACGG+AGG + chr7_1:22947841-22947860 None:intergenic 40.0%
! TGGCTTGCATTGTTGGAGTT+TGG + chr7_1:22945341-22945360 Msa1014340:intron 45.0%
!! TGCAGATTGGCTTGCATTGT+TGG + chr7_1:22945348-22945367 Msa1014340:intron 45.0%
TGTGTACATGGCATGCAGAT+TGG + chr7_1:22945361-22945380 Msa1014340:intron 45.0%
TACAAAAGAGTGGTAGGGCA+TGG - chr7_1:22945672-22945691 Msa1014350:three_prime_UTR 45.0%
ACAAAAGAGTGGTAGGGCAT+GGG - chr7_1:22945673-22945692 Msa1014350:three_prime_UTR 45.0%
GTATCTCCAACAACCAGAGA+AGG - chr7_1:22945824-22945843 Msa1014350:intron 45.0%
CCGATCAAATGTGTCTCATG+TGG - chr7_1:22946314-22946333 Msa1014350:three_prime_UTR 45.0%
TATTTGCGACAACGCAACTG+TGG + chr7_1:22946346-22946365 None:intergenic 45.0%
TAGGTTGCTAAAACCAGGAG+GGG - chr7_1:22946511-22946530 Msa1014350:CDS 45.0%
CCATAAGTGCATGGAGAGAA+GGG - chr7_1:22946576-22946595 Msa1014350:CDS 45.0%
TTATAGTAGGGTGCGACTTG+TGG - chr7_1:22946604-22946623 Msa1014350:CDS 45.0%
GGTTCAGTACTTCCAATCAG+TGG - chr7_1:22946625-22946644 Msa1014350:CDS 45.0%
CAGTACTTCCAATCAGTGGA+AGG - chr7_1:22946629-22946648 Msa1014350:CDS 45.0%
CTGTGAAACCTTCCACTGAT+TGG + chr7_1:22946640-22946659 None:intergenic 45.0%
ATCAGTGGAAGGTTTCACAG+AGG - chr7_1:22946640-22946659 Msa1014350:CDS 45.0%
! TTATCAGAGCCCTTTTCTCC+GGG + chr7_1:22947054-22947073 None:intergenic 45.0%
TAATTCGAAGTTCGGCCATG+AGG - chr7_1:22947071-22947090 Msa1014350:intron 45.0%
!! CCAACGGTGGTTGATTCTTT+TGG + chr7_1:22947220-22947239 None:intergenic 45.0%
CCAAAAGAATCAACCACCGT+TGG - chr7_1:22947217-22947236 Msa1014350:intron 45.0%
! TTCCGTAGCGGTTTTTCTGT+GGG - chr7_1:22947433-22947452 Msa1014350:CDS 45.0%
CTTGCTTTCACAACATGTCC+AGG - chr7_1:22947529-22947548 Msa1014350:CDS 45.0%
!!! TACCGTCGAAGCTTTTTTCC+AGG - chr7_1:22947635-22947654 Msa1014350:CDS 45.0%
TGCCTGGAAAAAAGCTTCGA+CGG + chr7_1:22947640-22947659 None:intergenic 45.0%
! ACCTCTGCAAGCAAGACTTT+TGG - chr7_1:22947689-22947708 Msa1014350:CDS 45.0%
TGCAGGATAATGCTACACTC+TGG + chr7_1:22947749-22947768 None:intergenic 45.0%
! TCCCTCCGTTCTAAGTGTTA+AGG - chr7_1:22947836-22947855 Msa1014350:exon 45.0%
!! ATATTAACAAATTATAATAT+GGG - chr7_1:22947958-22947977 Msa1014350:five_prime_UTR 5.0%
TCAACATGAGTCACAAGGCG+TGG + chr7_1:22945540-22945559 Msa1014340:three_prime_UTR 50.0%
TGATGCCACGGTCTTGATTG+CGG - chr7_1:22946379-22946398 Msa1014350:exon 50.0%
GCCATAAGTGCATGGAGAGA+AGG - chr7_1:22946575-22946594 Msa1014350:CDS 50.0%
CCCTTCTCTCCATGCACTTA+TGG + chr7_1:22946579-22946598 None:intergenic 50.0%
CAAGTCACCACTACTGAGCA+CGG - chr7_1:22946700-22946719 Msa1014350:intron 50.0%
TTCATGACCGTGCTCAGTAG+TGG + chr7_1:22946710-22946729 None:intergenic 50.0%
AGCACGGTCATGAAGCTCTT+TGG - chr7_1:22946716-22946735 Msa1014350:intron 50.0%
AGAATCAACCACCGTTGGAG+AGG - chr7_1:22947222-22947241 Msa1014350:intron 50.0%
CTTCAAAACCTCTCCAACGG+TGG + chr7_1:22947233-22947252 None:intergenic 50.0%
! GTTCCGTAGCGGTTTTTCTG+TGG - chr7_1:22947432-22947451 Msa1014350:CDS 50.0%
! TCCGTAGCGGTTTTTCTGTG+GGG - chr7_1:22947434-22947453 Msa1014350:CDS 50.0%
ACGTATCTACTTGATCGGCG+AGG + chr7_1:22947467-22947486 None:intergenic 50.0%
AAGTCTTGCTTGCAGAGGTG+AGG + chr7_1:22947688-22947707 None:intergenic 50.0%
GCCAAAAGTCTTGCTTGCAG+AGG + chr7_1:22947693-22947712 None:intergenic 50.0%
GTGGTAGGGCATGGGATGAA+TGG - chr7_1:22945681-22945700 Msa1014350:three_prime_UTR 55.0%
CGACAACGCAACTGTGGTTG+AGG + chr7_1:22946340-22946359 None:intergenic 55.0%
CTCACTATGAACACCCCTCC+TGG + chr7_1:22946527-22946546 None:intergenic 55.0%
GGAAGGTTTCACAGAGGCAG+AGG - chr7_1:22946646-22946665 Msa1014350:CDS 55.0%
CCCCCACAGAAAAACCGCTA+CGG + chr7_1:22947438-22947457 None:intergenic 55.0%
! CCGTAGCGGTTTTTCTGTGG+GGG - chr7_1:22947435-22947454 Msa1014350:CDS 55.0%
TCCAGCCGCAATCAAGACCG+TGG + chr7_1:22946387-22946406 None:intergenic 60.0%
GCCACGGTCTTGATTGCGGC+TGG - chr7_1:22946383-22946402 Msa1014350:exon 65.0%
! GGTGTTATCCCTCCGGCTCC+CGG - chr7_1:22947033-22947052 Msa1014350:intron 65.0%
! CCTTTTCTCCGGGAGCCGGA+GGG + chr7_1:22947044-22947063 None:intergenic 65.0%
CCTCCGGCTCCCGGAGAAAA+GGG - chr7_1:22947042-22947061 Msa1014350:intron 65.0%
! GAGCCCTTTTCTCCGGGAGC+CGG + chr7_1:22947048-22947067 None:intergenic 65.0%
CCCTCCGGCTCCCGGAGAAA+AGG - chr7_1:22947041-22947060 Msa1014350:intron 70.0%
! CCCTTTTCTCCGGGAGCCGG+AGG + chr7_1:22947045-22947064 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 22945160 22948040 22945160 ID=Msa1014350;Name=Msa1014350
chr7_1 mRNA 22945160 22948040 22945160 ID=Msa1014350-mRNA-1;Parent=Msa1014350;Name=Msa1014350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=191|1|1|1|0.5|0.33|3|889|270
chr7_1 exon 22945160 22945767 22945160 ID=Msa1014350-mRNA-1:exon:5350;Parent=Msa1014350-mRNA-1
chr7_1 exon 22946108 22946706 22946108 ID=Msa1014350-mRNA-1:exon:5349;Parent=Msa1014350-mRNA-1
chr7_1 exon 22947355 22948040 22947355 ID=Msa1014350-mRNA-1:exon:5348;Parent=Msa1014350-mRNA-1
chr7_1 five_prime_UTR 22947850 22948040 22947850 ID=Msa1014350-mRNA-1:five_prime_utr;Parent=Msa1014350-mRNA-1
chr7_1 CDS 22947355 22947849 22947355 ID=Msa1014350-mRNA-1:cds;Parent=Msa1014350-mRNA-1
chr7_1 CDS 22946389 22946706 22946389 ID=Msa1014350-mRNA-1:cds;Parent=Msa1014350-mRNA-1
chr7_1 three_prime_UTR 22946108 22946388 22946108 ID=Msa1014350-mRNA-1:three_prime_utr;Parent=Msa1014350-mRNA-1
chr7_1 three_prime_UTR 22945160 22945767 22945160 ID=Msa1014350-mRNA-1:three_prime_utr;Parent=Msa1014350-mRNA-1
Gene Sequence

>Msa1014350

ATGCAAGCCAATCTGCATGCCATGTACACACCTCACATCAAAACTCCAACCAAAATAGTTTGCACATTAAACGAAAACAGCCAAACCAATCAACAATCTTCAGTTGGCAAAATTAAACGTTTTGTTCTTACACAAGAAGGTAGAACCAAATTGAACCTTATCCAAGATAAAGAGTTTTATGCATATCCACGCCTTGTGACTCATGTTGATGATGGATTCATTTCAACACTAACAAATCTTTACAGAGAAAGGTTGAGACCTAACATGGAGATTCTTGATCTCATGAGTTCTTGGGTTAGTCATCTACCAAATGATGTAAAATACAAAAGAGTGGTAGGGCATGGGATGAATGGACAAGAACTTGCAAAGAATTCAAGGTTGGATTACTTTGTCATAAAGGATCTTAACAAAGATCAACAGTTTGAATTTGAGAGTTGCACTTTTGATGCAGTTTTGTGCACTGTTAGTGTGCAGTATCTCCAACAACCAGAGAAGGTATTTGCAGAGGTGTTTAGGTTGCTAAAACCAGGAGGGGTGTTCATAGTGAGTTTTAGCAACAGAATGTTTTATGAGAAAGCCATAAGTGCATGGAGAGAAGGGACTACTTATAGTAGGGTGCGACTTGTGGTTCAGTACTTCCAATCAGTGGAAGGTTTCACAGAGGCAGAGGTCGTTAGAAAACTTCCAACTACCATTGATGACAAGTCACCACTACTGAGCACGGTCATGAAGCTCTTTGGATTGTTTTCAGCGTCAGATCCCTTTTATGCAGTTATTGCTTATAGGAATTTTAAACCAATACATGATGATTAA

Protein sequence

>Msa1014350

MQANLHAMYTPHIKTPTKIVCTLNENSQTNQQSSVGKIKRFVLTQEGRTKLNLIQDKEFYAYPRLVTHVDDGFISTLTNLYRERLRPNMEILDLMSSWVSHLPNDVKYKRVVGHGMNGQELAKNSRLDYFVIKDLNKDQQFEFESCTFDAVLCTVSVQYLQQPEKVFAEVFRLLKPGGVFIVSFSNRMFYEKAISAWREGTTYSRVRLVVQYFQSVEGFTEAEVVRKLPTTIDDKSPLLSTVMKLFGLFSASDPFYAVIAYRNFKPIHDD*