AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1193400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193400 MtrunA17_Chr8g0348281 82.716 243 14 3 1 230 1 228 2.27e-145 404
Msa1193400 MtrunA17_Chr4g0019181 93.506 77 5 0 100 176 92 168 2.55e-49 159
Msa1193400 MtrunA17_Chr4g0019171 68.605 86 10 2 1 69 1 86 2.91e-31 110
Msa1193400 MtrunA17_Chr1g0190931 26.484 219 138 7 13 211 17 232 1.83e-19 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1193400 AT2G46100.1 61.502 213 54 4 28 216 27 235 7.92e-91 267
Msa1193400 AT2G46100.2 52.000 150 44 4 28 153 27 172 2.40e-40 138
Msa1193400 AT3G04890.1 34.965 143 87 3 82 220 76 216 2.16e-22 91.7
Msa1193400 AT3G04890.3 34.965 143 87 3 82 220 80 220 3.08e-22 91.3
Msa1193400 AT3G04890.2 32.283 127 74 2 82 196 76 202 2.33e-16 75.5
Msa1193400 AT3G04890.4 32.283 127 74 2 82 196 80 206 2.96e-16 75.1

Find 61 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGGAGGCCTATTCTTTC+TGG 0.046570 8_1:+39697165 Msa1193400:CDS
TGTTCTCTTGTTTAGTTTCA+TGG 0.194002 8_1:+39695318 Msa1193400:exon
GTTGTTGTGACTCTTGATTT+TGG 0.256583 8_1:-39695468 None:intergenic
CACTAACTTTGGATCACTTC+TGG 0.287804 8_1:+39696721 Msa1193400:CDS
AAAGCTTGCTTAATTATTGA+TGG 0.297894 8_1:+39697986 Msa1193400:three_prime_UTR
TTGTGGTGATGTTGTTGTTT+TGG 0.314085 8_1:-39695400 None:intergenic
AGGAATATCCTGTATATATA+TGG 0.323875 8_1:+39697848 Msa1193400:three_prime_UTR
TGCATTGAATTTGAAACCTA+TGG 0.325155 8_1:-39695435 None:intergenic
TATGGTTTACCAGATTAATT+AGG 0.325566 8_1:+39697866 Msa1193400:three_prime_UTR
ATGTTACTAGATTCAATGTT+TGG 0.338533 8_1:+39695089 None:intergenic
GCTGTATCTTGTCCTTTCCT+TGG 0.347381 8_1:+39697148 Msa1193400:CDS
CTGTGACAAAATAAGATCTT+TGG 0.367519 8_1:-39695618 None:intergenic
CTTTGTTCAAGCAAATTCTA+AGG 0.368956 8_1:+39697645 Msa1193400:CDS
AAAAGGAACTGCACTAACTT+TGG 0.371780 8_1:+39696710 Msa1193400:CDS
CACATGTAAGTCTGTGGTAT+TGG 0.388973 8_1:+39697780 Msa1193400:three_prime_UTR
CTGAAGTTGTCCAGGTGAAT+AGG 0.399442 8_1:+39697710 Msa1193400:exon
GTATCTTGTCCTTTCCTTGG+AGG 0.412030 8_1:+39697151 Msa1193400:CDS
CCATGACAGGATAAAGGAAT+TGG 0.428536 8_1:+39697111 Msa1193400:intron
TTTGCTCCATGACAGGATAA+AGG 0.440137 8_1:+39697105 Msa1193400:intron
GTTAGAATCTAAGAACAAAC+AGG 0.441894 8_1:-39695278 None:intergenic
ATTCACAGACCTAATTAATC+TGG 0.444076 8_1:-39697875 None:intergenic
CTGGTAAACCATATATATAC+AGG 0.446381 8_1:-39697856 None:intergenic
CTTTCAGGCATGTGGAGCAT+TGG 0.446746 8_1:+39697606 Msa1193400:intron
GTACTAATTATAGAAGTCTA+TGG 0.447623 8_1:+39697806 Msa1193400:three_prime_UTR
TGAGATTTACCAGAAAGAAT+AGG 0.456237 8_1:-39697174 None:intergenic
GTGGTGATGGTTGTGACTAA+TGG 0.469661 8_1:-39695359 None:intergenic
TGAAGAGGATTGTGAATTTG+CGG 0.489339 8_1:+39696652 Msa1193400:CDS
AAGGACTTCAGCGTTTCAAA+AGG 0.491123 8_1:+39696693 Msa1193400:CDS
TTTAAGCTAAATCCCTTGCT+AGG 0.497530 8_1:-39697668 None:intergenic
ATTAATTAGGTCTGTGAATG+TGG 0.499247 8_1:+39697879 Msa1193400:three_prime_UTR
AGGTTTCAAATTCAATGCAA+TGG 0.509267 8_1:+39695439 Msa1193400:CDS
AACTTAGATATTTAAATACA+AGG 0.509684 8_1:+39695246 Msa1193400:five_prime_UTR
CTAGGTTGCTGAAGTTGTCC+AGG 0.518768 8_1:+39697702 Msa1193400:CDS
TAGATATTTAAATACAAGGC+AGG 0.521780 8_1:+39695250 Msa1193400:five_prime_UTR
CACAACAGAAGCACGATCAA+TGG 0.522503 8_1:-39695575 None:intergenic
CACAATCAGGAAAAGTATGC+AGG 0.531502 8_1:+39697504 Msa1193400:CDS
CAACTATGAATCTTATGAAG+TGG 0.531678 8_1:+39696750 Msa1193400:CDS
CCTGAAAACTTTCAGGCATG+TGG 0.535655 8_1:+39697598 Msa1193400:intron
CATTGATCGTGCTTCTGTTG+TGG 0.537026 8_1:+39695576 Msa1193400:CDS
TGTGAATTTGCGGATCCAGC+GGG 0.538988 8_1:+39696662 Msa1193400:CDS
CACATTGAATGCATATGAAG+AGG 0.540073 8_1:+39696637 Msa1193400:CDS
AACTATGAATCTTATGAAGT+GGG 0.541276 8_1:+39696751 Msa1193400:CDS
CCAGAAAGAATAGGCCTCCA+AGG 0.545523 8_1:-39697165 None:intergenic
GTAGAAGCTTATGATGTACT+AGG 0.548207 8_1:+39697828 Msa1193400:three_prime_UTR
AGGATAAAGGAATTGGTCAC+TGG 0.548719 8_1:+39697118 Msa1193400:intron
GCAAATTCTAAGGCCTAGCA+AGG 0.551037 8_1:+39697655 Msa1193400:CDS
ATATAATTTACCTATTCACC+TGG 0.562345 8_1:-39697720 None:intergenic
TCACAACAACAGAACAATGT+AGG 0.569019 8_1:+39695481 Msa1193400:CDS
GAAGCTTCTTCGTCATCAGA+TGG 0.574237 8_1:-39695529 None:intergenic
GCTTAAAAGATTATGTGACT+AGG 0.578708 8_1:+39697684 Msa1193400:CDS
TTAAAATAACAGCTCTAGTG+TGG 0.582268 8_1:-39695193 None:intergenic
AAGAATAGGCCTCCAAGGAA+AGG 0.586585 8_1:-39697160 None:intergenic
AGAACAAAGAAGTGTGGTGA+TGG 0.594904 8_1:-39695372 None:intergenic
ATTATACACATGTAAGTCTG+TGG 0.609997 8_1:+39697774 Msa1193400:three_prime_UTR
AGTCCTTTAAAAGATCCCGC+TGG 0.610274 8_1:-39696677 None:intergenic
CTTCGTCATCAGATGGAGAA+CGG 0.611430 8_1:-39695522 None:intergenic
TTGTGAATTTGCGGATCCAG+CGG 0.612444 8_1:+39696661 Msa1193400:CDS
GTTTGAAGAAGTCTCTGAGG+AGG 0.641425 8_1:-39695553 None:intergenic
CAAATTCTAAGGCCTAGCAA+GGG 0.670959 8_1:+39697656 Msa1193400:CDS
ATGGTTTGAAGAAGTCTCTG+AGG 0.694702 8_1:-39695556 None:intergenic
GTGCAAAGAACAAAGAAGTG+TGG 0.724805 8_1:-39695378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTACTTCATTTTTTTTT+TGG + chr8_1:39695133-39695152 Msa1193400:five_prime_UTR 15.0%
!!! TATTTTAATCCATTTTTATG+TGG + chr8_1:39695208-39695227 Msa1193400:five_prime_UTR 15.0%
!! AACTTAGATATTTAAATACA+AGG + chr8_1:39695246-39695265 Msa1193400:five_prime_UTR 15.0%
!!! TAAAATTTGTTAGTTTAATC+AGG - chr8_1:39696071-39696090 None:intergenic 15.0%
!!! TACTACTCAATAATGTTTTA+GGG + chr8_1:39696405-39696424 Msa1193400:intron 20.0%
!!! TTTTGTATCAGTCATTATAT+AGG - chr8_1:39696522-39696541 None:intergenic 20.0%
!!! GTATTTTGATTATAATCAGA+TGG + chr8_1:39696573-39696592 Msa1193400:intron 20.0%
!! GATTAAACTCTATTAAGTTA+AGG - chr8_1:39696976-39696995 None:intergenic 20.0%
!! TATAAAAAACACAAGTTTCT+AGG - chr8_1:39697014-39697033 None:intergenic 20.0%
!! AATTTCATTATGTTCATCAA+TGG - chr8_1:39697230-39697249 None:intergenic 20.0%
!! ATGTTCAAATTAACATGAAT+CGG + chr8_1:39697342-39697361 Msa1193400:intron 20.0%
!!! TATTATTTTGATACACAATC+AGG + chr8_1:39697491-39697510 Msa1193400:CDS 20.0%
!!! CTTCATTTTTTTTTTGGACA+TGG + chr8_1:39695139-39695158 Msa1193400:five_prime_UTR 25.0%
!!! TTTTTTTTTGGACATGGATT+TGG + chr8_1:39695145-39695164 Msa1193400:five_prime_UTR 25.0%
! TAGATATTTAAATACAAGGC+AGG + chr8_1:39695250-39695269 Msa1193400:five_prime_UTR 25.0%
!!! TATGGATTTTTGTGTTATTG+TGG - chr8_1:39695420-39695439 None:intergenic 25.0%
! ACAATAACACAAAAATCCAT+AGG + chr8_1:39695419-39695438 Msa1193400:CDS 25.0%
!! TTTCATTTGATTTCTGTGTT+TGG + chr8_1:39695696-39695715 Msa1193400:intron 25.0%
!! TTCATTTGATTTCTGTGTTT+GGG + chr8_1:39695697-39695716 Msa1193400:intron 25.0%
! CATACTTAAAATTGAAGCTA+TGG - chr8_1:39695733-39695752 None:intergenic 25.0%
!!! CATAGCTTCAATTTTAAGTA+TGG + chr8_1:39695731-39695750 Msa1193400:intron 25.0%
!!! TGTCTTTTTTACACATCATT+TGG + chr8_1:39695767-39695786 Msa1193400:intron 25.0%
!! GAGAAAAAGTTGATTACAAT+CGG + chr8_1:39696022-39696041 Msa1193400:intron 25.0%
!!! ATTGCTATTTTAAGCACTTA+CGG - chr8_1:39696233-39696252 None:intergenic 25.0%
! TGCTTAAAATAGCAATACAA+AGG + chr8_1:39696237-39696256 Msa1193400:intron 25.0%
!! GTACTACTCAATAATGTTTT+AGG + chr8_1:39696404-39696423 Msa1193400:intron 25.0%
! CAAAATGAAGCTAATACAAT+TGG + chr8_1:39696537-39696556 Msa1193400:intron 25.0%
! AACTATGAATCTTATGAAGT+GGG + chr8_1:39696751-39696770 Msa1193400:CDS 25.0%
!! AATATAGAGTTTTGCAACTT+AGG + chr8_1:39696823-39696842 Msa1193400:intron 25.0%
! ATGTAATATCAAGAGTTACA+AGG - chr8_1:39696883-39696902 None:intergenic 25.0%
! CTCAATCTATTAGATATACA+TGG - chr8_1:39697207-39697226 None:intergenic 25.0%
! TGTTCAAATTAACATGAATC+GGG + chr8_1:39697343-39697362 Msa1193400:intron 25.0%
! ATATAATTTACCTATTCACC+TGG - chr8_1:39697723-39697742 None:intergenic 25.0%
! GTACTAATTATAGAAGTCTA+TGG + chr8_1:39697806-39697825 Msa1193400:three_prime_UTR 25.0%
! AGGAATATCCTGTATATATA+TGG + chr8_1:39697848-39697867 Msa1193400:three_prime_UTR 25.0%
! TATGGTTTACCAGATTAATT+AGG + chr8_1:39697866-39697885 Msa1193400:three_prime_UTR 25.0%
!!! CTTTTCTCTGTTATTTTTTC+TGG - chr8_1:39697913-39697932 None:intergenic 25.0%
! CAGAAAAAATAACAGAGAAA+AGG + chr8_1:39697911-39697930 Msa1193400:three_prime_UTR 25.0%
!! AAAGCTTGCTTAATTATTGA+TGG + chr8_1:39697986-39698005 Msa1193400:three_prime_UTR 25.0%
! TTAAAATAACAGCTCTAGTG+TGG - chr8_1:39695196-39695215 None:intergenic 30.0%
TAATGCTAGCCACATAAAAA+TGG - chr8_1:39695220-39695239 None:intergenic 30.0%
GTTAGAATCTAAGAACAAAC+AGG - chr8_1:39695281-39695300 None:intergenic 30.0%
! TGTTCTCTTGTTTAGTTTCA+TGG + chr8_1:39695318-39695337 Msa1193400:exon 30.0%
! TGCATTGAATTTGAAACCTA+TGG - chr8_1:39695438-39695457 None:intergenic 30.0%
AGGTTTCAAATTCAATGCAA+TGG + chr8_1:39695439-39695458 Msa1193400:CDS 30.0%
CTGTGACAAAATAAGATCTT+TGG - chr8_1:39695621-39695640 None:intergenic 30.0%
!!! CAAAGATCTTATTTTGTCAC+AGG + chr8_1:39695619-39695638 Msa1193400:CDS 30.0%
!!! ATGCTTTTTCTTATGAAACG+TGG + chr8_1:39695658-39695677 Msa1193400:intron 30.0%
!! TCATTTGGATGATTGATTTG+TGG + chr8_1:39695782-39695801 Msa1193400:intron 30.0%
ATTCCTAGTTACTGATAAGT+GGG + chr8_1:39695839-39695858 Msa1193400:intron 30.0%
AACGTTTATTGGGTTATGAT+TGG + chr8_1:39695879-39695898 Msa1193400:intron 30.0%
ACGTTTATTGGGTTATGATT+GGG + chr8_1:39695880-39695899 Msa1193400:intron 30.0%
!! GTATCTTTTACTTTTGAACC+AGG + chr8_1:39696349-39696368 Msa1193400:intron 30.0%
!!! CTCAATAATGTTTTAGGGAT+TGG + chr8_1:39696410-39696429 Msa1193400:intron 30.0%
TTATAATCAGATGGTTCACA+TGG + chr8_1:39696582-39696601 Msa1193400:intron 30.0%
CAACTATGAATCTTATGAAG+TGG + chr8_1:39696750-39696769 Msa1193400:CDS 30.0%
TTACATGCAACTGATGATAA+AGG + chr8_1:39696897-39696916 Msa1193400:intron 30.0%
! TCAATCTTTTTATCGAGTGT+TGG + chr8_1:39697045-39697064 Msa1193400:intron 30.0%
TGAGATTTACCAGAAAGAAT+AGG - chr8_1:39697177-39697196 None:intergenic 30.0%
TGTATTTATCTGCATTTGAC+TGG + chr8_1:39697276-39697295 Msa1193400:intron 30.0%
ACGAAAAATAAATCCAAGAG+AGG - chr8_1:39697304-39697323 None:intergenic 30.0%
! CGGGTTTTTAATAGAATATG+TGG + chr8_1:39697362-39697381 Msa1193400:intron 30.0%
TGCTGCAACATATATTAACA+TGG - chr8_1:39697456-39697475 None:intergenic 30.0%
TTAATATATGTTGCAGCAAC+TGG + chr8_1:39697458-39697477 Msa1193400:intron 30.0%
CTAAATTCCTGAAAACTTTC+AGG + chr8_1:39697591-39697610 Msa1193400:intron 30.0%
CTTTGTTCAAGCAAATTCTA+AGG + chr8_1:39697645-39697664 Msa1193400:CDS 30.0%
GCTTAAAAGATTATGTGACT+AGG + chr8_1:39697684-39697703 Msa1193400:CDS 30.0%
ATTATACACATGTAAGTCTG+TGG + chr8_1:39697774-39697793 Msa1193400:three_prime_UTR 30.0%
CTGGTAAACCATATATATAC+AGG - chr8_1:39697859-39697878 None:intergenic 30.0%
ATTCACAGACCTAATTAATC+TGG - chr8_1:39697878-39697897 None:intergenic 30.0%
ATTAATTAGGTCTGTGAATG+TGG + chr8_1:39697879-39697898 Msa1193400:three_prime_UTR 30.0%
!!! TTGTGGTGATGTTGTTGTTT+TGG - chr8_1:39695403-39695422 None:intergenic 35.0%
! GTTGTTGTGACTCTTGATTT+TGG - chr8_1:39695471-39695490 None:intergenic 35.0%
TCACAACAACAGAACAATGT+AGG + chr8_1:39695481-39695500 Msa1193400:CDS 35.0%
!! GATGATTGATTTGTGGAGAA+AGG + chr8_1:39695789-39695808 Msa1193400:intron 35.0%
CATGACTATTCAGAGTTGTT+AGG + chr8_1:39695812-39695831 Msa1193400:intron 35.0%
GATTCCTAGTTACTGATAAG+TGG + chr8_1:39695838-39695857 Msa1193400:intron 35.0%
CGTTTATTGGGTTATGATTG+GGG + chr8_1:39695881-39695900 Msa1193400:intron 35.0%
GTTTATTGGGTTATGATTGG+GGG + chr8_1:39695882-39695901 Msa1193400:intron 35.0%
TTTATTGGGTTATGATTGGG+GGG + chr8_1:39695883-39695902 Msa1193400:intron 35.0%
TCAGGAGCAATGTTGTAATA+TGG + chr8_1:39696168-39696187 Msa1193400:intron 35.0%
GTAATGCTGAGAACAAAAAG+AGG + chr8_1:39696432-39696451 Msa1193400:intron 35.0%
CACATTGAATGCATATGAAG+AGG + chr8_1:39696637-39696656 Msa1193400:CDS 35.0%
TGAAGAGGATTGTGAATTTG+CGG + chr8_1:39696652-39696671 Msa1193400:CDS 35.0%
AAAAGGAACTGCACTAACTT+TGG + chr8_1:39696710-39696729 Msa1193400:CDS 35.0%
! TATGAAGTGGGAAGATTTTG+AGG + chr8_1:39696763-39696782 Msa1193400:CDS 35.0%
!! AAGCAGTAGAAAAGTGTTCA+AGG - chr8_1:39696798-39696817 None:intergenic 35.0%
GATGATAAAGGTTTCTGATG+CGG + chr8_1:39696909-39696928 Msa1193400:intron 35.0%
CTATTAAGTTAAGGCTGCTT+AGG - chr8_1:39696967-39696986 None:intergenic 35.0%
!! GTTTCTAGGATATGTTTAGC+AGG - chr8_1:39697000-39697019 None:intergenic 35.0%
!! TGCTTGAACAAAGCCATTTT+TGG - chr8_1:39697638-39697657 None:intergenic 35.0%
TTTAAGCTAAATCCCTTGCT+AGG - chr8_1:39697671-39697690 None:intergenic 35.0%
GTAGAAGCTTATGATGTACT+AGG + chr8_1:39697828-39697847 Msa1193400:three_prime_UTR 35.0%
! AGAACAAAGAAGTGTGGTGA+TGG - chr8_1:39695375-39695394 None:intergenic 40.0%
GTGCAAAGAACAAAGAAGTG+TGG - chr8_1:39695381-39695400 None:intergenic 40.0%
ATGGTTTGAAGAAGTCTCTG+AGG - chr8_1:39695559-39695578 None:intergenic 40.0%
CTACCCACTTATCAGTAACT+AGG - chr8_1:39695845-39695864 None:intergenic 40.0%
CTAGTTACTGATAAGTGGGT+AGG + chr8_1:39695843-39695862 Msa1193400:intron 40.0%
TTACTGATAAGTGGGTAGGT+CGG + chr8_1:39695847-39695866 Msa1193400:intron 40.0%
GTTAGAATAGAACAGCAACC+TGG - chr8_1:39696370-39696389 None:intergenic 40.0%
! ATCTATTTCTCCCAACTCTC+AGG + chr8_1:39696608-39696627 Msa1193400:intron 40.0%
AAGGACTTCAGCGTTTCAAA+AGG + chr8_1:39696693-39696712 Msa1193400:CDS 40.0%
CACTAACTTTGGATCACTTC+TGG + chr8_1:39696721-39696740 Msa1193400:CDS 40.0%
TCATACATTTGCTCCATGAC+AGG + chr8_1:39697098-39697117 Msa1193400:intron 40.0%
TTTGCTCCATGACAGGATAA+AGG + chr8_1:39697105-39697124 Msa1193400:intron 40.0%
CCAATTCCTTTATCCTGTCA+TGG - chr8_1:39697114-39697133 None:intergenic 40.0%
CCATGACAGGATAAAGGAAT+TGG + chr8_1:39697111-39697130 Msa1193400:intron 40.0%
AGGATAAAGGAATTGGTCAC+TGG + chr8_1:39697118-39697137 Msa1193400:intron 40.0%
! CACAATCAGGAAAAGTATGC+AGG + chr8_1:39697504-39697523 Msa1193400:CDS 40.0%
GCATTGGAATGTGCCAAAAA+TGG + chr8_1:39697622-39697641 Msa1193400:CDS 40.0%
!! CAAATTCTAAGGCCTAGCAA+GGG + chr8_1:39697656-39697675 Msa1193400:CDS 40.0%
CACATGTAAGTCTGTGGTAT+TGG + chr8_1:39697780-39697799 Msa1193400:three_prime_UTR 40.0%
!! GTGGTGATGGTTGTGACTAA+TGG - chr8_1:39695362-39695381 None:intergenic 45.0%
CTTCGTCATCAGATGGAGAA+CGG - chr8_1:39695525-39695544 None:intergenic 45.0%
GAAGCTTCTTCGTCATCAGA+TGG - chr8_1:39695532-39695551 None:intergenic 45.0%
! GTTTGAAGAAGTCTCTGAGG+AGG - chr8_1:39695556-39695575 None:intergenic 45.0%
! CACAACAGAAGCACGATCAA+TGG - chr8_1:39695578-39695597 None:intergenic 45.0%
CATTGATCGTGCTTCTGTTG+TGG + chr8_1:39695576-39695595 Msa1193400:CDS 45.0%
GCCAGGCTCAAACGTTTATT+GGG + chr8_1:39695869-39695888 Msa1193400:intron 45.0%
ACCCAATAAACGTTTGAGCC+TGG - chr8_1:39695873-39695892 None:intergenic 45.0%
AACACTTTGCTCCAACAGTG+TGG + chr8_1:39696144-39696163 Msa1193400:intron 45.0%
TGTGAGATCTCCTGAGAGTT+GGG - chr8_1:39696621-39696640 None:intergenic 45.0%
ATGTGAGATCTCCTGAGAGT+TGG - chr8_1:39696622-39696641 None:intergenic 45.0%
TTGTGAATTTGCGGATCCAG+CGG + chr8_1:39696661-39696680 Msa1193400:CDS 45.0%
! GATCCAGCGGGATCTTTTAA+AGG + chr8_1:39696674-39696693 Msa1193400:CDS 45.0%
! AGTCCTTTAAAAGATCCCGC+TGG - chr8_1:39696680-39696699 None:intergenic 45.0%
GCTGTATCTTGTCCTTTCCT+TGG + chr8_1:39697148-39697167 Msa1193400:CDS 45.0%
GTATCTTGTCCTTTCCTTGG+AGG + chr8_1:39697151-39697170 Msa1193400:CDS 45.0%
AAGAATAGGCCTCCAAGGAA+AGG - chr8_1:39697163-39697182 None:intergenic 45.0%
CATTTGACTGGAACCTCTCT+TGG + chr8_1:39697288-39697307 Msa1193400:intron 45.0%
! CCACATGCCTGAAAGTTTTC+AGG - chr8_1:39697601-39697620 None:intergenic 45.0%
CCTGAAAACTTTCAGGCATG+TGG + chr8_1:39697598-39697617 Msa1193400:intron 45.0%
!! GCAAATTCTAAGGCCTAGCA+AGG + chr8_1:39697655-39697674 Msa1193400:CDS 45.0%
CTGAAGTTGTCCAGGTGAAT+AGG + chr8_1:39697710-39697729 Msa1193400:exon 45.0%
GGCCAGGCTCAAACGTTTAT+TGG + chr8_1:39695868-39695887 Msa1193400:intron 50.0%
TTGCTCCAACAGTGTGGTTC+AGG + chr8_1:39696150-39696169 Msa1193400:intron 50.0%
TTGCTCCTGAACCACACTGT+TGG - chr8_1:39696158-39696177 None:intergenic 50.0%
TGTGAATTTGCGGATCCAGC+GGG + chr8_1:39696662-39696681 Msa1193400:CDS 50.0%
CCAGAAAGAATAGGCCTCCA+AGG - chr8_1:39697168-39697187 None:intergenic 50.0%
CCTTGGAGGCCTATTCTTTC+TGG + chr8_1:39697165-39697184 Msa1193400:CDS 50.0%
CTTTCAGGCATGTGGAGCAT+TGG + chr8_1:39697606-39697625 Msa1193400:intron 50.0%
CTAGGTTGCTGAAGTTGTCC+AGG + chr8_1:39697702-39697721 Msa1193400:CDS 50.0%
GGTTATGATTGGGGGGCTGA+TGG + chr8_1:39695890-39695909 Msa1193400:intron 55.0%
TATGATTGGGGGGCTGATGG+AGG + chr8_1:39695893-39695912 Msa1193400:intron 55.0%
ACTGCATCCCGCTTTGCAGT+CGG + chr8_1:39696261-39696280 Msa1193400:intron 55.0%
TACGTCTCCGACTGCAAAGC+GGG - chr8_1:39696271-39696290 None:intergenic 55.0%
CTACGTCTCCGACTGCAAAG+CGG - chr8_1:39696272-39696291 None:intergenic 55.0%
GATAAGTGGGTAGGTCGGCC+AGG + chr8_1:39695852-39695871 Msa1193400:intron 60.0%
CGCTTTGCAGTCGGAGACGT+AGG + chr8_1:39696270-39696289 Msa1193400:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 39695104 39698028 39695104 ID=Msa1193400;Name=Msa1193400
chr8_1 mRNA 39695104 39698028 39695104 ID=Msa1193400-mRNA-1;Parent=Msa1193400;Name=Msa1193400-mRNA-1;_AED=0.16;_eAED=0.16;_QI=233|1|1|1|1|1|5|301|230
chr8_1 exon 39695104 39695640 39695104 ID=Msa1193400-mRNA-1:exon:12977;Parent=Msa1193400-mRNA-1
chr8_1 exon 39696630 39696784 39696630 ID=Msa1193400-mRNA-1:exon:12978;Parent=Msa1193400-mRNA-1
chr8_1 exon 39697120 39697186 39697120 ID=Msa1193400-mRNA-1:exon:12979;Parent=Msa1193400-mRNA-1
chr8_1 exon 39697474 39697525 39697474 ID=Msa1193400-mRNA-1:exon:12980;Parent=Msa1193400-mRNA-1
chr8_1 exon 39697613 39698028 39697613 ID=Msa1193400-mRNA-1:exon:12981;Parent=Msa1193400-mRNA-1
chr8_1 five_prime_UTR 39695104 39695336 39695104 ID=Msa1193400-mRNA-1:five_prime_utr;Parent=Msa1193400-mRNA-1
chr8_1 CDS 39695337 39695640 39695337 ID=Msa1193400-mRNA-1:cds;Parent=Msa1193400-mRNA-1
chr8_1 CDS 39696630 39696784 39696630 ID=Msa1193400-mRNA-1:cds;Parent=Msa1193400-mRNA-1
chr8_1 CDS 39697120 39697186 39697120 ID=Msa1193400-mRNA-1:cds;Parent=Msa1193400-mRNA-1
chr8_1 CDS 39697474 39697525 39697474 ID=Msa1193400-mRNA-1:cds;Parent=Msa1193400-mRNA-1
chr8_1 CDS 39697613 39697727 39697613 ID=Msa1193400-mRNA-1:cds;Parent=Msa1193400-mRNA-1
chr8_1 three_prime_UTR 39697728 39698028 39697728 ID=Msa1193400-mRNA-1:three_prime_utr;Parent=Msa1193400-mRNA-1
Gene Sequence

>Msa1193400

ATGGCATTGTCTGCTATATCTTCCATTAGTCACAACCATCACCACACTTCTTTGTTCTTTGCACCAAAACAACAACATCACCACAATAACACAAAAATCCATAGGTTTCAAATTCAATGCAATGGAACAAACCAAAATCAAGAGTCACAACAACAGAACAATGTAGGCATTGCTGCTTCTACTTTCCGTTCTCCATCTGATGACGAAGAAGCTTCTCCTCCTCAGAGACTTCTTCAAACCATTGATCGTGCTTCTGTTGTGGACACAATCAAACAAGATTTCCAAAGATCTTATTTTGTCACAGGAGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCAGCGGGATCTTTTAAAGGACTTCAGCGTTTCAAAAGGAACTGCACTAACTTTGGATCACTTCTGGAGAAGTCAACTATGAATCTTATGAAGTGGGAAGATTTTGAGGATAAAGGAATTGGTCACTGGCGATTCAGCTGTATCTTGTCCTTTCCTTGGAGGCCTATTCTTTCTGCAACTGGATACACAGAATATTATTTTGATACACAATCAGGAAAAGTATGCAGGCATGTGGAGCATTGGAATGTGCCAAAAATGGCTTTGTTCAAGCAAATTCTAAGGCCTAGCAAGGGATTTAGCTTAAAAGATTATGTGACTAGGTTGCTGAAGTTGTCCAGGTGA

Protein sequence

>Msa1193400

MALSAISSISHNHHHTSLFFAPKQQHHHNNTKIHRFQIQCNGTNQNQESQQQNNVGIAASTFRSPSDDEEASPPQRLLQTIDRASVVDTIKQDFQRSYFVTGDLTLNAYEEDCEFADPAGSFKGLQRFKRNCTNFGSLLEKSTMNLMKWEDFEDKGIGHWRFSCILSFPWRPILSATGYTEYYFDTQSGKVCRHVEHWNVPKMALFKQILRPSKGFSLKDYVTRLLKLSR*