AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0144010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144010 MtrunA17_Chr1g0160011 88.172 372 23 2 215 565 11 382 0.0 657
Msa0144010 MtrunA17_Chr1g0160011 73.413 252 27 2 1 212 131 382 6.16e-120 359
Msa0144010 MtrunA17_Chr1g0160031 81.283 374 50 1 215 568 11 384 0.0 622
Msa0144010 MtrunA17_Chr1g0160031 70.079 254 36 2 2 215 131 384 2.13e-114 345
Msa0144010 MtrunA17_Chr1g0159991 78.836 378 58 2 213 568 6 383 0.0 597
Msa0144010 MtrunA17_Chr1g0159991 78.599 257 13 2 1 215 127 383 5.48e-132 390
Msa0144010 MtrunA17_Chr1g0159981 73.657 391 75 3 206 568 3 393 0.0 567
Msa0144010 MtrunA17_Chr1g0159981 75.486 257 21 2 1 215 137 393 1.24e-129 384
Msa0144010 MtrunA17_Chr1g0159971 63.243 370 112 3 222 567 24 393 1.08e-167 481
Msa0144010 MtrunA17_Chr1g0159971 60.784 255 58 2 2 214 139 393 1.01e-102 315
Msa0144010 MtrunA17_Chr1g0160101 56.878 378 138 4 214 567 13 389 7.60e-146 426
Msa0144010 MtrunA17_Chr1g0160101 55.118 254 72 2 3 214 136 389 1.38e-86 273
Msa0144010 MtrunA17_Chr7g0254461 52.800 375 151 5 219 567 19 393 5.50e-135 398
Msa0144010 MtrunA17_Chr7g0254461 48.450 258 88 4 2 214 136 393 9.79e-75 243
Msa0144010 MtrunA17_Chr8g0381581 51.902 368 152 5 219 561 16 383 2.25e-129 384
Msa0144010 MtrunA17_Chr8g0381581 46.032 252 91 4 2 208 132 383 3.16e-69 228
Msa0144010 MtrunA17_Chr7g0226941 46.089 358 166 5 235 567 25 380 6.05e-102 313
Msa0144010 MtrunA17_Chr7g0226941 40.625 256 107 5 3 214 126 380 1.78e-53 186
Msa0144010 MtrunA17_Chr6g0450701 42.659 361 168 8 233 565 29 378 7.71e-87 274
Msa0144010 MtrunA17_Chr6g0450701 36.965 257 114 6 2 212 124 378 2.44e-41 153
Msa0144010 MtrunA17_Chr7g0273101 43.767 361 168 10 232 563 18 372 1.24e-84 268
Msa0144010 MtrunA17_Chr7g0273101 36.800 250 109 6 4 206 121 368 1.92e-39 148
Msa0144010 MtrunA17_Chr7g0226931 39.075 389 188 8 223 565 13 398 3.72e-81 259
Msa0144010 MtrunA17_Chr7g0226931 31.868 273 127 6 3 216 130 402 3.70e-37 142
Msa0144010 MtrunA17_Chr7g0275291 39.211 380 195 8 214 565 4 375 6.28e-81 258
Msa0144010 MtrunA17_Chr7g0275291 32.812 256 120 6 3 212 126 375 1.45e-32 129
Msa0144010 MtrunA17_Chr7g0226911 37.008 381 203 8 219 565 7 384 2.89e-80 257
Msa0144010 MtrunA17_Chr7g0226911 32.319 263 128 6 3 216 127 388 1.93e-37 142
Msa0144010 MtrunA17_Chr6g0450711 40.669 359 174 8 236 566 115 462 6.12e-76 248
Msa0144010 MtrunA17_Chr6g0450711 36.434 258 116 6 2 213 207 462 2.65e-40 152
Msa0144010 MtrunA17_Chr1g0191461 39.084 371 190 10 219 560 7 370 2.00e-74 241
Msa0144010 MtrunA17_Chr1g0191461 34.000 250 117 5 3 206 122 369 2.63e-34 133
Msa0144010 MtrunA17_Chr8g0352901 39.005 382 187 10 217 565 4 372 5.74e-74 240
Msa0144010 MtrunA17_Chr8g0352901 36.328 256 114 6 6 212 117 372 9.66e-40 149
Msa0144010 MtrunA17_Chr6g0450731 39.216 357 173 9 235 566 25 362 6.28e-74 239
Msa0144010 MtrunA17_Chr6g0450731 34.959 246 125 6 2 213 118 362 9.91e-42 154
Msa0144010 MtrunA17_Chr8g0347751 38.997 359 179 7 239 565 32 382 7.51e-74 240
Msa0144010 MtrunA17_Chr8g0347751 29.924 264 123 7 2 212 128 382 2.01e-26 111
Msa0144010 MtrunA17_Chr6g0450721 37.097 372 200 8 217 566 1 360 5.25e-72 234
Msa0144010 MtrunA17_Chr6g0450721 35.950 242 120 5 5 213 121 360 1.25e-40 150
Msa0144010 MtrunA17_Chr7g0271551 36.676 349 177 9 243 566 36 365 8.75e-66 218
Msa0144010 MtrunA17_Chr7g0271551 32.653 245 127 4 4 213 124 365 8.17e-33 129
Msa0144010 MtrunA17_Chr8g0339251 37.059 340 168 10 217 530 4 323 1.14e-54 188
Msa0144010 MtrunA17_Chr8g0339251 37.931 174 86 4 7 166 118 283 1.38e-24 105
Msa0144010 MtrunA17_Chr2g0283481 34.574 376 189 14 223 560 27 383 6.83e-45 163
Msa0144010 MtrunA17_Chr2g0283481 28.947 228 117 8 5 196 154 372 6.55e-15 77.0
Msa0144010 MtrunA17_Chr2g0283531 33.708 356 181 12 241 559 29 366 3.86e-41 152
Msa0144010 MtrunA17_Chr2g0283501 31.892 370 195 13 231 561 18 369 1.02e-39 149
Msa0144010 MtrunA17_Chr3g0104821 32.123 358 185 13 241 559 42 380 1.15e-39 149
Msa0144010 MtrunA17_Chr2g0317261 31.921 354 176 12 241 559 28 351 1.82e-39 147
Msa0144010 MtrunA17_Chr2g0317261 28.889 225 106 9 27 206 136 351 8.48e-14 73.2
Msa0144010 MtrunA17_Chr2g0317271 31.921 354 176 12 241 559 28 351 1.98e-39 147
Msa0144010 MtrunA17_Chr2g0317271 29.279 222 109 9 27 206 136 351 1.46e-13 72.4
Msa0144010 MtrunA17_Chr0c01g0489571 31.356 354 178 12 241 559 28 351 1.46e-38 145
Msa0144010 MtrunA17_Chr0c01g0489571 27.928 222 112 9 27 206 136 351 3.34e-12 68.2
Msa0144010 MtrunA17_Chr0c01g0489581 31.356 354 178 12 241 559 28 351 1.58e-38 145
Msa0144010 MtrunA17_Chr0c01g0489581 27.928 222 112 9 27 206 136 351 3.40e-12 68.2
Msa0144010 MtrunA17_Chr2g0283511 30.460 348 193 10 248 560 36 369 3.40e-36 139
Msa0144010 MtrunA17_Chr2g0283511 28.866 194 102 5 49 206 175 368 3.71e-16 80.5
Msa0144010 MtrunA17_Chr3g0112821 32.958 355 178 14 241 559 28 358 9.90e-36 137
Msa0144010 MtrunA17_Chr4g0057991 29.443 377 208 11 221 561 17 371 1.80e-35 137
Msa0144010 MtrunA17_Chr4g0057991 25.600 250 139 9 3 216 141 379 2.12e-11 65.9
Msa0144010 MtrunA17_Chr2g0301581 31.129 363 206 13 222 559 10 353 7.06e-35 135
Msa0144010 MtrunA17_Chr2g0301581 29.461 241 113 10 3 206 133 353 2.62e-11 65.5
Msa0144010 MtrunA17_Chr3g0093031 32.222 360 179 14 241 559 28 363 7.60e-34 132
Msa0144010 MtrunA17_Chr2g0301541 30.854 363 207 13 222 559 10 353 1.21e-33 131
Msa0144010 MtrunA17_Chr3g0096551 31.707 369 181 14 241 559 27 374 1.42e-33 132
Msa0144010 MtrunA17_Chr3g0112691 30.682 352 193 10 241 559 28 361 8.97e-33 129
Msa0144010 MtrunA17_Chr8g0344941 30.245 367 190 14 220 549 18 355 6.22e-30 121
Msa0144010 MtrunA17_Chr2g0330781 31.138 334 186 14 242 549 30 345 1.47e-29 119
Msa0144010 MtrunA17_Chr2g0330781 25.424 236 125 8 4 202 130 351 6.65e-12 67.4
Msa0144010 MtrunA17_Chr8g0349321 30.060 336 186 10 243 552 37 349 2.75e-29 119
Msa0144010 MtrunA17_Chr4g0027521 31.065 338 193 14 242 554 26 348 2.46e-27 113
Msa0144010 MtrunA17_Chr4g0027521 26.695 236 128 8 2 201 122 348 2.71e-12 68.6
Msa0144010 MtrunA17_Chr8g0341001 30.120 332 192 13 242 549 31 346 2.93e-27 113
Msa0144010 MtrunA17_Chr8g0341001 25.877 228 122 8 4 196 131 346 4.84e-12 67.8
Msa0144010 MtrunA17_Chr8g0349341 28.358 335 193 10 243 552 37 349 3.34e-27 113
Msa0144010 MtrunA17_Chr5g0438631 29.429 350 203 15 223 545 6 338 1.29e-26 111
Msa0144010 MtrunA17_Chr5g0396511 31.287 342 174 15 245 552 48 362 4.75e-26 110
Msa0144010 MtrunA17_Chr2g0301591 31.338 284 157 8 222 491 10 269 4.83e-26 108
Msa0144010 MtrunA17_Chr7g0274991 31.232 349 171 16 243 553 33 350 1.24e-25 108
Msa0144010 MtrunA17_Chr5g0432101 27.401 354 210 15 222 545 8 344 6.13e-25 106
Msa0144010 MtrunA17_Chr5g0432101 26.230 244 130 8 5 212 133 362 2.57e-12 68.6
Msa0144010 MtrunA17_Chr5g0438621 27.841 352 202 15 219 544 13 338 8.48e-25 105
Msa0144010 MtrunA17_Chr7g0275011 30.460 348 173 14 243 552 34 350 8.65e-25 106
Msa0144010 MtrunA17_Chr2g0294311 28.173 394 205 17 206 556 3 361 9.07e-25 106
Msa0144010 MtrunA17_Chr4g0068441 28.448 348 195 12 240 556 32 356 1.22e-24 105
Msa0144010 MtrunA17_Chr8g0374101 28.134 359 193 15 233 552 28 360 3.11e-24 104
Msa0144010 MtrunA17_Chr2g0294301 28.324 346 192 13 243 556 35 356 3.81e-24 104
Msa0144010 MtrunA17_Chr1g0156911 28.691 359 208 14 218 545 4 345 4.65e-24 103
Msa0144010 MtrunA17_Chr1g0182811 30.458 371 193 16 217 552 11 351 7.30e-24 103
Msa0144010 MtrunA17_Chr6g0457921 29.459 370 210 18 219 557 4 353 9.48e-24 103
Msa0144010 MtrunA17_Chr2g0301641 29.179 329 178 11 243 539 43 348 1.21e-23 103
Msa0144010 MtrunA17_Chr7g0275001 29.971 347 179 14 243 553 25 343 1.28e-23 102
Msa0144010 MtrunA17_Chr8g0371481 26.781 351 189 16 237 549 35 355 8.82e-23 100
Msa0144010 MtrunA17_Chr3g0120861 28.070 342 205 16 237 554 32 356 1.46e-22 99.8
Msa0144010 MtrunA17_Chr1g0156891 28.889 360 214 14 222 556 21 363 1.54e-22 99.8
Msa0144010 MtrunA17_Chr1g0156891 26.126 222 119 6 3 190 140 350 1.15e-11 66.6
Msa0144010 MtrunA17_Chr5g0438641 28.650 363 195 17 219 545 7 341 1.94e-22 99.0
Msa0144010 MtrunA17_Chr2g0320671 27.811 338 191 12 242 549 29 343 2.35e-22 99.0
Msa0144010 MtrunA17_Chr1g0189891 28.863 343 182 15 243 553 29 341 2.79e-22 98.6
Msa0144010 MtrunA17_Chr8g0380041 24.409 381 234 11 213 564 3 358 4.55e-22 98.2
Msa0144010 MtrunA17_Chr4g0008851 27.249 378 205 16 214 552 4 350 8.75e-22 97.4
Msa0144010 MtrunA17_Chr8g0349301 30.034 293 159 11 243 509 37 309 1.04e-21 96.3
Msa0144010 MtrunA17_Chr3g0086641 27.049 366 204 14 214 545 10 346 1.10e-21 97.1
Msa0144010 MtrunA17_Chr3g0099151 28.940 349 182 13 242 552 86 406 1.13e-21 97.8
Msa0144010 MtrunA17_Chr3g0131321 25.269 372 218 11 220 558 11 355 1.63e-21 96.7
Msa0144010 MtrunA17_Chr8g0344931 29.586 338 181 9 243 552 37 345 1.70e-21 96.3
Msa0144010 MtrunA17_Chr1g0156921 27.298 359 212 14 213 543 12 349 1.93e-21 96.3
Msa0144010 MtrunA17_Chr8g0349331 27.195 353 176 11 222 545 10 310 2.33e-21 95.5
Msa0144010 MtrunA17_Chr1g0156901 27.190 331 197 14 238 543 45 356 5.26e-21 95.1
Msa0144010 MtrunA17_Chr7g0275021 26.513 347 190 13 243 553 34 351 5.87e-21 95.1
Msa0144010 MtrunA17_Chr2g0285061 24.931 361 212 12 217 545 8 341 1.16e-20 94.0
Msa0144010 MtrunA17_Chr1g0156931 26.822 343 194 13 238 549 36 352 1.52e-20 93.6
Msa0144010 MtrunA17_Chr1g0156931 30.282 142 75 3 76 196 214 352 8.17e-12 67.0
Msa0144010 MtrunA17_Chr3g0105401 28.875 329 192 14 242 545 27 338 3.46e-20 92.4
Msa0144010 MtrunA17_Chr4g0046151 28.763 372 203 20 222 552 16 366 3.60e-20 92.4
Msa0144010 MtrunA17_Chr3g0142921 26.844 339 185 13 238 541 31 341 3.67e-20 92.4
Msa0144010 MtrunA17_Chr3g0077571 26.453 344 189 12 235 545 22 334 4.92e-20 92.0
Msa0144010 MtrunA17_Chr5g0420811 28.614 339 206 12 222 544 12 330 8.74e-20 91.3
Msa0144010 MtrunA17_Chr2g0301551 28.082 292 170 11 289 559 37 309 2.34e-19 89.4
Msa0144010 MtrunA17_Chr2g0301551 29.461 241 113 10 3 206 89 309 2.65e-11 65.1
Msa0144010 MtrunA17_Chr3g0104831 26.644 289 161 10 304 559 29 299 2.40e-19 89.0
Msa0144010 MtrunA17_Chr3g0099231 26.590 346 192 12 242 552 27 345 4.47e-19 89.4
Msa0144010 MtrunA17_Chr3g0085881 27.389 314 200 10 242 544 32 328 5.01e-19 89.0
Msa0144010 MtrunA17_Chr5g0444401 27.350 351 186 17 242 553 27 347 9.03e-19 88.2
Msa0144010 MtrunA17_Chr2g0284991 25.294 340 228 8 219 545 9 335 9.27e-19 88.6
Msa0144010 MtrunA17_Chr1g0189901 27.874 348 184 16 243 553 31 348 1.09e-18 88.2
Msa0144010 MtrunA17_Chr8g0371471 26.000 350 192 16 237 549 35 354 1.98e-18 87.4
Msa0144010 MtrunA17_Chr4g0017431 25.000 380 213 13 222 561 10 357 2.56e-18 87.0
Msa0144010 MtrunA17_Chr2g0284951 25.284 352 207 10 219 544 9 330 6.68e-18 85.9
Msa0144010 MtrunA17_Chr3g0077581 25.538 325 210 11 242 545 35 348 8.87e-18 85.5
Msa0144010 MtrunA17_Chr2g0301571 27.740 292 171 11 289 559 37 309 1.24e-17 84.3
Msa0144010 MtrunA17_Chr8g0380031 27.044 318 198 11 242 544 83 381 1.31e-17 85.1
Msa0144010 MtrunA17_Chr3g0142941 27.168 346 191 15 227 541 36 351 1.68e-17 84.3
Msa0144010 MtrunA17_Chr5g0434621 26.910 301 178 13 275 554 62 341 2.05e-17 84.0
Msa0144010 MtrunA17_Chr3g0085231 25.982 331 200 9 242 552 30 335 2.51e-17 83.6
Msa0144010 MtrunA17_Chr2g0284921 29.245 212 132 6 242 443 33 236 4.07e-17 83.2
Msa0144010 MtrunA17_Chr2g0285001 26.480 321 203 14 242 545 32 336 5.36e-17 83.2
Msa0144010 MtrunA17_Chr5g0405821 27.901 362 215 17 218 547 13 360 1.49e-16 81.6
Msa0144010 MtrunA17_Chr2g0283541 29.464 224 126 7 361 559 76 292 2.73e-16 79.7
Msa0144010 MtrunA17_Chr3g0092131 25.914 301 167 11 278 549 63 336 3.59e-16 80.5
Msa0144010 MtrunA17_Chr3g0104801 40.299 134 70 5 241 366 42 173 5.52e-16 76.3
Msa0144010 MtrunA17_Chr1g0157001 27.303 304 181 13 267 549 63 347 6.48e-16 79.7
Msa0144010 MtrunA17_Chr7g0266061 24.412 340 185 12 244 549 43 344 5.34e-15 76.6
Msa0144010 MtrunA17_Chr8g0370951 25.066 379 215 15 214 552 3 352 2.57e-14 74.7
Msa0144010 MtrunA17_Chr4g0027571 28.037 214 114 5 20 196 3 213 2.79e-14 72.4
Msa0144010 MtrunA17_Chr4g0027571 26.667 225 127 8 351 549 1 213 1.96e-12 67.0
Msa0144010 MtrunA17_Chr5g0437421 24.776 335 219 13 242 555 31 353 2.05e-13 72.0
Msa0144010 MtrunA17_Chr6g0459921 24.060 266 151 8 333 562 106 356 7.94e-13 70.1
Msa0144010 MtrunA17_Chr8g0370981 25.000 420 206 16 214 553 14 404 1.13e-12 70.1
Msa0144010 MtrunA17_Chr2g0301561 28.899 218 127 8 288 491 36 239 1.40e-12 68.2
Msa0144010 MtrunA17_Chr1g0178931 22.881 354 206 14 235 556 27 345 2.16e-12 68.6
Msa0144010 MtrunA17_Chr7g0229581 31.469 143 73 3 76 196 7 146 3.82e-12 64.7
Msa0144010 MtrunA17_Chr3g0106911 34.395 157 81 7 268 421 7 144 5.51e-12 65.9
Msa0144010 MtrunA17_Chr2g0284941 26.180 233 154 7 219 442 9 232 6.70e-12 67.4
Msa0144010 MtrunA17_Chr1g0198351 24.551 334 182 12 235 536 35 330 1.37e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144010 AT3G26430.1 48.285 379 171 4 214 567 2 380 5.53e-125 372
Msa0144010 AT3G26430.1 42.023 257 104 4 3 214 124 380 1.83e-62 210
Msa0144010 AT1G67830.1 48.315 356 151 6 238 568 25 372 1.57e-113 343
Msa0144010 AT1G67830.1 40.927 259 100 5 2 215 122 372 1.30e-60 205
Msa0144010 AT5G14450.1 45.968 372 174 5 222 568 20 389 7.08e-108 329
Msa0144010 AT5G14450.1 39.300 257 111 5 3 215 134 389 2.17e-52 184
Msa0144010 AT3G27950.1 43.548 372 175 7 220 565 8 370 9.46e-90 281
Msa0144010 AT3G27950.1 39.689 257 104 6 2 212 119 370 1.53e-44 162
Msa0144010 AT1G54790.3 39.247 372 192 10 220 563 10 375 1.66e-77 250
Msa0144010 AT1G54790.3 34.940 249 115 5 3 205 123 370 1.10e-37 144
Msa0144010 AT4G01130.1 40.267 375 188 9 221 565 12 380 3.74e-76 246
Msa0144010 AT4G01130.1 28.627 255 136 5 3 212 127 380 2.91e-23 102
Msa0144010 AT1G54790.1 37.669 369 197 9 223 563 11 374 7.14e-74 240
Msa0144010 AT1G54790.1 34.940 249 115 5 3 205 122 369 5.95e-38 144
Msa0144010 AT3G05180.1 38.352 352 184 8 240 563 33 379 1.21e-70 232
Msa0144010 AT3G05180.1 33.992 253 121 4 2 209 127 378 6.24e-34 133
Msa0144010 AT1G56670.1 38.032 376 190 9 217 567 16 373 7.32e-70 229
Msa0144010 AT1G56670.1 32.927 246 130 4 4 214 128 373 2.96e-33 131
Msa0144010 AT1G54790.2 35.190 395 197 9 223 563 11 400 1.47e-69 230
Msa0144010 AT1G54790.2 39.645 169 89 4 3 159 122 289 1.92e-27 115
Msa0144010 AT1G09390.1 36.968 376 195 9 216 565 9 368 1.78e-66 221
Msa0144010 AT1G09390.1 32.520 246 131 3 2 212 123 368 9.41e-33 129
Msa0144010 AT4G01130.2 44.203 276 141 7 221 489 12 281 6.78e-63 210
Msa0144010 AT4G01130.2 32.716 162 91 6 3 150 127 284 7.83e-17 82.4
Msa0144010 AT3G62280.1 38.202 356 157 14 242 562 35 362 1.36e-61 207
Msa0144010 AT3G62280.1 32.377 244 124 7 5 210 123 363 6.47e-25 107
Msa0144010 AT1G56670.2 40.727 275 151 5 217 489 16 280 8.16e-55 187
Msa0144010 AT1G56670.2 35.329 167 99 1 4 161 128 294 3.05e-25 106
Msa0144010 AT1G28600.1 34.896 384 188 14 221 567 14 372 3.99e-48 172
Msa0144010 AT1G28600.1 30.986 213 106 6 49 222 170 380 1.81e-18 88.2
Msa0144010 AT4G01130.3 36.667 300 154 9 296 565 1 294 4.10e-48 169
Msa0144010 AT4G01130.3 28.627 255 136 5 3 212 41 294 7.90e-24 102
Msa0144010 AT3G62280.2 40.769 260 122 10 242 489 35 274 5.76e-47 166
Msa0144010 AT3G62280.2 34.783 161 90 4 5 153 123 280 3.13e-17 83.2
Msa0144010 AT1G28590.1 32.095 377 206 9 217 558 10 371 2.86e-44 162
Msa0144010 AT1G28590.1 26.531 196 105 5 49 205 176 371 6.38e-11 65.1
Msa0144010 AT1G31550.1 33.241 361 185 12 240 565 33 372 6.86e-44 161
Msa0144010 AT1G31550.1 26.943 193 105 6 49 205 175 367 4.21e-11 65.5
Msa0144010 AT1G31550.2 32.967 364 185 12 240 565 33 375 1.66e-43 160
Msa0144010 AT1G28580.1 31.606 386 208 11 219 565 9 377 2.40e-43 159
Msa0144010 AT1G28640.1 31.606 386 207 11 219 565 8 375 4.96e-43 158
Msa0144010 AT1G28570.1 31.186 388 209 12 217 565 6 374 6.78e-43 158
Msa0144010 AT1G28670.1 33.420 386 201 13 219 565 8 376 7.69e-43 158
Msa0144010 AT1G28610.2 33.245 376 196 12 219 557 7 364 2.40e-42 156
Msa0144010 AT2G27360.1 32.021 381 203 12 216 558 7 369 7.28e-42 155
Msa0144010 AT1G28660.2 32.041 387 203 14 219 565 8 374 2.97e-41 153
Msa0144010 AT1G28650.1 31.538 390 209 12 217 565 5 377 3.99e-41 153
Msa0144010 AT1G28660.1 32.216 388 202 15 219 565 8 375 2.24e-40 151
Msa0144010 AT5G45910.1 32.199 382 196 15 219 557 8 369 4.34e-39 147
Msa0144010 AT3G48460.1 28.796 382 206 10 220 560 15 371 5.24e-37 142
Msa0144010 AT5G40990.1 29.565 345 190 11 243 555 37 360 1.63e-27 114
Msa0144010 AT3G16370.1 30.793 328 187 14 242 545 29 340 3.70e-27 113
Msa0144010 AT1G28580.2 27.832 309 177 8 286 565 5 296 1.03e-26 110
Msa0144010 AT5G03820.1 27.697 343 187 14 242 549 32 348 7.86e-26 109
Msa0144010 AT4G26790.1 28.324 346 181 16 241 549 27 342 1.11e-25 108
Msa0144010 AT4G26790.2 28.324 346 181 16 241 549 27 342 1.11e-25 108
Msa0144010 AT5G03820.2 27.697 343 187 14 242 549 60 376 1.15e-25 109
Msa0144010 AT4G10950.2 28.530 347 191 14 242 556 70 391 3.76e-25 108
Msa0144010 AT1G20130.2 28.488 344 190 13 237 545 178 500 1.77e-23 104
Msa0144010 AT1G20130.1 28.488 344 190 13 237 545 198 520 1.77e-23 104
Msa0144010 AT2G42990.1 26.997 363 199 15 221 548 9 340 2.10e-23 102
Msa0144010 AT1G71120.1 27.042 355 197 12 230 552 18 342 4.16e-23 101
Msa0144010 AT5G03810.1 25.656 343 193 13 242 549 29 344 5.81e-23 100
Msa0144010 AT5G63170.1 31.541 279 155 11 219 482 4 261 6.03e-23 100
Msa0144010 AT3G14225.2 29.480 346 183 11 243 552 37 357 7.96e-23 100
Msa0144010 AT5G22810.1 29.326 341 185 14 242 549 33 350 8.45e-23 100
Msa0144010 AT1G53920.1 27.350 351 204 12 219 539 22 351 8.56e-23 100
Msa0144010 AT4G10950.1 28.242 347 188 15 242 556 70 387 1.28e-22 100
Msa0144010 AT3G14225.1 30.347 346 184 13 243 552 37 361 1.38e-22 100
Msa0144010 AT5G42170.1 27.778 342 191 13 238 549 45 360 2.45e-22 99.4
Msa0144010 AT1G59406.1 27.195 353 217 12 219 549 6 340 2.92e-22 99.0
Msa0144010 AT1G59030.1 27.195 353 217 12 219 549 6 340 2.92e-22 99.0
Msa0144010 AT1G58725.1 27.195 353 217 12 219 549 6 340 2.92e-22 99.0
Msa0144010 AT5G15720.1 26.611 357 198 12 242 561 29 358 2.99e-22 99.0
Msa0144010 AT3G04290.1 29.947 374 190 17 218 553 7 346 5.56e-22 98.2
Msa0144010 AT1G28600.2 37.379 206 104 8 221 416 14 204 6.41e-22 95.1
Msa0144010 AT2G23540.1 25.414 362 192 14 237 552 42 371 1.53e-21 97.4
Msa0144010 AT1G29670.1 25.496 353 227 12 214 545 2 339 1.78e-21 96.7
Msa0144010 AT1G58520.3 26.946 334 197 11 238 549 25 333 4.47e-21 95.1
Msa0144010 AT1G58525.1 26.946 334 197 11 238 549 25 333 4.47e-21 95.1
Msa0144010 AT1G75900.1 26.911 327 199 13 242 545 42 351 4.61e-21 95.5
Msa0144010 AT1G29670.2 26.087 345 219 12 222 545 78 407 4.61e-21 96.3
Msa0144010 AT1G71691.2 27.811 338 203 14 231 545 41 360 5.70e-21 95.5
Msa0144010 AT4G28780.1 27.954 347 185 15 243 553 31 348 5.87e-21 95.1
Msa0144010 AT5G45670.1 24.857 350 230 9 217 545 1 338 8.01e-21 94.7
Msa0144010 AT4G18970.1 25.231 325 208 9 242 545 27 337 8.21e-21 94.7
Msa0144010 AT4G18970.2 25.077 323 211 8 242 545 27 337 1.02e-20 95.1
Msa0144010 AT3G50400.1 26.404 356 189 16 241 552 32 358 1.11e-20 94.7
Msa0144010 AT5G08460.1 26.301 346 217 10 241 561 47 379 2.04e-20 94.0
Msa0144010 AT1G53940.2 28.406 345 194 12 243 555 39 362 2.09e-20 94.0
Msa0144010 AT3G43550.1 29.151 271 162 9 223 481 10 262 2.29e-20 92.0
Msa0144010 AT5G33370.1 27.429 350 183 15 243 553 30 347 2.31e-20 93.6
Msa0144010 AT3G53100.1 26.703 367 211 16 215 549 2 342 3.12e-20 92.8
Msa0144010 AT1G06990.1 26.647 334 187 14 241 541 35 343 3.14e-20 93.2
Msa0144010 AT1G73610.1 26.567 335 194 11 238 549 30 335 3.71e-20 92.4
Msa0144010 AT2G04570.1 25.272 368 215 14 219 554 7 346 4.23e-20 92.4
Msa0144010 AT2G30310.1 28.228 333 196 14 235 541 26 341 5.57e-20 92.4
Msa0144010 AT1G28610.1 36.058 208 113 7 219 416 7 204 6.70e-20 89.7
Msa0144010 AT1G33811.1 25.070 359 226 11 215 545 5 348 1.54e-19 91.3
Msa0144010 AT1G53990.1 28.161 348 186 14 243 558 35 350 1.92e-19 90.9
Msa0144010 AT1G54020.2 25.215 349 198 12 222 543 12 324 2.14e-19 90.9
Msa0144010 AT1G54030.1 28.276 290 162 10 267 542 80 337 2.91e-19 90.9
Msa0144010 AT5G45950.1 24.926 337 192 14 243 548 40 346 4.61e-19 89.4
Msa0144010 AT2G19060.1 27.164 335 203 13 242 557 29 341 6.14e-19 89.0
Msa0144010 AT1G71250.1 26.400 375 232 12 209 558 4 359 6.52e-19 89.4
Msa0144010 AT1G71691.3 28.044 271 166 10 231 489 41 294 7.58e-19 88.2
Msa0144010 AT2G30220.1 27.660 329 195 15 241 543 31 342 1.24e-18 88.2
Msa0144010 AT2G19010.1 25.697 323 197 10 242 545 29 327 1.77e-18 87.4
Msa0144010 AT2G19010.2 25.697 323 197 10 242 545 59 357 2.24e-18 87.8
Msa0144010 AT2G03980.2 26.748 329 194 15 240 542 40 347 4.71e-18 86.7
Msa0144010 AT2G03980.3 26.748 329 194 15 240 542 40 347 4.71e-18 86.7
Msa0144010 AT2G03980.1 26.748 329 194 15 240 542 40 347 4.71e-18 86.7
Msa0144010 AT2G03980.4 26.748 329 194 15 240 542 40 347 4.71e-18 86.7
Msa0144010 AT1G20120.1 28.090 356 196 15 236 556 71 401 5.83e-18 86.7
Msa0144010 AT2G24560.1 25.982 331 202 13 235 539 26 339 1.23e-17 85.1
Msa0144010 AT1G58430.1 27.134 328 190 14 241 539 33 340 1.37e-17 85.1
Msa0144010 AT5G15720.2 27.376 263 158 8 242 488 29 274 1.71e-17 84.0
Msa0144010 AT1G29660.1 25.000 352 230 11 213 545 4 340 2.17e-17 84.7
Msa0144010 AT1G28570.2 25.974 231 137 6 361 565 80 302 2.21e-17 84.0
Msa0144010 AT5G37690.1 26.536 358 218 13 217 549 1 338 3.00e-17 84.0
Msa0144010 AT1G28570.3 26.316 209 121 5 382 565 11 211 3.05e-17 81.6
Msa0144010 AT2G31540.1 26.074 349 212 14 235 554 27 358 4.43e-17 83.6
Msa0144010 AT1G23500.1 30.116 259 151 10 243 489 35 275 5.91e-17 82.8
Msa0144010 AT1G75930.1 26.374 273 172 9 213 474 2 256 6.17e-17 82.8
Msa0144010 AT2G24560.2 27.407 270 163 10 235 488 26 278 6.17e-17 82.4
Msa0144010 AT1G53940.1 29.893 281 162 9 221 481 7 272 7.35e-17 82.0
Msa0144010 AT1G75920.2 27.701 361 219 16 213 552 2 341 1.13e-16 82.0
Msa0144010 AT2G19050.1 25.449 334 208 9 242 557 30 340 1.63e-16 81.6
Msa0144010 AT2G19050.1 24.775 222 128 5 16 204 125 340 8.98e-11 64.3
Msa0144010 AT2G04020.1 29.004 231 139 8 240 459 40 256 2.08e-16 79.7
Msa0144010 AT1G20135.1 25.648 347 213 11 220 546 6 327 2.88e-16 80.5
Msa0144010 AT4G30140.1 27.273 330 201 10 242 557 32 336 3.96e-16 80.5
Msa0144010 AT2G40250.1 24.159 327 211 13 243 545 36 349 1.02e-15 79.3
Msa0144010 AT1G54030.2 29.412 221 118 7 267 481 80 268 1.25e-15 78.6
Msa0144010 AT2G04020.2 29.907 214 126 7 240 443 40 239 1.30e-15 78.6
Msa0144010 AT1G75880.2 25.698 358 218 14 222 549 26 365 2.22e-15 78.6
Msa0144010 AT2G19050.2 27.237 257 158 7 242 489 30 266 2.82e-15 77.0
Msa0144010 AT5G41890.1 26.571 350 192 16 245 552 33 359 3.08e-15 78.2
Msa0144010 AT5G45960.1 26.984 252 157 9 243 481 47 284 3.56e-15 77.8
Msa0144010 AT1G75880.1 25.627 359 218 15 222 549 26 366 4.11e-15 77.8
Msa0144010 AT4G16230.1 30.682 264 143 13 219 462 4 247 9.46e-15 74.7
Msa0144010 AT1G54000.1 23.077 364 200 13 219 544 12 333 1.00e-14 76.6
Msa0144010 AT5G03980.1 26.842 190 103 4 382 545 127 306 1.02e-14 75.9
Msa0144010 AT5G03980.1 28.022 182 91 6 49 192 127 306 7.23e-14 73.2
Msa0144010 AT1G75890.2 26.000 350 214 14 224 545 25 357 1.05e-14 76.3
Msa0144010 AT1G75890.3 26.000 350 214 14 224 545 54 386 1.08e-14 76.6
Msa0144010 AT5G15720.3 24.510 306 171 10 290 561 48 327 1.23e-14 75.9
Msa0144010 AT1G54010.1 23.120 359 206 11 219 544 12 333 1.74e-14 75.9
Msa0144010 AT1G75890.1 25.414 362 214 16 224 545 25 370 1.43e-13 73.2
Msa0144010 AT1G71691.1 25.993 277 169 12 287 545 1 259 4.65e-13 70.5
Msa0144010 AT5G03600.1 24.324 333 187 14 242 546 13 308 7.94e-13 70.1
Msa0144010 AT5G03600.2 24.324 333 187 14 242 546 48 343 1.04e-12 70.1
Msa0144010 AT5G37690.2 25.419 358 214 14 217 549 1 330 1.87e-12 69.3
Msa0144010 AT1G74460.1 26.644 289 172 12 278 545 63 332 3.05e-12 68.9
Msa0144010 AT3G14220.1 23.615 343 194 15 242 552 31 337 2.36e-11 66.2

Find 138 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTTATTGGTGGTTATTT+TGG 0.124216 1_4:-3286079 Msa0144010:CDS
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1_4:+3286942 None:intergenic
TACCCAAAACAAAGTTTATT+AGG 0.181436 1_4:-3292221 Msa0144010:CDS
TGGATGTGTGCCTTTAATTT+TGG 0.224209 1_4:-3291205 Msa0144010:CDS
AACCATCTACTAGAATAATA+TGG 0.227325 1_4:-3290739 Msa0144010:CDS
ATCCCTAATAAACTTTGTTT+TGG 0.232433 1_4:+3292218 None:intergenic
ATTTAGGGGCTAGGTCATTT+TGG 0.232450 1_4:-3285218 Msa0144010:CDS
ACCTATATCAAATGTGTATA+AGG 0.246812 1_4:+3292020 None:intergenic
TGGTTGCACTCCTACGATTT+TGG 0.248180 1_4:-3285175 Msa0144010:CDS
TTTGGAATAATAATCTTCTT+TGG 0.255011 1_4:+3292044 None:intergenic
ATCTCTAATGAGATTTGTTT+TGG 0.255196 1_4:+3286297 None:intergenic
TATGAAATTGTTTACTATAT+CGG 0.256970 1_4:+3286021 None:intergenic
ATCTAGAATATATACAATTT+AGG 0.259358 1_4:-3285234 Msa0144010:intron
AATTAGGGGCCAGGTCATTT+TGG 0.264269 1_4:-3291248 Msa0144010:CDS
TACTGAATCTGAAGGGAAAA+TGG 0.272154 1_4:+3292264 None:intergenic
GGAAAATTGGCCAAAATTAA+AGG 0.273646 1_4:+3291195 None:intergenic
TATGAAATTCTTTACTATAT+CGG 0.274874 1_4:+3291933 None:intergenic
ATCTAGAATATATACAAATT+AGG 0.275565 1_4:-3291264 Msa0144010:intron
ACCAATATCAAATGTGTATA+AGG 0.276105 1_4:+3286108 None:intergenic
AATTCTTTGTAGCAAATATT+GGG 0.277876 1_4:+3286943 None:intergenic
TCTAGAATATATACAAATTA+GGG 0.278589 1_4:-3291263 Msa0144010:intron
CTTTATAGCAGATGGAAAAT+TGG 0.280511 1_4:+3291182 None:intergenic
TCTAGAATATATACAATTTA+GGG 0.282298 1_4:-3285233 Msa0144010:intron
CATGCCATATCTAGAGAAAT+AGG 0.282392 1_4:+3284517 None:intergenic
TACTGAATTTGAAGAGAAAA+TGG 0.283865 1_4:+3286343 None:intergenic
ATCCTCCCATTCCACTAAAT+AGG 0.284287 1_4:-3290646 Msa0144010:CDS
TTGGAATAATAATCTTCTTT+GGG 0.286703 1_4:+3292045 None:intergenic
TCCCATATTATTCTAGTAGA+TGG 0.294746 1_4:+3290737 None:intergenic
CGAATCATTATTGATTTCAT+AGG 0.296923 1_4:-3286786 Msa0144010:intron
GCCTTATACACATTTGATAT+TGG 0.302387 1_4:-3286109 Msa0144010:CDS
TCCCAAATGATTCTAGTAGA+TGG 0.307386 1_4:+3284613 None:intergenic
CCTAATAGTATTATACCTAA+TGG 0.308302 1_4:-3286376 Msa0144010:CDS
ATTAAGATATGGACTTAGAT+AGG 0.318215 1_4:+3286462 None:intergenic
ATTAAGATATGGACTTAGAT+AGG 0.318215 1_4:+3292383 None:intergenic
ACAAATCTCATTAGAGATAA+AGG 0.323654 1_4:-3286292 Msa0144010:intron
CCATTAGGTATAATGTTGTT+AGG 0.325094 1_4:+3292297 None:intergenic
GGAGAAATCATAAACATAAA+TGG 0.328429 1_4:-3290791 Msa0144010:CDS
ACCCAAAACAAAGTTTATTA+GGG 0.328879 1_4:-3292220 Msa0144010:CDS
GGAGCAACTATAAACATAAA+TGG 0.333844 1_4:-3284667 Msa0144010:CDS
TAATTTCCCATCTGCAATAA+AGG 0.336425 1_4:-3285151 Msa0144010:CDS
CCATTAGGTATAATACTATT+AGG 0.336828 1_4:+3286376 None:intergenic
ATTGGTCAAAATGATCTTAT+TGG 0.337079 1_4:-3286091 Msa0144010:CDS
AGTCCATATCTTAATTCTCT+TGG 0.339126 1_4:-3286454 Msa0144010:CDS
AGTCCATATCTTAATTCTCT+TGG 0.339126 1_4:-3292375 Msa0144010:five_prime_UTR
TTGTAACATGCCCTATTTAG+TGG 0.352126 1_4:+3290635 None:intergenic
ACCCATCTACTAGAATCATT+TGG 0.354951 1_4:-3284615 Msa0144010:CDS
GTCTTTGATCAAATCTCTAC+TGG 0.362400 1_4:-3284556 Msa0144010:CDS
ATGAAATTCTTTACTATATC+GGG 0.369299 1_4:+3291934 None:intergenic
TCCTCCCATTCCACTAAATA+GGG 0.373102 1_4:-3290645 Msa0144010:CDS
TCCTCCTATTTCTCTAGATA+TGG 0.373294 1_4:-3284521 Msa0144010:CDS
ATCAAATGTGTATAAGGCTT+TGG 0.374053 1_4:+3292026 None:intergenic
TTTCCTGCCATATTTAGCTT+TGG 0.374076 1_4:-3286915 Msa0144010:CDS
ATGAAATTGTTTACTATATC+GGG 0.374442 1_4:+3286022 None:intergenic
TGAAGCACCAAAGCTAAATA+TGG 0.376452 1_4:+3286908 None:intergenic
CCTAACAACATTATACCTAA+TGG 0.377474 1_4:-3292297 Msa0144010:five_prime_UTR
CCCATCTACTAGAATCATTT+GGG 0.387794 1_4:-3284614 Msa0144010:CDS
TTAAAACAAATTTAAATATG+AGG 0.391253 1_4:+3292518 None:intergenic
AAACGTTGACACTGGTGGTT+TGG 0.395539 1_4:-3286886 Msa0144010:CDS
AATTATTTCTATATTTATGA+AGG 0.400759 1_4:-3292453 Msa0144010:five_prime_UTR
GTCCATATCTTAATTCTCTT+GGG 0.407003 1_4:-3286453 Msa0144010:CDS
GACCCAAGAGAATTAAGATA+TGG 0.409299 1_4:+3292372 None:intergenic
ACAAAGTTTATTAGGGATCA+AGG 0.410667 1_4:-3292213 Msa0144010:intron
GTCCATATCTTAATTCTCTT+GGG 0.414439 1_4:-3292374 Msa0144010:five_prime_UTR
GTAATTTCAGCACAGAGCTT+TGG 0.415339 1_4:-3286490 Msa0144010:intron
AATGGACTAAATATCCCATT+AGG 0.416788 1_4:+3286361 None:intergenic
CTAATAGTATTATACCTAAT+GGG 0.423195 1_4:-3286375 Msa0144010:CDS
CAAGCACCACCTTCTCCATA+TGG 0.425672 1_4:-3286852 Msa0144010:CDS
TTGTATATGTTGAGCTTACA+TGG 0.426780 1_4:-3292491 Msa0144010:five_prime_UTR
ATACACAACACTGGACCAAT+TGG 0.429145 1_4:-3291225 Msa0144010:CDS
AATGGTACAAACATTGTTGT+TGG 0.431505 1_4:-3290773 Msa0144010:CDS
TGAAAATATGTCTCTCCATA+TGG 0.436936 1_4:+3286837 None:intergenic
TAACTATCCTTTATTGCAGA+TGG 0.441895 1_4:+3285144 None:intergenic
ACCATCTACTAGAATAATAT+GGG 0.442115 1_4:-3290738 Msa0144010:CDS
CATGGTGCAAACTTCGCAAC+AGG 0.459101 1_4:-3286418 Msa0144010:CDS
AATGGACTGAACATTCCATT+AGG 0.460673 1_4:+3292282 None:intergenic
GCCTTATACACATTTGATAT+AGG 0.463073 1_4:-3292021 Msa0144010:CDS
GACCCAAGAGAATTAAGATA+TGG 0.468859 1_4:+3286451 None:intergenic
TGGCTATCCTTTATAGCAGA+TGG 0.469012 1_4:+3291174 None:intergenic
CATGCCCTATTTAGTGGAAT+GGG 0.472312 1_4:+3290641 None:intergenic
ATATATACAATTTAGGGGCT+AGG 0.474694 1_4:-3285227 Msa0144010:CDS
GGTCAAAATGATCTTACTGC+TGG 0.478092 1_4:-3292000 Msa0144010:CDS
ATTAAAGGCACACATCCAAT+TGG 0.488389 1_4:+3291210 None:intergenic
ACATGCCCTATTTAGTGGAA+TGG 0.489175 1_4:+3290640 None:intergenic
CCCAAATGATTCTAGTAGAT+GGG 0.491642 1_4:+3284614 None:intergenic
GGTCAAAATGATCTTATTGG+TGG 0.492651 1_4:-3286088 Msa0144010:CDS
ATCAAATGTGTATAAGGCGT+TGG 0.500122 1_4:+3286114 None:intergenic
GATCGCTACGAAGTTGAGCT+AGG 0.500570 1_4:+3285061 None:intergenic
TGTATTGCTTTGCACAACCT+TGG 0.503056 1_4:+3291154 None:intergenic
TTAAGATATGGACTTAGATA+GGG 0.503696 1_4:+3286463 None:intergenic
TTAAGATATGGACTTAGATA+GGG 0.503696 1_4:+3292384 None:intergenic
TGGAGAAGGTGGTGCTTGAA+AGG 0.512450 1_4:+3286857 None:intergenic
GATCCACACGAAGTTGAGCT+AGG 0.516606 1_4:+3291091 None:intergenic
CACGTGGCATGTTGTGGCTA+TGG 0.516845 1_4:-3284718 Msa0144010:CDS
ATATATACAAATTAGGGGCC+AGG 0.517339 1_4:-3291257 Msa0144010:CDS
TACAACATTCATGTTGGATG+TGG 0.534376 1_4:-3284688 Msa0144010:CDS
AACTATCCTTTATTGCAGAT+GGG 0.538312 1_4:+3285145 None:intergenic
TCTGCAATAAAGGATAGTTA+TGG 0.538464 1_4:-3285141 Msa0144010:CDS
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1_4:+3286944 None:intergenic
ATTATTTCTATATTTATGAA+GGG 0.546660 1_4:-3292452 Msa0144010:five_prime_UTR
CTTGGGTCTAACTTCACACA+TGG 0.547798 1_4:-3286436 Msa0144010:CDS
GTTAGCTGTCTCTGTGAAGT+GGG 0.552378 1_4:+3284585 None:intergenic
GGAAAGTACAACATTCATGT+TGG 0.552770 1_4:-3284694 Msa0144010:CDS
ATCGTAGGAGTGCAACCACT+TGG 0.554426 1_4:+3285180 None:intergenic
TGGAATAATAATCTTCTTTG+GGG 0.555591 1_4:+3292046 None:intergenic
ACATATGTGATTGCAGCTAG+TGG 0.560723 1_4:+3291066 None:intergenic
GGTGCAAACTTTGCAACAGC+AGG 0.564350 1_4:-3292336 Msa0144010:five_prime_UTR
GCACCAAAGCTAAATATGGC+AGG 0.569703 1_4:+3286912 None:intergenic
GGTGCTTCAAACGTTGACAC+TGG 0.571755 1_4:-3286894 Msa0144010:CDS
CTTCCACACGTGGCATGTTG+TGG 0.572010 1_4:-3284724 Msa0144010:CDS
GTCTCTCCATATGGAGAAGG+TGG 0.572633 1_4:+3286846 None:intergenic
TCTACTAGAATCATTTGGGA+TGG 0.589271 1_4:-3284610 Msa0144010:CDS
AGCCCTAGCTCAACTTCGTG+TGG 0.589422 1_4:-3291094 Msa0144010:CDS
ATCGCTACGAAGTTGAGCTA+GGG 0.590736 1_4:+3285062 None:intergenic
TATGTCTCTCCATATGGAGA+AGG 0.594276 1_4:+3286843 None:intergenic
TGTTAGCTGTCTCTGTGAAG+TGG 0.596585 1_4:+3284584 None:intergenic
ACATATGCGATTGCAGCAAG+AGG 0.597236 1_4:+3285036 None:intergenic
GCCCTATTTAGTGGAATGGG+AGG 0.602436 1_4:+3290644 None:intergenic
ATCCACACGAAGTTGAGCTA+GGG 0.606515 1_4:+3291092 None:intergenic
AGGATTTGAGCTTCCACACG+TGG 0.609396 1_4:-3284734 Msa0144010:intron
CAATTTCATAGAGAGTATCA+AGG 0.612160 1_4:-3286008 Msa0144010:intron
GGGAAATTAGCCAAAATCGT+AGG 0.621519 1_4:+3285165 None:intergenic
AGCACAATCAAAGACACAAG+TGG 0.622514 1_4:+3286984 None:intergenic
ATTGAATGTACTGAATCTGA+AGG 0.624133 1_4:+3292256 None:intergenic
GCTTCAAACGTTGACACTGG+TGG 0.626758 1_4:-3286891 Msa0144010:CDS
TCAACTGGAAGATACTCTGA+TGG 0.630816 1_4:-3286810 Msa0144010:CDS
TAGCCACAACATGCCACGTG+TGG 0.635122 1_4:+3284721 None:intergenic
TCTACTAGAATAATATGGGA+TGG 0.641361 1_4:-3290734 Msa0144010:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1_4:+3286945 None:intergenic
GGTGCAAACTTCGCAACAGG+AGG 0.653307 1_4:-3286415 Msa0144010:CDS
GCCATATCTAGAGAAATAGG+AGG 0.655655 1_4:+3284520 None:intergenic
GTGGCATGTTGTGGCTATGG+AGG 0.666464 1_4:-3284715 Msa0144010:CDS
CTAGAATATATACAATTTAG+GGG 0.671423 1_4:-3285232 Msa0144010:intron
TTGAATGTACTGAATCTGAA+GGG 0.676543 1_4:+3292257 None:intergenic
TCTGCTATAAAGGATAGCCA+AGG 0.676832 1_4:-3291171 Msa0144010:CDS
CTAGAATATATACAAATTAG+GGG 0.698873 1_4:-3291262 Msa0144010:intron
ATACACAACACAGGGCCAAG+TGG 0.718066 1_4:-3285195 Msa0144010:CDS
GTTGTGTATCCAAAATGACC+TGG 0.720607 1_4:+3291239 None:intergenic
GGATGGTACACATTACACAG+AGG 0.801423 1_4:-3290717 Msa0144010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTATTTTATTTTTTTG+AGG - chr1_4:3284532-3284551 Msa0144010:CDS 10.0%
!!! TTTTACTTAACAAAAAAAAA+AGG + chr1_4:3284600-3284619 None:intergenic 10.0%
!! TTAAAACAAATTTAAATATG+AGG + chr1_4:3284662-3284681 None:intergenic 10.0%
!!! AATTATTTCTATATTTATGA+AGG - chr1_4:3284724-3284743 Msa0144010:CDS 10.0%
!!! ATTATTTCTATATTTATGAA+GGG - chr1_4:3284725-3284744 Msa0144010:CDS 10.0%
!! GAAATTAAAAAAGAAAAAAT+TGG + chr1_4:3285073-3285092 None:intergenic 10.0%
!!! ATTAAACAAAATTTTATGTT+TGG - chr1_4:3285427-3285446 Msa0144010:intron 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG - chr1_4:3286059-3286078 Msa0144010:CDS 10.0%
!! TAAAGAATAAAAAGAATTAA+TGG + chr1_4:3288836-3288855 None:intergenic 10.0%
!! AATTTAATTAAGGAAAATTT+AGG + chr1_4:3289465-3289484 None:intergenic 10.0%
!!! ATCTCATATTTTTTTATTTA+TGG - chr1_4:3289289-3289308 Msa0144010:intron 10.0%
!! AATTTAATTAAGGAAAATTT+AGG - chr1_4:3289465-3289484 Msa0144010:intron 10.0%
!! TATTAAACAATAAACATATT+CGG - chr1_4:3290055-3290074 Msa0144010:intron 10.0%
!! ATTAAAATAGAATATGTAAT+GGG + chr1_4:3290474-3290493 None:intergenic 10.0%
!!! TAATATTTTTTAAATCACAA+TGG - chr1_4:3292325-3292344 Msa0144010:five_prime_UTR 10.0%
!!! GTAATTTTACTAAAATACTA+TGG - chr1_4:3284624-3284643 Msa0144010:CDS 15.0%
!! TATGAAATTCTTTACTATAT+CGG + chr1_4:3285247-3285266 None:intergenic 15.0%
!! ATAATTACTAAAATAGACAT+AGG - chr1_4:3285480-3285499 Msa0144010:intron 15.0%
!! ATTAATAAAATGCAACTTAA+TGG - chr1_4:3285888-3285907 Msa0144010:intron 15.0%
!!! ATCTAGAATATATACAAATT+AGG - chr1_4:3285913-3285932 Msa0144010:intron 15.0%
!!! TCTAGAATATATACAAATTA+GGG - chr1_4:3285914-3285933 Msa0144010:intron 15.0%
!! TTAAATCTTCATTAATATGT+AGG - chr1_4:3286293-3286312 Msa0144010:CDS 15.0%
!! TTCTTTATATTAGACATATA+TGG - chr1_4:3286641-3286660 Msa0144010:intron 15.0%
!! TATATTTACAACAAGTTTAT+TGG - chr1_4:3286698-3286717 Msa0144010:intron 15.0%
!! ATACTTATTAAATCAACTTA+AGG - chr1_4:3287477-3287496 Msa0144010:intron 15.0%
!! TACTTATTAAATCAACTTAA+GGG - chr1_4:3287478-3287497 Msa0144010:intron 15.0%
!! ATATGATAAATCAAACTTAA+GGG - chr1_4:3287514-3287533 Msa0144010:intron 15.0%
!!! ATTACTAATTTGTTTCAAAA+TGG + chr1_4:3287757-3287776 None:intergenic 15.0%
!! AAATTAGTAATTTCTATGAA+TGG - chr1_4:3287766-3287785 Msa0144010:intron 15.0%
!!! TAAACAAAATTTCACTTTTT+AGG + chr1_4:3288356-3288375 None:intergenic 15.0%
!!! TTCAACACATATTTTTTTAT+TGG - chr1_4:3288554-3288573 Msa0144010:intron 15.0%
!!! TTAATTCTTTAATCCTTTTA+AGG - chr1_4:3288880-3288899 Msa0144010:intron 15.0%
!! ATTATGTTTAATTCCTTAAA+AGG + chr1_4:3288896-3288915 None:intergenic 15.0%
!!! TTTTATTGAATCATCATTTT+AGG + chr1_4:3289007-3289026 None:intergenic 15.0%
!!! GTTTTATTTGTACAAAAAAA+AGG + chr1_4:3289198-3289217 None:intergenic 15.0%
!!! TTTTTTTAAGAATAGAAAAG+TGG + chr1_4:3289220-3289239 None:intergenic 15.0%
!! ATTGAATATGTAGTAATTAT+AGG - chr1_4:3289266-3289285 Msa0144010:intron 15.0%
!!! ATTTAGGTTTAAAGAATTAA+TGG - chr1_4:3289481-3289500 Msa0144010:intron 15.0%
!! GTCAAAAAAAAAAAAAAAAC+AGG - chr1_4:3289509-3289528 Msa0144010:intron 15.0%
!!! GACATTTTATCAAAAAAAAT+TGG + chr1_4:3289864-3289883 None:intergenic 15.0%
!! GATTAAAATAGAATATGTAA+TGG + chr1_4:3290475-3290494 None:intergenic 15.0%
!!! TATTTCAAAATTTTCTTATC+AGG - chr1_4:3290999-3291018 Msa0144010:intron 15.0%
!! TATGAAATTGTTTACTATAT+CGG + chr1_4:3291159-3291178 None:intergenic 15.0%
!! AAAAAAAAACATTATAGTTG+AGG - chr1_4:3291396-3291415 Msa0144010:intron 15.0%
!!! ATCTAGAATATATACAATTT+AGG - chr1_4:3291943-3291962 Msa0144010:intron 15.0%
!!! TCTAGAATATATACAATTTA+GGG - chr1_4:3291944-3291963 Msa0144010:intron 15.0%
!!! GTATTTTAATTTAAAGTTGA+AGG - chr1_4:3292089-3292108 Msa0144010:intron 15.0%
!!! TTTTTTTGGATTTTGAAAAA+GGG + chr1_4:3292190-3292209 None:intergenic 15.0%
!!! ATTTTTTTGGATTTTGAAAA+AGG + chr1_4:3292191-3292210 None:intergenic 15.0%
!! TTTCAAAATCCAAAAAAATA+TGG - chr1_4:3292192-3292211 Msa0144010:intron 15.0%
!!! TATATGTTATTGATTTGATT+TGG - chr1_4:3292403-3292422 Msa0144010:five_prime_UTR 15.0%
!! TTGGAATAATAATCTTCTTT+GGG + chr1_4:3285135-3285154 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG + chr1_4:3285136-3285155 None:intergenic 20.0%
!! ATGAAATTCTTTACTATATC+GGG + chr1_4:3285246-3285265 None:intergenic 20.0%
!! TAAAGAATGAGAATTGATAA+AGG - chr1_4:3285517-3285536 Msa0144010:intron 20.0%
!! GATTATGTAATTGTATTGTT+TGG + chr1_4:3285778-3285797 None:intergenic 20.0%
!! CTAGAATATATACAAATTAG+GGG - chr1_4:3285915-3285934 Msa0144010:intron 20.0%
!! TCCAAAATCCAAAAAAAATA+CGG - chr1_4:3286163-3286182 Msa0144010:intron 20.0%
!!! ATCGATCATATTTTTTAGTT+AGG - chr1_4:3286199-3286218 Msa0144010:intron 20.0%
!!! TCGATCATATTTTTTAGTTA+GGG - chr1_4:3286200-3286219 Msa0144010:intron 20.0%
!!! TTTTTTAGTTAGGGTATATT+TGG - chr1_4:3286209-3286228 Msa0144010:intron 20.0%
!!! TTTCATTGATAATTCCAAAA+AGG + chr1_4:3286678-3286697 None:intergenic 20.0%
!! TATGTTTACATCAAGAATAT+TGG - chr1_4:3286766-3286785 Msa0144010:intron 20.0%
!! ATTTGTAATGATCTAATGAA+GGG + chr1_4:3287090-3287109 None:intergenic 20.0%
!! TCTATAAATAAAACACACTA+GGG + chr1_4:3287355-3287374 None:intergenic 20.0%
!! AAATTATGAAATTAAGAACC+CGG + chr1_4:3287446-3287465 None:intergenic 20.0%
!! CATATGATAAATCAAACTTA+AGG - chr1_4:3287513-3287532 Msa0144010:intron 20.0%
!!! TAATGCAAAAGTATAACTAA+GGG + chr1_4:3287615-3287634 None:intergenic 20.0%
!!! TTAGTTATACTTTTGCATTA+GGG - chr1_4:3287615-3287634 Msa0144010:intron 20.0%
!! TTAGTAAAAAAGAACTAATG+TGG - chr1_4:3287638-3287657 Msa0144010:intron 20.0%
!! TAAACCAACTGTTAATTTAA+TGG - chr1_4:3287665-3287684 Msa0144010:intron 20.0%
!!! TATGAATGGATTCTTTAAAT+AGG - chr1_4:3287780-3287799 Msa0144010:intron 20.0%
!! TTTAATTCATAAAATGTCGT+TGG - chr1_4:3287887-3287906 Msa0144010:intron 20.0%
!!! TTTTGTATGGTTTCTTAAAT+TGG + chr1_4:3287962-3287981 None:intergenic 20.0%
!!! GCAATTTTCGTTATTTTTTT+TGG + chr1_4:3288618-3288637 None:intergenic 20.0%
!! AAAAAGAATCGTGTATTTAA+TGG - chr1_4:3289347-3289366 Msa0144010:intron 20.0%
!! AAATCCATATTTCTTCATTA+TGG - chr1_4:3289375-3289394 Msa0144010:intron 20.0%
!! AAAAAAAAAAAACAGGTTTG+AGG - chr1_4:3289516-3289535 Msa0144010:intron 20.0%
!! TTTACTGAGTAAATTTATGT+TGG + chr1_4:3289730-3289749 None:intergenic 20.0%
!! ATGTTTGTATCACTAAAATT+TGG - chr1_4:3289776-3289795 Msa0144010:intron 20.0%
!! ACTAAATACAATTACTAGAA+AGG - chr1_4:3289951-3289970 Msa0144010:intron 20.0%
!! TATTAAGTAGAAGAAAACTT+GGG + chr1_4:3289979-3289998 None:intergenic 20.0%
!!! TATTATTCTTTTGTTTAGTG+AGG + chr1_4:3290015-3290034 None:intergenic 20.0%
!! AATTCTTTGTAGCAAATATT+GGG + chr1_4:3290237-3290256 None:intergenic 20.0%
!! CTAATAGTATTATACCTAAT+GGG - chr1_4:3290802-3290821 Msa0144010:intron 20.0%
!! GAAATAAAGAAAGAAAAAAG+AGG + chr1_4:3290985-3291004 None:intergenic 20.0%
!! ATGAAATTGTTTACTATATC+GGG + chr1_4:3291158-3291177 None:intergenic 20.0%
!! ATCTAATAGTTGAAATCTAT+TGG + chr1_4:3291286-3291305 None:intergenic 20.0%
!! TACTATACTATTTATCAAAG+TGG + chr1_4:3291441-3291460 None:intergenic 20.0%
!! TGTCAATTCAACAAAAATAA+AGG - chr1_4:3291597-3291616 Msa0144010:intron 20.0%
!! TGTATGAATTATATGTATTG+AGG - chr1_4:3291626-3291645 Msa0144010:intron 20.0%
!!! TTCCTATGTTCTTTTTTAAA+TGG - chr1_4:3291663-3291682 Msa0144010:intron 20.0%
!! ATCCATTTAAAAAAGAACAT+AGG + chr1_4:3291668-3291687 None:intergenic 20.0%
!! ATATCATGAGAATCTATTAT+AGG + chr1_4:3291839-3291858 None:intergenic 20.0%
!! CTAGAATATATACAATTTAG+GGG - chr1_4:3291945-3291964 Msa0144010:intron 20.0%
!!! TTTAGCTTACCATATTTTTT+TGG + chr1_4:3292204-3292223 None:intergenic 20.0%
! TTAAGATATGGACTTAGATA+GGG + chr1_4:3284796-3284815 None:intergenic 25.0%
! ATTAAGATATGGACTTAGAT+AGG + chr1_4:3284797-3284816 None:intergenic 25.0%
! TACCCAAAACAAAGTTTATT+AGG - chr1_4:3284956-3284975 Msa0144010:intron 25.0%
! ACCCAAAACAAAGTTTATTA+GGG - chr1_4:3284957-3284976 Msa0144010:intron 25.0%
!!! TCCCTAATAAACTTTGTTTT+GGG + chr1_4:3284961-3284980 None:intergenic 25.0%
!!! ATCCCTAATAAACTTTGTTT+TGG + chr1_4:3284962-3284981 None:intergenic 25.0%
!! GAAATCTTTTAGTGATTTTG+AGG - chr1_4:3285026-3285045 Msa0144010:intron 25.0%
!!! AGTGATTTTGAGGTTAATTA+AGG - chr1_4:3285036-3285055 Msa0144010:intron 25.0%
!! AATTTCAAAATTTTCTTGCC+AGG - chr1_4:3285087-3285106 Msa0144010:CDS 25.0%
! TGGAATAATAATCTTCTTTG+GGG + chr1_4:3285134-3285153 None:intergenic 25.0%
! ACCTATATCAAATGTGTATA+AGG + chr1_4:3285160-3285179 None:intergenic 25.0%
! GAATTTCATAGAGAATATCA+AGG - chr1_4:3285257-3285276 Msa0144010:intron 25.0%
!! TGAGAGAATTGATTTATGTT+TGG - chr1_4:3285385-3285404 Msa0144010:intron 25.0%
! ACTAAAATAGACATAGGTAA+AGG - chr1_4:3285486-3285505 Msa0144010:intron 25.0%
! TGTAATTGTATTGTTTGGTT+TGG + chr1_4:3285773-3285792 None:intergenic 25.0%
!!! ACCGTATTTTTTTTGGATTT+TGG + chr1_4:3286167-3286186 None:intergenic 25.0%
! GGAGAAATCATAAACATAAA+TGG - chr1_4:3286386-3286405 Msa0144010:CDS 25.0%
! AACCATCTACTAGAATAATA+TGG - chr1_4:3286438-3286457 Msa0144010:CDS 25.0%
! ACCATCTACTAGAATAATAT+GGG - chr1_4:3286439-3286458 Msa0144010:CDS 25.0%
! AGAACAACTTTACATTCTAA+AGG - chr1_4:3286890-3286909 Msa0144010:CDS 25.0%
! AACAAGAATAATTCTCTGAA+AGG - chr1_4:3286979-3286998 Msa0144010:CDS 25.0%
!! AATCAATTTTCCCTTCATTT+TGG + chr1_4:3287027-3287046 None:intergenic 25.0%
! CATTTGTAATGATCTAATGA+AGG + chr1_4:3287091-3287110 None:intergenic 25.0%
!! TGAGAGAAATTTTGTTCATT+TGG + chr1_4:3287238-3287257 None:intergenic 25.0%
! GTCTATAAATAAAACACACT+AGG + chr1_4:3287356-3287375 None:intergenic 25.0%
!! ACTTTTATCTTAGTCAAGTT+AGG - chr1_4:3287580-3287599 Msa0144010:intron 25.0%
!! CTAATGCAAAAGTATAACTA+AGG + chr1_4:3287616-3287635 None:intergenic 25.0%
!! CTTAGTTATACTTTTGCATT+AGG - chr1_4:3287614-3287633 Msa0144010:intron 25.0%
!! TAGTCTGGTTTAATTCAAAA+CGG + chr1_4:3287713-3287732 None:intergenic 25.0%
! GTTTCAAAATGGTTCATTAA+CGG + chr1_4:3287746-3287765 None:intergenic 25.0%
!! TTAAATCGAACTCTATTTTC+TGG + chr1_4:3288010-3288029 None:intergenic 25.0%
!!! TCGATTTAAAATGTCGATTT+AGG - chr1_4:3288021-3288040 Msa0144010:intron 25.0%
!!! TTAAAATGTCGATTTAGGTT+TGG - chr1_4:3288026-3288045 Msa0144010:intron 25.0%
!!! TAAAATGTCGATTTAGGTTT+GGG - chr1_4:3288027-3288046 Msa0144010:intron 25.0%
! AAATTGGACAATATTGTTTG+TGG + chr1_4:3288119-3288138 None:intergenic 25.0%
!!! TTTGGTTTTCTTCCAAAAAT+TGG - chr1_4:3288163-3288182 Msa0144010:intron 25.0%
! TCGTTCATTAAATGAAAAGT+AGG + chr1_4:3288200-3288219 None:intergenic 25.0%
!!! ATTGAACAGTTGATGTATTT+TGG + chr1_4:3288330-3288349 None:intergenic 25.0%
!! GGTTTTTGTCAAAAAAAAAC+AGG + chr1_4:3288815-3288834 None:intergenic 25.0%
! ACGTTTCTTAGTTAAAAAGA+GGG + chr1_4:3289245-3289264 None:intergenic 25.0%
! TTTGTATCACTAAAATTTGG+TGG - chr1_4:3289779-3289798 Msa0144010:intron 25.0%
! CAAAAAAAATTGGACACATA+TGG + chr1_4:3289854-3289873 None:intergenic 25.0%
! TGTATTTAGTTAATCACCTT+TGG + chr1_4:3289941-3289960 None:intergenic 25.0%
! GTATTAAGTAGAAGAAAACT+TGG + chr1_4:3289980-3289999 None:intergenic 25.0%
! ATTCTTTGTAGCAAATATTG+GGG + chr1_4:3290236-3290255 None:intergenic 25.0%
! CAATTCTTTGTAGCAAATAT+TGG + chr1_4:3290238-3290257 None:intergenic 25.0%
!! ACATATTTTCATAGATCAAC+TGG - chr1_4:3290352-3290371 Msa0144010:intron 25.0%
!!! CGAATCATTATTGATTTCAT+AGG - chr1_4:3290391-3290410 Msa0144010:intron 25.0%
! TTAAGATATGGACTTAGATA+GGG + chr1_4:3284796-3284815 None:intergenic 25.0%
! ATTAAGATATGGACTTAGAT+AGG + chr1_4:3284797-3284816 None:intergenic 25.0%
! CCATTAGGTATAATACTATT+AGG + chr1_4:3290804-3290823 None:intergenic 25.0%
! CCTAATAGTATTATACCTAA+TGG - chr1_4:3290801-3290820 Msa0144010:intron 25.0%
! TACTGAATTTGAAGAGAAAA+TGG + chr1_4:3290837-3290856 None:intergenic 25.0%
!!! ATCTCTAATGAGATTTGTTT+TGG + chr1_4:3290883-3290902 None:intergenic 25.0%
! ACAAATCTCATTAGAGATAA+AGG - chr1_4:3290885-3290904 Msa0144010:intron 25.0%
!! TTCAAAATTTTCTTATCAGG+AGG - chr1_4:3291002-3291021 Msa0144010:intron 25.0%
! TTGGAAAAATAGTCTTCTTT+GGG + chr1_4:3291047-3291066 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG + chr1_4:3291072-3291091 None:intergenic 25.0%
! ATTGGTCAAAATGATCTTAT+TGG - chr1_4:3291086-3291105 Msa0144010:CDS 25.0%
! CTAGAAATTACTCATGATAT+CGG + chr1_4:3291750-3291769 None:intergenic 25.0%
!!! TTTGAGATATTTTCAAGTGT+TGG - chr1_4:3291772-3291791 Msa0144010:intron 25.0%
!!! TTACTGTTTGTTTTGATTGA+CGG - chr1_4:3292245-3292264 Msa0144010:CDS 25.0%
! AAATGGTACAAAAATTGTTG+CGG - chr1_4:3292527-3292546 Msa0144010:five_prime_UTR 25.0%
TTGTATATGTTGAGCTTACA+TGG - chr1_4:3284686-3284705 Msa0144010:CDS 30.0%
AGTCCATATCTTAATTCTCT+TGG - chr1_4:3284802-3284821 Msa0144010:intron 30.0%
GTCCATATCTTAATTCTCTT+GGG - chr1_4:3284803-3284822 Msa0144010:intron 30.0%
CCATTAGGTATAATGTTGTT+AGG + chr1_4:3284883-3284902 None:intergenic 30.0%
CCTAACAACATTATACCTAA+TGG - chr1_4:3284880-3284899 Msa0144010:intron 30.0%
TTGAATGTACTGAATCTGAA+GGG + chr1_4:3284923-3284942 None:intergenic 30.0%
ATTGAATGTACTGAATCTGA+AGG + chr1_4:3284924-3284943 None:intergenic 30.0%
ACAAAGTTTATTAGGGATCA+AGG - chr1_4:3284964-3284983 Msa0144010:intron 30.0%
ATCAAATGTGTATAAGGCTT+TGG + chr1_4:3285154-3285173 None:intergenic 30.0%
GCCTTATACACATTTGATAT+AGG - chr1_4:3285156-3285175 Msa0144010:CDS 30.0%
ATATTCAAAGCTGAACCAAA+CGG + chr1_4:3285311-3285330 None:intergenic 30.0%
!!! TTTTTGGCTAGAATTGCTTT+TGG - chr1_4:3285704-3285723 Msa0144010:intron 30.0%
!! CACTGTAGAGAATTGATTTT+GGG - chr1_4:3285727-3285746 Msa0144010:intron 30.0%
GGAAAATTGGCCAAAATTAA+AGG + chr1_4:3285985-3286004 None:intergenic 30.0%
CTTTATAGCAGATGGAAAAT+TGG + chr1_4:3285998-3286017 None:intergenic 30.0%
! CAATTTTCCATCTGCTATAA+AGG - chr1_4:3285996-3286015 Msa0144010:intron 30.0%
!!! TTTTGGAAAAGAGAGTACTT+AGG + chr1_4:3286150-3286169 None:intergenic 30.0%
!!! TTGTCTCACCGTATTTTTTT+TGG + chr1_4:3286174-3286193 None:intergenic 30.0%
AATGGTACAAACATTGTTGT+TGG - chr1_4:3286404-3286423 Msa0144010:CDS 30.0%
TCCCATATTATTCTAGTAGA+TGG + chr1_4:3286443-3286462 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG - chr1_4:3286443-3286462 Msa0144010:CDS 30.0%
CAAGTTTATTGGAACAATCA+TGG - chr1_4:3286709-3286728 Msa0144010:intron 30.0%
TTTATTGGAACAATCATGGA+AGG - chr1_4:3286713-3286732 Msa0144010:intron 30.0%
!!! TGGCAACTTTAGTTTTTACT+TGG - chr1_4:3286786-3286805 Msa0144010:intron 30.0%
!!! TTTAGTTTTTACTTGGCCTT+GGG - chr1_4:3286793-3286812 Msa0144010:CDS 30.0%
TCATCAAAACCAAAAACTAG+AGG + chr1_4:3286856-3286875 None:intergenic 30.0%
!! TAGAATCGATTTGACTACAA+TGG + chr1_4:3287157-3287176 None:intergenic 30.0%
! AGCATGCACATCATATTTTA+TGG - chr1_4:3287379-3287398 Msa0144010:intron 30.0%
CTTAAATACACAGTTCCTTA+CGG - chr1_4:3287416-3287435 Msa0144010:intron 30.0%
AAGAATGAAAGAGAAACCAT+GGG + chr1_4:3287555-3287574 None:intergenic 30.0%
AAAGAATGAAAGAGAAACCA+TGG + chr1_4:3287556-3287575 None:intergenic 30.0%
ACGACCATTAAATTAACAGT+TGG + chr1_4:3287672-3287691 None:intergenic 30.0%
! AATTCAAAACGGTTTGTTCA+TGG + chr1_4:3287702-3287721 None:intergenic 30.0%
!!! CTCAGTTGTGTTTTTTTGTA+TGG + chr1_4:3287975-3287994 None:intergenic 30.0%
!! AAAATGTCGATTTAGGTTTG+GGG - chr1_4:3288028-3288047 Msa0144010:intron 30.0%
CTGAATCATAAACTCTTGTT+CGG - chr1_4:3288077-3288096 Msa0144010:intron 30.0%
GACAATATTGTTTGTGGTTT+AGG + chr1_4:3288113-3288132 None:intergenic 30.0%
ATTAAATGAAAAGTAGGCCT+GGG + chr1_4:3288194-3288213 None:intergenic 30.0%
TTGTTTATGATTGAGACCAA+AGG - chr1_4:3288369-3288388 Msa0144010:intron 30.0%
TGTTTATGATTGAGACCAAA+GGG - chr1_4:3288370-3288389 Msa0144010:intron 30.0%
ATCAATCAACTTTCCATTGA+CGG + chr1_4:3288415-3288434 None:intergenic 30.0%
TGTCTTTCAATCGATTAAGA+AGG - chr1_4:3288460-3288479 Msa0144010:intron 30.0%
GTCAAAAAAAAACAGGTTTG+AGG + chr1_4:3288808-3288827 None:intergenic 30.0%
CTCTCGTATTTCTTCATTTA+TGG + chr1_4:3288952-3288971 None:intergenic 30.0%
TATCTGCAATCAGTAGTTAA+TGG - chr1_4:3288980-3288999 Msa0144010:intron 30.0%
CACGTTTCTTAGTTAAAAAG+AGG + chr1_4:3289246-3289265 None:intergenic 30.0%
GTTGCCATAATGAAGAAATA+TGG + chr1_4:3289382-3289401 None:intergenic 30.0%
TAACTGCCGAATTATAAAAC+CGG + chr1_4:3289623-3289642 None:intergenic 30.0%
! TATCACTAAAATTTGGTGGA+AGG - chr1_4:3289783-3289802 Msa0144010:intron 30.0%
TTAATCACCTTTGGTTGAAA+AGG + chr1_4:3289932-3289951 None:intergenic 30.0%
GATCATATCATATAGTCCAT+AGG - chr1_4:3290117-3290136 Msa0144010:intron 30.0%
ATGAATTTCATGAAGCACAA+AGG + chr1_4:3290145-3290164 None:intergenic 30.0%
TTTGTGCTTCATGAAATTCA+TGG - chr1_4:3290144-3290163 Msa0144010:intron 30.0%
TTCTTTGTAGCAAATATTGG+GGG + chr1_4:3290235-3290254 None:intergenic 30.0%
TGAAAATATGTCTCTCCATA+TGG + chr1_4:3290343-3290362 None:intergenic 30.0%
TAGAACTCTCAAATAGAGTT+TGG + chr1_4:3290441-3290460 None:intergenic 30.0%
GTCTACTTGGAGAAAAATAA+TGG + chr1_4:3290513-3290532 None:intergenic 30.0%
GTATGTATTCTATGGAAGTT+TGG + chr1_4:3290556-3290575 None:intergenic 30.0%
TGTTATCGGTATGTATTCTA+TGG + chr1_4:3290564-3290583 None:intergenic 30.0%
TCACAGTATTACAATACTGA+AGG - chr1_4:3290617-3290636 Msa0144010:intron 30.0%
AGTCCATATCTTAATTCTCT+TGG - chr1_4:3284802-3284821 Msa0144010:intron 30.0%
GTCCATATCTTAATTCTCTT+GGG - chr1_4:3284803-3284822 Msa0144010:intron 30.0%
!! AATGGACTAAATATCCCATT+AGG + chr1_4:3290819-3290838 None:intergenic 30.0%
AAAGATATCAACGAGAACAA+CGG + chr1_4:3290927-3290946 None:intergenic 30.0%
! TTGTTCTCGTTGATATCTTT+TGG - chr1_4:3290927-3290946 Msa0144010:intron 30.0%
!! GGTGATTTCGAGTTTAATTA+AGG - chr1_4:3290948-3290967 Msa0144010:intron 30.0%
TGGAAAAATAGTCTTCTTTG+GGG + chr1_4:3291046-3291065 None:intergenic 30.0%
GTTGGAAAAATAGTCTTCTT+TGG + chr1_4:3291048-3291067 None:intergenic 30.0%
GCCTTATACACATTTGATAT+TGG - chr1_4:3285156-3285175 Msa0144010:CDS 30.0%
!! GATCTTATTGGTGGTTATTT+TGG - chr1_4:3291098-3291117 Msa0144010:CDS 30.0%
!! CAATTTCATAGAGAGTATCA+AGG - chr1_4:3291169-3291188 Msa0144010:CDS 30.0%
TTATTTAGACACTATAGTCG+AGG - chr1_4:3291350-3291369 Msa0144010:intron 30.0%
ACTGATGAAATGAAACTTGT+TGG - chr1_4:3291918-3291937 Msa0144010:intron 30.0%
ATATATACAATTTAGGGGCT+AGG - chr1_4:3291950-3291969 Msa0144010:CDS 30.0%
TAATTTCCCATCTGCAATAA+AGG - chr1_4:3292026-3292045 Msa0144010:CDS 30.0%
AACTATCCTTTATTGCAGAT+GGG + chr1_4:3292035-3292054 None:intergenic 30.0%
TAACTATCCTTTATTGCAGA+TGG + chr1_4:3292036-3292055 None:intergenic 30.0%
TCTGCAATAAAGGATAGTTA+TGG - chr1_4:3292036-3292055 Msa0144010:CDS 30.0%
!!! TTTTGAAAAAGGGAGTACTT+AGG + chr1_4:3292180-3292199 None:intergenic 30.0%
GGAGCAACTATAAACATAAA+TGG - chr1_4:3292510-3292529 Msa0144010:five_prime_UTR 30.0%
AATGGTACAAAAATTGTTGC+GGG - chr1_4:3292528-3292547 Msa0144010:five_prime_UTR 30.0%
GACCCAAGAGAATTAAGATA+TGG + chr1_4:3284808-3284827 None:intergenic 35.0%
! CTTGGGTCAAATTTTACACA+TGG - chr1_4:3284820-3284839 Msa0144010:intron 35.0%
!! AATGGACTGAACATTCCATT+AGG + chr1_4:3284898-3284917 None:intergenic 35.0%
TACTGAATCTGAAGGGAAAA+TGG + chr1_4:3284916-3284935 None:intergenic 35.0%
! TTCAAAATTTTCTTGCCAGG+AGG - chr1_4:3285090-3285109 Msa0144010:CDS 35.0%
! GATCTTACTGCTGGATTTTT+CGG - chr1_4:3285186-3285205 Msa0144010:CDS 35.0%
TATTCAAAGCTGAACCAAAC+GGG + chr1_4:3285310-3285329 None:intergenic 35.0%
AAACCTATACACGTTGTTCA+AGG - chr1_4:3285580-3285599 Msa0144010:intron 35.0%
! TTCTAGAAAAGCTAGAAGCT+AGG - chr1_4:3285611-3285630 Msa0144010:intron 35.0%
!! TGAACCAAACACGTTGTTTT+TGG - chr1_4:3285688-3285707 Msa0144010:intron 35.0%
!! GCACTGTAGAGAATTGATTT+TGG - chr1_4:3285726-3285745 Msa0144010:intron 35.0%
ATATATACAAATTAGGGGCC+AGG - chr1_4:3285920-3285939 Msa0144010:intron 35.0%
! TCATTTTGGATACACAACAC+TGG - chr1_4:3285943-3285962 Msa0144010:intron 35.0%
! ATTAAAGGCACACATCCAAT+TGG + chr1_4:3285970-3285989 None:intergenic 35.0%
!! TGGATGTGTGCCTTTAATTT+TGG - chr1_4:3285972-3285991 Msa0144010:intron 35.0%
GTTAGGGTATATTTGGATTG+CGG - chr1_4:3286216-3286235 Msa0144010:intron 35.0%
TATAACATTCGTGCTAGATG+TGG - chr1_4:3286365-3286384 Msa0144010:CDS 35.0%
TTGTAACATGCCCTATTTAG+TGG + chr1_4:3286545-3286564 None:intergenic 35.0%
!!! TGGTTTTGTAGCAACCTTTT+TGG - chr1_4:3286661-3286680 Msa0144010:intron 35.0%
TCTAGAAGTTGGCAAATATG+CGG + chr1_4:3286744-3286763 None:intergenic 35.0%
!! GTAAACATAGCTCTAGAAGT+TGG + chr1_4:3286755-3286774 None:intergenic 35.0%
!!! CTTTAGTTTTTACTTGGCCT+TGG - chr1_4:3286792-3286811 Msa0144010:CDS 35.0%
CATTGTTCTTCAAACCACTT+TGG + chr1_4:3286832-3286851 None:intergenic 35.0%
!!! GAACAATGACCTCTAGTTTT+TGG - chr1_4:3286844-3286863 Msa0144010:CDS 35.0%
!! CTCTGAAAGGTTTTTACAGA+AGG - chr1_4:3286992-3287011 Msa0144010:CDS 35.0%
! GAAAGGTTTTTACAGAAGGA+AGG - chr1_4:3286996-3287015 Msa0144010:intron 35.0%
ATGAGATTCAAAGAGTAGCT+AGG - chr1_4:3287296-3287315 Msa0144010:intron 35.0%
TGAGATTCAAAGAGTAGCTA+GGG - chr1_4:3287297-3287316 Msa0144010:intron 35.0%
! GCAATGTCAATTTTATCCCA+TGG - chr1_4:3287536-3287555 Msa0144010:intron 35.0%
! TCCAATTTTCCTGAACCATT+AGG - chr1_4:3288131-3288150 Msa0144010:intron 35.0%
TCCTAATGGTTCAGGAAAAT+TGG + chr1_4:3288135-3288154 None:intergenic 35.0%
! ATTTTCCTGAACCATTAGGA+TGG - chr1_4:3288135-3288154 Msa0144010:intron 35.0%
CATTAAATGAAAAGTAGGCC+TGG + chr1_4:3288195-3288214 None:intergenic 35.0%
TGAACGATTTCAAAGTCAAC+AGG - chr1_4:3288213-3288232 Msa0144010:intron 35.0%
!! ACCAAAGGGAGTATTAAAGA+TGG - chr1_4:3288384-3288403 Msa0144010:intron 35.0%
TCCATCTTTAATACTCCCTT+TGG + chr1_4:3288388-3288407 None:intergenic 35.0%
GAAGGACTTTCACAAGAATT+TGG - chr1_4:3288478-3288497 Msa0144010:intron 35.0%
CTAAACTGTGAGATACACAA+TGG + chr1_4:3288586-3288605 None:intergenic 35.0%
! AAAGACGTTTTTACCCCTTT+CGG - chr1_4:3288674-3288693 Msa0144010:intron 35.0%
TAACTGCCGAATTATGAAAC+CGG - chr1_4:3288701-3288720 Msa0144010:intron 35.0%
TTAACTACCGAGGAAAACTT+CGG - chr1_4:3288730-3288749 Msa0144010:intron 35.0%
CTGAGGAAATCTGAAAACTT+CGG - chr1_4:3288763-3288782 Msa0144010:intron 35.0%
CCGAGGAAAATTGAAAACTT+CGG + chr1_4:3289561-3289580 None:intergenic 35.0%
! CCGAAGTTTTCAATTTTCCT+CGG - chr1_4:3289558-3289577 Msa0144010:intron 35.0%
TTAACTACCGAGGAAAACTT+CGG + chr1_4:3288730-3288749 None:intergenic 35.0%
! AAAAGACGTTTTTACCCCTT+CGG + chr1_4:3288673-3288692 None:intergenic 35.0%
! TGTTTGACCTTTTCAACCAA+AGG - chr1_4:3289922-3289941 Msa0144010:intron 35.0%
TGGCAAAATTTGAGCTTCTT+AGG - chr1_4:3290164-3290183 Msa0144010:intron 35.0%
! TTTCCTGCCATATTTAGCTT+TGG - chr1_4:3290262-3290281 Msa0144010:intron 35.0%
! TGAAGCACCAAAGCTAAATA+TGG + chr1_4:3290272-3290291 None:intergenic 35.0%
!! GATGTGTTGAGGTTTGTTAT+CGG + chr1_4:3290578-3290597 None:intergenic 35.0%
AAGCTATATGTGATGTGTTG+AGG + chr1_4:3290589-3290608 None:intergenic 35.0%
GACCCAAGAGAATTAAGATA+TGG + chr1_4:3284808-3284827 None:intergenic 35.0%
ATCAAATGTGTATAAGGCGT+TGG + chr1_4:3291066-3291085 None:intergenic 35.0%
GGTCAAAATGATCTTATTGG+TGG - chr1_4:3291089-3291108 Msa0144010:CDS 35.0%
CATAAGAACGATGATGATTG+TGG + chr1_4:3291531-3291550 None:intergenic 35.0%
CGTTCTTATGAGTAAGATTG+TGG - chr1_4:3291541-3291560 Msa0144010:intron 35.0%
TCGTTAACCACTCATTAAAG+TGG - chr1_4:3291799-3291818 Msa0144010:intron 35.0%
CGTTAACCACTCATTAAAGT+GGG - chr1_4:3291800-3291819 Msa0144010:intron 35.0%
! TCATTTTGGATACACAACAC+AGG - chr1_4:3285943-3285962 Msa0144010:intron 35.0%
! CATTTTGGATACACAACACA+GGG - chr1_4:3291974-3291993 Msa0144010:CDS 35.0%
TGGAAGCTTGATTAACATGT+AGG - chr1_4:3292423-3292442 Msa0144010:five_prime_UTR 35.0%
! GGAAAGTACAACATTCATGT+TGG - chr1_4:3292483-3292502 Msa0144010:five_prime_UTR 35.0%
TACAACATTCATGTTGGATG+TGG - chr1_4:3292489-3292508 Msa0144010:five_prime_UTR 35.0%
ACCCATCTACTAGAATCATT+TGG - chr1_4:3292562-3292581 Msa0144010:five_prime_UTR 35.0%
CCCAAATGATTCTAGTAGAT+GGG + chr1_4:3292566-3292585 None:intergenic 35.0%
CCCATCTACTAGAATCATTT+GGG - chr1_4:3292563-3292582 Msa0144010:five_prime_UTR 35.0%
TCCCAAATGATTCTAGTAGA+TGG + chr1_4:3292567-3292586 None:intergenic 35.0%
TCTACTAGAATCATTTGGGA+TGG - chr1_4:3292567-3292586 Msa0144010:five_prime_UTR 35.0%
GTCTTTGATCAAATCTCTAC+TGG - chr1_4:3286497-3286516 Msa0144010:intron 35.0%
! TCCTCCTATTTCTCTAGATA+TGG - chr1_4:3292656-3292675 Msa0144010:five_prime_UTR 35.0%
CATGCCATATCTAGAGAAAT+AGG + chr1_4:3292663-3292682 None:intergenic 35.0%
AATGTTGCAAATACACCTCC+TGG + chr1_4:3285108-3285127 None:intergenic 40.0%
GGTCAAAATGATCTTACTGC+TGG - chr1_4:3285177-3285196 Msa0144010:CDS 40.0%
AACGGGCACATAGCAAAAAT+GGG + chr1_4:3285293-3285312 None:intergenic 40.0%
AAACGGGCACATAGCAAAAA+TGG + chr1_4:3285294-3285313 None:intergenic 40.0%
!! ATTTTTGCTATGTGCCCGTT+TGG - chr1_4:3285293-3285312 Msa0144010:intron 40.0%
TCTCCTTGAACAACGTGTAT+AGG + chr1_4:3285586-3285605 None:intergenic 40.0%
AGCTAGGATTTGTAGCTTCA+TGG - chr1_4:3285627-3285646 Msa0144010:intron 40.0%
! GCTTCATGGAGAATTGCTTT+TGG - chr1_4:3285641-3285660 Msa0144010:intron 40.0%
!! TCATGGAGAATTGCTTTTGG+AGG - chr1_4:3285644-3285663 Msa0144010:intron 40.0%
CTAGCCAAAAACAACGTGTT+TGG + chr1_4:3285695-3285714 None:intergenic 40.0%
GTTGTGTATCCAAAATGACC+TGG + chr1_4:3285941-3285960 None:intergenic 40.0%
ATACACAACACTGGACCAAT+TGG - chr1_4:3285952-3285971 Msa0144010:intron 40.0%
TGGCTATCCTTTATAGCAGA+TGG + chr1_4:3286006-3286025 None:intergenic 40.0%
TCTGCTATAAAGGATAGCCA+AGG - chr1_4:3286006-3286025 Msa0144010:intron 40.0%
TGTATTGCTTTGCACAACCT+TGG + chr1_4:3286026-3286045 None:intergenic 40.0%
ACATATGTGATTGCAGCTAG+TGG + chr1_4:3286114-3286133 None:intergenic 40.0%
ATCCTCCCATTCCACTAAAT+AGG - chr1_4:3286531-3286550 Msa0144010:intron 40.0%
TCCTCCCATTCCACTAAATA+GGG - chr1_4:3286532-3286551 Msa0144010:intron 40.0%
CATGCCCTATTTAGTGGAAT+GGG + chr1_4:3286539-3286558 None:intergenic 40.0%
ACATGCCCTATTTAGTGGAA+TGG + chr1_4:3286540-3286559 None:intergenic 40.0%
TTGGAACAATCATGGAAGGT+AGG - chr1_4:3286717-3286736 Msa0144010:intron 40.0%
CTAGAAGTTGGCAAATATGC+GGG + chr1_4:3286743-3286762 None:intergenic 40.0%
GAAGGTGAGACCAAAATGAA+GGG - chr1_4:3287014-3287033 Msa0144010:intron 40.0%
!! TCCATTCGATTTGGCTAACA+CGG + chr1_4:3287264-3287283 None:intergenic 40.0%
!! CTTTGAAGCTCCATTCGATT+TGG + chr1_4:3287273-3287292 None:intergenic 40.0%
AACGGTTCGACAAAATAGTC+TGG + chr1_4:3287728-3287747 None:intergenic 40.0%
AACACAACTGAGTTCGCAAA+AGG - chr1_4:3287983-3288002 Msa0144010:intron 40.0%
ATCAACTTTCCATTGACGGT+CGG + chr1_4:3288411-3288430 None:intergenic 40.0%
! TGCTGTTGACACATTAGCTT+TGG - chr1_4:3288635-3288654 Msa0144010:intron 40.0%
!! TTGACACATTAGCTTTGGCT+AGG - chr1_4:3288640-3288659 Msa0144010:intron 40.0%
! TTAACTGCCGAAGTTTTCCT+CGG + chr1_4:3288740-3288759 None:intergenic 40.0%
! AAACAGGTTTGAGGTTTCCT+CGG + chr1_4:3289525-3289544 None:intergenic 40.0%
! AAACAGGTTTGAGGTTTCCT+CGG - chr1_4:3289525-3289544 Msa0144010:intron 40.0%
! TTTACTGCCGAAGTTTTCCT+CGG - chr1_4:3289584-3289603 Msa0144010:intron 40.0%
!! CTGCAGCCGGTTTTATAATT+CGG - chr1_4:3289614-3289633 Msa0144010:intron 40.0%
!! TTGACACATTAGCTTTGGCT+AGG + chr1_4:3288640-3288659 None:intergenic 40.0%
! TGCTGTTGACACATTAGCTT+TGG + chr1_4:3288635-3288654 None:intergenic 40.0%
ATGAAGCACAAAGGAACCTA+TGG + chr1_4:3290136-3290155 None:intergenic 40.0%
AGCACAATCAAAGACACAAG+TGG + chr1_4:3290196-3290215 None:intergenic 40.0%
TATGTCTCTCCATATGGAGA+AGG + chr1_4:3290337-3290356 None:intergenic 40.0%
TCAACTGGAAGATACTCTGA+TGG - chr1_4:3290367-3290386 Msa0144010:intron 40.0%
AAGTACTTGAGAGGTCTACT+TGG + chr1_4:3290526-3290545 None:intergenic 40.0%
GGATCTTCTAAGTACTTGAG+AGG + chr1_4:3290535-3290554 None:intergenic 40.0%
GTAATTTCAGCACAGAGCTT+TGG - chr1_4:3290687-3290706 Msa0144010:CDS 40.0%
! TGGGTATTGTGAGTTGTCAT+TGG + chr1_4:3291492-3291511 None:intergenic 40.0%
! ATTTAGGGGCTAGGTCATTT+TGG - chr1_4:3291959-3291978 Msa0144010:CDS 40.0%
GGGAAATTAGCCAAAATCGT+AGG + chr1_4:3292015-3292034 None:intergenic 40.0%
GCCATATCTAGAGAAATAGG+AGG + chr1_4:3292660-3292679 None:intergenic 40.0%
! AATTAGGGGCCAGGTCATTT+TGG - chr1_4:3285929-3285948 Msa0144010:intron 45.0%
ATCCACACGAAGTTGAGCTA+GGG + chr1_4:3286088-3286107 None:intergenic 45.0%
AGGATTTGAGCTACCACATG+TGG - chr1_4:3286313-3286332 Msa0144010:CDS 45.0%
GGATGGTACACATTACACAG+AGG - chr1_4:3286460-3286479 Msa0144010:CDS 45.0%
GCGTTACTGTTGAACCAAAG+TGG - chr1_4:3286815-3286834 Msa0144010:CDS 45.0%
GGAAGGTGAGACCAAAATGA+AGG - chr1_4:3287013-3287032 Msa0144010:intron 45.0%
ACCGTGTTAGCCAAATCGAA+TGG - chr1_4:3287260-3287279 Msa0144010:intron 45.0%
CCTGAACCATTAGGATGGTT+CGG - chr1_4:3288140-3288159 Msa0144010:intron 45.0%
!! ACCATTAGGATGGTTCGGTT+TGG - chr1_4:3288145-3288164 Msa0144010:intron 45.0%
ACCAAACCGAACCATCCTAA+TGG + chr1_4:3288149-3288168 None:intergenic 45.0%
AACAGGCGTATTACTCTCTC+TGG - chr1_4:3288230-3288249 Msa0144010:intron 45.0%
TCGGCAGTTAACTACCGAAA+GGG + chr1_4:3288691-3288710 None:intergenic 45.0%
TTCGGCAGTTAACTACCGAA+AGG + chr1_4:3289632-3289651 None:intergenic 45.0%
! CTGCAGCCGGTTTCATAATT+CGG + chr1_4:3288710-3288729 None:intergenic 45.0%
ATTCGGCAGTTAACTACCGA+AGG - chr1_4:3289631-3289650 Msa0144010:intron 45.0%
TTCGGCAGTTAACTACCGAA+GGG - chr1_4:3289632-3289651 Msa0144010:intron 45.0%
TGTCATGCTCTAGCCAAATG+TGG - chr1_4:3289807-3289826 Msa0144010:intron 45.0%
TGTATCAAGCGTGCCACATT+TGG + chr1_4:3289823-3289842 None:intergenic 45.0%
GCACCAAAGCTAAATATGGC+AGG + chr1_4:3290268-3290287 None:intergenic 45.0%
AAACGTTGACACTGGTGGTT+TGG - chr1_4:3290291-3290310 Msa0144010:intron 45.0%
CTTGGGTCTAACTTCACACA+TGG - chr1_4:3290741-3290760 Msa0144010:CDS 45.0%
TGACAACTCACAATACCCAC+TGG - chr1_4:3291493-3291512 Msa0144010:intron 45.0%
GACAACTCACAATACCCACT+GGG - chr1_4:3291494-3291513 Msa0144010:intron 45.0%
TGGATTTCTACACTCCCAGT+GGG + chr1_4:3291511-3291530 None:intergenic 45.0%
CTACTGCCCACTTTAATGAG+TGG + chr1_4:3291809-3291828 None:intergenic 45.0%
! TGGTTGCACTCCTACGATTT+TGG - chr1_4:3292002-3292021 Msa0144010:CDS 45.0%
ATCGCTACGAAGTTGAGCTA+GGG + chr1_4:3292118-3292137 None:intergenic 45.0%
ACATATGCGATTGCAGCAAG+AGG + chr1_4:3292144-3292163 None:intergenic 45.0%
GTTAGCTGTCTCTGTGAAGT+GGG + chr1_4:3292595-3292614 None:intergenic 45.0%
TGTTAGCTGTCTCTGTGAAG+TGG + chr1_4:3292596-3292615 None:intergenic 45.0%
!! TTTATTAATATATATAACAA+GGG + chr1_4:3285877-3285896 None:intergenic 5.0%
!!! TTTTATTAATATATATAACA+AGG + chr1_4:3285878-3285897 None:intergenic 5.0%
!! TAAAGAATTAAATTTAATTA+AGG + chr1_4:3289455-3289474 None:intergenic 5.0%
!!! TTAATTCTTTAATTATTTTA+TGG + chr1_4:3289446-3289465 None:intergenic 5.0%
!! TAAAGAATTAAATTTAATTA+AGG - chr1_4:3289455-3289474 Msa0144010:intron 5.0%
GGTGCAAACTTTGCAACAGC+AGG - chr1_4:3284841-3284860 Msa0144010:intron 50.0%
GATCCACACGAAGTTGAGCT+AGG + chr1_4:3286089-3286108 None:intergenic 50.0%
CTACCACATGTGGCATGTTG+TGG - chr1_4:3286323-3286342 Msa0144010:CDS 50.0%
TAGCCACAACATGCCACATG+TGG + chr1_4:3286329-3286348 None:intergenic 50.0%
CATGTGGCATGTTGTGGCTA+TGG - chr1_4:3286329-3286348 Msa0144010:CDS 50.0%
GCCCTATTTAGTGGAATGGG+AGG + chr1_4:3286536-3286555 None:intergenic 50.0%
TGGTTCAACAGTAACGCCCA+AGG + chr1_4:3286812-3286831 None:intergenic 50.0%
CACAGTTCCTTACGGTGTAC+CGG - chr1_4:3287424-3287443 Msa0144010:intron 50.0%
ACAGTTCCTTACGGTGTACC+GGG - chr1_4:3287425-3287444 Msa0144010:intron 50.0%
TAAGAACCCGGTACACCGTA+AGG + chr1_4:3287434-3287453 None:intergenic 50.0%
CCGAACCATCCTAATGGTTC+AGG + chr1_4:3288143-3288162 None:intergenic 50.0%
TCCAAAAATTGGACCAGCCC+AGG - chr1_4:3288174-3288193 Msa0144010:intron 50.0%
AATGAAAAGTAGGCCTGGGC+TGG + chr1_4:3288190-3288209 None:intergenic 50.0%
AAAGATGGACCGACCGTCAA+TGG - chr1_4:3288399-3288418 Msa0144010:intron 50.0%
CGGCAGTTAACTACCGAAAG+GGG + chr1_4:3288690-3288709 None:intergenic 50.0%
ACTTCGGCAGTTAACTGCTG+AGG - chr1_4:3288746-3288765 Msa0144010:intron 50.0%
ACTTCGGCAATTAACTGCCG+AGG - chr1_4:3288779-3288798 Msa0144010:intron 50.0%
ACTTCGGCAATTAACTGCCG+AGG + chr1_4:3288779-3288798 None:intergenic 50.0%
ACTTCGGCAGTAAACTACCG+AGG + chr1_4:3289578-3289597 None:intergenic 50.0%
TCGGCAGTTAACTACCGAAG+GGG - chr1_4:3289633-3289652 Msa0144010:intron 50.0%
GGCACGCTTGATACACATCA+TGG - chr1_4:3289828-3289847 Msa0144010:intron 50.0%
GGTGCTTCAAACGTTGACAC+TGG - chr1_4:3290283-3290302 Msa0144010:intron 50.0%
GCTTCAAACGTTGACACTGG+TGG - chr1_4:3290286-3290305 Msa0144010:intron 50.0%
TGGAGAAGGTGGTGCTTGAA+AGG + chr1_4:3290323-3290342 None:intergenic 50.0%
CAAGCACCACCTTCTCCATA+TGG - chr1_4:3290325-3290344 Msa0144010:intron 50.0%
GTCTCTCCATATGGAGAAGG+TGG + chr1_4:3290334-3290353 None:intergenic 50.0%
CATGGTGCAAACTTCGCAAC+AGG - chr1_4:3290759-3290778 Msa0144010:CDS 50.0%
GTGGATTTCTACACTCCCAG+TGG + chr1_4:3291512-3291531 None:intergenic 50.0%
ATACACAACACAGGGCCAAG+TGG - chr1_4:3291982-3292001 Msa0144010:CDS 50.0%
! ATCGTAGGAGTGCAACCACT+TGG + chr1_4:3292000-3292019 None:intergenic 50.0%
GATCGCTACGAAGTTGAGCT+AGG + chr1_4:3292119-3292138 None:intergenic 50.0%
AGGATTTGAGCTTCCACACG+TGG - chr1_4:3292443-3292462 Msa0144010:five_prime_UTR 50.0%
AGCCCTAGCTCAACTTCGTG+TGG - chr1_4:3286083-3286102 Msa0144010:CDS 55.0%
GTGGCATGTTGTGGCTATGG+AGG - chr1_4:3286332-3286351 Msa0144010:CDS 55.0%
!!! GCCTGGGCTGGTCCAATTTT+TGG + chr1_4:3288178-3288197 None:intergenic 55.0%
CCTCGGTAGTTAACTGCAGC+CGG + chr1_4:3289601-3289620 None:intergenic 55.0%
CCTCGGTAGTTAACTGCAGC+CGG - chr1_4:3289601-3289620 Msa0144010:intron 55.0%
GGTGCAAACTTCGCAACAGG+AGG - chr1_4:3290762-3290781 Msa0144010:CDS 55.0%
CTTCCACACGTGGCATGTTG+TGG - chr1_4:3292453-3292472 Msa0144010:five_prime_UTR 55.0%
TAGCCACAACATGCCACGTG+TGG + chr1_4:3292459-3292478 None:intergenic 55.0%
CACGTGGCATGTTGTGGCTA+TGG - chr1_4:3292459-3292478 Msa0144010:five_prime_UTR 55.0%
GTGGCATGTTGTGGCTATGG+AGG - chr1_4:3286332-3286351 Msa0144010:CDS 55.0%
CCGGCTGCAGTTAACTACCG+AGG - chr1_4:3288720-3288739 Msa0144010:intron 60.0%
CCGGCTGCAGTTAACTACCG+AGG + chr1_4:3288720-3288739 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3284507 3292692 3284507 ID=Msa0144010;Name=Msa0144010
chr1_4 mRNA 3284507 3292692 3284507 ID=Msa0144010-mRNA-1;Parent=Msa0144010;Name=Msa0144010-mRNA-1;_AED=0.14;_eAED=0.14;_QI=397|0.5|0.33|1|0.37|0.22|9|0|568
chr1_4 exon 3284507 3284746 3284507 ID=Msa0144010-mRNA-1:exon:1427;Parent=Msa0144010-mRNA-1
chr1_4 exon 3285038 3285250 3285038 ID=Msa0144010-mRNA-1:exon:1426;Parent=Msa0144010-mRNA-1
chr1_4 exon 3286009 3286178 3286009 ID=Msa0144010-mRNA-1:exon:1425;Parent=Msa0144010-mRNA-1
chr1_4 exon 3286293 3286502 3286293 ID=Msa0144010-mRNA-1:exon:1424;Parent=Msa0144010-mRNA-1
chr1_4 exon 3286787 3287013 3286787 ID=Msa0144010-mRNA-1:exon:1423;Parent=Msa0144010-mRNA-1
chr1_4 exon 3290632 3290817 3290632 ID=Msa0144010-mRNA-1:exon:1422;Parent=Msa0144010-mRNA-1
chr1_4 exon 3291048 3291280 3291048 ID=Msa0144010-mRNA-1:exon:1421;Parent=Msa0144010-mRNA-1
chr1_4 exon 3291948 3292090 3291948 ID=Msa0144010-mRNA-1:exon:1420;Parent=Msa0144010-mRNA-1
chr1_4 exon 3292214 3292692 3292214 ID=Msa0144010-mRNA-1:exon:1419;Parent=Msa0144010-mRNA-1
chr1_4 five_prime_UTR 3292296 3292692 3292296 ID=Msa0144010-mRNA-1:five_prime_utr;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3292214 3292295 3292214 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3291948 3292090 3291948 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3291048 3291280 3291048 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3290632 3290817 3290632 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3286787 3287013 3286787 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3286293 3286502 3286293 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3286009 3286178 3286009 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3285038 3285250 3285038 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
chr1_4 CDS 3284507 3284746 3284507 ID=Msa0144010-mRNA-1:cds;Parent=Msa0144010-mRNA-1
Gene Sequence

>Msa0144010

ATGTTCAGTCCATTTTCCCTTCAGATTCAGTACATTCAATTCAAAGATTTCATACCCAAAACAAAGTTTATTAGGGATCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATAGGTCAAAATGATCTTACTGCTGGATTTTTCGGTAATAAGACTATACAACAAGTCAACGCTACTGTGCCCGATATAAATATATACAAATTAGGGGCCAGGTCATTTTGGATACACAACACTGGACCAATTGGATGTGTGCCTTTAATTTTGGCCAATTTTCCATCTGCTATAAAGGATAGCCAAGGTTGTGCAAAGCAATACAATGAAGTATCTCAATATTTTAATTTAAAGTTGAAGGAAGCCCTAGCTCAACTTCGTGTGGATCTTCCACTAGCTGCAATCACATATGTTGATATCTACTCTCCTAAATGTGGAGAAATCATAAACATAAATGGTACAAACATTGTTGTTGGTTCATGTAAAAAACCATCTACTAGAATAATATGGGATGGTACACATTACACAGAGGCAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGAAGCTTTTACAAATCCTCCCATTCCACTAAATAGGGCATGTTACAAAAAGCACATGCCACTTGTGTCTTTGATTGTGCTTATTTTATGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCCATATTTAGCTTTGGTGCTTCAAACGTTGACACTGGTGGTTTGGCTGCTGCCTTTCAAGCACCACCTTCTCCATATGGAGAGACATATTTTCATAGATCAACTGGAAGATACTCTGATGGTCGAATCATTATTGATTTCATAGCACAGAGCTTTGGACTTCCCTATCTAAGTCCATATCTTAATTCTCTTGGGTCTAACTTCACACATGGTGCAAACTTCGCAACAGGAGGATCAACAATCAATATTCCTAATAGTATTATACCTAATGGGATATTTAGTCCATTTTCTCTTCAAATTCAGTACATTCAATTCAAAGATTTCATATCCAAAACAAATCTCATTAGAGATAAAGGAGGTGTATTTGCAACGTTGATCCCCAAAGAAGACTATTTTTCCAACGCCTTATACACATTTGATATTGGTCAAAATGATCTTATTGGTGGTTATTTTGGTAATGCGACTATAAAACAAGTCAATGCTACTGTACCCGATATAGTAAACAATTTCATAGAGAGTATCAAGAATATATACAATTTAGGGGCTAGGTCATTTTGGATACACAACACAGGGCCAAGTGGTTGCACTCCTACGATTTTGGCTAATTTCCCATCTGCAATAAAGGATAGTTATGGTTGTGCAAAGCAACACAATGAAGTATCTCAGTATTTTAATTTAAAGTTGAAGGAAGCCCTAGCTCAACTTCGTAGCGATCTTCCTCTTGCTGCAATCGCATATCTTCCACACGTGGCATGTTGTGGCTATGGAGGAAAGTACAACATTCATGTTGGATGTGGAGCAACTATAAACATAAATGGTACAAAAATTGTTGCGGGTTCATGTAAAAACCCATCTACTAGAATCATTTGGGATGGTTCCCACTTCACAGAGACAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGGAGCTTTCAATGATCCTCCTATTTCTCTAGATATGGCATGTTATAGAAAG

Protein sequence

>Msa0144010

MFSPFSLQIQYIQFKDFIPKTKFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNATVPDINIYKLGARSFWIHNTGPIGCVPLILANFPSAIKDSQGCAKQYNEVSQYFNLKLKEALAQLRVDLPLAAITYVDIYSPKCGEIININGTNIVVGSCKKPSTRIIWDGTHYTEAANKIVFDQISTEAFTNPPIPLNRACYKKHMPLVSLIVLILCSTPPIFATKNCDFPAIFSFGASNVDTGGLAAAFQAPPSPYGETYFHRSTGRYSDGRIIIDFIAQSFGLPYLSPYLNSLGSNFTHGANFATGGSTINIPNSIIPNGIFSPFSLQIQYIQFKDFISKTNLIRDKGGVFATLIPKEDYFSNALYTFDIGQNDLIGGYFGNATIKQVNATVPDIVNNFIESIKNIYNLGARSFWIHNTGPSGCTPTILANFPSAIKDSYGCAKQHNEVSQYFNLKLKEALAQLRSDLPLAAIAYLPHVACCGYGGKYNIHVGCGATININGTKIVAGSCKNPSTRIIWDGSHFTETANKIVFDQISTGAFNDPPISLDMACYRK