AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045740 MtrunA17_Chr7g0215351 88.312 77 9 0 28 104 105 181 1.24e-49 155
Msa1045740 MtrunA17_Chr7g0215381 88.312 77 9 0 28 104 105 181 1.51e-49 155
Msa1045740 MtrunA17_Chr7g0215431 89.610 77 8 0 28 104 105 181 1.53e-49 155
Msa1045740 MtrunA17_Chr7g0215361 88.312 77 9 0 28 104 105 181 1.56e-49 155
Msa1045740 MtrunA17_Chr7g0215421 88.312 77 9 0 28 104 105 181 2.08e-49 154
Msa1045740 MtrunA17_Chr6g0457471 83.544 79 13 0 26 104 102 180 2.18e-48 152
Msa1045740 MtrunA17_Chr6g0457461 84.615 78 12 0 27 104 100 177 4.38e-48 151
Msa1045740 MtrunA17_Chr4g0072241 51.389 72 35 0 30 101 96 167 2.75e-27 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045740 AT1G67090.1 73.077 78 21 0 27 104 101 178 5.00e-41 134
Msa1045740 AT5G38410.1 70.886 79 23 0 26 104 100 178 1.86e-40 132
Msa1045740 AT5G38410.3 70.886 79 23 0 26 104 105 183 2.25e-40 132
Msa1045740 AT5G38420.1 70.886 79 23 0 26 104 100 178 2.29e-40 132
Msa1045740 AT5G38430.1 70.886 79 23 0 26 104 100 178 2.47e-40 132
Msa1045740 AT5G38430.2 70.886 79 23 0 26 104 100 178 2.47e-40 132
Msa1045740 AT5G38410.2 72.857 70 19 0 35 104 102 171 3.03e-36 121

Find 20 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATACTATGACGGACGTTAC+TGG 0.345500 7_2:-5893276 Msa1045740:CDS
TGATGCTTCTCAAGTGTTGA+AGG 0.410018 7_2:-5893221 Msa1045740:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_2:-5893250 Msa1045740:CDS
ATGATACGGACAAAGGCATC+AGG 0.443523 7_2:+5893172 None:intergenic
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_2:-5893169 Msa1045740:CDS
ACCTTTGATAACTTGCAGAA+AGG 0.486549 7_2:-5893331 Msa1045740:CDS
CTCACTAGCTGAAAAGAAGA+AGG 0.512091 7_2:-5895028 Msa1045740:intron
CTGGTGAATTGTGGTTCTCA+TGG 0.544070 7_2:+5893299 None:intergenic
CATAGTATCCTGGTGAATTG+TGG 0.547121 7_2:+5893290 None:intergenic
TCCTTTCTGCAAGTTATCAA+AGG 0.554607 7_2:+5893330 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 7_2:+5893280 None:intergenic
TTTCTGCAAGTTATCAAAGG+TGG 0.570074 7_2:+5893333 None:intergenic
CATTGTCGAATCCGATGATA+CGG 0.577226 7_2:+5893158 None:intergenic
CATGAGAACCACAATTCACC+AGG 0.588753 7_2:-5893298 Msa1045740:CDS
GCATCAGTTGCTCCAAACAA+AGG 0.598394 7_2:+5893238 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 7_2:+5893173 None:intergenic
AATTCACCAGGATACTATGA+CGG 0.657839 7_2:-5893286 Msa1045740:CDS
ACTAAAACTTAGTAAACTGG+TGG 0.666635 7_2:+5893097 None:intergenic
GAATCCGATGATACGGACAA+AGG 0.687909 7_2:+5893165 None:intergenic
ACGGACGTTACTGGACAATG+TGG 0.708236 7_2:-5893267 Msa1045740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAAAATAAATAAAAATCT+TGG + chr7_2:5893921-5893940 None:intergenic 10.0%
!!! GTAATAGTATTTTAAATATT+TGG - chr7_2:5894506-5894525 Msa1045740:intron 10.0%
!! ATTAAAAACAAAATATTTGT+AGG + chr7_2:5894539-5894558 None:intergenic 10.0%
!! ATCAAAATAAATAAAAATCT+TGG + chr7_2:5893921-5893940 None:intergenic 10.0%
!!! GTAATAGTATTTTAAATATT+TGG - chr7_2:5894506-5894525 Msa1045740:intron 10.0%
!! ATTAAAAACAAAATATTTGT+AGG + chr7_2:5894539-5894558 None:intergenic 10.0%
!!! TGATTTTAATTTTTTTCTTC+AGG - chr7_2:5893200-5893219 Msa1045740:CDS 15.0%
!! TTTGAAAAAAATCAATCATA+GGG + chr7_2:5893487-5893506 None:intergenic 15.0%
!! TCAAAATTAAAAGTTGTAAA+AGG - chr7_2:5894170-5894189 Msa1045740:intron 15.0%
!! CAAAATTAAAAGTTGTAAAA+GGG - chr7_2:5894171-5894190 Msa1045740:intron 15.0%
!! AAAATTAAAAGTTGTAAAAG+GGG - chr7_2:5894172-5894191 Msa1045740:intron 15.0%
!!! TGAAATGTGTTTTTTTAATA+GGG - chr7_2:5894209-5894228 Msa1045740:intron 15.0%
!!! TGATTTTAATTTTTTTCTTC+AGG - chr7_2:5893200-5893219 Msa1045740:CDS 15.0%
!! TTTGAAAAAAATCAATCATA+GGG + chr7_2:5893487-5893506 None:intergenic 15.0%
!! TCAAAATTAAAAGTTGTAAA+AGG - chr7_2:5894170-5894189 Msa1045740:intron 15.0%
!! CAAAATTAAAAGTTGTAAAA+GGG - chr7_2:5894171-5894190 Msa1045740:intron 15.0%
!! AAAATTAAAAGTTGTAAAAG+GGG - chr7_2:5894172-5894191 Msa1045740:intron 15.0%
!!! TGAAATGTGTTTTTTTAATA+GGG - chr7_2:5894209-5894228 Msa1045740:intron 15.0%
!! GTTTGAAAAAAATCAATCAT+AGG + chr7_2:5893488-5893507 None:intergenic 20.0%
!! AGCTATGAATATATAATTTC+AGG + chr7_2:5893516-5893535 None:intergenic 20.0%
!! ATATATTCATAGCTGAAAAA+TGG - chr7_2:5893522-5893541 Msa1045740:intron 20.0%
!! TTGAACAAAATTCAATGATT+GGG + chr7_2:5893605-5893624 None:intergenic 20.0%
!! TTTGAACAAAATTCAATGAT+TGG + chr7_2:5893606-5893625 None:intergenic 20.0%
!! CAATGGATAATCATAATTAT+TGG - chr7_2:5893676-5893695 Msa1045740:intron 20.0%
!! GATAAAATTCAAGTCTATAA+GGG + chr7_2:5893772-5893791 None:intergenic 20.0%
!! AGATAAAATTCAAGTCTATA+AGG + chr7_2:5893773-5893792 None:intergenic 20.0%
!!! TTATTTTGATGTATAACCTA+AGG - chr7_2:5893931-5893950 Msa1045740:intron 20.0%
!! AAAAGACAATAACACAAATA+AGG - chr7_2:5893954-5893973 Msa1045740:intron 20.0%
!! AAAATTGAAAGTTGCAAAAA+GGG + chr7_2:5894040-5894059 None:intergenic 20.0%
!!! CTGAAATGTGTTTTTTTAAT+AGG - chr7_2:5894208-5894227 Msa1045740:intron 20.0%
!!! GAAATGTGTTTTTTTAATAG+GGG - chr7_2:5894210-5894229 Msa1045740:intron 20.0%
!!! AAATGTGTTTTTTTAATAGG+GGG - chr7_2:5894211-5894230 Msa1045740:intron 20.0%
!! ATATAGTGATGTATGATATA+TGG - chr7_2:5894376-5894395 Msa1045740:intron 20.0%
!! TTACGAAGAAAAAAATTTCT+CGG - chr7_2:5894859-5894878 Msa1045740:intron 20.0%
!! GTTTGAAAAAAATCAATCAT+AGG + chr7_2:5893488-5893507 None:intergenic 20.0%
!! AGCTATGAATATATAATTTC+AGG + chr7_2:5893516-5893535 None:intergenic 20.0%
!! ATATATTCATAGCTGAAAAA+TGG - chr7_2:5893522-5893541 Msa1045740:intron 20.0%
!! TTGAACAAAATTCAATGATT+GGG + chr7_2:5893605-5893624 None:intergenic 20.0%
!! TTTGAACAAAATTCAATGAT+TGG + chr7_2:5893606-5893625 None:intergenic 20.0%
!! CAATGGATAATCATAATTAT+TGG - chr7_2:5893676-5893695 Msa1045740:intron 20.0%
!! GATAAAATTCAAGTCTATAA+GGG + chr7_2:5893772-5893791 None:intergenic 20.0%
!! AGATAAAATTCAAGTCTATA+AGG + chr7_2:5893773-5893792 None:intergenic 20.0%
!!! TTATTTTGATGTATAACCTA+AGG - chr7_2:5893931-5893950 Msa1045740:intron 20.0%
!! AAAAGACAATAACACAAATA+AGG - chr7_2:5893954-5893973 Msa1045740:intron 20.0%
!! AAAATTGAAAGTTGCAAAAA+GGG + chr7_2:5894040-5894059 None:intergenic 20.0%
!!! CTGAAATGTGTTTTTTTAAT+AGG - chr7_2:5894208-5894227 Msa1045740:intron 20.0%
!!! GAAATGTGTTTTTTTAATAG+GGG - chr7_2:5894210-5894229 Msa1045740:intron 20.0%
!!! AAATGTGTTTTTTTAATAGG+GGG - chr7_2:5894211-5894230 Msa1045740:intron 20.0%
!! ATATAGTGATGTATGATATA+TGG - chr7_2:5894376-5894395 Msa1045740:intron 20.0%
!! TTACGAAGAAAAAAATTTCT+CGG - chr7_2:5894859-5894878 Msa1045740:intron 20.0%
!! GTTTTACATCAAAAATCTCA+CGG - chr7_2:5893222-5893241 Msa1045740:CDS 25.0%
!!! GATGAAAAGTATAGTTTTTC+TGG + chr7_2:5893311-5893330 None:intergenic 25.0%
!! ACTATACTTTTCATCTACTT+AGG - chr7_2:5893316-5893335 Msa1045740:CDS 25.0%
! GTTTCAAAAATCAATCACAA+TGG - chr7_2:5893659-5893678 Msa1045740:intron 25.0%
!!! GGAAACTTTTTTTTAATAGG+GGG + chr7_2:5894017-5894036 None:intergenic 25.0%
!!! GGGAAACTTTTTTTTAATAG+GGG + chr7_2:5894018-5894037 None:intergenic 25.0%
!!! GGGGAAACTTTTTTTTAATA+GGG + chr7_2:5894019-5894038 None:intergenic 25.0%
! AAATTGAAAGTTGCAAAAAG+GGG + chr7_2:5894039-5894058 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+AGG + chr7_2:5894041-5894060 None:intergenic 25.0%
! ATTGCAACTAATACAAAGTT+AGG - chr7_2:5894239-5894258 Msa1045740:intron 25.0%
! TTGCAACTAATACAAAGTTA+GGG - chr7_2:5894240-5894259 Msa1045740:intron 25.0%
!!! ATTTTGAACTAGTATCGAAA+TGG - chr7_2:5894285-5894304 Msa1045740:intron 25.0%
! TCTTATACATGTTGTCAATA+AGG - chr7_2:5894313-5894332 Msa1045740:intron 25.0%
! GGTTAAAAAAACGCATATTT+CGG + chr7_2:5894726-5894745 None:intergenic 25.0%
! ATAGAACATCCAAAATATCA+AGG - chr7_2:5894887-5894906 Msa1045740:intron 25.0%
! AAGTAAGAAGAACTTAATTG+TGG + chr7_2:5894925-5894944 None:intergenic 25.0%
!! GTTTTACATCAAAAATCTCA+CGG - chr7_2:5893222-5893241 Msa1045740:CDS 25.0%
!!! GATGAAAAGTATAGTTTTTC+TGG + chr7_2:5893311-5893330 None:intergenic 25.0%
!! ACTATACTTTTCATCTACTT+AGG - chr7_2:5893316-5893335 Msa1045740:CDS 25.0%
! GTTTCAAAAATCAATCACAA+TGG - chr7_2:5893659-5893678 Msa1045740:intron 25.0%
!!! GGAAACTTTTTTTTAATAGG+GGG + chr7_2:5894017-5894036 None:intergenic 25.0%
!!! GGGAAACTTTTTTTTAATAG+GGG + chr7_2:5894018-5894037 None:intergenic 25.0%
!!! GGGGAAACTTTTTTTTAATA+GGG + chr7_2:5894019-5894038 None:intergenic 25.0%
! AAATTGAAAGTTGCAAAAAG+GGG + chr7_2:5894039-5894058 None:intergenic 25.0%
! CAAAATTGAAAGTTGCAAAA+AGG + chr7_2:5894041-5894060 None:intergenic 25.0%
! ATTGCAACTAATACAAAGTT+AGG - chr7_2:5894239-5894258 Msa1045740:intron 25.0%
! TTGCAACTAATACAAAGTTA+GGG - chr7_2:5894240-5894259 Msa1045740:intron 25.0%
!!! ATTTTGAACTAGTATCGAAA+TGG - chr7_2:5894285-5894304 Msa1045740:intron 25.0%
! TCTTATACATGTTGTCAATA+AGG - chr7_2:5894313-5894332 Msa1045740:intron 25.0%
! GGTTAAAAAAACGCATATTT+CGG + chr7_2:5894726-5894745 None:intergenic 25.0%
! ATAGAACATCCAAAATATCA+AGG - chr7_2:5894887-5894906 Msa1045740:intron 25.0%
! AAGTAAGAAGAACTTAATTG+TGG + chr7_2:5894925-5894944 None:intergenic 25.0%
AAATGCATTAATCGAGAAGA+GGG + chr7_2:5893143-5893162 None:intergenic 30.0%
GAAGAAGGTTATGTTCATAA+CGG - chr7_2:5893273-5893292 Msa1045740:CDS 30.0%
AAGAAGGTTATGTTCATAAC+GGG - chr7_2:5893274-5893293 Msa1045740:CDS 30.0%
TTGAATTGATGAGTTCATAG+TGG + chr7_2:5893351-5893370 None:intergenic 30.0%
TTCAAATTATGGTACCAAGT+TGG + chr7_2:5893409-5893428 None:intergenic 30.0%
ATCGAACAACGTTCAAATTA+TGG + chr7_2:5893420-5893439 None:intergenic 30.0%
AATCATAGGGAAATCATATC+TGG + chr7_2:5893474-5893493 None:intergenic 30.0%
ATCTAACCATTATTGTAGGA+GGG - chr7_2:5893547-5893566 Msa1045740:intron 30.0%
TCAATTCCACATCACATATT+AGG + chr7_2:5893707-5893726 None:intergenic 30.0%
TTCATACTTTGATACCTTGT+TGG - chr7_2:5893733-5893752 Msa1045740:intron 30.0%
GAATCAAGTACATAAGTAGA+TGG - chr7_2:5893813-5893832 Msa1045740:intron 30.0%
ATAACGAAAGCAATTGGAAT+TGG + chr7_2:5893853-5893872 None:intergenic 30.0%
TTGTTCATAACGAAAGCAAT+TGG + chr7_2:5893859-5893878 None:intergenic 30.0%
! GAACAAAACCTTGTTCTTTT+CGG - chr7_2:5893873-5893892 Msa1045740:intron 30.0%
!! TGTGTTATTGTCTTTTCCTT+AGG + chr7_2:5893950-5893969 None:intergenic 30.0%
! CAACTAGTTTAAAGTTAGTG+TGG + chr7_2:5893985-5894004 None:intergenic 30.0%
CTTTAAACTAGTTGCAATCT+TGG - chr7_2:5893991-5894010 Msa1045740:intron 30.0%
!!! GGGGGAAACTTTTTTTTAAT+AGG + chr7_2:5894020-5894039 None:intergenic 30.0%
AATTGAAAGTTGCAAAAAGG+GGG + chr7_2:5894038-5894057 None:intergenic 30.0%
!!! TGTTTTGTTTAGCAAGTTTC+AGG - chr7_2:5894104-5894123 Msa1045740:intron 30.0%
TTGTAAAAGGGGAAAACTTA+AGG - chr7_2:5894183-5894202 Msa1045740:intron 30.0%
ATGTATGATATATGGAGAGA+GGG - chr7_2:5894384-5894403 Msa1045740:intron 30.0%
CGAATGCATGTTTATATCAA+AGG - chr7_2:5894621-5894640 Msa1045740:intron 30.0%
TAAGAAGAACTTAATTGTGG+AGG + chr7_2:5894922-5894941 None:intergenic 30.0%
AAATGCATTAATCGAGAAGA+GGG + chr7_2:5893143-5893162 None:intergenic 30.0%
GAAGAAGGTTATGTTCATAA+CGG - chr7_2:5893273-5893292 Msa1045740:CDS 30.0%
AAGAAGGTTATGTTCATAAC+GGG - chr7_2:5893274-5893293 Msa1045740:CDS 30.0%
TTGAATTGATGAGTTCATAG+TGG + chr7_2:5893351-5893370 None:intergenic 30.0%
TTCAAATTATGGTACCAAGT+TGG + chr7_2:5893409-5893428 None:intergenic 30.0%
ATCGAACAACGTTCAAATTA+TGG + chr7_2:5893420-5893439 None:intergenic 30.0%
AATCATAGGGAAATCATATC+TGG + chr7_2:5893474-5893493 None:intergenic 30.0%
ATCTAACCATTATTGTAGGA+GGG - chr7_2:5893547-5893566 Msa1045740:intron 30.0%
TCAATTCCACATCACATATT+AGG + chr7_2:5893707-5893726 None:intergenic 30.0%
TTCATACTTTGATACCTTGT+TGG - chr7_2:5893733-5893752 Msa1045740:intron 30.0%
GAATCAAGTACATAAGTAGA+TGG - chr7_2:5893813-5893832 Msa1045740:intron 30.0%
ATAACGAAAGCAATTGGAAT+TGG + chr7_2:5893853-5893872 None:intergenic 30.0%
TTGTTCATAACGAAAGCAAT+TGG + chr7_2:5893859-5893878 None:intergenic 30.0%
! GAACAAAACCTTGTTCTTTT+CGG - chr7_2:5893873-5893892 Msa1045740:intron 30.0%
!! TGTGTTATTGTCTTTTCCTT+AGG + chr7_2:5893950-5893969 None:intergenic 30.0%
! CAACTAGTTTAAAGTTAGTG+TGG + chr7_2:5893985-5894004 None:intergenic 30.0%
CTTTAAACTAGTTGCAATCT+TGG - chr7_2:5893991-5894010 Msa1045740:intron 30.0%
!!! GGGGGAAACTTTTTTTTAAT+AGG + chr7_2:5894020-5894039 None:intergenic 30.0%
AATTGAAAGTTGCAAAAAGG+GGG + chr7_2:5894038-5894057 None:intergenic 30.0%
!!! TGTTTTGTTTAGCAAGTTTC+AGG - chr7_2:5894104-5894123 Msa1045740:intron 30.0%
TTGTAAAAGGGGAAAACTTA+AGG - chr7_2:5894183-5894202 Msa1045740:intron 30.0%
ATGTATGATATATGGAGAGA+GGG - chr7_2:5894384-5894403 Msa1045740:intron 30.0%
CGAATGCATGTTTATATCAA+AGG - chr7_2:5894621-5894640 Msa1045740:intron 30.0%
TAAGAAGAACTTAATTGTGG+AGG + chr7_2:5894922-5894941 None:intergenic 30.0%
GAAATGCATTAATCGAGAAG+AGG + chr7_2:5893144-5893163 None:intergenic 35.0%
GGACATCTAACCATTATTGT+AGG - chr7_2:5893543-5893562 Msa1045740:intron 35.0%
CATCTAACCATTATTGTAGG+AGG - chr7_2:5893546-5893565 Msa1045740:intron 35.0%
! TTTGATACCTTGTTGGTGAA+AGG - chr7_2:5893740-5893759 Msa1045740:intron 35.0%
! TTTTACTGTCCTGAATGGTT+GGG + chr7_2:5894074-5894093 None:intergenic 35.0%
! TTTTTACTGTCCTGAATGGT+TGG + chr7_2:5894075-5894094 None:intergenic 35.0%
!!! CTTGTTTTTACTGTCCTGAA+TGG + chr7_2:5894079-5894098 None:intergenic 35.0%
TTCAGGACAGTAAAAACAAG+CGG - chr7_2:5894079-5894098 Msa1045740:intron 35.0%
TGACCTTCTACTATCTTGAA+TGG - chr7_2:5894133-5894152 Msa1045740:intron 35.0%
CAACCATTCAAGATAGTAGA+AGG + chr7_2:5894139-5894158 None:intergenic 35.0%
CAACTAATACAAAGTTAGGG+AGG - chr7_2:5894243-5894262 Msa1045740:intron 35.0%
GATGTATGATATATGGAGAG+AGG - chr7_2:5894383-5894402 Msa1045740:intron 35.0%
!! GAGTTTGGAATCAATTTTGC+AGG - chr7_2:5894421-5894440 Msa1045740:intron 35.0%
!! TTTGGAATCAATTTTGCAGG+AGG - chr7_2:5894424-5894443 Msa1045740:intron 35.0%
! TTAACCACAATTTGCCCTTT+TGG - chr7_2:5894740-5894759 Msa1045740:intron 35.0%
! TAACCACAATTTGCCCTTTT+GGG - chr7_2:5894741-5894760 Msa1045740:intron 35.0%
! GAATGTTGATTGTGAAGTGA+TGG - chr7_2:5894786-5894805 Msa1045740:intron 35.0%
! TAGGGTTGTCCTTGATATTT+TGG + chr7_2:5894899-5894918 None:intergenic 35.0%
AGAACTTAATTGTGGAGGTA+GGG + chr7_2:5894917-5894936 None:intergenic 35.0%
AAGAACTTAATTGTGGAGGT+AGG + chr7_2:5894918-5894937 None:intergenic 35.0%
TTTCTGCAAGTTATCAAAGG+TGG + chr7_2:5894956-5894975 None:intergenic 35.0%
! ACCTTTGATAACTTGCAGAA+AGG - chr7_2:5894955-5894974 Msa1045740:intron 35.0%
TCCTTTCTGCAAGTTATCAA+AGG + chr7_2:5894959-5894978 None:intergenic 35.0%
AATTCACCAGGATACTATGA+CGG - chr7_2:5895000-5895019 Msa1045740:intron 35.0%
GAAATGCATTAATCGAGAAG+AGG + chr7_2:5893144-5893163 None:intergenic 35.0%
GGACATCTAACCATTATTGT+AGG - chr7_2:5893543-5893562 Msa1045740:intron 35.0%
CATCTAACCATTATTGTAGG+AGG - chr7_2:5893546-5893565 Msa1045740:intron 35.0%
! TTTGATACCTTGTTGGTGAA+AGG - chr7_2:5893740-5893759 Msa1045740:intron 35.0%
! TTTTACTGTCCTGAATGGTT+GGG + chr7_2:5894074-5894093 None:intergenic 35.0%
! TTTTTACTGTCCTGAATGGT+TGG + chr7_2:5894075-5894094 None:intergenic 35.0%
!!! CTTGTTTTTACTGTCCTGAA+TGG + chr7_2:5894079-5894098 None:intergenic 35.0%
TTCAGGACAGTAAAAACAAG+CGG - chr7_2:5894079-5894098 Msa1045740:intron 35.0%
TGACCTTCTACTATCTTGAA+TGG - chr7_2:5894133-5894152 Msa1045740:intron 35.0%
CAACCATTCAAGATAGTAGA+AGG + chr7_2:5894139-5894158 None:intergenic 35.0%
CAACTAATACAAAGTTAGGG+AGG - chr7_2:5894243-5894262 Msa1045740:intron 35.0%
GATGTATGATATATGGAGAG+AGG - chr7_2:5894383-5894402 Msa1045740:intron 35.0%
!! GAGTTTGGAATCAATTTTGC+AGG - chr7_2:5894421-5894440 Msa1045740:intron 35.0%
!! TTTGGAATCAATTTTGCAGG+AGG - chr7_2:5894424-5894443 Msa1045740:intron 35.0%
! TTAACCACAATTTGCCCTTT+TGG - chr7_2:5894740-5894759 Msa1045740:intron 35.0%
! TAACCACAATTTGCCCTTTT+GGG - chr7_2:5894741-5894760 Msa1045740:intron 35.0%
! GAATGTTGATTGTGAAGTGA+TGG - chr7_2:5894786-5894805 Msa1045740:intron 35.0%
! TAGGGTTGTCCTTGATATTT+TGG + chr7_2:5894899-5894918 None:intergenic 35.0%
AGAACTTAATTGTGGAGGTA+GGG + chr7_2:5894917-5894936 None:intergenic 35.0%
AAGAACTTAATTGTGGAGGT+AGG + chr7_2:5894918-5894937 None:intergenic 35.0%
TTTCTGCAAGTTATCAAAGG+TGG + chr7_2:5894956-5894975 None:intergenic 35.0%
! ACCTTTGATAACTTGCAGAA+AGG - chr7_2:5894955-5894974 Msa1045740:intron 35.0%
TCCTTTCTGCAAGTTATCAA+AGG + chr7_2:5894959-5894978 None:intergenic 35.0%
AATTCACCAGGATACTATGA+CGG - chr7_2:5895000-5895019 Msa1045740:intron 35.0%
! CTTCTTCTTTTCAGCTAGTG+AGG + chr7_2:5893260-5893279 None:intergenic 40.0%
CTCACTAGCTGAAAAGAAGA+AGG - chr7_2:5893258-5893277 Msa1045740:CDS 40.0%
! ATCTTGACTTGACACCAACT+TGG - chr7_2:5893392-5893411 Msa1045740:intron 40.0%
ATCTGACCCTCCTACAATAA+TGG + chr7_2:5893556-5893575 None:intergenic 40.0%
!! CTGAGTTGATGATTTCAGAG+AGG - chr7_2:5893791-5893810 Msa1045740:intron 40.0%
TATGCTAGCCGAAAAGAACA+AGG + chr7_2:5893884-5893903 None:intergenic 40.0%
! TCTTTTCGGCTAGCATATTG+AGG - chr7_2:5893887-5893906 Msa1045740:intron 40.0%
TCATTCAAACCCAACCATTC+AGG - chr7_2:5894062-5894081 Msa1045740:intron 40.0%
TCAGGACAGTAAAAACAAGC+GGG - chr7_2:5894080-5894099 Msa1045740:intron 40.0%
! TCAATTTTGCAGGAGGTTCA+TGG - chr7_2:5894431-5894450 Msa1045740:intron 40.0%
! AACCACAATTTGCCCTTTTG+GGG - chr7_2:5894742-5894761 Msa1045740:intron 40.0%
CATAGTATCCTGGTGAATTG+TGG + chr7_2:5894999-5895018 None:intergenic 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_2:5895036-5895055 Msa1045740:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG - chr7_2:5895065-5895084 Msa1045740:CDS 40.0%
CATTGTCGAATCCGATGATA+CGG + chr7_2:5895131-5895150 None:intergenic 40.0%
! CTTCTTCTTTTCAGCTAGTG+AGG + chr7_2:5893260-5893279 None:intergenic 40.0%
CTCACTAGCTGAAAAGAAGA+AGG - chr7_2:5893258-5893277 Msa1045740:CDS 40.0%
! ATCTTGACTTGACACCAACT+TGG - chr7_2:5893392-5893411 Msa1045740:intron 40.0%
ATCTGACCCTCCTACAATAA+TGG + chr7_2:5893556-5893575 None:intergenic 40.0%
!! CTGAGTTGATGATTTCAGAG+AGG - chr7_2:5893791-5893810 Msa1045740:intron 40.0%
TATGCTAGCCGAAAAGAACA+AGG + chr7_2:5893884-5893903 None:intergenic 40.0%
! TCTTTTCGGCTAGCATATTG+AGG - chr7_2:5893887-5893906 Msa1045740:intron 40.0%
TCATTCAAACCCAACCATTC+AGG - chr7_2:5894062-5894081 Msa1045740:intron 40.0%
TCAGGACAGTAAAAACAAGC+GGG - chr7_2:5894080-5894099 Msa1045740:intron 40.0%
! TCAATTTTGCAGGAGGTTCA+TGG - chr7_2:5894431-5894450 Msa1045740:intron 40.0%
! AACCACAATTTGCCCTTTTG+GGG - chr7_2:5894742-5894761 Msa1045740:intron 40.0%
CATAGTATCCTGGTGAATTG+TGG + chr7_2:5894999-5895018 None:intergenic 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG - chr7_2:5895036-5895055 Msa1045740:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG - chr7_2:5895065-5895084 Msa1045740:CDS 40.0%
CATTGTCGAATCCGATGATA+CGG + chr7_2:5895131-5895150 None:intergenic 40.0%
! CTTCTTTTCAGCTAGTGAGG+AGG + chr7_2:5893257-5893276 None:intergenic 45.0%
GTCTTGACCTTTCACCAACA+AGG + chr7_2:5893750-5893769 None:intergenic 45.0%
CAGGACAGTAAAAACAAGCG+GGG - chr7_2:5894081-5894100 Msa1045740:intron 45.0%
TGATATATGGAGAGAGGGAC+CGG - chr7_2:5894389-5894408 Msa1045740:intron 45.0%
TTCCAAACTCGCCTATTCAC+CGG + chr7_2:5894411-5894430 None:intergenic 45.0%
! ATTTTGCAGGAGGTTCATGG+AGG - chr7_2:5894434-5894453 Msa1045740:intron 45.0%
! TTTTGCAGGAGGTTCATGGA+GGG - chr7_2:5894435-5894454 Msa1045740:intron 45.0%
GGTAGAGGTCTTAGGACTTA+TGG - chr7_2:5894479-5894498 Msa1045740:intron 45.0%
ATGCAGCAAACACCCCAAAA+GGG + chr7_2:5894757-5894776 None:intergenic 45.0%
AATGCAGCAAACACCCCAAA+AGG + chr7_2:5894758-5894777 None:intergenic 45.0%
CTGGTGAATTGTGGTTCTCA+TGG + chr7_2:5894990-5895009 None:intergenic 45.0%
CATGAGAACCACAATTCACC+AGG - chr7_2:5894988-5895007 Msa1045740:intron 45.0%
TAACGTCCGTCATAGTATCC+TGG + chr7_2:5895009-5895028 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG - chr7_2:5895010-5895029 Msa1045740:intron 45.0%
GCATCAGTTGCTCCAAACAA+AGG + chr7_2:5895051-5895070 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_2:5895116-5895135 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_2:5895117-5895136 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_2:5895117-5895136 Msa1045740:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_2:5895124-5895143 None:intergenic 45.0%
! CTTCTTTTCAGCTAGTGAGG+AGG + chr7_2:5893257-5893276 None:intergenic 45.0%
GTCTTGACCTTTCACCAACA+AGG + chr7_2:5893750-5893769 None:intergenic 45.0%
CAGGACAGTAAAAACAAGCG+GGG - chr7_2:5894081-5894100 Msa1045740:intron 45.0%
TGATATATGGAGAGAGGGAC+CGG - chr7_2:5894389-5894408 Msa1045740:intron 45.0%
TTCCAAACTCGCCTATTCAC+CGG + chr7_2:5894411-5894430 None:intergenic 45.0%
! ATTTTGCAGGAGGTTCATGG+AGG - chr7_2:5894434-5894453 Msa1045740:intron 45.0%
! TTTTGCAGGAGGTTCATGGA+GGG - chr7_2:5894435-5894454 Msa1045740:intron 45.0%
GGTAGAGGTCTTAGGACTTA+TGG - chr7_2:5894479-5894498 Msa1045740:intron 45.0%
ATGCAGCAAACACCCCAAAA+GGG + chr7_2:5894757-5894776 None:intergenic 45.0%
AATGCAGCAAACACCCCAAA+AGG + chr7_2:5894758-5894777 None:intergenic 45.0%
CTGGTGAATTGTGGTTCTCA+TGG + chr7_2:5894990-5895009 None:intergenic 45.0%
CATGAGAACCACAATTCACC+AGG - chr7_2:5894988-5895007 Msa1045740:intron 45.0%
TAACGTCCGTCATAGTATCC+TGG + chr7_2:5895009-5895028 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG - chr7_2:5895010-5895029 Msa1045740:intron 45.0%
GCATCAGTTGCTCCAAACAA+AGG + chr7_2:5895051-5895070 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG + chr7_2:5895116-5895135 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG + chr7_2:5895117-5895136 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG - chr7_2:5895117-5895136 Msa1045740:intron 45.0%
GAATCCGATGATACGGACAA+AGG + chr7_2:5895124-5895143 None:intergenic 45.0%
GCGACGCCTAATATGTGATG+TGG - chr7_2:5893698-5893717 Msa1045740:intron 50.0%
GAGGGCAGGTTTATCGTTGT+AGG - chr7_2:5894453-5894472 Msa1045740:intron 50.0%
CAGGTTTATCGTTGTAGGCG+TGG - chr7_2:5894458-5894477 Msa1045740:intron 50.0%
TATCGTTGTAGGCGTGGTAG+AGG - chr7_2:5894464-5894483 Msa1045740:intron 50.0%
CACCCCAAAAGGGCAAATTG+TGG + chr7_2:5894747-5894766 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG - chr7_2:5895019-5895038 Msa1045740:intron 50.0%
GCGACGCCTAATATGTGATG+TGG - chr7_2:5893698-5893717 Msa1045740:intron 50.0%
GAGGGCAGGTTTATCGTTGT+AGG - chr7_2:5894453-5894472 Msa1045740:intron 50.0%
CAGGTTTATCGTTGTAGGCG+TGG - chr7_2:5894458-5894477 Msa1045740:intron 50.0%
TATCGTTGTAGGCGTGGTAG+AGG - chr7_2:5894464-5894483 Msa1045740:intron 50.0%
CACCCCAAAAGGGCAAATTG+TGG + chr7_2:5894747-5894766 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG - chr7_2:5895019-5895038 Msa1045740:intron 50.0%
GACCGGTGAATAGGCGAGTT+TGG - chr7_2:5894406-5894425 Msa1045740:intron 55.0%
GTAGGCGTGGTAGAGGTCTT+AGG - chr7_2:5894471-5894490 Msa1045740:intron 55.0%
GACCGGTGAATAGGCGAGTT+TGG - chr7_2:5894406-5894425 Msa1045740:intron 55.0%
GTAGGCGTGGTAGAGGTCTT+AGG - chr7_2:5894471-5894490 Msa1045740:intron 55.0%
GGAGAGAGGGACCGGTGAAT+AGG - chr7_2:5894397-5894416 Msa1045740:intron 60.0%
GGAGAGAGGGACCGGTGAAT+AGG - chr7_2:5894397-5894416 Msa1045740:intron 60.0%
GCAGGAGGTTCATGGAGGGC+AGG - chr7_2:5894439-5894458 Msa1045740:intron 65.0%
GCAGGAGGTTCATGGAGGGC+AGG - chr7_2:5894439-5894458 Msa1045740:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 5893105 5895203 5893105 ID=Msa1045740;Name=Msa1045740
chr7_2 mRNA 5893105 5895203 5893105 ID=Msa1045740-mRNA-1;Parent=Msa1045740;Name=Msa1045740-mRNA-1;_AED=0.48;_eAED=0.48;_QI=0|0|0|0.66|1|1|3|0|104
chr7_2 exon 5895199 5895203 5895199 ID=Msa1045740-mRNA-1:exon:1312;Parent=Msa1045740-mRNA-1
chr7_2 exon 5895029 5895086 5895029 ID=Msa1045740-mRNA-1:exon:1311;Parent=Msa1045740-mRNA-1
chr7_2 exon 5893105 5893356 5893105 ID=Msa1045740-mRNA-1:exon:1310;Parent=Msa1045740-mRNA-1
chr7_2 CDS 5895199 5895203 5895199 ID=Msa1045740-mRNA-1:cds;Parent=Msa1045740-mRNA-1
chr7_2 CDS 5895029 5895086 5895029 ID=Msa1045740-mRNA-1:cds;Parent=Msa1045740-mRNA-1
chr7_2 CDS 5893105 5893356 5893105 ID=Msa1045740-mRNA-1:cds;Parent=Msa1045740-mRNA-1
Gene Sequence

>Msa1045740

ATGAAGTTTTACATCAAAAATCTCACGGCGTTCGCTTCCTCCTCACTAGCTGAAAAGAAGAAGTCCACCTTTGATAACTTGCAGAAAGGATTTGTGTACCATGAGAACCACAATTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGTTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAATGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCACCAGTTTACTAA

Protein sequence

>Msa1045740

MKFYIKNLTAFASSSLAEKKKSTFDNLQKGFVYHENHNSPGYYDGRYWTMWKLPLFGATDASQVLKEFDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPPVY*