AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0439130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439130 MtrunA17_Chr7g0215381 94.737 171 9 0 11 181 11 181 1.33e-124 348
Msa0439130 MtrunA17_Chr7g0215351 94.152 171 10 0 11 181 11 181 1.91e-124 348
Msa0439130 MtrunA17_Chr7g0215421 94.152 171 10 0 11 181 11 181 4.22e-124 347
Msa0439130 MtrunA17_Chr7g0215361 94.118 170 10 0 12 181 12 181 8.70e-124 346
Msa0439130 MtrunA17_Chr7g0215431 94.706 170 9 0 12 181 12 181 7.15e-123 343
Msa0439130 MtrunA17_Chr6g0457471 84.916 179 26 1 4 181 2 180 5.91e-115 323
Msa0439130 MtrunA17_Chr6g0457461 84.358 179 24 2 4 181 2 177 3.64e-112 317
Msa0439130 MtrunA17_Chr4g0072241 50.641 156 73 3 28 180 15 169 1.16e-57 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0439130 AT1G67090.1 71.429 182 47 2 1 181 1 178 1.04e-93 270
Msa0439130 AT5G38430.1 70.330 182 49 2 1 181 1 178 1.01e-92 268
Msa0439130 AT5G38430.2 70.330 182 49 2 1 181 1 178 1.01e-92 268
Msa0439130 AT5G38410.1 69.780 182 50 2 1 181 1 178 2.16e-92 267
Msa0439130 AT5G38420.1 69.780 182 50 2 1 181 1 178 5.92e-92 266
Msa0439130 AT5G38410.3 67.914 187 50 3 1 181 1 183 3.78e-90 261
Msa0439130 AT5G38410.2 67.033 182 48 3 1 181 1 171 1.65e-85 249
Msa0439130 AT1G67090.2 65.217 115 35 2 1 114 1 111 1.56e-45 147

Find 73 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTCATGTGGTTAATA+TGG 0.180964 3_3:+4649242 Msa0439130:five_prime_UTR
AATTAAAAGCAAAACATAAA+TGG 0.195661 3_3:-4650329 None:intergenic
TCCTTGTTGATCTTTGTAAT+TGG 0.210267 3_3:-4649516 None:intergenic
ATTAATTATACCAATGGTTT+TGG 0.223375 3_3:-4649290 None:intergenic
AAGTTCATTGCATTGGAATT+TGG 0.263973 3_3:+4650287 Msa0439130:exon
AAGAAGTTGATTACCTTATA+AGG 0.266546 3_3:+4649877 Msa0439130:CDS
CAACCCATCCCTTCCTTATA+AGG 0.273690 3_3:-4649890 None:intergenic
GGCGCGGTGGCTCCATTTGT+TGG 0.347642 3_3:+4649471 Msa0439130:CDS
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 3_3:+4649899 Msa0439130:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 3_3:+4650095 Msa0439130:CDS
TTCTTTCGCCAATTGTTCTC+TGG 0.378466 3_3:-4649859 None:intergenic
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 3_3:+4650150 Msa0439130:CDS
TCTTCCACCATTGCTTGTAA+TGG 0.401668 3_3:-4649547 None:intergenic
GCCAATTGTTCTCTGGTCAA+TGG 0.405140 3_3:-4649852 None:intergenic
CCATATTAACCACATGAGAT+TGG 0.409471 3_3:-4649242 None:intergenic
ACCATTGACCAGAGAACAAT+TGG 0.409622 3_3:+4649851 Msa0439130:CDS
TTAAGAGTTAATGAATGAAA+TGG 0.410036 3_3:+4650433 Msa0439130:three_prime_UTR
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 3_3:+4650121 Msa0439130:CDS
ATATAGGTGTGGCCTCCTAT+TGG 0.416991 3_3:+4649795 Msa0439130:intron
GTCTACTAAGTTCATTGCAT+TGG 0.420283 3_3:+4650280 Msa0439130:exon
GTTGGACTCAAGTCCATGGC+TGG 0.431505 3_3:+4649489 Msa0439130:CDS
CCTTGTTGATCTTTGTAATT+GGG 0.431774 3_3:-4649515 None:intergenic
TCAAACTTCTTCTTGCCAAT+AGG 0.435101 3_3:-4649810 None:intergenic
ATTAAAAGCAAAACATAAAT+GGG 0.436679 3_3:-4650328 None:intergenic
ATGATACGGACAAAGGCATC+AGG 0.443523 3_3:-4650199 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 3_3:-4650149 None:intergenic
CGCGCCTCGTCGGTTCAATC+CGG 0.461844 3_3:+4649450 Msa0439130:CDS
CATAGTGGTGCATTATGATA+AGG 0.462755 3_3:+4649196 Msa0439130:five_prime_UTR
CATATTAACCACATGAGATT+GGG 0.468050 3_3:-4649241 None:intergenic
CAAGTGAAGATAAGATTAGT+AGG 0.473443 3_3:+4649152 Msa0439130:five_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 3_3:+4650202 Msa0439130:CDS
CCTTGTTTGGTGACATGTGT+TGG 0.503442 3_3:+4650489 Msa0439130:three_prime_UTR
ATTACCTTATAAGGAAGGGA+TGG 0.507588 3_3:+4649886 Msa0439130:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 3_3:-4649807 None:intergenic
ATTTGTTGGACTCAAGTCCA+TGG 0.520007 3_3:+4649485 Msa0439130:CDS
AGTTGATTACCTTATAAGGA+AGG 0.522099 3_3:+4649881 Msa0439130:CDS
TTTCTGATTAATTATACCAA+TGG 0.524266 3_3:-4649296 None:intergenic
ATGGACTTGAGTCCAACAAA+TGG 0.526746 3_3:-4649483 None:intergenic
TCCACCATTGCTTGTAATGG+AGG 0.530318 3_3:-4649544 None:intergenic
CATAGTATCCTGGTGACTTG+TGG 0.542155 3_3:-4650081 None:intergenic
CGTGAGAACCACAAGTCACC+AGG 0.544938 3_3:+4650073 Msa0439130:CDS
CCAACACATGTCACCAAACA+AGG 0.545390 3_3:-4650489 None:intergenic
AACTGTAGTTACAGCTGAAG+AGG 0.546956 3_3:-4649424 None:intergenic
TTACCTTATAAGGAAGGGAT+GGG 0.559428 3_3:+4649887 Msa0439130:CDS
AACAAATGGAGCCACCGCGC+CGG 0.560979 3_3:-4649469 None:intergenic
TACAGTTAACCGCGCCTCGT+CGG 0.566785 3_3:+4649440 Msa0439130:CDS
GTTGATTACCTTATAAGGAA+GGG 0.567383 3_3:+4649882 Msa0439130:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 3_3:-4650091 None:intergenic
CAATGAACTTAGTAGACTGC+AGG 0.571658 3_3:-4650274 None:intergenic
TCCACGTGACATTCACATAG+TGG 0.573748 3_3:+4649181 Msa0439130:five_prime_UTR
AAGTCACCAGGATACTATGA+TGG 0.574009 3_3:+4650085 Msa0439130:CDS
CGGATTGAACCGACGAGGCG+CGG 0.577823 3_3:-4649449 None:intergenic
CGTTGTCGAATCCGATGATA+CGG 0.579522 3_3:-4650213 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 3_3:-4650072 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 3_3:-4650133 None:intergenic
TGTAATTGGGAAGCCAGCCA+TGG 0.598497 3_3:-4649502 None:intergenic
ATTGTGAAAATGATAAACAT+TGG 0.600821 3_3:-4649267 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.600961 3_3:-4649849 None:intergenic
ATTACCTCCATTACAAGCAA+TGG 0.601253 3_3:+4649540 Msa0439130:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 3_3:+4649914 Msa0439130:CDS
ACCTCCATTACAAGCAATGG+TGG 0.613355 3_3:+4649543 Msa0439130:CDS
TAATTAACAATTAACAACAA+TGG 0.615285 3_3:+4649386 Msa0439130:exon
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 3_3:-4649845 None:intergenic
GTCGGTTCAATCCGGCGCGG+TGG 0.622925 3_3:+4649458 Msa0439130:CDS
CCCAATTACAAAGATCAACA+AGG 0.645329 3_3:+4649515 Msa0439130:CDS
TGGAAGAGTAAACTGCATGC+AGG 0.652563 3_3:+4649563 Msa0439130:CDS
AGCTGAAGAGGAGATCATAG+AGG 0.655372 3_3:-4649412 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 3_3:-4650198 None:intergenic
CGCGCCGGATTGAACCGACG+AGG 0.686777 3_3:-4649454 None:intergenic
GAATCCGATGATACGGACAA+AGG 0.687909 3_3:-4650206 None:intergenic
CTCGTCGGTTCAATCCGGCG+CGG 0.728671 3_3:+4649455 Msa0439130:CDS
ACCACTATGTGAATGTCACG+TGG 0.738979 3_3:-4649182 None:intergenic
ATGGACGTTACTGGACAATG+TGG 0.742197 3_3:+4650104 Msa0439130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATAATGTTTTGAAAT+TGG - chr3_3:4649322-4649341 None:intergenic 10.0%
!!! TTTATATAATGTTTTGAAAT+TGG - chr3_3:4649322-4649341 None:intergenic 10.0%
!! GAAAAAAAAAAATTGTATAC+TGG - chr3_3:4649222-4649241 None:intergenic 15.0%
!! TAATTAACAATTAACAACAA+TGG + chr3_3:4649386-4649405 Msa0439130:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr3_3:4649640-4649659 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr3_3:4649640-4649659 Msa0439130:intron 15.0%
!! ATTAAAAGCAAAACATAAAT+GGG - chr3_3:4650331-4650350 None:intergenic 15.0%
!! AATTAAAAGCAAAACATAAA+TGG - chr3_3:4650332-4650351 None:intergenic 15.0%
!! GAAAAAAAAAAATTGTATAC+TGG - chr3_3:4649222-4649241 None:intergenic 15.0%
!! TAATTAACAATTAACAACAA+TGG + chr3_3:4649386-4649405 Msa0439130:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr3_3:4649640-4649659 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr3_3:4649640-4649659 Msa0439130:intron 15.0%
!! ATTAAAAGCAAAACATAAAT+GGG - chr3_3:4650331-4650350 None:intergenic 15.0%
!! AATTAAAAGCAAAACATAAA+TGG - chr3_3:4650332-4650351 None:intergenic 15.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr3_3:4649270-4649289 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr3_3:4649293-4649312 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr3_3:4649299-4649318 None:intergenic 20.0%
!!! GATTTCATGTTTTTTTCATA+AGG + chr3_3:4649685-4649704 Msa0439130:intron 20.0%
!! AATAACATTAATAGAGTCAT+TGG + chr3_3:4649721-4649740 Msa0439130:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr3_3:4649768-4649787 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr3_3:4649769-4649788 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr3_3:4649779-4649798 Msa0439130:intron 20.0%
!!! TAATTTCCATTTCTTTTTCA+AGG + chr3_3:4650347-4650366 Msa0439130:three_prime_UTR 20.0%
!!! TGTTTTTATATTTCTGTCTT+TGG + chr3_3:4650386-4650405 Msa0439130:three_prime_UTR 20.0%
!! TTAAGAGTTAATGAATGAAA+TGG + chr3_3:4650433-4650452 Msa0439130:three_prime_UTR 20.0%
!!! TAACCATTTTTAAGTAACTT+GGG - chr3_3:4650469-4650488 None:intergenic 20.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr3_3:4649270-4649289 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr3_3:4649293-4649312 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr3_3:4649299-4649318 None:intergenic 20.0%
!!! GATTTCATGTTTTTTTCATA+AGG + chr3_3:4649685-4649704 Msa0439130:intron 20.0%
!! AATAACATTAATAGAGTCAT+TGG + chr3_3:4649721-4649740 Msa0439130:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr3_3:4649768-4649787 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr3_3:4649769-4649788 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr3_3:4649779-4649798 Msa0439130:intron 20.0%
!!! TAATTTCCATTTCTTTTTCA+AGG + chr3_3:4650347-4650366 Msa0439130:three_prime_UTR 20.0%
!!! TGTTTTTATATTTCTGTCTT+TGG + chr3_3:4650386-4650405 Msa0439130:three_prime_UTR 20.0%
!! TTAAGAGTTAATGAATGAAA+TGG + chr3_3:4650433-4650452 Msa0439130:three_prime_UTR 20.0%
!!! TAACCATTTTTAAGTAACTT+GGG - chr3_3:4650469-4650488 None:intergenic 20.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr3_3:4649767-4649786 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr3_3:4649877-4649896 Msa0439130:CDS 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr3_3:4650025-4650044 Msa0439130:intron 25.0%
! ACATTTCCTTGAAAAAGAAA+TGG - chr3_3:4650356-4650375 None:intergenic 25.0%
! ATTCCCAAGTTACTTAAAAA+TGG + chr3_3:4650463-4650482 Msa0439130:three_prime_UTR 25.0%
!!! GTAACCATTTTTAAGTAACT+TGG - chr3_3:4650470-4650489 None:intergenic 25.0%
! TTAAAAATGGTTACCTTGTT+TGG + chr3_3:4650476-4650495 Msa0439130:three_prime_UTR 25.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr3_3:4649767-4649786 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr3_3:4649877-4649896 Msa0439130:CDS 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr3_3:4650025-4650044 Msa0439130:intron 25.0%
! ACATTTCCTTGAAAAAGAAA+TGG - chr3_3:4650356-4650375 None:intergenic 25.0%
! ATTCCCAAGTTACTTAAAAA+TGG + chr3_3:4650463-4650482 Msa0439130:three_prime_UTR 25.0%
!!! GTAACCATTTTTAAGTAACT+TGG - chr3_3:4650470-4650489 None:intergenic 25.0%
! TTAAAAATGGTTACCTTGTT+TGG + chr3_3:4650476-4650495 Msa0439130:three_prime_UTR 25.0%
CAAGTGAAGATAAGATTAGT+AGG + chr3_3:4649152-4649171 Msa0439130:five_prime_UTR 30.0%
!!! TTTTTTTTCCCAATCTCATG+TGG + chr3_3:4649233-4649252 Msa0439130:five_prime_UTR 30.0%
CATATTAACCACATGAGATT+GGG - chr3_3:4649244-4649263 None:intergenic 30.0%
! TTTTCACAATCCAAAACCAT+TGG + chr3_3:4649280-4649299 Msa0439130:five_prime_UTR 30.0%
CCTTGTTGATCTTTGTAATT+GGG - chr3_3:4649518-4649537 None:intergenic 30.0%
TCCTTGTTGATCTTTGTAAT+TGG - chr3_3:4649519-4649538 None:intergenic 30.0%
! GGGCTTAATAAAATTTTGCA+TGG - chr3_3:4649747-4649766 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr3_3:4649784-4649803 Msa0439130:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr3_3:4649881-4649900 Msa0439130:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr3_3:4649882-4649901 Msa0439130:CDS 30.0%
TTGCAAGTAATATTAGACCT+CGG - chr3_3:4649934-4649953 None:intergenic 30.0%
AAGTTCATTGCATTGGAATT+TGG + chr3_3:4650287-4650306 Msa0439130:exon 30.0%
CAAGTGAAGATAAGATTAGT+AGG + chr3_3:4649152-4649171 Msa0439130:five_prime_UTR 30.0%
!!! TTTTTTTTCCCAATCTCATG+TGG + chr3_3:4649233-4649252 Msa0439130:five_prime_UTR 30.0%
CATATTAACCACATGAGATT+GGG - chr3_3:4649244-4649263 None:intergenic 30.0%
! TTTTCACAATCCAAAACCAT+TGG + chr3_3:4649280-4649299 Msa0439130:five_prime_UTR 30.0%
CCTTGTTGATCTTTGTAATT+GGG - chr3_3:4649518-4649537 None:intergenic 30.0%
TCCTTGTTGATCTTTGTAAT+TGG - chr3_3:4649519-4649538 None:intergenic 30.0%
! GGGCTTAATAAAATTTTGCA+TGG - chr3_3:4649747-4649766 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr3_3:4649784-4649803 Msa0439130:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr3_3:4649881-4649900 Msa0439130:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr3_3:4649882-4649901 Msa0439130:CDS 30.0%
TTGCAAGTAATATTAGACCT+CGG - chr3_3:4649934-4649953 None:intergenic 30.0%
AAGTTCATTGCATTGGAATT+TGG + chr3_3:4650287-4650306 Msa0439130:exon 30.0%
CATAGTGGTGCATTATGATA+AGG + chr3_3:4649196-4649215 Msa0439130:five_prime_UTR 35.0%
CCATATTAACCACATGAGAT+TGG - chr3_3:4649245-4649264 None:intergenic 35.0%
CCAATCTCATGTGGTTAATA+TGG + chr3_3:4649242-4649261 Msa0439130:five_prime_UTR 35.0%
CCCAATTACAAAGATCAACA+AGG + chr3_3:4649515-4649534 Msa0439130:CDS 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr3_3:4649540-4649559 Msa0439130:CDS 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4649813-4649832 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr3_3:4649886-4649905 Msa0439130:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr3_3:4649887-4649906 Msa0439130:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr3_3:4650152-4650171 None:intergenic 35.0%
GTCTACTAAGTTCATTGCAT+TGG + chr3_3:4650280-4650299 Msa0439130:exon 35.0%
CATAGTGGTGCATTATGATA+AGG + chr3_3:4649196-4649215 Msa0439130:five_prime_UTR 35.0%
CCATATTAACCACATGAGAT+TGG - chr3_3:4649245-4649264 None:intergenic 35.0%
CCAATCTCATGTGGTTAATA+TGG + chr3_3:4649242-4649261 Msa0439130:five_prime_UTR 35.0%
CCCAATTACAAAGATCAACA+AGG + chr3_3:4649515-4649534 Msa0439130:CDS 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr3_3:4649540-4649559 Msa0439130:CDS 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr3_3:4649813-4649832 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr3_3:4649886-4649905 Msa0439130:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr3_3:4649887-4649906 Msa0439130:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr3_3:4650152-4650171 None:intergenic 35.0%
GTCTACTAAGTTCATTGCAT+TGG + chr3_3:4650280-4650299 Msa0439130:exon 35.0%
AACTGTAGTTACAGCTGAAG+AGG - chr3_3:4649427-4649446 None:intergenic 40.0%
ATGGACTTGAGTCCAACAAA+TGG - chr3_3:4649486-4649505 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr3_3:4649485-4649504 Msa0439130:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr3_3:4649550-4649569 None:intergenic 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4649810-4649829 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4649852-4649871 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4649851-4649870 Msa0439130:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr3_3:4649862-4649881 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4649994-4650013 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr3_3:4650040-4650059 Msa0439130:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr3_3:4650085-4650104 Msa0439130:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr3_3:4650094-4650113 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr3_3:4650095-4650114 Msa0439130:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr3_3:4650121-4650140 Msa0439130:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr3_3:4650150-4650169 Msa0439130:CDS 40.0%
CAATGAACTTAGTAGACTGC+AGG - chr3_3:4650277-4650296 None:intergenic 40.0%
AACTGTAGTTACAGCTGAAG+AGG - chr3_3:4649427-4649446 None:intergenic 40.0%
ATGGACTTGAGTCCAACAAA+TGG - chr3_3:4649486-4649505 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr3_3:4649485-4649504 Msa0439130:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr3_3:4649550-4649569 None:intergenic 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr3_3:4649810-4649829 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr3_3:4649852-4649871 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr3_3:4649851-4649870 Msa0439130:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr3_3:4649862-4649881 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr3_3:4649994-4650013 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr3_3:4650040-4650059 Msa0439130:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr3_3:4650085-4650104 Msa0439130:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr3_3:4650094-4650113 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr3_3:4650095-4650114 Msa0439130:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr3_3:4650121-4650140 Msa0439130:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr3_3:4650150-4650169 Msa0439130:CDS 40.0%
CAATGAACTTAGTAGACTGC+AGG - chr3_3:4650277-4650296 None:intergenic 40.0%
TCCACGTGACATTCACATAG+TGG + chr3_3:4649181-4649200 Msa0439130:five_prime_UTR 45.0%
ACCACTATGTGAATGTCACG+TGG - chr3_3:4649185-4649204 None:intergenic 45.0%
AGCTGAAGAGGAGATCATAG+AGG - chr3_3:4649415-4649434 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr3_3:4649543-4649562 Msa0439130:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr3_3:4649547-4649566 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4649563-4649582 Msa0439130:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr3_3:4649795-4649814 Msa0439130:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4649855-4649874 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4649893-4649912 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr3_3:4649914-4649933 Msa0439130:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr3_3:4650084-4650103 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr3_3:4650104-4650123 Msa0439130:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr3_3:4650136-4650155 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4650201-4650220 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4650202-4650221 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4650202-4650221 Msa0439130:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4650209-4650228 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4650216-4650235 None:intergenic 45.0%
CCAACACATGTCACCAAACA+AGG - chr3_3:4650492-4650511 None:intergenic 45.0%
! CCTTGTTTGGTGACATGTGT+TGG + chr3_3:4650489-4650508 Msa0439130:three_prime_UTR 45.0%
TCCACGTGACATTCACATAG+TGG + chr3_3:4649181-4649200 Msa0439130:five_prime_UTR 45.0%
ACCACTATGTGAATGTCACG+TGG - chr3_3:4649185-4649204 None:intergenic 45.0%
AGCTGAAGAGGAGATCATAG+AGG - chr3_3:4649415-4649434 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr3_3:4649543-4649562 Msa0439130:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr3_3:4649547-4649566 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr3_3:4649563-4649582 Msa0439130:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr3_3:4649795-4649814 Msa0439130:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr3_3:4649855-4649874 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr3_3:4649893-4649912 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr3_3:4649914-4649933 Msa0439130:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr3_3:4650084-4650103 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr3_3:4650104-4650123 Msa0439130:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr3_3:4650136-4650155 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr3_3:4650201-4650220 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr3_3:4650202-4650221 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr3_3:4650202-4650221 Msa0439130:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr3_3:4650209-4650228 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr3_3:4650216-4650235 None:intergenic 45.0%
CCAACACATGTCACCAAACA+AGG - chr3_3:4650492-4650511 None:intergenic 45.0%
TGTAATTGGGAAGCCAGCCA+TGG - chr3_3:4649505-4649524 None:intergenic 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4649848-4649867 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr3_3:4649974-4649993 Msa0439130:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr3_3:4650075-4650094 None:intergenic 50.0%
TGTAATTGGGAAGCCAGCCA+TGG - chr3_3:4649505-4649524 None:intergenic 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr3_3:4649848-4649867 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr3_3:4649974-4649993 Msa0439130:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr3_3:4650075-4650094 None:intergenic 50.0%
TACAGTTAACCGCGCCTCGT+CGG + chr3_3:4649440-4649459 Msa0439130:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr3_3:4649489-4649508 Msa0439130:CDS 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr3_3:4649899-4649918 Msa0439130:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr3_3:4650073-4650092 Msa0439130:CDS 55.0%
TACAGTTAACCGCGCCTCGT+CGG + chr3_3:4649440-4649459 Msa0439130:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr3_3:4649489-4649508 Msa0439130:CDS 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr3_3:4649899-4649918 Msa0439130:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr3_3:4650073-4650092 Msa0439130:CDS 55.0%
AACAAATGGAGCCACCGCGC+CGG - chr3_3:4649472-4649491 None:intergenic 60.0%
AACAAATGGAGCCACCGCGC+CGG - chr3_3:4649472-4649491 None:intergenic 60.0%
CGGATTGAACCGACGAGGCG+CGG - chr3_3:4649452-4649471 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr3_3:4649450-4649469 Msa0439130:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr3_3:4649455-4649474 Msa0439130:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr3_3:4649471-4649490 Msa0439130:CDS 65.0%
CGGATTGAACCGACGAGGCG+CGG - chr3_3:4649452-4649471 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr3_3:4649450-4649469 Msa0439130:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr3_3:4649455-4649474 Msa0439130:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr3_3:4649471-4649490 Msa0439130:CDS 65.0%
CGCGCCGGATTGAACCGACG+AGG - chr3_3:4649457-4649476 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr3_3:4649458-4649477 Msa0439130:CDS 70.0%
CGCGCCGGATTGAACCGACG+AGG - chr3_3:4649457-4649476 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr3_3:4649458-4649477 Msa0439130:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 4649137 4650511 4649137 ID=Msa0439130;Name=Msa0439130
chr3_3 mRNA 4649137 4650511 4649137 ID=Msa0439130-mRNA-1;Parent=Msa0439130;Name=Msa0439130-mRNA-1;_AED=0.38;_eAED=0.38;_QI=268|1|1|1|1|1|3|223|181
chr3_3 exon 4649137 4649584 4649137 ID=Msa0439130-mRNA-1:exon:991;Parent=Msa0439130-mRNA-1
chr3_3 exon 4649801 4649935 4649801 ID=Msa0439130-mRNA-1:exon:992;Parent=Msa0439130-mRNA-1
chr3_3 exon 4650058 4650511 4650058 ID=Msa0439130-mRNA-1:exon:993;Parent=Msa0439130-mRNA-1
chr3_3 five_prime_UTR 4649137 4649404 4649137 ID=Msa0439130-mRNA-1:five_prime_utr;Parent=Msa0439130-mRNA-1
chr3_3 CDS 4649405 4649584 4649405 ID=Msa0439130-mRNA-1:cds;Parent=Msa0439130-mRNA-1
chr3_3 CDS 4649801 4649935 4649801 ID=Msa0439130-mRNA-1:cds;Parent=Msa0439130-mRNA-1
chr3_3 CDS 4650058 4650288 4650058 ID=Msa0439130-mRNA-1:cds;Parent=Msa0439130-mRNA-1
chr3_3 three_prime_UTR 4650289 4650511 4650289 ID=Msa0439130-mRNA-1:three_prime_utr;Parent=Msa0439130-mRNA-1
Gene Sequence

>Msa0439130

ATGGCTGCCTCTATGATCTCCTCTTCAGCTGTAACTACAGTTAACCGCGCCTCGTCGGTTCAATCCGGCGCGGTGGCTCCATTTGTTGGACTCAAGTCCATGGCTGGCTTCCCAATTACAAAGATCAACAAGGACATTACCTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCGAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa0439130

MAASMISSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPITKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*