AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161550 MtrunA17_Chr7g0255141 99.256 403 3 0 1 403 1 403 0.0 831
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161550 AT3G56940.1 85.366 410 52 4 1 403 1 409 0.0 695
Msa1161550 AT3G56940.2 91.566 332 28 0 72 403 1 332 0.0 641

Find 101 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTAGGAACAAGGAGTTTA+AGG 0.155204 7_4:+51756952 Msa1161550:CDS
GCCATTTCTGCTGCCATAAT+TGG 0.175676 7_4:-51756632 None:intergenic
ACATATTTGTCTGAGAAAAT+TGG 0.198268 7_4:+51757878 Msa1161550:CDS
TGTTTCTTAGCTGTTGATTT+TGG 0.214202 7_4:+51759348 Msa1161550:three_prime_UTR
TGTAGCATAGAAAATAAATT+TGG 0.215744 7_4:-51757858 None:intergenic
CTTCAAACTCATCTTCATTA+AGG 0.226003 7_4:-51756886 None:intergenic
TATGATGAAACTGTTCTTCT+AGG 0.267498 7_4:-51756701 None:intergenic
GGGTTTATCTGATTTCAATT+TGG 0.291421 7_4:+51757784 Msa1161550:CDS
GTTGTTAAACACAAGTAAAT+TGG 0.291480 7_4:-51759376 None:intergenic
CTAGGAATGTTGCTGAGTTT+TGG 0.306052 7_4:-51756683 None:intergenic
TCCAACTTTCGCTTAAACTC+TGG 0.309477 7_4:-51758868 None:intergenic
TTGTTTGAGATGTCTGTATA+TGG 0.316017 7_4:-51757918 None:intergenic
CACCAATAGCAAGAATCTTC+TGG 0.328187 7_4:-51758909 None:intergenic
TGCCCTGGTGTCTGAGCTCT+TGG 0.335522 7_4:+51758984 Msa1161550:CDS
TCCAATTATGGCAGCAGAAA+TGG 0.336647 7_4:+51756631 Msa1161550:exon
GTTTCTACTTGTGGTATGAT+TGG 0.344845 7_4:-51756439 None:intergenic
GTAGGGATCAAAAGGAAATA+AGG 0.350102 7_4:-51759096 None:intergenic
TGTCAAAAGGGTTTCTTTGA+TGG 0.359839 7_4:-51756798 None:intergenic
TGAGTTTGAAGCTTTGCTTC+AGG 0.359858 7_4:+51756898 Msa1161550:CDS
AACCAGAAGATTCTTGCTAT+TGG 0.362875 7_4:+51758907 Msa1161550:CDS
TTAACGTTCAAAGATTTCAT+TGG 0.373482 7_4:+51756492 Msa1161550:five_prime_UTR
CAGTAGTGAAGAACTTTAAG+AGG 0.381376 7_4:+51758947 Msa1161550:CDS
TTTCAATTTGGCATTGGACT+TGG 0.383087 7_4:+51757796 Msa1161550:CDS
ACAGATTTCTATGAAGGAAT+TGG 0.383574 7_4:+51758584 Msa1161550:CDS
TGGAGTAGCAGACATTCTTA+TGG 0.384160 7_4:-51756726 None:intergenic
AGATTTCCCCGAGTTTGAAC+GGG 0.384488 7_4:+51759044 Msa1161550:CDS
CTCCATGCCTGTTCTCATCT+TGG 0.390251 7_4:-51757991 None:intergenic
TCTTGTACTGCTGAATTCTC+TGG 0.393467 7_4:+51757034 Msa1161550:CDS
TGTAGAATCTTGGTGTCAAA+AGG 0.394484 7_4:-51756811 None:intergenic
TGTTAATCTCAGTGTTGAAA+AGG 0.401359 7_4:-51756859 None:intergenic
CCTCACTCTTATATTCCAAT+TGG 0.419509 7_4:+51759298 Msa1161550:three_prime_UTR
GTAGCATAGAAAATAAATTT+GGG 0.422678 7_4:-51757857 None:intergenic
CCAACTTTCGCTTAAACTCT+GGG 0.428319 7_4:-51758867 None:intergenic
TTCTCAACATCAAGTACAGC+TGG 0.433804 7_4:-51758844 None:intergenic
TGCTAGAGAGACCTTCCAAT+TGG 0.436000 7_4:-51759313 None:intergenic
TCTACGGATCCTGACTCAAT+TGG 0.440457 7_4:-51759024 None:intergenic
TGTCTGAGAAAATTGGATAC+TGG 0.442138 7_4:+51757885 Msa1161550:CDS
AGAGCTTGGAAGGAGGCTTA+AGG 0.444337 7_4:+51757072 Msa1161550:CDS
GTCTCGCTTCTTCTGTCTAT+CGG 0.446676 7_4:+51758078 Msa1161550:CDS
GGAAAATCCTCGCAGTTGTT+CGG 0.448271 7_4:-51758822 None:intergenic
TTCAATTTGGCATTGGACTT+GGG 0.448463 7_4:+51757797 Msa1161550:CDS
ATCTGATTTCAATTTGGCAT+TGG 0.448946 7_4:+51757790 Msa1161550:CDS
AAATCAGTTGTGTAGAATCT+TGG 0.450494 7_4:-51756821 None:intergenic
TTGTTGTATGTTTCTACTTG+TGG 0.453592 7_4:-51756448 None:intergenic
CAACGCACAGATTTCTATGA+AGG 0.458953 7_4:+51758578 Msa1161550:CDS
GTTGAAGTTGGTGTTGCTGT+TGG 0.460880 7_4:-51756746 None:intergenic
GAAGCTGCTGATAAACTTGA+TGG 0.462581 7_4:+51756974 Msa1161550:CDS
GATTCCACTGATTGCTGCCC+TGG 0.462886 7_4:+51758969 Msa1161550:CDS
ACTGGTGCCAAGATGAGAAC+AGG 0.463603 7_4:+51757984 Msa1161550:CDS
GAGAAAATCTCAGCCACCAC+AGG 0.468845 7_4:-51757563 None:intergenic
TGACATGCATGTCATAATTG+AGG 0.472656 7_4:+51758625 Msa1161550:CDS
TTTCTTCTCTACAAAGAGCT+TGG 0.477727 7_4:+51757058 Msa1161550:CDS
CCCAGAGTTTAAGCGAAAGT+TGG 0.480762 7_4:+51758867 Msa1161550:CDS
TTCTCTACAAAGAGCTTGGA+AGG 0.481464 7_4:+51757062 Msa1161550:CDS
CAGCCAAGAGCTCAGACACC+AGG 0.485992 7_4:-51758987 None:intergenic
ACTTGTGGTATGATTGGTTG+TGG 0.487486 7_4:-51756433 None:intergenic
GTTAATCTCAGTGTTGAAAA+GGG 0.488825 7_4:-51756858 None:intergenic
TCAACAAAGATCTGTCTAAG+AGG 0.488967 7_4:-51756998 None:intergenic
AGGGATGAAGCTAGGCATGC+AGG 0.489165 7_4:+51757596 Msa1161550:CDS
CTGATGAAACCAATTGAGTC+AGG 0.490154 7_4:+51759015 Msa1161550:CDS
AGCCACAATTTCTCAATGAC+TGG 0.497869 7_4:+51758041 Msa1161550:CDS
ACATTACAGTAGGGATCAAA+AGG 0.504598 7_4:-51759104 None:intergenic
TAGATTTCCCCGAGTTTGAA+CGG 0.508881 7_4:+51759043 Msa1161550:CDS
ATGAGTTATTTATCAAGAGA+TGG 0.509659 7_4:+51759269 Msa1161550:three_prime_UTR
TTCAAACTCGGGGAAATCTA+CGG 0.515786 7_4:-51759040 None:intergenic
TTCCAGTCATTGAGAAATTG+TGG 0.534558 7_4:-51758043 None:intergenic
AATGTTTCCACACTGTTTCG+TGG 0.538247 7_4:-51759154 None:intergenic
TCTGGTTTATCACCACCATC+CGG 0.544659 7_4:-51758891 None:intergenic
AACTAATAAGTATCTCATCA+TGG 0.547742 7_4:-51759179 None:intergenic
ACTCTTATATTCCAATTGGA+AGG 0.552522 7_4:+51759302 Msa1161550:three_prime_UTR
TAAGCGAAAGTTGGACCGGA+TGG 0.558726 7_4:+51758876 Msa1161550:CDS
AGTTTAAGCGAAAGTTGGAC+CGG 0.563653 7_4:+51758872 Msa1161550:CDS
GTAGAATCTTGGTGTCAAAA+GGG 0.566760 7_4:-51756810 None:intergenic
GGGATGAAGCTAGGCATGCA+GGG 0.572923 7_4:+51757597 Msa1161550:CDS
AATCTCAGCCACCACAGGGT+TGG 0.573147 7_4:-51757558 None:intergenic
CTCAAGATGAACATTACAGT+AGG 0.588589 7_4:-51759114 None:intergenic
TCTTTGTTGAGTTTCTTGAG+AGG 0.592113 7_4:+51757011 Msa1161550:CDS
AGCCAAGAGCTCAGACACCA+GGG 0.597779 7_4:-51758986 None:intergenic
TGCCAAGATGAGAACAGGCA+TGG 0.599459 7_4:+51757989 Msa1161550:CDS
ACAATTTCTCAATGACTGGA+AGG 0.599992 7_4:+51758045 Msa1161550:CDS
GATTTCCCCGAGTTTGAACG+GGG 0.602852 7_4:+51759045 Msa1161550:CDS
CAACAAAGATCTGTCTAAGA+GGG 0.606400 7_4:-51756997 None:intergenic
GCGAAAGTTGGACCGGATGG+TGG 0.607374 7_4:+51758879 Msa1161550:CDS
TTGACAATCATTCAGATACA+TGG 0.607400 7_4:-51758558 None:intergenic
TGATGTCTAGGGATGAAGCT+AGG 0.613465 7_4:+51757588 Msa1161550:CDS
CCAATTGGAATATAAGAGTG+AGG 0.629752 7_4:-51759298 None:intergenic
ATGGGATAACATTGGTACTG+AGG 0.630813 7_4:-51757944 None:intergenic
GGACTTGGGATTCTTGACAA+AGG 0.631481 7_4:+51757811 Msa1161550:CDS
ATGTTGTTGATGAGAACTTG+TGG 0.632335 7_4:-51756403 None:intergenic
GACACCAGGGCAGCAATCAG+TGG 0.632610 7_4:-51758973 None:intergenic
TCAAGATGAACATTACAGTA+GGG 0.638985 7_4:-51759113 None:intergenic
TCTCAACATCAAGTACAGCT+GGG 0.645846 7_4:-51758843 None:intergenic
TCTACAAAGAGCTTGGAAGG+AGG 0.650294 7_4:+51757065 Msa1161550:CDS
AGAAAATCTCAGCCACCACA+GGG 0.658199 7_4:-51757562 None:intergenic
GCAGAAAACCAACCCTGTGG+TGG 0.678370 7_4:+51757550 Msa1161550:intron
ACTGCTGCCACGAAACAGTG+TGG 0.700205 7_4:+51759147 Msa1161550:three_prime_UTR
ATGACTGGAAGGCTAAGTTG+TGG 0.703656 7_4:+51758056 Msa1161550:CDS
GTTAATTGAAACATGACACG+TGG 0.755014 7_4:-51756474 None:intergenic
AGACAAACCGAACAACTGCG+AGG 0.761394 7_4:+51758815 Msa1161550:intron
ATTTCCCCGAGTTTGAACGG+GGG 0.763129 7_4:+51759046 Msa1161550:CDS
ATGGCAGAAAACCAACCCTG+TGG 0.808273 7_4:+51757547 Msa1161550:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGAAATATTAATAATTTC+AGG + chr7_4:51757253-51757272 Msa1161550:intron 10.0%
!! TTGAAATATTAATAATTTCA+GGG + chr7_4:51757254-51757273 Msa1161550:intron 10.0%
!!! AAGCTAATAAATTTTGAAAT+AGG + chr7_4:51757193-51757212 Msa1161550:intron 15.0%
!!! TTTCATAATTTTATTCAGAT+AGG + chr7_4:51759404-51759423 Msa1161550:three_prime_UTR 15.0%
!! ATTGTAAATTTGCAATTTCA+AGG + chr7_4:51757225-51757244 Msa1161550:intron 20.0%
!! TTGTAAATTTGCAATTTCAA+GGG + chr7_4:51757226-51757245 Msa1161550:intron 20.0%
!! AAAAGAATATACGTTAGTTA+CGG + chr7_4:51757696-51757715 Msa1161550:intron 20.0%
!!! TATTCTTTTGATTTATATGC+AGG + chr7_4:51757750-51757769 Msa1161550:intron 20.0%
!! GTAGCATAGAAAATAAATTT+GGG - chr7_4:51757860-51757879 None:intergenic 20.0%
!! TGTAGCATAGAAAATAAATT+TGG - chr7_4:51757861-51757880 None:intergenic 20.0%
!!! TTCTCAAAGTACTTAAAAAT+GGG - chr7_4:51757965-51757984 None:intergenic 20.0%
!! TTTCAACTTAAGAAACTTAA+AGG - chr7_4:51758141-51758160 None:intergenic 20.0%
!!! TTGATAACTATGTTTAAGTA+GGG - chr7_4:51758515-51758534 None:intergenic 20.0%
!!! TTTGATAACTATGTTTAAGT+AGG - chr7_4:51758516-51758535 None:intergenic 20.0%
! TTAACGTTCAAAGATTTCAT+TGG + chr7_4:51756492-51756511 Msa1161550:five_prime_UTR 25.0%
!!! AAAGTTTTTTGCTCCAATTA+TGG + chr7_4:51756619-51756638 Msa1161550:exon 25.0%
!!! TTTGGTGTGAATTTTGAAAT+TGG - chr7_4:51756668-51756687 None:intergenic 25.0%
!! ACAATCAAACTCATTTTGTT+AGG + chr7_4:51756936-51756955 Msa1161550:CDS 25.0%
! AAATCATAGATTTAGCAACT+TGG + chr7_4:51757164-51757183 Msa1161550:intron 25.0%
!!! CAGTTCTTTGAACTTTTTTT+TGG + chr7_4:51757313-51757332 Msa1161550:intron 25.0%
!! TATATGCAGGTTTTTGAATA+AGG + chr7_4:51757763-51757782 Msa1161550:intron 25.0%
!! ATATGCAGGTTTTTGAATAA+GGG + chr7_4:51757764-51757783 Msa1161550:intron 25.0%
! ACATATTTGTCTGAGAAAAT+TGG + chr7_4:51757878-51757897 Msa1161550:CDS 25.0%
! ACTTAAAAATGGGATAACAT+TGG - chr7_4:51757955-51757974 None:intergenic 25.0%
!! GTTCTCAAAGTACTTAAAAA+TGG - chr7_4:51757966-51757985 None:intergenic 25.0%
!!! TTTTTAAGTACTTTGAGAAC+TGG + chr7_4:51757966-51757985 Msa1161550:CDS 25.0%
! TCTCTGTCAAATTAAAGTAA+TGG + chr7_4:51758676-51758695 Msa1161550:intron 25.0%
! AGTTACTGTTATAAACACTT+AGG + chr7_4:51758706-51758725 Msa1161550:intron 25.0%
! AACTAATAAGTATCTCATCA+TGG - chr7_4:51759182-51759201 None:intergenic 25.0%
! ATGAGTTATTTATCAAGAGA+TGG + chr7_4:51759269-51759288 Msa1161550:three_prime_UTR 25.0%
! GTTGTTAAACACAAGTAAAT+TGG - chr7_4:51759379-51759398 None:intergenic 25.0%
! TTGTTGTATGTTTCTACTTG+TGG - chr7_4:51756451-51756470 None:intergenic 30.0%
TTGGAGCAAAAAACTTTGAT+GGG - chr7_4:51756616-51756635 None:intergenic 30.0%
ATTGGAGCAAAAAACTTTGA+TGG - chr7_4:51756617-51756636 None:intergenic 30.0%
TATGATGAAACTGTTCTTCT+AGG - chr7_4:51756704-51756723 None:intergenic 30.0%
AAATCAGTTGTGTAGAATCT+TGG - chr7_4:51756824-51756843 None:intergenic 30.0%
!! CACAACTGATTTTGATGAAA+TGG + chr7_4:51756832-51756851 Msa1161550:CDS 30.0%
! GTTAATCTCAGTGTTGAAAA+GGG - chr7_4:51756861-51756880 None:intergenic 30.0%
! TGTTAATCTCAGTGTTGAAA+AGG - chr7_4:51756862-51756881 None:intergenic 30.0%
CTTCAAACTCATCTTCATTA+AGG - chr7_4:51756889-51756908 None:intergenic 30.0%
! AACTCATTTTGTTAGGAACA+AGG + chr7_4:51756943-51756962 Msa1161550:CDS 30.0%
GCTAAATTGAATGCTGAATA+AGG - chr7_4:51757128-51757147 None:intergenic 30.0%
TTTGGTCTGAATAGTATGTT+TGG + chr7_4:51757331-51757350 Msa1161550:intron 30.0%
TTGGTCTGAATAGTATGTTT+GGG + chr7_4:51757332-51757351 Msa1161550:intron 30.0%
TCATTGTCTGATATATTGCA+TGG + chr7_4:51757516-51757535 Msa1161550:intron 30.0%
CATTGTCTGATATATTGCAT+GGG + chr7_4:51757517-51757536 Msa1161550:intron 30.0%
ATATTGCATGGGATTTGAAA+TGG + chr7_4:51757528-51757547 Msa1161550:intron 30.0%
! TATAGACAAGTAAAAGCACA+AGG - chr7_4:51757633-51757652 None:intergenic 30.0%
GGGTTTATCTGATTTCAATT+TGG + chr7_4:51757784-51757803 Msa1161550:CDS 30.0%
ATCTGATTTCAATTTGGCAT+TGG + chr7_4:51757790-51757809 Msa1161550:CDS 30.0%
! TTGTTTGAGATGTCTGTATA+TGG - chr7_4:51757921-51757940 None:intergenic 30.0%
CAAGAAAAATGTGATCTCTT+TGG - chr7_4:51758453-51758472 None:intergenic 30.0%
TAATGACCACAAACTCATAA+TGG - chr7_4:51758480-51758499 None:intergenic 30.0%
AGTTATCAAATTTGTGTTGC+AGG + chr7_4:51758526-51758545 Msa1161550:intron 30.0%
TTGACAATCATTCAGATACA+TGG - chr7_4:51758561-51758580 None:intergenic 30.0%
ACAGATTTCTATGAAGGAAT+TGG + chr7_4:51758584-51758603 Msa1161550:CDS 30.0%
! AGTTACTCAAGCTTCATTTT+GGG + chr7_4:51758782-51758801 Msa1161550:intron 30.0%
TCAAGATGAACATTACAGTA+GGG - chr7_4:51759116-51759135 None:intergenic 30.0%
ACTCTTATATTCCAATTGGA+AGG + chr7_4:51759302-51759321 Msa1161550:three_prime_UTR 30.0%
!!! TGTTTCTTAGCTGTTGATTT+TGG + chr7_4:51759348-51759367 Msa1161550:three_prime_UTR 30.0%
! TGGCTTTCTTTTGCTCTTAT+TGG - chr7_4:51756386-51756405 None:intergenic 35.0%
! ATGTTGTTGATGAGAACTTG+TGG - chr7_4:51756406-51756425 None:intergenic 35.0%
GTTTCTACTTGTGGTATGAT+TGG - chr7_4:51756442-51756461 None:intergenic 35.0%
GTTAATTGAAACATGACACG+TGG - chr7_4:51756477-51756496 None:intergenic 35.0%
!!! TTGCTTGGTTTTGTTGAAGT+TGG - chr7_4:51756761-51756780 None:intergenic 35.0%
!!! GTTTTGTTTGGTTTCTTGCT+TGG - chr7_4:51756776-51756795 None:intergenic 35.0%
!!! TCTTTGATGGCAGTTTTGTT+TGG - chr7_4:51756788-51756807 None:intergenic 35.0%
TGTCAAAAGGGTTTCTTTGA+TGG - chr7_4:51756801-51756820 None:intergenic 35.0%
!! GTAGAATCTTGGTGTCAAAA+GGG - chr7_4:51756813-51756832 None:intergenic 35.0%
!! TGTAGAATCTTGGTGTCAAA+AGG - chr7_4:51756814-51756833 None:intergenic 35.0%
TGTTAGGAACAAGGAGTTTA+AGG + chr7_4:51756952-51756971 Msa1161550:CDS 35.0%
CAACAAAGATCTGTCTAAGA+GGG - chr7_4:51757000-51757019 None:intergenic 35.0%
TCAACAAAGATCTGTCTAAG+AGG - chr7_4:51757001-51757020 None:intergenic 35.0%
TCTTTGTTGAGTTTCTTGAG+AGG + chr7_4:51757011-51757030 Msa1161550:CDS 35.0%
TTTCTTCTCTACAAAGAGCT+TGG + chr7_4:51757058-51757077 Msa1161550:CDS 35.0%
TGATTGCAACTCTAAGTACT+AGG + chr7_4:51757394-51757413 Msa1161550:intron 35.0%
AACTCTAAGTACTAGGACTT+TGG + chr7_4:51757401-51757420 Msa1161550:intron 35.0%
! AGATTTTCTCTCTGATGTCT+AGG + chr7_4:51757576-51757595 Msa1161550:CDS 35.0%
! GATTTTCTCTCTGATGTCTA+GGG + chr7_4:51757577-51757596 Msa1161550:CDS 35.0%
! TTTCAATTTGGCATTGGACT+TGG + chr7_4:51757796-51757815 Msa1161550:CDS 35.0%
! TTCAATTTGGCATTGGACTT+GGG + chr7_4:51757797-51757816 Msa1161550:CDS 35.0%
TGTCTGAGAAAATTGGATAC+TGG + chr7_4:51757885-51757904 Msa1161550:CDS 35.0%
TTCCAGTCATTGAGAAATTG+TGG - chr7_4:51758046-51758065 None:intergenic 35.0%
ACAATTTCTCAATGACTGGA+AGG + chr7_4:51758045-51758064 Msa1161550:CDS 35.0%
ATATGTAACTCAGCACCAAT+CGG - chr7_4:51758179-51758198 None:intergenic 35.0%
GTAAATCTGATTCTGCATGT+TGG - chr7_4:51758407-51758426 None:intergenic 35.0%
ATGCAGAATCAGATTTACCT+TGG + chr7_4:51758409-51758428 Msa1161550:intron 35.0%
AAAAATGTGATCTCTTTGGC+TGG - chr7_4:51758449-51758468 None:intergenic 35.0%
TGTCTTCCATTATGAGTTTG+TGG + chr7_4:51758471-51758490 Msa1161550:intron 35.0%
TGACATGCATGTCATAATTG+AGG + chr7_4:51758625-51758644 Msa1161550:CDS 35.0%
! CAGTTACTCAAGCTTCATTT+TGG + chr7_4:51758781-51758800 Msa1161550:intron 35.0%
! AACCAGAAGATTCTTGCTAT+TGG + chr7_4:51758907-51758926 Msa1161550:CDS 35.0%
CAGTAGTGAAGAACTTTAAG+AGG + chr7_4:51758947-51758966 Msa1161550:CDS 35.0%
GTAGGGATCAAAAGGAAATA+AGG - chr7_4:51759099-51759118 None:intergenic 35.0%
ACATTACAGTAGGGATCAAA+AGG - chr7_4:51759107-51759126 None:intergenic 35.0%
CTCAAGATGAACATTACAGT+AGG - chr7_4:51759117-51759136 None:intergenic 35.0%
CCAATTGGAATATAAGAGTG+AGG - chr7_4:51759301-51759320 None:intergenic 35.0%
CCTCACTCTTATATTCCAAT+TGG + chr7_4:51759298-51759317 Msa1161550:three_prime_UTR 35.0%
! ACTTGTGGTATGATTGGTTG+TGG - chr7_4:51756436-51756455 None:intergenic 40.0%
TCCAATTATGGCAGCAGAAA+TGG + chr7_4:51756631-51756650 Msa1161550:exon 40.0%
! CTAGGAATGTTGCTGAGTTT+TGG - chr7_4:51756686-51756705 None:intergenic 40.0%
TGGAGTAGCAGACATTCTTA+TGG - chr7_4:51756729-51756748 None:intergenic 40.0%
! TGAGTTTGAAGCTTTGCTTC+AGG + chr7_4:51756898-51756917 Msa1161550:CDS 40.0%
GAAGCTGCTGATAAACTTGA+TGG + chr7_4:51756974-51756993 Msa1161550:CDS 40.0%
TCTTGTACTGCTGAATTCTC+TGG + chr7_4:51757034-51757053 Msa1161550:CDS 40.0%
TTCTCTACAAAGAGCTTGGA+AGG + chr7_4:51757062-51757081 Msa1161550:CDS 40.0%
ATTGAGAATCATGCAACGCA+TGG + chr7_4:51757661-51757680 Msa1161550:intron 40.0%
TTGAGAATCATGCAACGCAT+GGG + chr7_4:51757662-51757681 Msa1161550:intron 40.0%
ATGGGATAACATTGGTACTG+AGG - chr7_4:51757947-51757966 None:intergenic 40.0%
AGCCACAATTTCTCAATGAC+TGG + chr7_4:51758041-51758060 Msa1161550:CDS 40.0%
ACCTTAACTGAGAATGCACA+TGG + chr7_4:51758209-51758228 Msa1161550:intron 40.0%
TCCATGTGCATTCTCAGTTA+AGG - chr7_4:51758213-51758232 None:intergenic 40.0%
CTATGTAGCACCAACACTTA+AGG + chr7_4:51758240-51758259 Msa1161550:intron 40.0%
ATGCCTTCAACCTTAAGTGT+TGG - chr7_4:51758253-51758272 None:intergenic 40.0%
TTGAATCTAACCACACGTGT+CGG - chr7_4:51758302-51758321 None:intergenic 40.0%
CAACGCACAGATTTCTATGA+AGG + chr7_4:51758578-51758597 Msa1161550:CDS 40.0%
TCTCAACATCAAGTACAGCT+GGG - chr7_4:51758846-51758865 None:intergenic 40.0%
TTCTCAACATCAAGTACAGC+TGG - chr7_4:51758847-51758866 None:intergenic 40.0%
CCAACTTTCGCTTAAACTCT+GGG - chr7_4:51758870-51758889 None:intergenic 40.0%
TCCAACTTTCGCTTAAACTC+TGG - chr7_4:51758871-51758890 None:intergenic 40.0%
AGTTTAAGCGAAAGTTGGAC+CGG + chr7_4:51758872-51758891 Msa1161550:CDS 40.0%
CACCAATAGCAAGAATCTTC+TGG - chr7_4:51758912-51758931 None:intergenic 40.0%
CTGATGAAACCAATTGAGTC+AGG + chr7_4:51759015-51759034 Msa1161550:CDS 40.0%
TTCAAACTCGGGGAAATCTA+CGG - chr7_4:51759043-51759062 None:intergenic 40.0%
TAGATTTCCCCGAGTTTGAA+CGG + chr7_4:51759043-51759062 Msa1161550:CDS 40.0%
AATGTTTCCACACTGTTTCG+TGG - chr7_4:51759157-51759176 None:intergenic 40.0%
GCCATTTCTGCTGCCATAAT+TGG - chr7_4:51756635-51756654 None:intergenic 45.0%
!! GTTGAAGTTGGTGTTGCTGT+TGG - chr7_4:51756749-51756768 None:intergenic 45.0%
TCTACAAAGAGCTTGGAAGG+AGG + chr7_4:51757065-51757084 Msa1161550:CDS 45.0%
TTGGAAGGAGGCTTAAGGTT+TGG + chr7_4:51757077-51757096 Msa1161550:intron 45.0%
AGAAAATCTCAGCCACCACA+GGG - chr7_4:51757565-51757584 None:intergenic 45.0%
TGATGTCTAGGGATGAAGCT+AGG + chr7_4:51757588-51757607 Msa1161550:CDS 45.0%
TGAGAATCATGCAACGCATG+GGG + chr7_4:51757663-51757682 Msa1161550:intron 45.0%
GGACTTGGGATTCTTGACAA+AGG + chr7_4:51757811-51757830 Msa1161550:CDS 45.0%
ATGACTGGAAGGCTAAGTTG+TGG + chr7_4:51758056-51758075 Msa1161550:CDS 45.0%
GTCTCGCTTCTTCTGTCTAT+CGG + chr7_4:51758078-51758097 Msa1161550:CDS 45.0%
CCAATCGGAACTAGCTATTG+AGG - chr7_4:51758164-51758183 None:intergenic 45.0%
CCTCAATAGCTAGTTCCGAT+TGG + chr7_4:51758161-51758180 Msa1161550:intron 45.0%
GCACCAACACTTAAGGTTGA+AGG + chr7_4:51758247-51758266 Msa1161550:intron 45.0%
TACTTGTTCCGTGTCTGTGT+TGG + chr7_4:51758345-51758364 Msa1161550:intron 45.0%
ACAACCAACCAACACAGACA+CGG - chr7_4:51758356-51758375 None:intergenic 45.0%
!! TCTGTGTTGGTTGGTTGTGT+CGG + chr7_4:51758358-51758377 Msa1161550:intron 45.0%
TGGCATACTAAGGAATGCCA+AGG - chr7_4:51758429-51758448 None:intergenic 45.0%
TCTCTTTGGCTGGCATACTA+AGG - chr7_4:51758439-51758458 None:intergenic 45.0%
GGAAAATCCTCGCAGTTGTT+CGG - chr7_4:51758825-51758844 None:intergenic 45.0%
CCCAGAGTTTAAGCGAAAGT+TGG + chr7_4:51758867-51758886 Msa1161550:CDS 45.0%
! TCTGGTTTATCACCACCATC+CGG - chr7_4:51758894-51758913 None:intergenic 45.0%
TCTACGGATCCTGACTCAAT+TGG - chr7_4:51759027-51759046 None:intergenic 45.0%
AGATTTCCCCGAGTTTGAAC+GGG + chr7_4:51759044-51759063 Msa1161550:CDS 45.0%
TGCTAGAGAGACCTTCCAAT+TGG - chr7_4:51759316-51759335 None:intergenic 45.0%
AGAGCTTGGAAGGAGGCTTA+AGG + chr7_4:51757072-51757091 Msa1161550:CDS 50.0%
ATGGCAGAAAACCAACCCTG+TGG + chr7_4:51757547-51757566 Msa1161550:intron 50.0%
GAGAAAATCTCAGCCACCAC+AGG - chr7_4:51757566-51757585 None:intergenic 50.0%
! ACTGGTGCCAAGATGAGAAC+AGG + chr7_4:51757984-51758003 Msa1161550:CDS 50.0%
TGCCAAGATGAGAACAGGCA+TGG + chr7_4:51757989-51758008 Msa1161550:CDS 50.0%
CTCCATGCCTGTTCTCATCT+TGG - chr7_4:51757994-51758013 None:intergenic 50.0%
! TGTTCCGTGTCTGTGTTGGT+TGG + chr7_4:51758349-51758368 Msa1161550:intron 50.0%
AGACAAACCGAACAACTGCG+AGG + chr7_4:51758815-51758834 Msa1161550:intron 50.0%
TAAGCGAAAGTTGGACCGGA+TGG + chr7_4:51758876-51758895 Msa1161550:CDS 50.0%
GATTTCCCCGAGTTTGAACG+GGG + chr7_4:51759045-51759064 Msa1161550:CDS 50.0%
ATTTCCCCGAGTTTGAACGG+GGG + chr7_4:51759046-51759065 Msa1161550:CDS 50.0%
GCAGAAAACCAACCCTGTGG+TGG + chr7_4:51757550-51757569 Msa1161550:intron 55.0%
AATCTCAGCCACCACAGGGT+TGG - chr7_4:51757561-51757580 None:intergenic 55.0%
AGGGATGAAGCTAGGCATGC+AGG + chr7_4:51757596-51757615 Msa1161550:CDS 55.0%
GGGATGAAGCTAGGCATGCA+GGG + chr7_4:51757597-51757616 Msa1161550:CDS 55.0%
GAAGCTAGGCATGCAGGGTA+AGG + chr7_4:51757602-51757621 Msa1161550:intron 55.0%
CTATACGACACCGACACGTG+TGG + chr7_4:51758289-51758308 Msa1161550:intron 55.0%
! GATTCCACTGATTGCTGCCC+TGG + chr7_4:51758969-51758988 Msa1161550:CDS 55.0%
AGCCAAGAGCTCAGACACCA+GGG - chr7_4:51758989-51759008 None:intergenic 55.0%
ACAAGCCCCCGTTCAAACTC+GGG - chr7_4:51759054-51759073 None:intergenic 55.0%
CACAAGCCCCCGTTCAAACT+CGG - chr7_4:51759055-51759074 None:intergenic 55.0%
ACTGCTGCCACGAAACAGTG+TGG + chr7_4:51759147-51759166 Msa1161550:three_prime_UTR 55.0%
GCGAAAGTTGGACCGGATGG+TGG + chr7_4:51758879-51758898 Msa1161550:CDS 60.0%
GACACCAGGGCAGCAATCAG+TGG - chr7_4:51758976-51758995 None:intergenic 60.0%
TGCCCTGGTGTCTGAGCTCT+TGG + chr7_4:51758984-51759003 Msa1161550:CDS 60.0%
CAGCCAAGAGCTCAGACACC+AGG - chr7_4:51758990-51759009 None:intergenic 60.0%
CAAGCCCCCGTTCAAACTCG+GGG - chr7_4:51759053-51759072 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51756362 51759439 51756362 ID=Msa1161550;Name=Msa1161550
chr7_4 mRNA 51756362 51759439 51756362 ID=Msa1161550-mRNA-1;Parent=Msa1161550;Name=Msa1161550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=276|1|1|1|1|1|5|359|403
chr7_4 exon 51756362 51757093 51756362 ID=Msa1161550-mRNA-1:exon:14708;Parent=Msa1161550-mRNA-1
chr7_4 exon 51757554 51757618 51757554 ID=Msa1161550-mRNA-1:exon:14709;Parent=Msa1161550-mRNA-1
chr7_4 exon 51757772 51758099 51757772 ID=Msa1161550-mRNA-1:exon:14710;Parent=Msa1161550-mRNA-1
chr7_4 exon 51758548 51758646 51758548 ID=Msa1161550-mRNA-1:exon:14711;Parent=Msa1161550-mRNA-1
chr7_4 exon 51758817 51759439 51758817 ID=Msa1161550-mRNA-1:exon:14712;Parent=Msa1161550-mRNA-1
chr7_4 five_prime_UTR 51756362 51756637 51756362 ID=Msa1161550-mRNA-1:five_prime_utr;Parent=Msa1161550-mRNA-1
chr7_4 CDS 51756638 51757093 51756638 ID=Msa1161550-mRNA-1:cds;Parent=Msa1161550-mRNA-1
chr7_4 CDS 51757554 51757618 51757554 ID=Msa1161550-mRNA-1:cds;Parent=Msa1161550-mRNA-1
chr7_4 CDS 51757772 51758099 51757772 ID=Msa1161550-mRNA-1:cds;Parent=Msa1161550-mRNA-1
chr7_4 CDS 51758548 51758646 51758548 ID=Msa1161550-mRNA-1:cds;Parent=Msa1161550-mRNA-1
chr7_4 CDS 51758817 51759080 51758817 ID=Msa1161550-mRNA-1:cds;Parent=Msa1161550-mRNA-1
chr7_4 three_prime_UTR 51759081 51759439 51759081 ID=Msa1161550-mRNA-1:three_prime_utr;Parent=Msa1161550-mRNA-1
Gene Sequence

>Msa1161550

ATGGCAGCAGAAATGGCTCTTGTGAAACCAATTTCAAAATTCACACCAAAACTCAGCAACATTCCTAGAAGAACAGTTTCATCATATTCCATAAGAATGTCTGCTACTCCAACAGCAACACCAACTTCAACAAAACCAAGCAAGAAACCAAACAAAACTGCCATCAAAGAAACCCTTTTGACACCAAGATTCTACACAACTGATTTTGATGAAATGGAGACCCTTTTCAACACTGAGATTAACAAGAACCTTAATGAAGATGAGTTTGAAGCTTTGCTTCAGGAATTCAAAACTGATTACAATCAAACTCATTTTGTTAGGAACAAGGAGTTTAAGGAAGCTGCTGATAAACTTGATGGCCCTCTTAGACAGATCTTTGTTGAGTTTCTTGAGAGGTCTTGTACTGCTGAATTCTCTGGTTTTCTTCTCTACAAAGAGCTTGGAAGGAGGCTTAAGAAAACCAACCCTGTGGTGGCTGAGATTTTCTCTCTGATGTCTAGGGATGAAGCTAGGCATGCAGGGTTTTTGAATAAGGGTTTATCTGATTTCAATTTGGCATTGGACTTGGGATTCTTGACAAAGGCTAGAAAGTACACATTTTTCAAGCCCAAATTTATTTTCTATGCTACATATTTGTCTGAGAAAATTGGATACTGGAGATACATAACCATATACAGACATCTCAAACAAAATCCTCAGTACCAATGTTATCCCATTTTTAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGGCATGGAGATTTCTTCTCTGCTTTGATGAAAGCACAGCCACAATTTCTCAATGACTGGAAGGCTAAGTTGTGGTCTCGCTTCTTCTGTCTATCGGTTTATGTCACCATGTATCTGAATGATTGTCAACGCACAGATTTCTATGAAGGAATTGGACTTAACACAAAAGAGTTTGACATGCATGTCATAATTGAGACAAACCGAACAACTGCGAGGATTTTCCCAGCTGTACTTGATGTTGAGAACCCAGAGTTTAAGCGAAAGTTGGACCGGATGGTGGTGATAAACCAGAAGATTCTTGCTATTGGTGAGAGTGATGACAATTCAGTAGTGAAGAACTTTAAGAGGATTCCACTGATTGCTGCCCTGGTGTCTGAGCTCTTGGCTGCGTATCTGATGAAACCAATTGAGTCAGGATCCGTAGATTTCCCCGAGTTTGAACGGGGGCTTGTGTACTAA

Protein sequence

>Msa1161550

MAAEMALVKPISKFTPKLSNIPRRTVSSYSIRMSATPTATPTSTKPSKKPNKTAIKETLLTPRFYTTDFDEMETLFNTEINKNLNEDEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKQNPQYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVVINQKILAIGESDDNSVVKNFKRIPLIAALVSELLAAYLMKPIESGSVDFPEFERGLVY*