AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0868500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868500 MtrunA17_Chr6g0457461 84.181 177 10 1 1 159 1 177 1.43e-107 304
Msa0868500 MtrunA17_Chr6g0457471 82.222 180 11 2 1 159 1 180 9.94e-105 297
Msa0868500 MtrunA17_Chr7g0215381 73.256 172 24 3 9 159 11 181 2.70e-88 255
Msa0868500 MtrunA17_Chr7g0215351 73.837 172 23 3 9 159 11 181 3.11e-88 255
Msa0868500 MtrunA17_Chr7g0215421 73.256 172 24 3 9 159 11 181 5.74e-88 254
Msa0868500 MtrunA17_Chr7g0215361 73.684 171 23 3 10 159 12 181 7.31e-88 254
Msa0868500 MtrunA17_Chr7g0215431 72.515 171 25 3 10 159 12 181 1.25e-86 251
Msa0868500 MtrunA17_Chr4g0072241 45.161 155 66 2 23 158 15 169 4.20e-47 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868500 AT1G67090.1 66.279 172 40 1 6 159 7 178 8.13e-83 242
Msa0868500 AT5G38410.1 65.909 176 41 2 2 159 4 178 9.17e-83 242
Msa0868500 AT5G38430.1 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa0868500 AT5G38430.2 65.909 176 41 2 2 159 4 178 1.30e-82 241
Msa0868500 AT5G38410.3 64.088 181 41 2 2 159 4 183 5.67e-82 240
Msa0868500 AT5G38420.1 64.773 176 43 2 2 159 4 178 4.43e-81 237
Msa0868500 AT5G38410.2 66.272 169 45 2 2 159 4 171 1.47e-80 236
Msa0868500 AT1G67090.2 67.857 84 27 0 6 89 7 90 9.62e-37 124

Find 76 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCAAACTTAGTAGGTTTC+TGG 0.166011 6_1:-2107941 None:intergenic
CTATATATAATAGTGAAATT+TGG 0.219235 6_1:-2106619 None:intergenic
GGATTGGTGGCTGAAAATTT+TGG 0.236681 6_1:-2106565 None:intergenic
AGAAAATTATAGGATAATAA+TGG 0.261019 6_1:-2108187 None:intergenic
ACCCACTATTAGAAAATTAT+AGG 0.271115 6_1:-2108197 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.291082 6_1:-2106814 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_1:-2107974 None:intergenic
CTCTTTGTAGCAATATCATT+TGG 0.320788 6_1:-2108159 None:intergenic
TTGTTGGTCTTCTTGGTGAC+TGG 0.326813 6_1:-2106807 None:intergenic
TTTGGATGTTACTTATCTAA+TGG 0.339223 6_1:-2106601 None:intergenic
AACTCATTCATCAGAATCAT+TGG 0.341056 6_1:+2107869 Msa0868500:CDS
GATACTATGACGGACGTTAC+TGG 0.345500 6_1:+2107762 Msa0868500:CDS
GAAAATTATAGGATAATAAT+GGG 0.352354 6_1:-2108186 None:intergenic
ATGATTCTGATGAATGAGTT+TGG 0.359780 6_1:-2107866 None:intergenic
TTGTGGATATTACATAATAT+TGG 0.377801 6_1:-2106525 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_1:-2107146 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_1:+2107817 Msa0868500:CDS
TTTCCCTTGGAAATTAAGAA+TGG 0.416082 6_1:+2108097 Msa0868500:three_prime_UTR
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_1:+2107788 Msa0868500:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_1:+2107187 Msa0868500:CDS
GTGCAAATATCAAACTTAGT+AGG 0.441976 6_1:-2107948 None:intergenic
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_1:-2107189 None:intergenic
TGTTGGTCTTCTTGGTGACT+GGG 0.456367 6_1:-2106806 None:intergenic
ATGTTACTTATCTAATGGTA+TGG 0.470320 6_1:-2106596 None:intergenic
GTTAGCGGAGACGCGGTTAA+CGG 0.473759 6_1:-2106742 None:intergenic
TGATTCTGATGAATGAGTTT+GGG 0.474330 6_1:-2107865 None:intergenic
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_1:-2107973 None:intergenic
ATATGTATTCGGATTTCCCT+TGG 0.481597 6_1:+2108084 Msa0868500:three_prime_UTR
AACTTGGTTGCTCCATTCAC+CGG 0.481626 6_1:+2106762 Msa0868500:CDS
GAGGACTTGAGACCGGTGAA+TGG 0.483691 6_1:-2106774 None:intergenic
TCATCCATTCTTAATTTCCA+AGG 0.487270 6_1:-2108101 None:intergenic
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_1:+2107740 Msa0868500:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_1:-2106838 None:intergenic
TTGCCATTTGTCTCTTGACT+AGG 0.506082 6_1:-2108319 None:intergenic
AACGGTGGTAACAGCGGCGG+AGG 0.513043 6_1:-2106724 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_1:-2106841 None:intergenic
CATCCATTCTTAATTTCCAA+GGG 0.526651 6_1:-2108100 None:intergenic
TAGAAGCAAAAGTTGAGTAC+TGG 0.531921 6_1:+2106668 Msa0868500:five_prime_UTR
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_1:-2107143 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_1:-2106823 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_1:+2107193 Msa0868500:CDS
TCTAATGGTATGGAATTGAA+AGG 0.540730 6_1:-2106586 None:intergenic
TGTCTCTTGACTAGGAATTG+TGG 0.547434 6_1:-2108311 None:intergenic
ATTCCTAGTCAAGAGACAAA+TGG 0.548181 6_1:+2108316 Msa0868500:three_prime_UTR
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_1:-2107190 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_1:-2107758 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_1:-2107739 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_1:+2106837 Msa0868500:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_1:-2107181 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_1:-2107188 None:intergenic
ACCAGCTGAGGACTTGAGAC+CGG 0.582207 6_1:-2106781 None:intergenic
TGGTATGGAATTGAAAGGAT+TGG 0.588953 6_1:-2106581 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_1:-2107800 None:intergenic
GAATGGAGCAACCAAGTTAG+CGG 0.594098 6_1:-2106757 None:intergenic
GTACTGGTGAACTAAGAAGA+AGG 0.602638 6_1:+2106684 Msa0868500:five_prime_UTR
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_1:+2107131 Msa0868500:intron
ACCGTTGGATTGTGTAATTG+TGG 0.604311 6_1:-2106542 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_1:+2106834 Msa0868500:CDS
CAACCAAGTTAGCGGAGACG+CGG 0.626784 6_1:-2106749 None:intergenic
TATGGAATTGAAAGGATTGG+TGG 0.630616 6_1:-2106578 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_1:+2106857 Msa0868500:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_1:-2107813 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_1:-2107751 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_1:-2107185 None:intergenic
TCCACAATTACACAATCCAA+CGG 0.644234 6_1:+2106541 Msa0868500:five_prime_UTR
GGGAAATATAGTTCTTACAA+CGG 0.648531 6_1:-2108002 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_1:-2107748 None:intergenic
GCGGTTAACGGTGGTAACAG+CGG 0.666203 6_1:-2106730 None:intergenic
GGTGACTGGGAAACCAGCTG+AGG 0.667506 6_1:-2106793 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_1:-2107970 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_1:+2107774 Msa0868500:CDS
AGCGGAGACGCGGTTAACGG+TGG 0.674421 6_1:-2106739 None:intergenic
GTTAACGGTGGTAACAGCGG+CGG 0.699396 6_1:-2106727 None:intergenic
CGTTCACCAGGATACTATGA+CGG 0.703631 6_1:+2107752 Msa0868500:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_1:+2107771 Msa0868500:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_1:+2107178 Msa0868500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACATGAAATTAAATTTTATA+CGG - chr6_1:2106920-2106939 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_1:2107463-2107482 None:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG + chr6_1:2108278-2108297 Msa0868500:three_prime_UTR 10.0%
!!! ACATGAAATTAAATTTTATA+CGG - chr6_1:2106920-2106939 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_1:2107463-2107482 None:intergenic 10.0%
!!! TTTTTTGATATTGTTAAATA+TGG + chr6_1:2108278-2108297 Msa0868500:three_prime_UTR 10.0%
!! CTATATATAATAGTGAAATT+TGG - chr6_1:2106622-2106641 None:intergenic 15.0%
!! ATGTCACAAAAAAATAAAAT+TGG + chr6_1:2107002-2107021 Msa0868500:intron 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_1:2107106-2107125 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_1:2107107-2107126 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_1:2107297-2107316 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_1:2107392-2107411 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_1:2107501-2107520 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_1:2108025-2108044 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_1:2108026-2108045 None:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG - chr6_1:2108068-2108087 None:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG + chr6_1:2108073-2108092 Msa0868500:three_prime_UTR 15.0%
!! GAAAATTATAGGATAATAAT+GGG - chr6_1:2108189-2108208 None:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG - chr6_1:2108190-2108209 None:intergenic 15.0%
!! CTATATATAATAGTGAAATT+TGG - chr6_1:2106622-2106641 None:intergenic 15.0%
!! ATGTCACAAAAAAATAAAAT+TGG + chr6_1:2107002-2107021 Msa0868500:intron 15.0%
!! ATACATAAAATTGAGTATTA+GGG - chr6_1:2107106-2107125 None:intergenic 15.0%
!! TATACATAAAATTGAGTATT+AGG - chr6_1:2107107-2107126 None:intergenic 15.0%
!! TAAGTTAAAAAGGAAAAAAA+AGG - chr6_1:2107297-2107316 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_1:2107392-2107411 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_1:2107501-2107520 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_1:2108025-2108044 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_1:2108026-2108045 None:intergenic 15.0%
!! ATATAAACCAAAAATACATT+AGG - chr6_1:2108068-2108087 None:intergenic 15.0%
!!! ATTTTTGGTTTATATGTATT+CGG + chr6_1:2108073-2108092 Msa0868500:three_prime_UTR 15.0%
!! GAAAATTATAGGATAATAAT+GGG - chr6_1:2108189-2108208 None:intergenic 15.0%
!! AGAAAATTATAGGATAATAA+TGG - chr6_1:2108190-2108209 None:intergenic 15.0%
!! TTGTGGATATTACATAATAT+TGG - chr6_1:2106528-2106547 None:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG + chr6_1:2106944-2106963 Msa0868500:intron 20.0%
!! TCATAATTTAAGTAACCTTA+AGG - chr6_1:2106962-2106981 None:intergenic 20.0%
!! TTAATTAATTGTGTCAACTT+TGG - chr6_1:2107064-2107083 None:intergenic 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_1:2107120-2107139 Msa0868500:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_1:2107307-2107326 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_1:2107503-2107522 Msa0868500:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_1:2107707-2107726 Msa0868500:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_1:2107976-2107995 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_1:2107977-2107996 None:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG + chr6_1:2108195-2108214 Msa0868500:three_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG + chr6_1:2108196-2108215 Msa0868500:three_prime_UTR 20.0%
!! TTGTGGATATTACATAATAT+TGG - chr6_1:2106528-2106547 None:intergenic 20.0%
!! TTACATATTTATGTACCTTA+AGG + chr6_1:2106944-2106963 Msa0868500:intron 20.0%
!! TCATAATTTAAGTAACCTTA+AGG - chr6_1:2106962-2106981 None:intergenic 20.0%
!! TTAATTAATTGTGTCAACTT+TGG - chr6_1:2107064-2107083 None:intergenic 20.0%
!! ATGTATAATATTTATAGGTG+TGG + chr6_1:2107120-2107139 Msa0868500:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_1:2107307-2107326 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_1:2107503-2107522 Msa0868500:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_1:2107707-2107726 Msa0868500:intron 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_1:2107976-2107995 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_1:2107977-2107996 None:intergenic 20.0%
!!! ATCCTATAATTTTCTAATAG+TGG + chr6_1:2108195-2108214 Msa0868500:three_prime_UTR 20.0%
!!! TCCTATAATTTTCTAATAGT+GGG + chr6_1:2108196-2108215 Msa0868500:three_prime_UTR 20.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG - chr6_1:2106499-2106518 None:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG - chr6_1:2106599-2106618 None:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG - chr6_1:2106604-2106623 None:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+GGG - chr6_1:2106896-2106915 None:intergenic 25.0%
! TATATGCAAAAATATGGACT+AGG - chr6_1:2106897-2106916 None:intergenic 25.0%
! ATACGGTATATGCAAAAATA+TGG - chr6_1:2106903-2106922 None:intergenic 25.0%
! GCTTCATGATAAAATTTGAT+TGG - chr6_1:2107370-2107389 None:intergenic 25.0%
!! AGATCATCCTAATGTATTTT+TGG + chr6_1:2108058-2108077 Msa0868500:three_prime_UTR 25.0%
! ACCCACTATTAGAAAATTAT+AGG - chr6_1:2108200-2108219 None:intergenic 25.0%
!!! AAGAGTTTTAGGTTTTGAAA+TGG - chr6_1:2106499-2106518 None:intergenic 25.0%
!! ATGTTACTTATCTAATGGTA+TGG - chr6_1:2106599-2106618 None:intergenic 25.0%
!! TTTGGATGTTACTTATCTAA+TGG - chr6_1:2106604-2106623 None:intergenic 25.0%
!! ATATGCAAAAATATGGACTA+GGG - chr6_1:2106896-2106915 None:intergenic 25.0%
! TATATGCAAAAATATGGACT+AGG - chr6_1:2106897-2106916 None:intergenic 25.0%
! ATACGGTATATGCAAAAATA+TGG - chr6_1:2106903-2106922 None:intergenic 25.0%
! GCTTCATGATAAAATTTGAT+TGG - chr6_1:2107370-2107389 None:intergenic 25.0%
!! AGATCATCCTAATGTATTTT+TGG + chr6_1:2108058-2108077 Msa0868500:three_prime_UTR 25.0%
! ACCCACTATTAGAAAATTAT+AGG - chr6_1:2108200-2108219 None:intergenic 25.0%
! CAAAACCTAAAACTCTTTTG+TGG + chr6_1:2106502-2106521 Msa0868500:five_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG - chr6_1:2106589-2106608 None:intergenic 30.0%
GAACTAAGAAGAAGGAAAAA+TGG + chr6_1:2106692-2106711 Msa0868500:exon 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_1:2107332-2107351 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_1:2107510-2107529 Msa0868500:intron 30.0%
TGATTCTGATGAATGAGTTT+GGG - chr6_1:2107868-2107887 None:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG - chr6_1:2107869-2107888 None:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG + chr6_1:2107869-2107888 Msa0868500:CDS 30.0%
TATCAAACTTAGTAGGTTTC+TGG - chr6_1:2107944-2107963 None:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG - chr6_1:2107951-2107970 None:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_1:2107973-2107992 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG - chr6_1:2108005-2108024 None:intergenic 30.0%
TTTCCCTTGGAAATTAAGAA+TGG + chr6_1:2108097-2108116 Msa0868500:three_prime_UTR 30.0%
CATCCATTCTTAATTTCCAA+GGG - chr6_1:2108103-2108122 None:intergenic 30.0%
TCATCCATTCTTAATTTCCA+AGG - chr6_1:2108104-2108123 None:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG - chr6_1:2108162-2108181 None:intergenic 30.0%
! CAAAACCTAAAACTCTTTTG+TGG + chr6_1:2106502-2106521 Msa0868500:five_prime_UTR 30.0%
TCTAATGGTATGGAATTGAA+AGG - chr6_1:2106589-2106608 None:intergenic 30.0%
GAACTAAGAAGAAGGAAAAA+TGG + chr6_1:2106692-2106711 Msa0868500:exon 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_1:2107332-2107351 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_1:2107510-2107529 Msa0868500:intron 30.0%
TGATTCTGATGAATGAGTTT+GGG - chr6_1:2107868-2107887 None:intergenic 30.0%
ATGATTCTGATGAATGAGTT+TGG - chr6_1:2107869-2107888 None:intergenic 30.0%
AACTCATTCATCAGAATCAT+TGG + chr6_1:2107869-2107888 Msa0868500:CDS 30.0%
TATCAAACTTAGTAGGTTTC+TGG - chr6_1:2107944-2107963 None:intergenic 30.0%
GTGCAAATATCAAACTTAGT+AGG - chr6_1:2107951-2107970 None:intergenic 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_1:2107973-2107992 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+CGG - chr6_1:2108005-2108024 None:intergenic 30.0%
TTTCCCTTGGAAATTAAGAA+TGG + chr6_1:2108097-2108116 Msa0868500:three_prime_UTR 30.0%
CATCCATTCTTAATTTCCAA+GGG - chr6_1:2108103-2108122 None:intergenic 30.0%
TCATCCATTCTTAATTTCCA+AGG - chr6_1:2108104-2108123 None:intergenic 30.0%
CTCTTTGTAGCAATATCATT+TGG - chr6_1:2108162-2108181 None:intergenic 30.0%
! ATTGGCCACAAAAGAGTTTT+AGG - chr6_1:2106510-2106529 None:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG + chr6_1:2106541-2106560 Msa0868500:five_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG - chr6_1:2106581-2106600 None:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG - chr6_1:2106584-2106603 None:intergenic 35.0%
TAGAAGCAAAAGTTGAGTAC+TGG + chr6_1:2106668-2106687 Msa0868500:five_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_1:2106817-2106836 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_1:2106826-2106845 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_1:2107213-2107232 Msa0868500:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_1:2107217-2107236 Msa0868500:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_1:2107218-2107237 Msa0868500:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_1:2107251-2107270 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_1:2107250-2107269 Msa0868500:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_1:2107576-2107595 Msa0868500:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_1:2107817-2107836 Msa0868500:CDS 35.0%
ATATGTATTCGGATTTCCCT+TGG + chr6_1:2108084-2108103 Msa0868500:three_prime_UTR 35.0%
ATTCCTAGTCAAGAGACAAA+TGG + chr6_1:2108316-2108335 Msa0868500:three_prime_UTR 35.0%
! ATTGGCCACAAAAGAGTTTT+AGG - chr6_1:2106510-2106529 None:intergenic 35.0%
TCCACAATTACACAATCCAA+CGG + chr6_1:2106541-2106560 Msa0868500:five_prime_UTR 35.0%
TATGGAATTGAAAGGATTGG+TGG - chr6_1:2106581-2106600 None:intergenic 35.0%
TGGTATGGAATTGAAAGGAT+TGG - chr6_1:2106584-2106603 None:intergenic 35.0%
TAGAAGCAAAAGTTGAGTAC+TGG + chr6_1:2106668-2106687 Msa0868500:five_prime_UTR 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_1:2106817-2106836 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_1:2106826-2106845 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_1:2107213-2107232 Msa0868500:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_1:2107217-2107236 Msa0868500:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_1:2107218-2107237 Msa0868500:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_1:2107251-2107270 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_1:2107250-2107269 Msa0868500:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_1:2107576-2107595 Msa0868500:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_1:2107817-2107836 Msa0868500:CDS 35.0%
ATATGTATTCGGATTTCCCT+TGG + chr6_1:2108084-2108103 Msa0868500:three_prime_UTR 35.0%
ACCGTTGGATTGTGTAATTG+TGG - chr6_1:2106545-2106564 None:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG - chr6_1:2106568-2106587 None:intergenic 40.0%
! GTACTGGTGAACTAAGAAGA+AGG + chr6_1:2106684-2106703 Msa0868500:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_1:2106834-2106853 Msa0868500:CDS 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_1:2107149-2107168 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_1:2107222-2107241 Msa0868500:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_1:2107525-2107544 Msa0868500:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_1:2107549-2107568 Msa0868500:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_1:2107647-2107666 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_1:2107672-2107691 Msa0868500:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_1:2107673-2107692 Msa0868500:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_1:2107677-2107696 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_1:2107816-2107835 None:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG - chr6_1:2108314-2108333 None:intergenic 40.0%
ACCGTTGGATTGTGTAATTG+TGG - chr6_1:2106545-2106564 None:intergenic 40.0%
!! GGATTGGTGGCTGAAAATTT+TGG - chr6_1:2106568-2106587 None:intergenic 40.0%
! GTACTGGTGAACTAAGAAGA+AGG + chr6_1:2106684-2106703 Msa0868500:five_prime_UTR 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_1:2106834-2106853 Msa0868500:CDS 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_1:2107149-2107168 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_1:2107222-2107241 Msa0868500:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_1:2107525-2107544 Msa0868500:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_1:2107549-2107568 Msa0868500:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_1:2107647-2107666 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_1:2107672-2107691 Msa0868500:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_1:2107673-2107692 Msa0868500:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_1:2107677-2107696 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_1:2107816-2107835 None:intergenic 40.0%
TGTCTCTTGACTAGGAATTG+TGG - chr6_1:2108314-2108333 None:intergenic 40.0%
! GGCTGAAAATTTTGGACCGT+TGG - chr6_1:2106560-2106579 None:intergenic 45.0%
GAATGGAGCAACCAAGTTAG+CGG - chr6_1:2106760-2106779 None:intergenic 45.0%
AACTTGGTTGCTCCATTCAC+CGG + chr6_1:2106762-2106781 Msa0868500:CDS 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_1:2106809-2106828 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_1:2106810-2106829 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_1:2106844-2106863 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_1:2106857-2106876 Msa0868500:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_1:2107146-2107165 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_1:2107192-2107211 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_1:2107193-2107212 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_1:2107193-2107212 Msa0868500:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_1:2107229-2107248 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_1:2107235-2107254 Msa0868500:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_1:2107604-2107623 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_1:2107623-2107642 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_1:2107664-2107683 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_1:2107754-2107773 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_1:2107752-2107771 Msa0868500:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_1:2107761-2107780 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_1:2107762-2107781 Msa0868500:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_1:2107788-2107807 Msa0868500:CDS 45.0%
! GGCTGAAAATTTTGGACCGT+TGG - chr6_1:2106560-2106579 None:intergenic 45.0%
GAATGGAGCAACCAAGTTAG+CGG - chr6_1:2106760-2106779 None:intergenic 45.0%
AACTTGGTTGCTCCATTCAC+CGG + chr6_1:2106762-2106781 Msa0868500:CDS 45.0%
!! TGTTGGTCTTCTTGGTGACT+GGG - chr6_1:2106809-2106828 None:intergenic 45.0%
!! TTGTTGGTCTTCTTGGTGAC+TGG - chr6_1:2106810-2106829 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_1:2106844-2106863 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_1:2106857-2106876 Msa0868500:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_1:2107146-2107165 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_1:2107192-2107211 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_1:2107193-2107212 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_1:2107193-2107212 Msa0868500:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_1:2107229-2107248 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_1:2107235-2107254 Msa0868500:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_1:2107604-2107623 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_1:2107623-2107642 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_1:2107664-2107683 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_1:2107754-2107773 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_1:2107752-2107771 Msa0868500:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_1:2107761-2107780 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_1:2107762-2107781 Msa0868500:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_1:2107788-2107807 Msa0868500:CDS 45.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_1:2107115-2107134 Msa0868500:intron 5.0%
!!! ATTTTATGTATAATATTTAT+AGG + chr6_1:2107115-2107134 Msa0868500:intron 5.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_1:2106837-2106856 Msa0868500:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_1:2106841-2106860 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_1:2107131-2107150 Msa0868500:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_1:2107188-2107207 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_1:2107187-2107206 Msa0868500:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_1:2107191-2107210 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_1:2107540-2107559 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_1:2107555-2107574 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_1:2107557-2107576 Msa0868500:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_1:2107564-2107583 Msa0868500:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_1:2107615-2107634 Msa0868500:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_1:2107751-2107770 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_1:2107771-2107790 Msa0868500:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_1:2107774-2107793 Msa0868500:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_1:2107803-2107822 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_1:2106837-2106856 Msa0868500:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_1:2106841-2106860 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_1:2107131-2107150 Msa0868500:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_1:2107188-2107207 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_1:2107187-2107206 Msa0868500:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_1:2107191-2107210 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_1:2107540-2107559 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_1:2107555-2107574 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_1:2107557-2107576 Msa0868500:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_1:2107564-2107583 Msa0868500:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_1:2107615-2107634 Msa0868500:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_1:2107751-2107770 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_1:2107771-2107790 Msa0868500:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_1:2107774-2107793 Msa0868500:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_1:2107803-2107822 None:intergenic 50.0%
GTTAACGGTGGTAACAGCGG+CGG - chr6_1:2106730-2106749 None:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG - chr6_1:2106733-2106752 None:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG - chr6_1:2106745-2106764 None:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG + chr6_1:2106746-2106765 Msa0868500:CDS 55.0%
CAACCAAGTTAGCGGAGACG+CGG - chr6_1:2106752-2106771 None:intergenic 55.0%
GAGGACTTGAGACCGGTGAA+TGG - chr6_1:2106777-2106796 None:intergenic 55.0%
ACCAGCTGAGGACTTGAGAC+CGG - chr6_1:2106784-2106803 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_1:2107178-2107197 Msa0868500:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_1:2107742-2107761 None:intergenic 55.0%
GTTAACGGTGGTAACAGCGG+CGG - chr6_1:2106730-2106749 None:intergenic 55.0%
GCGGTTAACGGTGGTAACAG+CGG - chr6_1:2106733-2106752 None:intergenic 55.0%
GTTAGCGGAGACGCGGTTAA+CGG - chr6_1:2106745-2106764 None:intergenic 55.0%
TAACCGCGTCTCCGCTAACT+TGG + chr6_1:2106746-2106765 Msa0868500:CDS 55.0%
CAACCAAGTTAGCGGAGACG+CGG - chr6_1:2106752-2106771 None:intergenic 55.0%
GAGGACTTGAGACCGGTGAA+TGG - chr6_1:2106777-2106796 None:intergenic 55.0%
ACCAGCTGAGGACTTGAGAC+CGG - chr6_1:2106784-2106803 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_1:2107178-2107197 Msa0868500:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_1:2107742-2107761 None:intergenic 55.0%
ACCGGTCTCAAGTCCTCAGC+TGG + chr6_1:2106780-2106799 Msa0868500:CDS 60.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_1:2106796-2106815 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_1:2107184-2107203 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_1:2107740-2107759 Msa0868500:CDS 60.0%
ACCGGTCTCAAGTCCTCAGC+TGG + chr6_1:2106780-2106799 Msa0868500:CDS 60.0%
GGTGACTGGGAAACCAGCTG+AGG - chr6_1:2106796-2106815 None:intergenic 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_1:2107184-2107203 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_1:2107740-2107759 Msa0868500:CDS 60.0%
AACGGTGGTAACAGCGGCGG+AGG - chr6_1:2106727-2106746 None:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG - chr6_1:2106742-2106761 None:intergenic 65.0%
AACGGTGGTAACAGCGGCGG+AGG - chr6_1:2106727-2106746 None:intergenic 65.0%
AGCGGAGACGCGGTTAACGG+TGG - chr6_1:2106742-2106761 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2106489 2108338 2106489 ID=Msa0868500;Name=Msa0868500
chr6_1 mRNA 2106489 2108338 2106489 ID=Msa0868500-mRNA-1;Parent=Msa0868500;Name=Msa0868500-mRNA-1;_AED=0.31;_eAED=0.31;_QI=222|0.5|0.66|1|1|1|3|383|159
chr6_1 exon 2106489 2106878 2106489 ID=Msa0868500-mRNA-1:exon:601;Parent=Msa0868500-mRNA-1
chr6_1 exon 2107137 2107217 2107137 ID=Msa0868500-mRNA-1:exon:602;Parent=Msa0868500-mRNA-1
chr6_1 exon 2107725 2108338 2107725 ID=Msa0868500-mRNA-1:exon:603;Parent=Msa0868500-mRNA-1
chr6_1 five_prime_UTR 2106489 2106710 2106489 ID=Msa0868500-mRNA-1:five_prime_utr;Parent=Msa0868500-mRNA-1
chr6_1 CDS 2106711 2106878 2106711 ID=Msa0868500-mRNA-1:cds;Parent=Msa0868500-mRNA-1
chr6_1 CDS 2107137 2107217 2107137 ID=Msa0868500-mRNA-1:cds;Parent=Msa0868500-mRNA-1
chr6_1 CDS 2107725 2107955 2107725 ID=Msa0868500-mRNA-1:cds;Parent=Msa0868500-mRNA-1
chr6_1 three_prime_UTR 2107956 2108338 2107956 ID=Msa0868500-mRNA-1:three_prime_utr;Parent=Msa0868500-mRNA-1
Gene Sequence

>Msa0868500

ATGGCTTTGATCTCCTCCGCCGCTGTTACCACCGTTAACCGCGTCTCCGCTAACTTGGTTGCTCCATTCACCGGTCTCAAGTCCTCAGCTGGTTTCCCAGTCACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAAACTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAGAAACCTACTAA

Protein sequence

>Msa0868500

MALISSAAVTTVNRVSANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPNSFIRIIGFDNVRQVQCISFIAHTPETY*