AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1190670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190670 MtrunA17_Chr8g0359811 96.495 428 11 2 1 428 1 424 0.0 834
Msa1190670 MtrunA17_Chr6g0450881 30.435 230 122 8 216 425 4 215 2.72e-23 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1190670 AT3G15520.3 62.121 462 132 7 1 425 1 456 0.0 548
Msa1190670 AT3G15520.1 62.121 462 132 7 1 425 1 456 0.0 548
Msa1190670 AT3G15520.2 74.684 316 79 1 111 425 1 316 3.78e-173 488
Msa1190670 AT3G15520.4 56.065 371 120 7 1 334 1 365 7.13e-131 382
Msa1190670 AT3G01480.1 27.249 389 242 11 62 425 59 431 1.51e-33 130
Msa1190670 AT3G01480.2 27.551 294 178 8 62 333 59 339 2.05e-21 95.5

Find 125 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGCATCCTGTTCCTTTA+TGG 0.082861 8_1:-33846933 None:intergenic
GCAAAATTCCCTGCAGTTAA+AGG 0.157758 8_1:-33848017 None:intergenic
GTTCTGCCTCTATCTGTTTA+TGG 0.176620 8_1:+33849190 Msa1190670:CDS
GCCTTCATGTTAGGGCTTGC+AGG 0.251495 8_1:-33844635 None:intergenic
GTGCATTCAACTTTAATAGA+TGG 0.257426 8_1:+33846450 Msa1190670:CDS
GTGGAAGTGGTAGTGTAAAA+AGG 0.284734 8_1:-33844248 None:intergenic
ACCTGTATGGCCTTCATGTT+AGG 0.302845 8_1:-33844644 None:intergenic
AGAGCAACTTCACCAGTTCT+AGG 0.313603 8_1:-33844599 None:intergenic
CATCGTCACATTGGCCTAAT+TGG 0.331013 8_1:-33844424 None:intergenic
ACTGAAGGAAAAGGCCTCTT+TGG 0.331824 8_1:+33846428 Msa1190670:CDS
TCGGCAACACGAGGCGGTCT+TGG 0.335245 8_1:-33849739 None:intergenic
TGCTCCCTGAGCAGGTAAAA+AGG 0.342840 8_1:+33849794 Msa1190670:three_prime_UTR
ACTGAACGGTGGAAGCAATT+AGG 0.367614 8_1:-33844505 None:intergenic
CCTCTGTTGTAGGCCGGCTT+AGG 0.375646 8_1:+33849492 Msa1190670:intron
TTCTGAGAGAATAGCTTGAT+TGG 0.376818 8_1:-33848966 None:intergenic
CCTGTTCCTTTATGGATTGA+AGG 0.378050 8_1:-33846925 None:intergenic
CAACCTGCATCTGGAAAATC+AGG 0.387643 8_1:-33849874 None:intergenic
GAACTGGTGAAGTTGCTCTT+AGG 0.391945 8_1:+33844603 Msa1190670:CDS
TGCTTCACAAAGAGCCAATT+AGG 0.403240 8_1:+33844410 Msa1190670:CDS
CACCGTTCAGTTCAGTTCCA+TGG 0.406317 8_1:+33844517 Msa1190670:CDS
GTTGAGTTTGTCATTGAGAA+AGG 0.413149 8_1:+33847439 Msa1190670:CDS
CCCTAACATGAAGGCCATAC+AGG 0.417871 8_1:+33844643 Msa1190670:CDS
CCTTCAATCCATAAAGGAAC+AGG 0.418865 8_1:+33846925 Msa1190670:CDS
CTGTTGTAGGCCGGCTTAGG+AGG 0.421036 8_1:+33849495 Msa1190670:intron
TTTACAACACAACCTGCATC+TGG 0.421240 8_1:-33849883 None:intergenic
AGATGAAAAGGATTCTATAT+TGG 0.426146 8_1:+33846389 Msa1190670:CDS
GTGATGGATGGAGCATATAA+TGG 0.428328 8_1:+33848926 Msa1190670:CDS
TTCCCCTCCATTGTTCCATA+AGG 0.429471 8_1:-33845687 None:intergenic
TTTCTCTCTTCTCCACCAAC+TGG 0.443642 8_1:-33847481 None:intergenic
ATTCCACAGAGGAAACCTTA+TGG 0.445351 8_1:+33845672 Msa1190670:CDS
TATTCAGCTCCTTTAACTGC+AGG 0.448722 8_1:+33848008 Msa1190670:CDS
CGTTCCGCAAAGCTTATTGA+AGG 0.449931 8_1:+33849716 Msa1190670:CDS
TTAGATAGCGGTAGATGAAA+AGG 0.452704 8_1:+33846377 Msa1190670:intron
TAAACAGATAGAGGCAGAAC+TGG 0.454960 8_1:-33849187 None:intergenic
AGTTCTCCTTCAATCCATAA+AGG 0.455076 8_1:+33846919 Msa1190670:CDS
CCTGTATGGCCTTCATGTTA+GGG 0.464546 8_1:-33844643 None:intergenic
TCTTACAGTGCTCCCTGAGC+AGG 0.470897 8_1:+33849786 Msa1190670:three_prime_UTR
ACCACTGGTCTTATCTAGTC+CGG 0.471155 8_1:-33848990 None:intergenic
GACTTTGTGTGGCGGAAGAA+AGG 0.481623 8_1:-33844371 None:intergenic
CAAGCTATTCTCTCAGAAAC+CGG 0.481877 8_1:+33848971 Msa1190670:CDS
TGCATTCAACTTTAATAGAT+GGG 0.484069 8_1:+33846451 Msa1190670:CDS
GACACAAAGGTTCCTAGAAC+TGG 0.487336 8_1:+33844587 Msa1190670:CDS
CCTAATCTGTTCTGTGGAAG+TGG 0.487868 8_1:-33844261 None:intergenic
GTTCTAGGAACCTTTGTGTC+CGG 0.488880 8_1:-33844584 None:intergenic
TTGGCCTTCAATAAGCTTTG+CGG 0.489836 8_1:-33849720 None:intergenic
CAATATCCAGTGTAGATTGA+AGG 0.492806 8_1:-33846970 None:intergenic
CTTAGGAGGGATATCATTTG+AGG 0.495914 8_1:+33849509 Msa1190670:CDS
TCGAATCACATGCTTGCTCT+CGG 0.496249 8_1:-33844200 None:intergenic
TAAAACAACATTAAGTGTAC+AGG 0.496441 8_1:+33849063 Msa1190670:CDS
TACAGAATCGCATTCGCAGC+GGG 0.497810 8_1:-33844557 None:intergenic
AGAACAAAACACAACCTGTA+TGG 0.501201 8_1:-33844657 None:intergenic
AAGATATTTCGTATCTGTTG+AGG 0.501205 8_1:+33845649 Msa1190670:CDS
TGTTTATGGAGCAGTTGCTA+TGG 0.502880 8_1:+33849204 Msa1190670:CDS
AGACGTACTCAACTTTCCTT+CGG 0.510289 8_1:-33849758 None:intergenic
AAAGGGTGGTGGCGAGTGAT+CGG 0.512904 8_1:-33844353 None:intergenic
GGCAGAACTAGAGACATTAC+AGG 0.514286 8_1:+33846994 Msa1190670:CDS
ACTGCTCCATAAACAGATAG+AGG 0.517132 8_1:-33849196 None:intergenic
AAATGATATCCCTCCTAAGC+CGG 0.522397 8_1:-33849505 None:intergenic
GCGAGTGATCGGAATGTTGA+AGG 0.523573 8_1:-33844342 None:intergenic
TTCAACTTTAATAGATGGGA+AGG 0.524283 8_1:+33846455 Msa1190670:CDS
ACTTTGTGTGGCGGAAGAAA+GGG 0.525426 8_1:-33844370 None:intergenic
ATGTGCAGATATACCACCAT+AGG 0.525447 8_1:+33849653 Msa1190670:intron
TCCAGCGGGCATTATTTCCA+AGG 0.533277 8_1:-33849023 None:intergenic
CAAGGGAACATTGTAACCAC+TGG 0.536338 8_1:-33849005 None:intergenic
TTCGAGAAGGTGACTTTGTG+TGG 0.538892 8_1:-33844382 None:intergenic
CCTTCATGTTAGGGCTTGCA+GGG 0.543469 8_1:-33844634 None:intergenic
AGGGGCTCAAATTGTCCAGC+GGG 0.545527 8_1:-33849037 None:intergenic
CCACTTCCACAGAACAGATT+AGG 0.545616 8_1:+33844261 Msa1190670:five_prime_UTR
GGAGGGATATCATTTGAGGA+AGG 0.545622 8_1:+33849513 Msa1190670:CDS
TCTGTATTCGCCGGACACAA+AGG 0.546228 8_1:+33844574 Msa1190670:CDS
CCCTGCAAGCCCTAACATGA+AGG 0.549248 8_1:+33844634 Msa1190670:CDS
ACCAGCGGAACTGAAGGAAA+AGG 0.552137 8_1:+33846419 Msa1190670:CDS
ACGGTGGAAGCAATTAGGAT+TGG 0.562553 8_1:-33844500 None:intergenic
ATATTGCGGCAACAGGCACC+TGG 0.563706 8_1:+33847135 Msa1190670:intron
CATATCCTTTAGGTGATGGA+TGG 0.564081 8_1:+33848914 Msa1190670:intron
GTGAAACTGTGTAATTTGAA+AGG 0.564757 8_1:-33850009 None:intergenic
TGTTGTAGGCCGGCTTAGGA+GGG 0.566790 8_1:+33849496 Msa1190670:intron
GGCTCATAACGAAGCTTCTG+AGG 0.571419 8_1:+33849225 Msa1190670:CDS
CAGTGGTTACAATGTTCCCT+TGG 0.571994 8_1:+33849006 Msa1190670:CDS
TCTGTTGCCGGGGCAATACA+CGG 0.572281 8_1:+33847167 Msa1190670:CDS
TTTGTCATTGAGAAAGGAGA+CGG 0.572532 8_1:+33847445 Msa1190670:CDS
CCAGCGGGCATTATTTCCAA+GGG 0.572993 8_1:-33849022 None:intergenic
AAGTATACCAGCGGAACTGA+AGG 0.574421 8_1:+33846413 Msa1190670:CDS
TCAATCTACACTGGATATTG+TGG 0.574665 8_1:+33846973 Msa1190670:CDS
TGTGACGATGACACGTCACT+TGG 0.575269 8_1:+33844437 Msa1190670:CDS
GAGAATATCTCTCCCTATGG+TGG 0.583172 8_1:-33849666 None:intergenic
GAGGGATATCATTTGAGGAA+GGG 0.583536 8_1:+33849514 Msa1190670:CDS
AAACCTTATGGAACAATGGA+GGG 0.584507 8_1:+33845684 Msa1190670:CDS
AGACCGCCTCGTGTTGCCGA+AGG 0.589819 8_1:+33849742 Msa1190670:CDS
GGGGAGAATATCTCTCCCTA+TGG 0.590339 8_1:-33849669 None:intergenic
GGATATTCCGTGTATTGCCC+CGG 0.591341 8_1:-33847174 None:intergenic
TGTGAACCTTCAATCTACAC+TGG 0.593107 8_1:+33846964 Msa1190670:CDS
GTTCCATAAGGTTTCCTCTG+TGG 0.593482 8_1:-33845675 None:intergenic
AACTTTCCTTCGGCAACACG+AGG 0.594186 8_1:-33849748 None:intergenic
TGCGGAACGAATGATATCCC+CGG 0.594728 8_1:-33849702 None:intergenic
CCCTTGGAAATAATGCCCGC+TGG 0.595063 8_1:+33849022 Msa1190670:CDS
TAAAGTTGAATGCACCAAAG+AGG 0.604599 8_1:-33846442 None:intergenic
ATTCAGCTCCTTTAACTGCA+GGG 0.605738 8_1:+33848009 Msa1190670:CDS
TGCGCGCCTAATCTGTTCTG+TGG 0.607064 8_1:-33844267 None:intergenic
GTGACGTGTCATCGTCACAT+TGG 0.615916 8_1:-33844433 None:intergenic
GAAACCTTATGGAACAATGG+AGG 0.616389 8_1:+33845683 Msa1190670:CDS
TTTCCTTCGGCAACACGAGG+CGG 0.622511 8_1:-33849745 None:intergenic
AGAAGACACGTAAGGAACCA+TGG 0.625125 8_1:-33844534 None:intergenic
TGTGGCGGAAGAAAGGGTGG+TGG 0.625221 8_1:-33844364 None:intergenic
GAGGAAACCTTATGGAACAA+TGG 0.627363 8_1:+33845680 Msa1190670:CDS
GGCAACAGAAAAGATAGACC+AGG 0.630813 8_1:-33847153 None:intergenic
AACCTTATGGAACAATGGAG+GGG 0.632285 8_1:+33845685 Msa1190670:CDS
GTGAAGCAGAAGATTCGAGA+AGG 0.633102 8_1:-33844395 None:intergenic
TTGTGTGGCGGAAGAAAGGG+TGG 0.634669 8_1:-33844367 None:intergenic
TGTGCAGATATACCACCATA+GGG 0.644025 8_1:+33849654 Msa1190670:intron
GGCAATACACGGAATATCCA+CGG 0.644795 8_1:+33847178 Msa1190670:CDS
GAATGCGATTCTGTATTCGC+CGG 0.647570 8_1:+33844565 Msa1190670:CDS
ATGTTGAAGGAAGAAGAGAG+AGG 0.656967 8_1:-33844329 None:intergenic
AACCATGGAACTGAACTGAA+CGG 0.659365 8_1:-33844519 None:intergenic
GCAGCGGGAGAAGACACGTA+AGG 0.664077 8_1:-33844542 None:intergenic
GAGAAGGTGACTTTGTGTGG+CGG 0.672767 8_1:-33844379 None:intergenic
CGTCACTTGGTATAACTCAG+AGG 0.681064 8_1:+33844450 Msa1190670:CDS
ATACAGAATCGCATTCGCAG+CGG 0.692269 8_1:-33844558 None:intergenic
AAGGGGCTCAAATTGTCCAG+CGG 0.695442 8_1:-33849038 None:intergenic
TATATTGGCAAGTATACCAG+CGG 0.697073 8_1:+33846404 Msa1190670:CDS
CATGGAACTGAACTGAACGG+TGG 0.719811 8_1:-33844516 None:intergenic
ACCGGACTAGATAAGACCAG+TGG 0.737652 8_1:+33848989 Msa1190670:CDS
ATCTGTTGAGGATTCCACAG+AGG 0.745433 8_1:+33845661 Msa1190670:CDS
CAAATTACACAGTTTCACCG+CGG 0.760603 8_1:+33850014 Msa1190670:three_prime_UTR
AAAGGGACACGTGTACACTG+TGG 0.764061 8_1:-33844230 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAGAAAACAAATATA+AGG - chr8_1:33849334-33849353 None:intergenic 10.0%
!!! TTATGTTTTTGTTTTTATTT+TGG + chr8_1:33849624-33849643 Msa1190670:intron 10.0%
!!! TATGTTTTTGTTTTTATTTT+GGG + chr8_1:33849625-33849644 Msa1190670:intron 10.0%
!! AATTATTCTCACAATAAATA+AGG + chr8_1:33845414-33845433 Msa1190670:intron 15.0%
!! ATTATTCTCACAATAAATAA+GGG + chr8_1:33845415-33845434 Msa1190670:intron 15.0%
!!! AATCAAAATATTGCAAATTT+TGG - chr8_1:33845513-33845532 None:intergenic 15.0%
!! AGTTTCTATAAAAAAATAGT+TGG - chr8_1:33845588-33845607 None:intergenic 15.0%
!! ATAAAAAGTTCATGATTAAT+AGG - chr8_1:33848266-33848285 None:intergenic 15.0%
!!! AAATTTCAAGTAGAAAATAT+AGG - chr8_1:33848476-33848495 None:intergenic 15.0%
!! TTTAATGTGAAACTAATATA+AGG + chr8_1:33848590-33848609 Msa1190670:intron 15.0%
!! TTAATGTGAAACTAATATAA+GGG + chr8_1:33848591-33848610 Msa1190670:intron 15.0%
!! CTTAAAAATGTATTTATAAG+TGG - chr8_1:33848855-33848874 None:intergenic 15.0%
!!! CACTTATAAATACATTTTTA+AGG + chr8_1:33848853-33848872 Msa1190670:intron 15.0%
!!! ACTTAATGTTGTTTTATAAA+GGG - chr8_1:33849059-33849078 None:intergenic 15.0%
!!! ATGTTTTTGTTTTTATTTTG+GGG + chr8_1:33849626-33849645 Msa1190670:intron 15.0%
!! TTATGTATAATAAACTTGTG+TGG + chr8_1:33844709-33844728 Msa1190670:intron 20.0%
!!! ATAGGTTACTATTTCTTTTT+GGG - chr8_1:33845082-33845101 None:intergenic 20.0%
!!! AATAGGTTACTATTTCTTTT+TGG - chr8_1:33845083-33845102 None:intergenic 20.0%
!! TAATGTTGAAAATGATCAAA+TGG + chr8_1:33845463-33845482 Msa1190670:intron 20.0%
!!! ATATTTTGATTCGCATAAAA+AGG + chr8_1:33845522-33845541 Msa1190670:intron 20.0%
!!! AAAGTATTAGAAAGAAAGTT+GGG + chr8_1:33846038-33846057 Msa1190670:intron 20.0%
!!! ATGAAAAATCACTGATTATT+AGG + chr8_1:33846082-33846101 Msa1190670:intron 20.0%
!! TACAATTAATCAAATAATCG+AGG - chr8_1:33846500-33846519 None:intergenic 20.0%
!!! TATTTTTTCTGTTAGAAAGA+AGG - chr8_1:33846538-33846557 None:intergenic 20.0%
!!! TTTGTTATATAATTCTCACA+TGG + chr8_1:33846835-33846854 Msa1190670:intron 20.0%
!!! ATTGATTCAGTCATTTTAAT+TGG - chr8_1:33847075-33847094 None:intergenic 20.0%
!! TCAATGTAACACTTATATTA+TGG + chr8_1:33847090-33847109 Msa1190670:intron 20.0%
!! AATCCATAAACATTAAGAAA+AGG + chr8_1:33847592-33847611 Msa1190670:intron 20.0%
!!! TATTTATTTTGAGATAAGCT+TGG + chr8_1:33847767-33847786 Msa1190670:intron 20.0%
!!! TTCTTTGCTAAAACTTATTT+TGG + chr8_1:33847842-33847861 Msa1190670:intron 20.0%
!!! TGTTCATTTTTTTACTTGAA+TGG + chr8_1:33848200-33848219 Msa1190670:intron 20.0%
!!! AAAATTACTTGTTTTGCTTT+TGG + chr8_1:33848333-33848352 Msa1190670:intron 20.0%
!!! AAATTACTTGTTTTGCTTTT+GGG + chr8_1:33848334-33848353 Msa1190670:intron 20.0%
!! TTTGAATAGAGAATAAAGAA+TGG + chr8_1:33848364-33848383 Msa1190670:intron 20.0%
!!! GTTGATTTTAATGATTAATG+AGG + chr8_1:33848504-33848523 Msa1190670:intron 20.0%
!!! AATTTGATTTTACCATCATT+TGG + chr8_1:33848782-33848801 Msa1190670:intron 20.0%
!!! ATTTGATTTTACCATCATTT+GGG + chr8_1:33848783-33848802 Msa1190670:intron 20.0%
!!! CTTAATGTTGTTTTATAAAG+GGG - chr8_1:33849058-33849077 None:intergenic 20.0%
!!! CACTTAATGTTGTTTTATAA+AGG - chr8_1:33849060-33849079 None:intergenic 20.0%
!! AGATAGAAGAAAAATTGATA+AGG - chr8_1:33849262-33849281 None:intergenic 20.0%
!! TCTATGATAAAAGAAATGTA+AGG + chr8_1:33849281-33849300 Msa1190670:intron 20.0%
!! CTATGATAAAAGAAATGTAA+GGG + chr8_1:33849282-33849301 Msa1190670:intron 20.0%
!!! CATGTTTTTAAAAACTAGAA+CGG + chr8_1:33849410-33849429 Msa1190670:intron 20.0%
!!! ATGTTTTTAAAAACTAGAAC+GGG + chr8_1:33849411-33849430 Msa1190670:intron 20.0%
!! CAATTGAAAAGAAAAAACAA+AGG - chr8_1:33849438-33849457 None:intergenic 20.0%
!!! TATAATCTTCTGAATCATTT+TGG + chr8_1:33849574-33849593 Msa1190670:intron 20.0%
!!! TTGAAGTTTTTTAGATTAGC+AGG - chr8_1:33845114-33845133 None:intergenic 25.0%
! ATCAAAGAAATGCATTGAAA+TGG + chr8_1:33845135-33845154 Msa1190670:intron 25.0%
! AATGGTTAATTGCAAATTGA+TGG + chr8_1:33845153-33845172 Msa1190670:intron 25.0%
! TGATTCTAAACTATAAAGCA+CGG + chr8_1:33845189-33845208 Msa1190670:intron 25.0%
! TTCAGTGTAATTATATGTGT+TGG - chr8_1:33845248-33845267 None:intergenic 25.0%
! TCTAAAAAAATTAGCTGTGT+CGG + chr8_1:33845279-33845298 Msa1190670:intron 25.0%
!!! TTTTTAGAATCTATGAAGCA+CGG - chr8_1:33845346-33845365 None:intergenic 25.0%
!! TAGATTCTAAAAATAGCCTT+TGG + chr8_1:33845353-33845372 Msa1190670:intron 25.0%
!! GTTTAATATCTGAAATCACA+TGG + chr8_1:33845766-33845785 Msa1190670:intron 25.0%
! AGATGCATTATAAGAAATAC+TGG + chr8_1:33845800-33845819 Msa1190670:intron 25.0%
! TTACCACTTTATCATATAGT+AGG - chr8_1:33845928-33845947 None:intergenic 25.0%
!!! GAAAGTATTAGAAAGAAAGT+TGG + chr8_1:33846037-33846056 Msa1190670:intron 25.0%
! CATTAATTCAATTGAACAGA+GGG - chr8_1:33846136-33846155 None:intergenic 25.0%
! TCATTAATTCAATTGAACAG+AGG - chr8_1:33846137-33846156 None:intergenic 25.0%
!!! TTCTTCCTTATTTTAGATAG+CGG + chr8_1:33846365-33846384 Msa1190670:intron 25.0%
! AGATGAAAAGGATTCTATAT+TGG + chr8_1:33846389-33846408 Msa1190670:CDS 25.0%
! TGCATTCAACTTTAATAGAT+GGG + chr8_1:33846451-33846470 Msa1190670:CDS 25.0%
! TATTCACGTTTCAACATAAT+TGG + chr8_1:33846556-33846575 Msa1190670:intron 25.0%
! GGATATGTTTATGATGATTT+CGG + chr8_1:33846577-33846596 Msa1190670:intron 25.0%
!!! TGTGTTACTTTTTTTGTTGT+AGG + chr8_1:33846794-33846813 Msa1190670:intron 25.0%
! CAAGATAGCATCATATTATT+TGG - chr8_1:33847029-33847048 None:intergenic 25.0%
! TTAATCTGATCTTGATATTG+CGG + chr8_1:33847121-33847140 Msa1190670:intron 25.0%
! ACGTCAAAATATACATTAGA+GGG - chr8_1:33847260-33847279 None:intergenic 25.0%
! TACGTCAAAATATACATTAG+AGG - chr8_1:33847261-33847280 None:intergenic 25.0%
! AAATTCAATAGTCAGAAGAA+GGG + chr8_1:33847364-33847383 Msa1190670:intron 25.0%
!!! CATCTTCGTAATTTTTTTGT+AGG + chr8_1:33847398-33847417 Msa1190670:intron 25.0%
!!! TAATTTTTTTGTAGGCTTTC+AGG + chr8_1:33847406-33847425 Msa1190670:intron 25.0%
!!! AATTTTTTTGTAGGCTTTCA+GGG + chr8_1:33847407-33847426 Msa1190670:intron 25.0%
! TAATCATAAAGGACAAGTTA+TGG - chr8_1:33847535-33847554 None:intergenic 25.0%
!! TTTATGGATTGTTTAAGACT+AGG - chr8_1:33847582-33847601 None:intergenic 25.0%
!! TTAAGAAAAGGTCCATTTTA+AGG + chr8_1:33847604-33847623 Msa1190670:intron 25.0%
!!! ACTGTTTTTCTTAATCTATC+TGG - chr8_1:33847661-33847680 None:intergenic 25.0%
!!! TGCTAAAACTTATTTTGGAA+TGG + chr8_1:33847847-33847866 Msa1190670:intron 25.0%
!!! AAAACTTATTTTGGAATGGA+TGG + chr8_1:33847851-33847870 Msa1190670:intron 25.0%
! TATCATGGTTTATCCATATT+TGG + chr8_1:33848139-33848158 Msa1190670:intron 25.0%
! TGAACATAAGTTTAAGAATG+TGG - chr8_1:33848393-33848412 None:intergenic 25.0%
! ACATTCTTAAACTTATGTTC+AGG + chr8_1:33848392-33848411 Msa1190670:intron 25.0%
! TAAAACAACATTAAGTGTAC+AGG + chr8_1:33849063-33849082 Msa1190670:CDS 25.0%
!! TCATTTTCTTATGTGTCTTT+TGG + chr8_1:33849149-33849168 Msa1190670:intron 25.0%
!! AACAAATATAAGGCTTTTAG+CGG - chr8_1:33849324-33849343 None:intergenic 25.0%
! TAATGCAAAATAAGAGTGAA+AGG + chr8_1:33849358-33849377 Msa1190670:intron 25.0%
!!! CAAATTACACTTTTTCACTA+TGG + chr8_1:33849937-33849956 Msa1190670:three_prime_UTR 25.0%
ATAATAAACTTGTGTGGTGA+AGG + chr8_1:33844715-33844734 Msa1190670:intron 30.0%
TTCCAACAAATTCTTGTGTT+GGG + chr8_1:33844912-33844931 Msa1190670:intron 30.0%
AGATTAAAAACACCAAGTCA+TGG + chr8_1:33844996-33845015 Msa1190670:intron 30.0%
GATTAAAAACACCAAGTCAT+GGG + chr8_1:33844997-33845016 Msa1190670:intron 30.0%
AAGATATGAAAAGACACCAA+AGG - chr8_1:33845372-33845391 None:intergenic 30.0%
! GTGTCTTTTCATATCTTTCT+TGG + chr8_1:33845375-33845394 Msa1190670:intron 30.0%
! ACAATAAATAAGGGTATACG+AGG + chr8_1:33845424-33845443 Msa1190670:intron 30.0%
TGTTACAATGATGCTAATTC+AGG + chr8_1:33845617-33845636 Msa1190670:intron 30.0%
AAGATATTTCGTATCTGTTG+AGG + chr8_1:33845649-33845668 Msa1190670:CDS 30.0%
!! GAACGTAAAGAAAGTTTTGA+AGG + chr8_1:33845707-33845726 Msa1190670:CDS 30.0%
TGCATTATAAGAAATACTGG+AGG + chr8_1:33845803-33845822 Msa1190670:intron 30.0%
GCATTATAAGAAATACTGGA+GGG + chr8_1:33845804-33845823 Msa1190670:intron 30.0%
ATATAGAAGATGCAAACCAT+AGG + chr8_1:33845829-33845848 Msa1190670:intron 30.0%
TATATTGCACATGAATCCTA+TGG - chr8_1:33845848-33845867 None:intergenic 30.0%
ATAGGATTCATGTGCAATAT+AGG + chr8_1:33845847-33845866 Msa1190670:intron 30.0%
AAATTTACCTGTAAACTCGA+GGG - chr8_1:33845887-33845906 None:intergenic 30.0%
AAAATTTACCTGTAAACTCG+AGG - chr8_1:33845888-33845907 None:intergenic 30.0%
AGACCTACTATATGATAAAG+TGG + chr8_1:33845922-33845941 Msa1190670:intron 30.0%
TCAGATGCAAACTTTATGAT+GGG + chr8_1:33845979-33845998 Msa1190670:intron 30.0%
! ATCTACCGCTATCTAAAATA+AGG - chr8_1:33846373-33846392 None:intergenic 30.0%
GTGCATTCAACTTTAATAGA+TGG + chr8_1:33846450-33846469 Msa1190670:CDS 30.0%
TTCAACTTTAATAGATGGGA+AGG + chr8_1:33846455-33846474 Msa1190670:CDS 30.0%
ATTTCGGTCAATTTAACTCA+GGG + chr8_1:33846593-33846612 Msa1190670:intron 30.0%
! AAGGTATATCGGCTATATAT+AGG - chr8_1:33846678-33846697 None:intergenic 30.0%
GATATAAGCACAAGGTATAT+CGG - chr8_1:33846689-33846708 None:intergenic 30.0%
TAATTCTCACATGGTAGTTA+TGG + chr8_1:33846844-33846863 Msa1190670:intron 30.0%
CATTCTGATAGCTTCTATAA+TGG - chr8_1:33846871-33846890 None:intergenic 30.0%
! AATGATATCAGCATTTTGCA+GGG + chr8_1:33846887-33846906 Msa1190670:intron 30.0%
!!! AAACTGACATGTCATTTTGA+AGG - chr8_1:33847213-33847232 None:intergenic 30.0%
CAAATTCAATAGTCAGAAGA+AGG + chr8_1:33847363-33847382 Msa1190670:intron 30.0%
! ATTGAATTTTACCTGAATGG+TGG - chr8_1:33847512-33847531 None:intergenic 30.0%
! TGGATTGAATTTTACCTGAA+TGG - chr8_1:33847515-33847534 None:intergenic 30.0%
TGTCCTTTATGATTATCCAT+TGG + chr8_1:33847540-33847559 Msa1190670:intron 30.0%
CAACCAATGGATAATCATAA+AGG - chr8_1:33847546-33847565 None:intergenic 30.0%
! GGACCTTTTCTTAATGTTTA+TGG - chr8_1:33847598-33847617 None:intergenic 30.0%
ATCTTGAGTGTTCCTTAAAA+TGG - chr8_1:33847619-33847638 None:intergenic 30.0%
ACTCAAGATAAGCATCTTTA+AGG + chr8_1:33847630-33847649 Msa1190670:intron 30.0%
CATAACTGCAAATATGTAGT+TGG + chr8_1:33847889-33847908 Msa1190670:intron 30.0%
GTGCATTGAAAGTTTAATGT+TGG + chr8_1:33847927-33847946 Msa1190670:intron 30.0%
! GAAAGTTTAATGTTGGTAGA+CGG + chr8_1:33847934-33847953 Msa1190670:intron 30.0%
! AATATCCATCTAAAACAACC+TGG - chr8_1:33847992-33848011 None:intergenic 30.0%
! TTCATTTTCATCGCTTATCA+TGG + chr8_1:33848124-33848143 Msa1190670:intron 30.0%
GATTAATAGGAAGTCAGTAA+TGG - chr8_1:33848253-33848272 None:intergenic 30.0%
CGTGATAAAATTTCTGTATG+AGG + chr8_1:33848430-33848449 Msa1190670:intron 30.0%
TATGAGGAGAATATAGTAAC+TGG + chr8_1:33848446-33848465 Msa1190670:intron 30.0%
! TCAACTTTTAAACGAAACCT+TGG + chr8_1:33848532-33848551 Msa1190670:intron 30.0%
TATGGCAATATACAACTTTG+AGG + chr8_1:33848562-33848581 Msa1190670:intron 30.0%
! CAATATACAACTTTGAGGAA+TGG + chr8_1:33848567-33848586 Msa1190670:intron 30.0%
GGAAATTATGTGTTGCAATT+TGG + chr8_1:33848656-33848675 Msa1190670:intron 30.0%
!! ATTTTACCATCATTTGGGTT+AGG + chr8_1:33848788-33848807 Msa1190670:intron 30.0%
TAAGGCATATCTATCTAATG+TGG + chr8_1:33848871-33848890 Msa1190670:intron 30.0%
! TTTCTTATGTGTCTTTTGGA+AGG + chr8_1:33849153-33849172 Msa1190670:intron 30.0%
! ACAAATATAAGGCTTTTAGC+GGG - chr8_1:33849323-33849342 None:intergenic 30.0%
! TTATTCTTTTCCTCTGTTGT+AGG + chr8_1:33849482-33849501 Msa1190670:intron 30.0%
! AAGGGCAATTTTCAGTTTTT+GGG + chr8_1:33849532-33849551 Msa1190670:CDS 30.0%
GTGAAACTGTGTAATTTGAA+AGG - chr8_1:33850012-33850031 None:intergenic 30.0%
! TGGAAGTGGTAGTGTAAAAA+GGG - chr8_1:33844250-33844269 None:intergenic 35.0%
CCATTGATGTGAAAAAAGAG+TGG - chr8_1:33844304-33844323 None:intergenic 35.0%
!!! CCACTCTTTTTTCACATCAA+TGG + chr8_1:33844301-33844320 Msa1190670:exon 35.0%
AGAACAAAACACAACCTGTA+TGG - chr8_1:33844660-33844679 None:intergenic 35.0%
GTCTTAAGTTCGAATCATTG+AGG + chr8_1:33844768-33844787 Msa1190670:intron 35.0%
TGAGGTTTCAACAATTCTGT+TGG + chr8_1:33844786-33844805 Msa1190670:intron 35.0%
AACAATTCTGTTGGAACACA+TGG + chr8_1:33844795-33844814 Msa1190670:intron 35.0%
ATTCAGCCTAGTAATCTCTT+CGG + chr8_1:33844854-33844873 Msa1190670:intron 35.0%
GTTCCAACAAATTCTTGTGT+TGG + chr8_1:33844911-33844930 Msa1190670:intron 35.0%
GAAGTTGGAACGAAATTAGA+AGG + chr8_1:33844968-33844987 Msa1190670:intron 35.0%
TTGGAACGAAATTAGAAGGT+TGG + chr8_1:33844972-33844991 Msa1190670:intron 35.0%
ATTAGCAGGAGCAACTAAAT+AGG - chr8_1:33845100-33845119 None:intergenic 35.0%
ATTCGCATAAAAAGGACTGA+TGG + chr8_1:33845530-33845549 Msa1190670:intron 35.0%
TTCGCATAAAAAGGACTGAT+GGG + chr8_1:33845531-33845550 Msa1190670:intron 35.0%
AAACCTTATGGAACAATGGA+GGG + chr8_1:33845684-33845703 Msa1190670:CDS 35.0%
AAAATAACCCTCGAGTTTAC+AGG + chr8_1:33845877-33845896 Msa1190670:intron 35.0%
CTCAGATGCAAACTTTATGA+TGG + chr8_1:33845978-33845997 Msa1190670:intron 35.0%
TGGAATCCACAAGACAAAAT+AGG + chr8_1:33846005-33846024 Msa1190670:intron 35.0%
! CTCATTCCTATTTTGTCTTG+TGG - chr8_1:33846014-33846033 None:intergenic 35.0%
GGGTCTGTAAAATCTTAGAA+AGG - chr8_1:33846116-33846135 None:intergenic 35.0%
CCAAGGCTTAAAAGATGTTA+TGG - chr8_1:33846219-33846238 None:intergenic 35.0%
! CCATAACATCTTTTAAGCCT+TGG + chr8_1:33846216-33846235 Msa1190670:intron 35.0%
TGAAACGTCGTATTCATACA+AGG + chr8_1:33846322-33846341 Msa1190670:intron 35.0%
! TTAGATAGCGGTAGATGAAA+AGG + chr8_1:33846377-33846396 Msa1190670:intron 35.0%
TATATTGGCAAGTATACCAG+CGG + chr8_1:33846404-33846423 Msa1190670:CDS 35.0%
TAAAGTTGAATGCACCAAAG+AGG - chr8_1:33846445-33846464 None:intergenic 35.0%
GATTTCGGTCAATTTAACTC+AGG + chr8_1:33846592-33846611 Msa1190670:intron 35.0%
!! AGGTTGCTGATTCTAGAAAA+AGG + chr8_1:33846713-33846732 Msa1190670:intron 35.0%
! GAATGATATCAGCATTTTGC+AGG + chr8_1:33846886-33846905 Msa1190670:intron 35.0%
! ATGATATCAGCATTTTGCAG+GGG + chr8_1:33846888-33846907 Msa1190670:intron 35.0%
AGTTCTCCTTCAATCCATAA+AGG + chr8_1:33846919-33846938 Msa1190670:CDS 35.0%
CAATATCCAGTGTAGATTGA+AGG - chr8_1:33846973-33846992 None:intergenic 35.0%
TCAATCTACACTGGATATTG+TGG + chr8_1:33846973-33846992 Msa1190670:CDS 35.0%
! ACTAGTCTCATGTCAAATGA+TGG - chr8_1:33847296-33847315 None:intergenic 35.0%
TCATTCTTAGTGCAATTCCT+TGG + chr8_1:33847339-33847358 Msa1190670:intron 35.0%
CTGACTATTGAATTTGTCCA+AGG - chr8_1:33847359-33847378 None:intergenic 35.0%
GTTGAGTTTGTCATTGAGAA+AGG + chr8_1:33847439-33847458 Msa1190670:CDS 35.0%
TTTGTCATTGAGAAAGGAGA+CGG + chr8_1:33847445-33847464 Msa1190670:CDS 35.0%
TCGATCAAATCAACAACCAA+TGG - chr8_1:33847559-33847578 None:intergenic 35.0%
! GGAATTTTGCAAAACTGGTA+AGG + chr8_1:33848030-33848049 Msa1190670:intron 35.0%
AAATGAAGAGCGATATACAC+TGG - chr8_1:33848111-33848130 None:intergenic 35.0%
CTGGTAAATCAGACCAAATA+TGG - chr8_1:33848155-33848174 None:intergenic 35.0%
! ATTTAGTTCACTCAGAGAAC+TGG - chr8_1:33848174-33848193 None:intergenic 35.0%
! TATTGCCATAGTTGTTTCCA+AGG - chr8_1:33848552-33848571 None:intergenic 35.0%
TATAAGGGATGAGAGCAATA+AGG + chr8_1:33848606-33848625 Msa1190670:intron 35.0%
ATGAGAGCAATAAGGAAGTA+TGG + chr8_1:33848614-33848633 Msa1190670:intron 35.0%
GCATATATTGCTGTATAACG+TGG + chr8_1:33848719-33848738 Msa1190670:intron 35.0%
!! CCTTACAAACCGATTTTGTA+GGG - chr8_1:33848819-33848838 None:intergenic 35.0%
! TTCTGAGAGAATAGCTTGAT+TGG - chr8_1:33848969-33848988 None:intergenic 35.0%
!! TTATGTGTCTTTTGGAAGGA+TGG + chr8_1:33849157-33849176 Msa1190670:intron 35.0%
!! TATGTGTCTTTTGGAAGGAT+GGG + chr8_1:33849158-33849177 Msa1190670:intron 35.0%
! CAAATATAAGGCTTTTAGCG+GGG - chr8_1:33849322-33849341 None:intergenic 35.0%
TGCAAAATAAGAGTGAAAGG+TGG + chr8_1:33849361-33849380 Msa1190670:intron 35.0%
! GAAGGGCAATTTTCAGTTTT+TGG + chr8_1:33849531-33849550 Msa1190670:CDS 35.0%
! GTGGAAGTGGTAGTGTAAAA+AGG - chr8_1:33844251-33844270 None:intergenic 40.0%
ATGTTGAAGGAAGAAGAGAG+AGG - chr8_1:33844332-33844351 None:intergenic 40.0%
TGCTTCACAAAGAGCCAATT+AGG + chr8_1:33844410-33844429 Msa1190670:CDS 40.0%
AACCATGGAACTGAACTGAA+CGG - chr8_1:33844522-33844541 None:intergenic 40.0%
TTCGAACTTAAGACCTTGTG+AGG - chr8_1:33844762-33844781 None:intergenic 40.0%
GACCCAACACAAGAATTTGT+TGG - chr8_1:33844917-33844936 None:intergenic 40.0%
!! TATATGTGTTGGTGTCGTGT+CGG - chr8_1:33845237-33845256 None:intergenic 40.0%
GAATCTATGAAGCACGGATA+CGG - chr8_1:33845340-33845359 None:intergenic 40.0%
ATTCCACAGAGGAAACCTTA+TGG + chr8_1:33845672-33845691 Msa1190670:CDS 40.0%
GAGGAAACCTTATGGAACAA+TGG + chr8_1:33845680-33845699 Msa1190670:CDS 40.0%
GAAACCTTATGGAACAATGG+AGG + chr8_1:33845683-33845702 Msa1190670:CDS 40.0%
AACCTTATGGAACAATGGAG+GGG + chr8_1:33845685-33845704 Msa1190670:CDS 40.0%
ATCTGAGCATCTCTGTAACA+TGG - chr8_1:33845965-33845984 None:intergenic 40.0%
!! GCAAACTTTATGATGGGTCA+TGG + chr8_1:33845985-33846004 Msa1190670:intron 40.0%
ATCAACGAAAAGACACACCA+AGG - chr8_1:33846236-33846255 None:intergenic 40.0%
ACCTTGTGCTTATATCACAC+AGG + chr8_1:33846693-33846712 Msa1190670:intron 40.0%
ACCTGTGTGATATAAGCACA+AGG - chr8_1:33846697-33846716 None:intergenic 40.0%
! TGATATCAGCATTTTGCAGG+GGG + chr8_1:33846889-33846908 Msa1190670:intron 40.0%
! CCTGTTCCTTTATGGATTGA+AGG - chr8_1:33846928-33846947 None:intergenic 40.0%
CCTTCAATCCATAAAGGAAC+AGG + chr8_1:33846925-33846944 Msa1190670:CDS 40.0%
ATCTGCATCCTGTTCCTTTA+TGG - chr8_1:33846936-33846955 None:intergenic 40.0%
TGTGAACCTTCAATCTACAC+TGG + chr8_1:33846964-33846983 Msa1190670:CDS 40.0%
ACTAGAGACATTACAGGTGA+TGG + chr8_1:33847000-33847019 Msa1190670:intron 40.0%
! TGGTCTATCTTTTCTGTTGC+CGG + chr8_1:33847155-33847174 Msa1190670:CDS 40.0%
TTCAATAGTCAGAAGAAGGG+AGG + chr8_1:33847367-33847386 Msa1190670:intron 40.0%
! GGTTCAACATTTTCTCCAGT+TGG + chr8_1:33847466-33847485 Msa1190670:CDS 40.0%
! TCAACATTTTCTCCAGTTGG+TGG + chr8_1:33847469-33847488 Msa1190670:CDS 40.0%
CTGACAGTTAATTACTTGCC+AGG + chr8_1:33847971-33847990 Msa1190670:intron 40.0%
!!! ACTTGCCAGGTTGTTTTAGA+TGG + chr8_1:33847984-33848003 Msa1190670:intron 40.0%
TATTCAGCTCCTTTAACTGC+AGG + chr8_1:33848008-33848027 Msa1190670:CDS 40.0%
ATTCAGCTCCTTTAACTGCA+GGG + chr8_1:33848009-33848028 Msa1190670:CDS 40.0%
GCAAAATTCCCTGCAGTTAA+AGG - chr8_1:33848020-33848039 None:intergenic 40.0%
! TGCAGGGAATTTTGCAAAAC+TGG + chr8_1:33848025-33848044 Msa1190670:CDS 40.0%
GAGCGATATACACTGGATAT+TGG - chr8_1:33848104-33848123 None:intergenic 40.0%
!! AGGAAGTCAGTAATGGATTC+AGG - chr8_1:33848246-33848265 None:intergenic 40.0%
CGAAACCTTGGAAACAACTA+TGG + chr8_1:33848544-33848563 Msa1190670:intron 40.0%
TAGGCTGAACCCTACAAAAT+CGG + chr8_1:33848807-33848826 Msa1190670:intron 40.0%
!! CCCTACAAAATCGGTTTGTA+AGG + chr8_1:33848816-33848835 Msa1190670:intron 40.0%
!! GCCTTACAAACCGATTTTGT+AGG - chr8_1:33848820-33848839 None:intergenic 40.0%
CACTCAGTCACATATCCTTT+AGG + chr8_1:33848904-33848923 Msa1190670:intron 40.0%
GTCACATATCCTTTAGGTGA+TGG + chr8_1:33848910-33848929 Msa1190670:intron 40.0%
!! CATATCCTTTAGGTGATGGA+TGG + chr8_1:33848914-33848933 Msa1190670:intron 40.0%
!! GTGATGGATGGAGCATATAA+TGG + chr8_1:33848926-33848945 Msa1190670:CDS 40.0%
CAAGCTATTCTCTCAGAAAC+CGG + chr8_1:33848971-33848990 Msa1190670:CDS 40.0%
!! ATGTGTCTTTTGGAAGGATG+GGG + chr8_1:33849159-33849178 Msa1190670:intron 40.0%
TGTTTATGGAGCAGTTGCTA+TGG + chr8_1:33849204-33849223 Msa1190670:CDS 40.0%
AAATGATATCCCTCCTAAGC+CGG - chr8_1:33849508-33849527 None:intergenic 40.0%
CTTAGGAGGGATATCATTTG+AGG + chr8_1:33849509-33849528 Msa1190670:CDS 40.0%
GAGGGATATCATTTGAGGAA+GGG + chr8_1:33849514-33849533 Msa1190670:CDS 40.0%
ATGTGCAGATATACCACCAT+AGG + chr8_1:33849653-33849672 Msa1190670:intron 40.0%
TGTGCAGATATACCACCATA+GGG + chr8_1:33849654-33849673 Msa1190670:intron 40.0%
ATTCTCCCCGAGATAAAAAC+CGG + chr8_1:33849683-33849702 Msa1190670:CDS 40.0%
! ATATCCCCGGTTTTTATCTC+GGG - chr8_1:33849692-33849711 None:intergenic 40.0%
! GATATCCCCGGTTTTTATCT+CGG - chr8_1:33849693-33849712 None:intergenic 40.0%
! TTGGCCTTCAATAAGCTTTG+CGG - chr8_1:33849723-33849742 None:intergenic 40.0%
AGACGTACTCAACTTTCCTT+CGG - chr8_1:33849761-33849780 None:intergenic 40.0%
! GAAACCTTTTTACCTGCTCA+GGG - chr8_1:33849801-33849820 None:intergenic 40.0%
! TGAAACCTTTTTACCTGCTC+AGG - chr8_1:33849802-33849821 None:intergenic 40.0%
TTTACAACACAACCTGCATC+TGG - chr8_1:33849886-33849905 None:intergenic 40.0%
CCTAATCTGTTCTGTGGAAG+TGG - chr8_1:33844264-33844283 None:intergenic 45.0%
CCACTTCCACAGAACAGATT+AGG + chr8_1:33844261-33844280 Msa1190670:five_prime_UTR 45.0%
! ACTTTGTGTGGCGGAAGAAA+GGG - chr8_1:33844373-33844392 None:intergenic 45.0%
TTCGAGAAGGTGACTTTGTG+TGG - chr8_1:33844385-33844404 None:intergenic 45.0%
GTGAAGCAGAAGATTCGAGA+AGG - chr8_1:33844398-33844417 None:intergenic 45.0%
! CATCGTCACATTGGCCTAAT+TGG - chr8_1:33844427-33844446 None:intergenic 45.0%
CGTCACTTGGTATAACTCAG+AGG + chr8_1:33844450-33844469 Msa1190670:CDS 45.0%
ACGGTGGAAGCAATTAGGAT+TGG - chr8_1:33844503-33844522 None:intergenic 45.0%
ACTGAACGGTGGAAGCAATT+AGG - chr8_1:33844508-33844527 None:intergenic 45.0%
AGAAGACACGTAAGGAACCA+TGG - chr8_1:33844537-33844556 None:intergenic 45.0%
ATACAGAATCGCATTCGCAG+CGG - chr8_1:33844561-33844580 None:intergenic 45.0%
GAATGCGATTCTGTATTCGC+CGG + chr8_1:33844565-33844584 Msa1190670:CDS 45.0%
!! GTTCTAGGAACCTTTGTGTC+CGG - chr8_1:33844587-33844606 None:intergenic 45.0%
GACACAAAGGTTCCTAGAAC+TGG + chr8_1:33844587-33844606 Msa1190670:CDS 45.0%
AGAGCAACTTCACCAGTTCT+AGG - chr8_1:33844602-33844621 None:intergenic 45.0%
GAACTGGTGAAGTTGCTCTT+AGG + chr8_1:33844603-33844622 Msa1190670:CDS 45.0%
CCTGTATGGCCTTCATGTTA+GGG - chr8_1:33844646-33844665 None:intergenic 45.0%
ACCTGTATGGCCTTCATGTT+AGG - chr8_1:33844647-33844666 None:intergenic 45.0%
GAGATTACTAGGCTGAATCG+CGG - chr8_1:33844852-33844871 None:intergenic 45.0%
CTGTCACCGAAGAGATTACT+AGG - chr8_1:33844863-33844882 None:intergenic 45.0%
AACGTTCCAACAGTCCTGTA+TGG - chr8_1:33844943-33844962 None:intergenic 45.0%
ATACAGGACTGTTGGAACGT+TGG + chr8_1:33844942-33844961 Msa1190670:intron 45.0%
TTGGAACGTTGGTGTGAAGT+TGG + chr8_1:33844953-33844972 Msa1190670:intron 45.0%
CCATCATAAGTCCCATGACT+TGG - chr8_1:33845011-33845030 None:intergenic 45.0%
CCAAGTCATGGGACTTATGA+TGG + chr8_1:33845008-33845027 Msa1190670:intron 45.0%
AGTCATGGGACTTATGATGG+TGG + chr8_1:33845011-33845030 Msa1190670:intron 45.0%
GTCATGGGACTTATGATGGT+GGG + chr8_1:33845012-33845031 Msa1190670:intron 45.0%
!! GGACTTATGATGGTGGGATT+TGG + chr8_1:33845018-33845037 Msa1190670:intron 45.0%
!! ATTTGGTCCTCCGGATTAGT+CGG + chr8_1:33845035-33845054 Msa1190670:intron 45.0%
TATAAAGCACGGACACTCCT+GGG + chr8_1:33845200-33845219 Msa1190670:intron 45.0%
! GTCAGTGTCTGTGTCTTGTT+CGG + chr8_1:33845305-33845324 Msa1190670:intron 45.0%
! GGGAGTAGCTAGTTTCTAAC+TGG + chr8_1:33845551-33845570 Msa1190670:intron 45.0%
ATCTGTTGAGGATTCCACAG+AGG + chr8_1:33845661-33845680 Msa1190670:CDS 45.0%
GTTCCATAAGGTTTCCTCTG+TGG - chr8_1:33845678-33845697 None:intergenic 45.0%
TTCCCCTCCATTGTTCCATA+AGG - chr8_1:33845690-33845709 None:intergenic 45.0%
AAGTATACCAGCGGAACTGA+AGG + chr8_1:33846413-33846432 Msa1190670:CDS 45.0%
ACTGAAGGAAAAGGCCTCTT+TGG + chr8_1:33846428-33846447 Msa1190670:CDS 45.0%
! GATATCAGCATTTTGCAGGG+GGG + chr8_1:33846890-33846909 Msa1190670:intron 45.0%
GGCAGAACTAGAGACATTAC+AGG + chr8_1:33846994-33847013 Msa1190670:CDS 45.0%
GATCTTGATATTGCGGCAAC+AGG + chr8_1:33847128-33847147 Msa1190670:intron 45.0%
GGCAACAGAAAAGATAGACC+AGG - chr8_1:33847156-33847175 None:intergenic 45.0%
! GGTCTATCTTTTCTGTTGCC+GGG + chr8_1:33847156-33847175 Msa1190670:CDS 45.0%
! GTCTATCTTTTCTGTTGCCG+GGG + chr8_1:33847157-33847176 Msa1190670:CDS 45.0%
GGCAATACACGGAATATCCA+CGG + chr8_1:33847178-33847197 Msa1190670:CDS 45.0%
! TTTTGTAGGCTTTCAGGGAG+AGG + chr8_1:33847412-33847431 Msa1190670:intron 45.0%
TTTCTCTCTTCTCCACCAAC+TGG - chr8_1:33847484-33847503 None:intergenic 45.0%
GAGAAAAACTGCCACCATTC+AGG + chr8_1:33847498-33847517 Msa1190670:CDS 45.0%
CGCAAACATTTCAGTCAGCT+AGG + chr8_1:33848293-33848312 Msa1190670:intron 45.0%
!! GGAAGTATGGTTTTCAGCTG+TGG + chr8_1:33848627-33848646 Msa1190670:intron 45.0%
GTTCAGCCTAACCCAAATGA+TGG - chr8_1:33848797-33848816 None:intergenic 45.0%
ATGCTCCATCCATCACCTAA+AGG - chr8_1:33848922-33848941 None:intergenic 45.0%
!! ACCACTGGTCTTATCTAGTC+CGG - chr8_1:33848993-33849012 None:intergenic 45.0%
CAAGGGAACATTGTAACCAC+TGG - chr8_1:33849008-33849027 None:intergenic 45.0%
CAGTGGTTACAATGTTCCCT+TGG + chr8_1:33849006-33849025 Msa1190670:CDS 45.0%
! AAGGCTTTTAGCGGGGAAAT+AGG - chr8_1:33849315-33849334 None:intergenic 45.0%
! TCTTTTCCTCTGTTGTAGGC+CGG + chr8_1:33849486-33849505 Msa1190670:intron 45.0%
GGAGGGATATCATTTGAGGA+AGG + chr8_1:33849513-33849532 Msa1190670:CDS 45.0%
GAGAATATCTCTCCCTATGG+TGG - chr8_1:33849669-33849688 None:intergenic 45.0%
TTCTCCCCGAGATAAAAACC+GGG + chr8_1:33849684-33849703 Msa1190670:CDS 45.0%
! TATCCCCGGTTTTTATCTCG+GGG - chr8_1:33849691-33849710 None:intergenic 45.0%
CGTTCCGCAAAGCTTATTGA+AGG + chr8_1:33849716-33849735 Msa1190670:CDS 45.0%
CAACCTGCATCTGGAAAATC+AGG - chr8_1:33849877-33849896 None:intergenic 45.0%
!! AATAAAAAATATTACTAATT+AGG - chr8_1:33849467-33849486 None:intergenic 5.0%
AAAGGGACACGTGTACACTG+TGG - chr8_1:33844233-33844252 None:intergenic 50.0%
GCGAGTGATCGGAATGTTGA+AGG - chr8_1:33844345-33844364 None:intergenic 50.0%
! GACTTTGTGTGGCGGAAGAA+AGG - chr8_1:33844374-33844393 None:intergenic 50.0%
GAGAAGGTGACTTTGTGTGG+CGG - chr8_1:33844382-33844401 None:intergenic 50.0%
GTGACGTGTCATCGTCACAT+TGG - chr8_1:33844436-33844455 None:intergenic 50.0%
TGTGACGATGACACGTCACT+TGG + chr8_1:33844437-33844456 Msa1190670:CDS 50.0%
CATGGAACTGAACTGAACGG+TGG - chr8_1:33844519-33844538 None:intergenic 50.0%
CACCGTTCAGTTCAGTTCCA+TGG + chr8_1:33844517-33844536 Msa1190670:CDS 50.0%
TACAGAATCGCATTCGCAGC+GGG - chr8_1:33844560-33844579 None:intergenic 50.0%
TCTGTATTCGCCGGACACAA+AGG + chr8_1:33844574-33844593 Msa1190670:CDS 50.0%
CCTTCATGTTAGGGCTTGCA+GGG - chr8_1:33844637-33844656 None:intergenic 50.0%
CCCTAACATGAAGGCCATAC+AGG + chr8_1:33844643-33844662 Msa1190670:CDS 50.0%
TGTGTTGGGTCAGTCCATAC+AGG + chr8_1:33844926-33844945 Msa1190670:intron 50.0%
GTCAGTCCATACAGGACTGT+TGG + chr8_1:33844934-33844953 Msa1190670:intron 50.0%
!! TCCTCCGGATTAGTCGGTAT+TGG + chr8_1:33845041-33845060 Msa1190670:intron 50.0%
!! CCTCCGGATTAGTCGGTATT+GGG + chr8_1:33845042-33845061 Msa1190670:intron 50.0%
! CGTCCCAATACCGACTAATC+CGG - chr8_1:33845048-33845067 None:intergenic 50.0%
!! CGGATTAGTCGGTATTGGGA+CGG + chr8_1:33845046-33845065 Msa1190670:intron 50.0%
CTATAAAGCACGGACACTCC+TGG + chr8_1:33845199-33845218 Msa1190670:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr8_1:33845334-33845353 None:intergenic 50.0%
ACCAGCGGAACTGAAGGAAA+AGG + chr8_1:33846419-33846438 Msa1190670:CDS 50.0%
GGATATTCCGTGTATTGCCC+CGG - chr8_1:33847177-33847196 None:intergenic 50.0%
TTTGAAGGAGTCACTGACCG+TGG - chr8_1:33847198-33847217 None:intergenic 50.0%
! GGTTTTCAGCTGTGGAAGAC+TGG + chr8_1:33848635-33848654 Msa1190670:intron 50.0%
! ACCGGACTAGATAAGACCAG+TGG + chr8_1:33848989-33849008 Msa1190670:CDS 50.0%
CCAGCGGGCATTATTTCCAA+GGG - chr8_1:33849025-33849044 None:intergenic 50.0%
TCCAGCGGGCATTATTTCCA+AGG - chr8_1:33849026-33849045 None:intergenic 50.0%
AAGGGGCTCAAATTGTCCAG+CGG - chr8_1:33849041-33849060 None:intergenic 50.0%
GGCTCATAACGAAGCTTCTG+AGG + chr8_1:33849225-33849244 Msa1190670:CDS 50.0%
GGGGAGAATATCTCTCCCTA+TGG - chr8_1:33849672-33849691 None:intergenic 50.0%
TCTCCCCGAGATAAAAACCG+GGG + chr8_1:33849685-33849704 Msa1190670:CDS 50.0%
TGCGGAACGAATGATATCCC+CGG - chr8_1:33849705-33849724 None:intergenic 50.0%
AACTTTCCTTCGGCAACACG+AGG - chr8_1:33849751-33849770 None:intergenic 50.0%
TGCTCCCTGAGCAGGTAAAA+AGG + chr8_1:33849794-33849813 Msa1190670:three_prime_UTR 50.0%
! CAGCCTGATTTTCCAGATGC+AGG + chr8_1:33849871-33849890 Msa1190670:three_prime_UTR 50.0%
TGCGCGCCTAATCTGTTCTG+TGG - chr8_1:33844270-33844289 None:intergenic 55.0%
! AAAGGGTGGTGGCGAGTGAT+CGG - chr8_1:33844356-33844375 None:intergenic 55.0%
! TTGTGTGGCGGAAGAAAGGG+TGG - chr8_1:33844370-33844389 None:intergenic 55.0%
CCCTGCAAGCCCTAACATGA+AGG + chr8_1:33844634-33844653 Msa1190670:CDS 55.0%
GCCTTCATGTTAGGGCTTGC+AGG - chr8_1:33844638-33844657 None:intergenic 55.0%
GTGGTGAAGGCTTGAGACCT+AGG + chr8_1:33844728-33844747 Msa1190670:intron 55.0%
! CTTGTGAGGAGCACACTCCT+AGG - chr8_1:33844748-33844767 None:intergenic 55.0%
! CTAGGAGTGTGCTCCTCACA+AGG + chr8_1:33844746-33844765 Msa1190670:intron 55.0%
! AGGCTGAATCGCGGACTACT+AGG - chr8_1:33844843-33844862 None:intergenic 55.0%
!! GATGGTGGGATTTGGTCCTC+CGG + chr8_1:33845026-33845045 Msa1190670:intron 55.0%
! CCCAATACCGACTAATCCGG+AGG - chr8_1:33845045-33845064 None:intergenic 55.0%
! GCCTTTTCCTTCAGTTCCGC+TGG - chr8_1:33846423-33846442 None:intergenic 55.0%
ATATTGCGGCAACAGGCACC+TGG + chr8_1:33847135-33847154 Msa1190670:intron 55.0%
TCTGTTGCCGGGGCAATACA+CGG + chr8_1:33847167-33847186 Msa1190670:CDS 55.0%
CCCTTGGAAATAATGCCCGC+TGG + chr8_1:33849022-33849041 Msa1190670:CDS 55.0%
AGGGGCTCAAATTGTCCAGC+GGG - chr8_1:33849040-33849059 None:intergenic 55.0%
! TGTTGTAGGCCGGCTTAGGA+GGG + chr8_1:33849496-33849515 Msa1190670:intron 55.0%
TTTCCTTCGGCAACACGAGG+CGG - chr8_1:33849748-33849767 None:intergenic 55.0%
TCTTACAGTGCTCCCTGAGC+AGG + chr8_1:33849786-33849805 Msa1190670:three_prime_UTR 55.0%
! TGTGGCGGAAGAAAGGGTGG+TGG - chr8_1:33844367-33844386 None:intergenic 60.0%
GCAGCGGGAGAAGACACGTA+AGG - chr8_1:33844545-33844564 None:intergenic 60.0%
GCACGGACACTCCTGGGATA+AGG + chr8_1:33845206-33845225 Msa1190670:intron 60.0%
TGTCGGTCACGCCTTATCCC+AGG - chr8_1:33845220-33845239 None:intergenic 60.0%
CCTAAGCCGGCCTACAACAG+AGG - chr8_1:33849495-33849514 None:intergenic 60.0%
! CCTCTGTTGTAGGCCGGCTT+AGG + chr8_1:33849492-33849511 Msa1190670:intron 60.0%
! CTGTTGTAGGCCGGCTTAGG+AGG + chr8_1:33849495-33849514 Msa1190670:intron 60.0%
TCGGCAACACGAGGCGGTCT+TGG - chr8_1:33849742-33849761 None:intergenic 65.0%
AGACCGCCTCGTGTTGCCGA+AGG + chr8_1:33849742-33849761 Msa1190670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 33844201 33850035 33844201 ID=Msa1190670;Name=Msa1190670
chr8_1 mRNA 33844201 33850035 33844201 ID=Msa1190670-mRNA-1;Parent=Msa1190670;Name=Msa1190670-mRNA-1;_AED=0.08;_eAED=0.08;_QI=119|1|1|1|1|1|11|263|428
chr8_1 exon 33844201 33844664 33844201 ID=Msa1190670-mRNA-1:exon:11382;Parent=Msa1190670-mRNA-1
chr8_1 exon 33845639 33845728 33845639 ID=Msa1190670-mRNA-1:exon:11383;Parent=Msa1190670-mRNA-1
chr8_1 exon 33846381 33846476 33846381 ID=Msa1190670-mRNA-1:exon:11384;Parent=Msa1190670-mRNA-1
chr8_1 exon 33846908 33847015 33846908 ID=Msa1190670-mRNA-1:exon:11385;Parent=Msa1190670-mRNA-1
chr8_1 exon 33847150 33847199 33847150 ID=Msa1190670-mRNA-1:exon:11386;Parent=Msa1190670-mRNA-1
chr8_1 exon 33847420 33847519 33847420 ID=Msa1190670-mRNA-1:exon:11387;Parent=Msa1190670-mRNA-1
chr8_1 exon 33847993 33848046 33847993 ID=Msa1190670-mRNA-1:exon:11388;Parent=Msa1190670-mRNA-1
chr8_1 exon 33848926 33849084 33848926 ID=Msa1190670-mRNA-1:exon:11389;Parent=Msa1190670-mRNA-1
chr8_1 exon 33849175 33849297 33849175 ID=Msa1190670-mRNA-1:exon:11390;Parent=Msa1190670-mRNA-1
chr8_1 exon 33849504 33849553 33849504 ID=Msa1190670-mRNA-1:exon:11391;Parent=Msa1190670-mRNA-1
chr8_1 exon 33849661 33850035 33849661 ID=Msa1190670-mRNA-1:exon:11392;Parent=Msa1190670-mRNA-1
chr8_1 five_prime_UTR 33844201 33844319 33844201 ID=Msa1190670-mRNA-1:five_prime_utr;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33844320 33844664 33844320 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33845639 33845728 33845639 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33846381 33846476 33846381 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33846908 33847015 33846908 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33847150 33847199 33847150 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33847420 33847519 33847420 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33847993 33848046 33847993 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33848926 33849084 33848926 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33849175 33849297 33849175 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33849504 33849553 33849504 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 CDS 33849661 33849772 33849661 ID=Msa1190670-mRNA-1:cds;Parent=Msa1190670-mRNA-1
chr8_1 three_prime_UTR 33849773 33850035 33849773 ID=Msa1190670-mRNA-1:three_prime_utr;Parent=Msa1190670-mRNA-1
Gene Sequence

>Msa1190670

ATGGCGTATCCTCTCTCTTCTTCCTTCAACATTCCGATCACTCGCCACCACCCTTTCTTCCGCCACACAAAGTCACCTTCTCGAATCTTCTGCTTCACAAAGAGCCAATTAGGCCAATGTGACGATGACACGTCACTTGGTATAACTCAGAGGATAATGAAGCAATTGAAGAGTGTGATTCCAATCCTAATTGCTTCCACCGTTCAGTTCAGTTCCATGGTTCCTTACGTGTCTTCTCCCGCTGCGAATGCGATTCTGTATTCGCCGGACACAAAGGTTCCTAGAACTGGTGAAGTTGCTCTTAGGAGAGCTATCCCTGCAAGCCCTAACATGAAGGCCATACAGGAGACTCTTGAAGATATTTCGTATCTGTTGAGGATTCCACAGAGGAAACCTTATGGAACAATGGAGGGGAACGTAAAGAAAGTTTTGAAGATAGCGGTAGATGAAAAGGATTCTATATTGGCAAGTATACCAGCGGAACTGAAGGAAAAGGCCTCTTTGGTGCATTCAACTTTAATAGATGGGAAGGGGGGTTTGCAAGTTCTCCTTCAATCCATAAAGGAACAGGATGCAGATAAAGTATCTGTGAACCTTCAATCTACACTGGATATTGTGGCAGAACTAGAGACATTACAGGCACCTGGTCTATCTTTTCTGTTGCCGGGGCAATACACGGAATATCCACGGCTTTCAGGGAGAGGAACTGTTGAGTTTGTCATTGAGAAAGGAGACGGTTCAACATTTTCTCCAGTTGGTGGAGAAGAGAGAAAAACTGCCACCATTCAGGTTGTTTTAGATGGATATTCAGCTCCTTTAACTGCAGGGAATTTTGCAAAACTGGTGATGGATGGAGCATATAATGGCATAAAACTCAACTGTTCCAATCAAGCTATTCTCTCAGAAACCGGACTAGATAAGACCAGTGGTTACAATGTTCCCTTGGAAATAATGCCCGCTGGACAATTTGAGCCCCTTTATAAAACAACATTAAGTGTACAGGATGGGGAACTGCCAGTTCTGCCTCTATCTGTTTATGGAGCAGTTGCTATGGCTCATAACGAAGCTTCTGAGGAGTATTCATCACCTTATCAATTTTTCTTCTATCTCTATGATAAAAGAAATGCCGGCTTAGGAGGGATATCATTTGAGGAAGGGCAATTTTCAGTTTTTGGATATACCACCATAGGGAGAGATATTCTCCCCGAGATAAAAACCGGGGATATCATTCGTTCCGCAAAGCTTATTGAAGGCCAAGACCGCCTCGTGTTGCCGAAGGAAAGTTGA

Protein sequence

>Msa1190670

MAYPLSSSFNIPITRHHPFFRHTKSPSRIFCFTKSQLGQCDDDTSLGITQRIMKQLKSVIPILIASTVQFSSMVPYVSSPAANAILYSPDTKVPRTGEVALRRAIPASPNMKAIQETLEDISYLLRIPQRKPYGTMEGNVKKVLKIAVDEKDSILASIPAELKEKASLVHSTLIDGKGGLQVLLQSIKEQDADKVSVNLQSTLDIVAELETLQAPGLSFLLPGQYTEYPRLSGRGTVEFVIEKGDGSTFSPVGGEERKTATIQVVLDGYSAPLTAGNFAKLVMDGAYNGIKLNCSNQAILSETGLDKTSGYNVPLEIMPAGQFEPLYKTTLSVQDGELPVLPLSVYGAVAMAHNEASEEYSSPYQFFFYLYDKRNAGLGGISFEEGQFSVFGYTTIGRDILPEIKTGDIIRSAKLIEGQDRLVLPKES*