AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134840 MtrunA17_Chr7g0215381 94.737 171 9 0 11 181 11 181 1.33e-124 348
Msa1134840 MtrunA17_Chr7g0215351 94.152 171 10 0 11 181 11 181 1.91e-124 348
Msa1134840 MtrunA17_Chr7g0215421 94.152 171 10 0 11 181 11 181 4.22e-124 347
Msa1134840 MtrunA17_Chr7g0215361 94.118 170 10 0 12 181 12 181 8.70e-124 346
Msa1134840 MtrunA17_Chr7g0215431 94.706 170 9 0 12 181 12 181 7.15e-123 343
Msa1134840 MtrunA17_Chr6g0457471 84.916 179 26 1 4 181 2 180 5.91e-115 323
Msa1134840 MtrunA17_Chr6g0457461 84.358 179 24 2 4 181 2 177 3.64e-112 317
Msa1134840 MtrunA17_Chr4g0072241 50.641 156 73 3 28 180 15 169 1.16e-57 178
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134840 AT1G67090.1 71.429 182 47 2 1 181 1 178 1.04e-93 270
Msa1134840 AT5G38430.1 70.330 182 49 2 1 181 1 178 1.01e-92 268
Msa1134840 AT5G38430.2 70.330 182 49 2 1 181 1 178 1.01e-92 268
Msa1134840 AT5G38410.1 69.780 182 50 2 1 181 1 178 2.16e-92 267
Msa1134840 AT5G38420.1 69.780 182 50 2 1 181 1 178 5.92e-92 266
Msa1134840 AT5G38410.3 67.914 187 50 3 1 181 1 183 3.78e-90 261
Msa1134840 AT5G38410.2 67.033 182 48 3 1 181 1 171 1.65e-85 249
Msa1134840 AT1G67090.2 65.217 115 35 2 1 114 1 111 1.56e-45 147

Find 73 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCTCATGTGGTTAATA+TGG 0.180964 7_4:+1470493 Msa1134840:five_prime_UTR
AATTAAAAGCAAAACATAAA+TGG 0.195661 7_4:-1471581 None:intergenic
TCCTTGTTGATCTTTGTAAT+TGG 0.210267 7_4:-1470767 None:intergenic
ATTAATTATACCAATGGTTT+TGG 0.223375 7_4:-1470541 None:intergenic
AAGTTCATTGCATTGGAATT+TGG 0.263973 7_4:+1471539 Msa1134840:exon
AAGAAGTTGATTACCTTATA+AGG 0.266546 7_4:+1471129 Msa1134840:CDS
CAACCCATCCCTTCCTTATA+AGG 0.273690 7_4:-1471142 None:intergenic
GGCGCGGTGGCTCCATTTGT+TGG 0.347642 7_4:+1470722 Msa1134840:CDS
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 7_4:+1471151 Msa1134840:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 7_4:+1471347 Msa1134840:CDS
TTCTTTCGCCAATTGTTCTC+TGG 0.378466 7_4:-1471111 None:intergenic
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 7_4:+1471402 Msa1134840:CDS
TCTTCCACCATTGCTTGTAA+TGG 0.401668 7_4:-1470798 None:intergenic
GCCAATTGTTCTCTGGTCAA+TGG 0.405140 7_4:-1471104 None:intergenic
CCATATTAACCACATGAGAT+TGG 0.409471 7_4:-1470493 None:intergenic
ACCATTGACCAGAGAACAAT+TGG 0.409622 7_4:+1471103 Msa1134840:CDS
TTAAGAGTTAATGAATGAAA+TGG 0.410036 7_4:+1471685 Msa1134840:three_prime_UTR
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_4:+1471373 Msa1134840:CDS
ATATAGGTGTGGCCTCCTAT+TGG 0.416991 7_4:+1471047 Msa1134840:intron
GTCTACTAAGTTCATTGCAT+TGG 0.420283 7_4:+1471532 Msa1134840:exon
GTTGGACTCAAGTCCATGGC+TGG 0.431505 7_4:+1470740 Msa1134840:CDS
CCTTGTTGATCTTTGTAATT+GGG 0.431774 7_4:-1470766 None:intergenic
TCAAACTTCTTCTTGCCAAT+AGG 0.435101 7_4:-1471062 None:intergenic
ATTAAAAGCAAAACATAAAT+GGG 0.436679 7_4:-1471580 None:intergenic
ATGATACGGACAAAGGCATC+AGG 0.443523 7_4:-1471451 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 7_4:-1471401 None:intergenic
CGCGCCTCGTCGGTTCAATC+CGG 0.461844 7_4:+1470701 Msa1134840:CDS
CATAGTGGTGCATTATGATA+AGG 0.462755 7_4:+1470448 Msa1134840:five_prime_UTR
CATATTAACCACATGAGATT+GGG 0.468050 7_4:-1470492 None:intergenic
CAAGTGAAGATAAGATTAGT+AGG 0.473443 7_4:+1470404 Msa1134840:five_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_4:+1471454 Msa1134840:CDS
CCTTGTTTGGTGACATGTGT+TGG 0.503442 7_4:+1471741 Msa1134840:three_prime_UTR
ATTACCTTATAAGGAAGGGA+TGG 0.507588 7_4:+1471138 Msa1134840:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 7_4:-1471059 None:intergenic
ATTTGTTGGACTCAAGTCCA+TGG 0.520007 7_4:+1470736 Msa1134840:CDS
AGTTGATTACCTTATAAGGA+AGG 0.522099 7_4:+1471133 Msa1134840:CDS
TTTCTGATTAATTATACCAA+TGG 0.524266 7_4:-1470547 None:intergenic
ATGGACTTGAGTCCAACAAA+TGG 0.526746 7_4:-1470734 None:intergenic
TCCACCATTGCTTGTAATGG+AGG 0.530318 7_4:-1470795 None:intergenic
CATAGTATCCTGGTGACTTG+TGG 0.542155 7_4:-1471333 None:intergenic
CGTGAGAACCACAAGTCACC+AGG 0.544938 7_4:+1471325 Msa1134840:CDS
CCAACACATGTCACCAAACA+AGG 0.545390 7_4:-1471741 None:intergenic
AACTGTAGTTACAGCTGAAG+AGG 0.546956 7_4:-1470675 None:intergenic
TTACCTTATAAGGAAGGGAT+GGG 0.559428 7_4:+1471139 Msa1134840:CDS
AACAAATGGAGCCACCGCGC+CGG 0.560979 7_4:-1470720 None:intergenic
TACAGTTAACCGCGCCTCGT+CGG 0.566785 7_4:+1470691 Msa1134840:CDS
GTTGATTACCTTATAAGGAA+GGG 0.567383 7_4:+1471134 Msa1134840:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 7_4:-1471343 None:intergenic
CAATGAACTTAGTAGACTGC+AGG 0.571658 7_4:-1471526 None:intergenic
TCCACGTGACATTCACATAG+TGG 0.573748 7_4:+1470433 Msa1134840:five_prime_UTR
AAGTCACCAGGATACTATGA+TGG 0.574009 7_4:+1471337 Msa1134840:CDS
CGGATTGAACCGACGAGGCG+CGG 0.577823 7_4:-1470700 None:intergenic
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_4:-1471465 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 7_4:-1471324 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 7_4:-1471385 None:intergenic
TGTAATTGGGAAGCCAGCCA+TGG 0.598497 7_4:-1470753 None:intergenic
ATTGTGAAAATGATAAACAT+TGG 0.600821 7_4:-1470518 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.600961 7_4:-1471101 None:intergenic
ATTACCTCCATTACAAGCAA+TGG 0.601253 7_4:+1470791 Msa1134840:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 7_4:+1471166 Msa1134840:CDS
ACCTCCATTACAAGCAATGG+TGG 0.613355 7_4:+1470794 Msa1134840:CDS
TAATTAACAATTAACAACAA+TGG 0.615285 7_4:+1470637 Msa1134840:exon
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 7_4:-1471097 None:intergenic
GTCGGTTCAATCCGGCGCGG+TGG 0.622925 7_4:+1470709 Msa1134840:CDS
CCCAATTACAAAGATCAACA+AGG 0.645329 7_4:+1470766 Msa1134840:CDS
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_4:+1470814 Msa1134840:CDS
AGCTGAAGAGGAGATCATAG+AGG 0.655372 7_4:-1470663 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 7_4:-1471450 None:intergenic
CGCGCCGGATTGAACCGACG+AGG 0.686777 7_4:-1470705 None:intergenic
GAATCCGATGATACGGACAA+AGG 0.687909 7_4:-1471458 None:intergenic
CTCGTCGGTTCAATCCGGCG+CGG 0.728671 7_4:+1470706 Msa1134840:CDS
ACCACTATGTGAATGTCACG+TGG 0.738979 7_4:-1470434 None:intergenic
ATGGACGTTACTGGACAATG+TGG 0.742197 7_4:+1471356 Msa1134840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATATAATGTTTTGAAAT+TGG - chr7_4:1470573-1470592 None:intergenic 10.0%
!!! TTTATATAATGTTTTGAAAT+TGG - chr7_4:1470573-1470592 None:intergenic 10.0%
!! TAATTAACAATTAACAACAA+TGG + chr7_4:1470637-1470656 Msa1134840:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr7_4:1470891-1470910 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr7_4:1470891-1470910 Msa1134840:intron 15.0%
!! ATTAAAAGCAAAACATAAAT+GGG - chr7_4:1471583-1471602 None:intergenic 15.0%
!! AATTAAAAGCAAAACATAAA+TGG - chr7_4:1471584-1471603 None:intergenic 15.0%
!! TAATTAACAATTAACAACAA+TGG + chr7_4:1470637-1470656 Msa1134840:exon 15.0%
!!! ATAATGTACAAAGTTTTAAT+TGG - chr7_4:1470891-1470910 None:intergenic 15.0%
!! ATTAAAACTTTGTACATTAT+TGG + chr7_4:1470891-1470910 Msa1134840:intron 15.0%
!! ATTAAAAGCAAAACATAAAT+GGG - chr7_4:1471583-1471602 None:intergenic 15.0%
!! AATTAAAAGCAAAACATAAA+TGG - chr7_4:1471584-1471603 None:intergenic 15.0%
!! GGAAAAAAAAAATTGTATAC+TGG - chr7_4:1470474-1470493 None:intergenic 20.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr7_4:1470521-1470540 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr7_4:1470544-1470563 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr7_4:1470550-1470569 None:intergenic 20.0%
!!! GATTTCATGTTTTTTTCATA+AGG + chr7_4:1470936-1470955 Msa1134840:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr7_4:1471020-1471039 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr7_4:1471021-1471040 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr7_4:1471031-1471050 Msa1134840:intron 20.0%
!!! TAATTTCCATTTCTTTTTCA+AGG + chr7_4:1471599-1471618 Msa1134840:three_prime_UTR 20.0%
!!! TGTTTTTATATTTCTGTCTT+TGG + chr7_4:1471638-1471657 Msa1134840:three_prime_UTR 20.0%
!! TTAAGAGTTAATGAATGAAA+TGG + chr7_4:1471685-1471704 Msa1134840:three_prime_UTR 20.0%
!!! TAACCATTTTTAAGTAACTT+GGG - chr7_4:1471721-1471740 None:intergenic 20.0%
!! GGAAAAAAAAAATTGTATAC+TGG - chr7_4:1470474-1470493 None:intergenic 20.0%
!! ATTGTGAAAATGATAAACAT+TGG - chr7_4:1470521-1470540 None:intergenic 20.0%
!!! ATTAATTATACCAATGGTTT+TGG - chr7_4:1470544-1470563 None:intergenic 20.0%
!! TTTCTGATTAATTATACCAA+TGG - chr7_4:1470550-1470569 None:intergenic 20.0%
!!! GATTTCATGTTTTTTTCATA+AGG + chr7_4:1470936-1470955 Msa1134840:intron 20.0%
!! ATGTACAAAAGATTAAGTTA+GGG - chr7_4:1471020-1471039 None:intergenic 20.0%
!! AATGTACAAAAGATTAAGTT+AGG - chr7_4:1471021-1471040 None:intergenic 20.0%
!! TTTGTACATTACTACTATAT+AGG + chr7_4:1471031-1471050 Msa1134840:intron 20.0%
!!! TAATTTCCATTTCTTTTTCA+AGG + chr7_4:1471599-1471618 Msa1134840:three_prime_UTR 20.0%
!!! TGTTTTTATATTTCTGTCTT+TGG + chr7_4:1471638-1471657 Msa1134840:three_prime_UTR 20.0%
!! TTAAGAGTTAATGAATGAAA+TGG + chr7_4:1471685-1471704 Msa1134840:three_prime_UTR 20.0%
!!! TAACCATTTTTAAGTAACTT+GGG - chr7_4:1471721-1471740 None:intergenic 20.0%
!! GCTTAATAAAATTTTGCATG+CGG - chr7_4:1470997-1471016 None:intergenic 25.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr7_4:1471019-1471038 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_4:1471129-1471148 Msa1134840:CDS 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr7_4:1471277-1471296 Msa1134840:intron 25.0%
! ACATTTCCTTGAAAAAGAAA+TGG - chr7_4:1471608-1471627 None:intergenic 25.0%
! ATTCCCAAGTTACTTAAAAA+TGG + chr7_4:1471715-1471734 Msa1134840:three_prime_UTR 25.0%
!!! GTAACCATTTTTAAGTAACT+TGG - chr7_4:1471722-1471741 None:intergenic 25.0%
! TTAAAAATGGTTACCTTGTT+TGG + chr7_4:1471728-1471747 Msa1134840:three_prime_UTR 25.0%
!! GCTTAATAAAATTTTGCATG+CGG - chr7_4:1470997-1471016 None:intergenic 25.0%
! TGTACAAAAGATTAAGTTAG+GGG - chr7_4:1471019-1471038 None:intergenic 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_4:1471129-1471148 Msa1134840:CDS 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr7_4:1471277-1471296 Msa1134840:intron 25.0%
! ACATTTCCTTGAAAAAGAAA+TGG - chr7_4:1471608-1471627 None:intergenic 25.0%
! ATTCCCAAGTTACTTAAAAA+TGG + chr7_4:1471715-1471734 Msa1134840:three_prime_UTR 25.0%
!!! GTAACCATTTTTAAGTAACT+TGG - chr7_4:1471722-1471741 None:intergenic 25.0%
! TTAAAAATGGTTACCTTGTT+TGG + chr7_4:1471728-1471747 Msa1134840:three_prime_UTR 25.0%
CAAGTGAAGATAAGATTAGT+AGG + chr7_4:1470404-1470423 Msa1134840:five_prime_UTR 30.0%
!!! TTTTTTTTCCCAATCTCATG+TGG + chr7_4:1470484-1470503 Msa1134840:five_prime_UTR 30.0%
CATATTAACCACATGAGATT+GGG - chr7_4:1470495-1470514 None:intergenic 30.0%
! TTTTCACAATCCAAAACCAT+TGG + chr7_4:1470531-1470550 Msa1134840:five_prime_UTR 30.0%
CCTTGTTGATCTTTGTAATT+GGG - chr7_4:1470769-1470788 None:intergenic 30.0%
TCCTTGTTGATCTTTGTAAT+TGG - chr7_4:1470770-1470789 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr7_4:1471036-1471055 Msa1134840:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_4:1471133-1471152 Msa1134840:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_4:1471134-1471153 Msa1134840:CDS 30.0%
TTGCAAGTAATATTAGACCT+CGG - chr7_4:1471186-1471205 None:intergenic 30.0%
AAGTTCATTGCATTGGAATT+TGG + chr7_4:1471539-1471558 Msa1134840:exon 30.0%
CAAGTGAAGATAAGATTAGT+AGG + chr7_4:1470404-1470423 Msa1134840:five_prime_UTR 30.0%
!!! TTTTTTTTCCCAATCTCATG+TGG + chr7_4:1470484-1470503 Msa1134840:five_prime_UTR 30.0%
CATATTAACCACATGAGATT+GGG - chr7_4:1470495-1470514 None:intergenic 30.0%
! TTTTCACAATCCAAAACCAT+TGG + chr7_4:1470531-1470550 Msa1134840:five_prime_UTR 30.0%
CCTTGTTGATCTTTGTAATT+GGG - chr7_4:1470769-1470788 None:intergenic 30.0%
TCCTTGTTGATCTTTGTAAT+TGG - chr7_4:1470770-1470789 None:intergenic 30.0%
ACATTACTACTATATAGGTG+TGG + chr7_4:1471036-1471055 Msa1134840:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_4:1471133-1471152 Msa1134840:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_4:1471134-1471153 Msa1134840:CDS 30.0%
TTGCAAGTAATATTAGACCT+CGG - chr7_4:1471186-1471205 None:intergenic 30.0%
AAGTTCATTGCATTGGAATT+TGG + chr7_4:1471539-1471558 Msa1134840:exon 30.0%
CATAGTGGTGCATTATGATA+AGG + chr7_4:1470448-1470467 Msa1134840:five_prime_UTR 35.0%
CCATATTAACCACATGAGAT+TGG - chr7_4:1470496-1470515 None:intergenic 35.0%
CCAATCTCATGTGGTTAATA+TGG + chr7_4:1470493-1470512 Msa1134840:five_prime_UTR 35.0%
CCCAATTACAAAGATCAACA+AGG + chr7_4:1470766-1470785 Msa1134840:CDS 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr7_4:1470791-1470810 Msa1134840:CDS 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1471065-1471084 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_4:1471138-1471157 Msa1134840:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_4:1471139-1471158 Msa1134840:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_4:1471404-1471423 None:intergenic 35.0%
GTCTACTAAGTTCATTGCAT+TGG + chr7_4:1471532-1471551 Msa1134840:exon 35.0%
CATAGTGGTGCATTATGATA+AGG + chr7_4:1470448-1470467 Msa1134840:five_prime_UTR 35.0%
CCATATTAACCACATGAGAT+TGG - chr7_4:1470496-1470515 None:intergenic 35.0%
CCAATCTCATGTGGTTAATA+TGG + chr7_4:1470493-1470512 Msa1134840:five_prime_UTR 35.0%
CCCAATTACAAAGATCAACA+AGG + chr7_4:1470766-1470785 Msa1134840:CDS 35.0%
ATTACCTCCATTACAAGCAA+TGG + chr7_4:1470791-1470810 Msa1134840:CDS 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1471065-1471084 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_4:1471138-1471157 Msa1134840:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_4:1471139-1471158 Msa1134840:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_4:1471404-1471423 None:intergenic 35.0%
GTCTACTAAGTTCATTGCAT+TGG + chr7_4:1471532-1471551 Msa1134840:exon 35.0%
AACTGTAGTTACAGCTGAAG+AGG - chr7_4:1470678-1470697 None:intergenic 40.0%
ATGGACTTGAGTCCAACAAA+TGG - chr7_4:1470737-1470756 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr7_4:1470736-1470755 Msa1134840:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_4:1470801-1470820 None:intergenic 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1471062-1471081 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1471104-1471123 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1471103-1471122 Msa1134840:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_4:1471114-1471133 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1471246-1471265 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr7_4:1471292-1471311 Msa1134840:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_4:1471337-1471356 Msa1134840:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_4:1471346-1471365 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_4:1471347-1471366 Msa1134840:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_4:1471373-1471392 Msa1134840:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_4:1471402-1471421 Msa1134840:CDS 40.0%
CAATGAACTTAGTAGACTGC+AGG - chr7_4:1471529-1471548 None:intergenic 40.0%
AACTGTAGTTACAGCTGAAG+AGG - chr7_4:1470678-1470697 None:intergenic 40.0%
ATGGACTTGAGTCCAACAAA+TGG - chr7_4:1470737-1470756 None:intergenic 40.0%
! ATTTGTTGGACTCAAGTCCA+TGG + chr7_4:1470736-1470755 Msa1134840:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_4:1470801-1470820 None:intergenic 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1471062-1471081 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1471104-1471123 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1471103-1471122 Msa1134840:CDS 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_4:1471114-1471133 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1471246-1471265 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr7_4:1471292-1471311 Msa1134840:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_4:1471337-1471356 Msa1134840:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_4:1471346-1471365 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_4:1471347-1471366 Msa1134840:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_4:1471373-1471392 Msa1134840:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_4:1471402-1471421 Msa1134840:CDS 40.0%
CAATGAACTTAGTAGACTGC+AGG - chr7_4:1471529-1471548 None:intergenic 40.0%
TCCACGTGACATTCACATAG+TGG + chr7_4:1470433-1470452 Msa1134840:five_prime_UTR 45.0%
ACCACTATGTGAATGTCACG+TGG - chr7_4:1470437-1470456 None:intergenic 45.0%
AGCTGAAGAGGAGATCATAG+AGG - chr7_4:1470666-1470685 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr7_4:1470794-1470813 Msa1134840:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr7_4:1470798-1470817 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1470814-1470833 Msa1134840:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr7_4:1471047-1471066 Msa1134840:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1471107-1471126 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1471145-1471164 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_4:1471166-1471185 Msa1134840:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_4:1471336-1471355 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_4:1471356-1471375 Msa1134840:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_4:1471388-1471407 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1471453-1471472 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1471454-1471473 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1471454-1471473 Msa1134840:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1471461-1471480 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1471468-1471487 None:intergenic 45.0%
CCAACACATGTCACCAAACA+AGG - chr7_4:1471744-1471763 None:intergenic 45.0%
! CCTTGTTTGGTGACATGTGT+TGG + chr7_4:1471741-1471760 Msa1134840:three_prime_UTR 45.0%
TCCACGTGACATTCACATAG+TGG + chr7_4:1470433-1470452 Msa1134840:five_prime_UTR 45.0%
ACCACTATGTGAATGTCACG+TGG - chr7_4:1470437-1470456 None:intergenic 45.0%
AGCTGAAGAGGAGATCATAG+AGG - chr7_4:1470666-1470685 None:intergenic 45.0%
ACCTCCATTACAAGCAATGG+TGG + chr7_4:1470794-1470813 Msa1134840:CDS 45.0%
TCCACCATTGCTTGTAATGG+AGG - chr7_4:1470798-1470817 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1470814-1470833 Msa1134840:CDS 45.0%
ATATAGGTGTGGCCTCCTAT+TGG + chr7_4:1471047-1471066 Msa1134840:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1471107-1471126 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1471145-1471164 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_4:1471166-1471185 Msa1134840:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_4:1471336-1471355 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_4:1471356-1471375 Msa1134840:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_4:1471388-1471407 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1471453-1471472 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1471454-1471473 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1471454-1471473 Msa1134840:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1471461-1471480 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1471468-1471487 None:intergenic 45.0%
CCAACACATGTCACCAAACA+AGG - chr7_4:1471744-1471763 None:intergenic 45.0%
TGTAATTGGGAAGCCAGCCA+TGG - chr7_4:1470756-1470775 None:intergenic 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1471100-1471119 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr7_4:1471226-1471245 Msa1134840:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_4:1471327-1471346 None:intergenic 50.0%
TGTAATTGGGAAGCCAGCCA+TGG - chr7_4:1470756-1470775 None:intergenic 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1471100-1471119 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr7_4:1471226-1471245 Msa1134840:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_4:1471327-1471346 None:intergenic 50.0%
TACAGTTAACCGCGCCTCGT+CGG + chr7_4:1470691-1470710 Msa1134840:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr7_4:1470740-1470759 Msa1134840:CDS 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_4:1471151-1471170 Msa1134840:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_4:1471325-1471344 Msa1134840:CDS 55.0%
TACAGTTAACCGCGCCTCGT+CGG + chr7_4:1470691-1470710 Msa1134840:CDS 55.0%
GTTGGACTCAAGTCCATGGC+TGG + chr7_4:1470740-1470759 Msa1134840:CDS 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_4:1471151-1471170 Msa1134840:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_4:1471325-1471344 Msa1134840:CDS 55.0%
AACAAATGGAGCCACCGCGC+CGG - chr7_4:1470723-1470742 None:intergenic 60.0%
AACAAATGGAGCCACCGCGC+CGG - chr7_4:1470723-1470742 None:intergenic 60.0%
CGGATTGAACCGACGAGGCG+CGG - chr7_4:1470703-1470722 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr7_4:1470701-1470720 Msa1134840:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr7_4:1470706-1470725 Msa1134840:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_4:1470722-1470741 Msa1134840:CDS 65.0%
CGGATTGAACCGACGAGGCG+CGG - chr7_4:1470703-1470722 None:intergenic 65.0%
!! CGCGCCTCGTCGGTTCAATC+CGG + chr7_4:1470701-1470720 Msa1134840:CDS 65.0%
!! CTCGTCGGTTCAATCCGGCG+CGG + chr7_4:1470706-1470725 Msa1134840:CDS 65.0%
GGCGCGGTGGCTCCATTTGT+TGG + chr7_4:1470722-1470741 Msa1134840:CDS 65.0%
CGCGCCGGATTGAACCGACG+AGG - chr7_4:1470708-1470727 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr7_4:1470709-1470728 Msa1134840:CDS 70.0%
CGCGCCGGATTGAACCGACG+AGG - chr7_4:1470708-1470727 None:intergenic 70.0%
! GTCGGTTCAATCCGGCGCGG+TGG + chr7_4:1470709-1470728 Msa1134840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 1470389 1471763 1470389 ID=Msa1134840;Name=Msa1134840
chr7_4 mRNA 1470389 1471763 1470389 ID=Msa1134840-mRNA-1;Parent=Msa1134840;Name=Msa1134840-mRNA-1;_AED=0.38;_eAED=0.38;_QI=267|1|1|1|1|1|3|223|181
chr7_4 exon 1470389 1470835 1470389 ID=Msa1134840-mRNA-1:exon:533;Parent=Msa1134840-mRNA-1
chr7_4 exon 1471053 1471187 1471053 ID=Msa1134840-mRNA-1:exon:534;Parent=Msa1134840-mRNA-1
chr7_4 exon 1471310 1471763 1471310 ID=Msa1134840-mRNA-1:exon:535;Parent=Msa1134840-mRNA-1
chr7_4 five_prime_UTR 1470389 1470655 1470389 ID=Msa1134840-mRNA-1:five_prime_utr;Parent=Msa1134840-mRNA-1
chr7_4 CDS 1470656 1470835 1470656 ID=Msa1134840-mRNA-1:cds;Parent=Msa1134840-mRNA-1
chr7_4 CDS 1471053 1471187 1471053 ID=Msa1134840-mRNA-1:cds;Parent=Msa1134840-mRNA-1
chr7_4 CDS 1471310 1471540 1471310 ID=Msa1134840-mRNA-1:cds;Parent=Msa1134840-mRNA-1
chr7_4 three_prime_UTR 1471541 1471763 1471541 ID=Msa1134840-mRNA-1:three_prime_utr;Parent=Msa1134840-mRNA-1
Gene Sequence

>Msa1134840

ATGGCTGCCTCTATGATCTCCTCTTCAGCTGTAACTACAGTTAACCGCGCCTCGTCGGTTCAATCCGGCGCGGTGGCTCCATTTGTTGGACTCAAGTCCATGGCTGGCTTCCCAATTACAAAGATCAACAAGGACATTACCTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCGAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1134840

MAASMISSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPITKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*