AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0868520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868520 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 3.95e-108 305
Msa0868520 MtrunA17_Chr6g0457461 81.111 180 13 2 1 162 1 177 8.98e-104 294
Msa0868520 MtrunA17_Chr7g0215381 72.674 172 28 2 9 162 11 181 3.96e-89 258
Msa0868520 MtrunA17_Chr7g0215421 73.256 172 27 2 9 162 11 181 5.75e-89 257
Msa0868520 MtrunA17_Chr7g0215361 73.099 171 27 2 10 162 12 181 1.29e-88 256
Msa0868520 MtrunA17_Chr7g0215351 72.674 172 28 2 9 162 11 181 1.65e-88 256
Msa0868520 MtrunA17_Chr7g0215431 73.099 171 27 2 10 162 12 181 3.14e-88 255
Msa0868520 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.10e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868520 AT5G38410.1 66.480 179 38 2 2 162 4 178 4.65e-84 245
Msa0868520 AT1G67090.1 65.922 179 39 2 2 162 4 178 6.68e-84 244
Msa0868520 AT5G38430.1 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0868520 AT5G38430.2 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0868520 AT5G38410.3 64.674 184 38 2 2 162 4 183 2.64e-83 243
Msa0868520 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.97e-82 241
Msa0868520 AT5G38410.2 66.860 172 42 2 2 162 4 171 7.56e-82 239
Msa0868520 AT1G67090.2 68.132 91 25 1 2 92 4 90 2.07e-38 128

Find 77 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGGTCTTCTTGGTAAC+TGG 0.200361 6_1:-2113603 None:intergenic
TATGATTAATTATAATTTAT+AGG 0.238559 6_1:+2113228 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.259020 6_1:-2113610 None:intergenic
GGGAAATTAAAGAGTAATAC+TGG 0.278829 6_1:-2114916 None:intergenic
AGAGTAATACTGGGTTCTTT+TGG 0.290685 6_1:-2114906 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_1:-2114735 None:intergenic
GTATTACTCTTTAATTTCCC+TGG 0.338836 6_1:+2114919 Msa0868520:three_prime_UTR
TCAAACATGTATTTCACCTT+TGG 0.342691 6_1:+2113387 Msa0868520:five_prime_UTR
GATACTATGACGGACGTTAC+TGG 0.345500 6_1:+2114523 Msa0868520:CDS
ATATGTATTCGGATTTCCTT+TGG 0.353083 6_1:+2114833 Msa0868520:three_prime_UTR
GATTCATTCATCAGAATCAT+TGG 0.353791 6_1:+2114630 Msa0868520:CDS
AAATATTGATGCAATCTATA+AGG 0.355302 6_1:-2113254 None:intergenic
TCTATATTGAAGTTATTTGC+AGG 0.365574 6_1:+2114955 Msa0868520:three_prime_UTR
ATGATTCTGATGAATGAATC+TGG 0.373664 6_1:-2114627 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_1:-2113906 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_1:+2114578 Msa0868520:CDS
CACCGTTAGCCGCGCCTCCT+TGG 0.395494 6_1:+2113527 Msa0868520:CDS
CAACATAGTTTATTATTGAT+AGG 0.416694 6_1:-2114875 None:intergenic
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_1:+2114549 Msa0868520:CDS
TTAGAGTGGACCCTTTAGAT+AGG 0.419452 6_1:+2113275 Msa0868520:five_prime_UTR
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_1:+2113947 Msa0868520:CDS
TTTCCTTTGGAAATTATGAA+TGG 0.422475 6_1:+2114846 Msa0868520:three_prime_UTR
CACAAAAGTACCTATCTAAA+GGG 0.424073 6_1:-2113285 None:intergenic
TATTACTCTTTAATTTCCCT+GGG 0.434541 6_1:+2114920 Msa0868520:three_prime_UTR
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_1:-2113949 None:intergenic
AGGATTTGAGACCGGTGAAT+GGG 0.457658 6_1:-2113569 None:intergenic
ACAAACAAAGTAGTAATAAA+GGG 0.462386 6_1:-2114734 None:intergenic
TCACAAAAGTACCTATCTAA+AGG 0.465075 6_1:-2113286 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.472739 6_1:+2113576 Msa0868520:CDS
TGTTGGTCTTCTTGGTAACT+GGG 0.488557 6_1:-2113602 None:intergenic
AACTTAGTTGCCCCATTCAC+CGG 0.491052 6_1:+2113558 Msa0868520:CDS
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_1:+2114501 Msa0868520:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_1:-2113634 None:intergenic
TGCCAAGGAGGCGCGGCTAA+CGG 0.502121 6_1:-2113529 None:intergenic
GAGGATTTGAGACCGGTGAA+TGG 0.506111 6_1:-2113570 None:intergenic
GGTGAATGGGGCAACTAAGT+TGG 0.512162 6_1:-2113556 None:intergenic
TTGTATAGTTTGAGTAGAGG+AGG 0.514696 6_1:-2113350 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_1:-2113637 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_1:-2113903 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_1:-2113619 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_1:+2113953 Msa0868520:CDS
CTATATTGAAGTTATTTGCA+GGG 0.547216 6_1:+2114956 Msa0868520:three_prime_UTR
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_1:-2113950 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_1:-2114519 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_1:-2114500 None:intergenic
AACTAAGTTGGCTTGTGCCA+AGG 0.563759 6_1:-2113544 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_1:+2113633 Msa0868520:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_1:-2113941 None:intergenic
GATTGCATCAATATTTAGAG+TGG 0.571992 6_1:+2113261 Msa0868520:five_prime_UTR
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_1:-2113577 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_1:-2113948 None:intergenic
CATCCATTCATAATTTCCAA+AGG 0.578098 6_1:-2114849 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_1:-2114561 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_1:-2114763 None:intergenic
TGGCTTGTGCCAAGGAGGCG+CGG 0.597288 6_1:-2113536 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_1:+2113891 Msa0868520:intron
AGAAGCAAAAGTTCAGCACT+TGG 0.603924 6_1:+2113445 Msa0868520:five_prime_UTR
ATGTTGTATAGTTTGAGTAG+AGG 0.605108 6_1:-2113353 None:intergenic
CAAGGAGGCGCGGCTAACGG+TGG 0.605314 6_1:-2113526 None:intergenic
CAAACTTGCTATATATCCAA+AGG 0.613113 6_1:-2113403 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_1:+2113630 Msa0868520:CDS
GCGGCTAACGGTGGTGACTG+CGG 0.617493 6_1:-2113517 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_1:-2114626 None:intergenic
GGATTTGAGACCGGTGAATG+GGG 0.628298 6_1:-2113568 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_1:+2113653 Msa0868520:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_1:-2114574 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_1:-2114512 None:intergenic
GGAAATTAAAGAGTAATACT+GGG 0.639491 6_1:-2114915 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_1:-2113945 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_1:-2114509 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_1:-2114731 None:intergenic
GGTAACTGGGAAACCAGCTG+AGG 0.671464 6_1:-2113589 None:intergenic
TAAGTTGGCTTGTGCCAAGG+AGG 0.671585 6_1:-2113541 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_1:+2114535 Msa0868520:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_1:+2114513 Msa0868520:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_1:+2114532 Msa0868520:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_1:+2113938 Msa0868520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_1:2113715-2113734 None:intergenic 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_1:2113869-2113888 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_1:2113870-2113889 None:intergenic 10.0%
!! AATAAATATATACAATAAAG+TGG - chr6_1:2114153-2114172 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_1:2114224-2114243 None:intergenic 10.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_1:2113714-2113733 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_1:2113716-2113735 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_1:2113762-2113781 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_1:2114057-2114076 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_1:2114262-2114281 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_1:2114786-2114805 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_1:2114787-2114806 None:intergenic 15.0%
!!! ATTTTTGGTTAATATGTATT+CGG + chr6_1:2114822-2114841 Msa0868520:three_prime_UTR 15.0%
!! AAATATTGATGCAATCTATA+AGG - chr6_1:2113257-2113276 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_1:2113744-2113763 Msa0868520:intron 20.0%
!! GAATGCAACAAAAAAAAAAT+TGG + chr6_1:2113800-2113819 Msa0868520:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_1:2113846-2113865 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_1:2113880-2113899 Msa0868520:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_1:2114068-2114087 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_1:2114264-2114283 Msa0868520:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_1:2114468-2114487 Msa0868520:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_1:2114705-2114724 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_1:2114737-2114756 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_1:2114738-2114757 None:intergenic 20.0%
!! CAACATAGTTTATTATTGAT+AGG - chr6_1:2114878-2114897 None:intergenic 20.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_1:2113686-2113705 None:intergenic 25.0%
!! ATTTCAGCATCTTGTATTTT+TGG + chr6_1:2114807-2114826 Msa0868520:three_prime_UTR 25.0%
!! TTTCCTTTGGAAATTATGAA+TGG + chr6_1:2114846-2114865 Msa0868520:three_prime_UTR 25.0%
! GGAAATTAAAGAGTAATACT+GGG - chr6_1:2114918-2114937 None:intergenic 25.0%
!! TATTACTCTTTAATTTCCCT+GGG + chr6_1:2114920-2114939 Msa0868520:three_prime_UTR 25.0%
! TAGAAAAAAATTTCAACCCA+GGG - chr6_1:2114939-2114958 None:intergenic 25.0%
! ATAGAAAAAAATTTCAACCC+AGG - chr6_1:2114940-2114959 None:intergenic 25.0%
! TCTATATTGAAGTTATTTGC+AGG + chr6_1:2114955-2114974 Msa0868520:three_prime_UTR 25.0%
! CTATATTGAAGTTATTTGCA+GGG + chr6_1:2114956-2114975 Msa0868520:three_prime_UTR 25.0%
GATTGCATCAATATTTAGAG+TGG + chr6_1:2113261-2113280 Msa0868520:five_prime_UTR 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_1:2113288-2113307 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_1:2113289-2113308 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_1:2113356-2113375 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_1:2113387-2113406 Msa0868520:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_1:2113406-2113425 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_1:2114093-2114112 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_1:2114131-2114150 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_1:2114271-2114290 Msa0868520:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_1:2114629-2114648 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_1:2114630-2114649 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_1:2114630-2114649 Msa0868520:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_1:2114734-2114753 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_1:2114766-2114785 None:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG + chr6_1:2114833-2114852 Msa0868520:three_prime_UTR 30.0%
CATCCATTCATAATTTCCAA+AGG - chr6_1:2114852-2114871 None:intergenic 30.0%
GGGAAATTAAAGAGTAATAC+TGG - chr6_1:2114919-2114938 None:intergenic 30.0%
! GTATTACTCTTTAATTTCCC+TGG + chr6_1:2114919-2114938 Msa0868520:three_prime_UTR 30.0%
TCTGATACTGTGAAAAATTG+CGG + chr6_1:2114995-2115014 Msa0868520:three_prime_UTR 30.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_1:2113292-2113311 Msa0868520:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_1:2113353-2113372 None:intergenic 35.0%
GCTGAGTAATTGAGCAAAAA+TGG + chr6_1:2113479-2113498 Msa0868520:exon 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_1:2113613-2113632 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_1:2113622-2113641 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_1:2113692-2113711 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_1:2113973-2113992 Msa0868520:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_1:2113977-2113996 Msa0868520:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_1:2113978-2113997 Msa0868520:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_1:2114011-2114030 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_1:2114010-2114029 Msa0868520:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_1:2114578-2114597 Msa0868520:CDS 35.0%
! AGAGTAATACTGGGTTCTTT+TGG - chr6_1:2114909-2114928 None:intergenic 35.0%
TGAAAAATTGCGGTCAGATT+CGG + chr6_1:2115005-2115024 Msa0868520:three_prime_UTR 35.0%
TTAGAGTGGACCCTTTAGAT+AGG + chr6_1:2113275-2113294 Msa0868520:five_prime_UTR 40.0%
AGAAGCAAAAGTTCAGCACT+TGG + chr6_1:2113445-2113464 Msa0868520:five_prime_UTR 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_1:2113605-2113624 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_1:2113606-2113625 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_1:2113630-2113649 Msa0868520:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_1:2113699-2113718 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_1:2113909-2113928 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_1:2113982-2114001 Msa0868520:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_1:2114286-2114305 Msa0868520:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_1:2114310-2114329 Msa0868520:intron 40.0%
ATTCGGATTGTGTGAAGTCA+AGG - chr6_1:2114408-2114427 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_1:2114433-2114452 Msa0868520:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_1:2114434-2114453 Msa0868520:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_1:2114438-2114457 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_1:2114577-2114596 None:intergenic 40.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_1:2113547-2113566 None:intergenic 45.0%
AACTTAGTTGCCCCATTCAC+CGG + chr6_1:2113558-2113577 Msa0868520:CDS 45.0%
! AGGATTTGAGACCGGTGAAT+GGG - chr6_1:2113572-2113591 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_1:2113640-2113659 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_1:2113653-2113672 Msa0868520:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_1:2113906-2113925 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_1:2113952-2113971 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_1:2113953-2113972 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_1:2113953-2113972 Msa0868520:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_1:2113989-2114008 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_1:2113995-2114014 Msa0868520:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_1:2114365-2114384 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_1:2114384-2114403 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_1:2114425-2114444 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_1:2114515-2114534 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_1:2114513-2114532 Msa0868520:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_1:2114522-2114541 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_1:2114523-2114542 Msa0868520:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_1:2114549-2114568 Msa0868520:CDS 45.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_1:2113875-2113894 Msa0868520:intron 5.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_1:2113544-2113563 None:intergenic 50.0%
GGTGAATGGGGCAACTAAGT+TGG - chr6_1:2113559-2113578 None:intergenic 50.0%
! GGATTTGAGACCGGTGAATG+GGG - chr6_1:2113571-2113590 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+TGG - chr6_1:2113573-2113592 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_1:2113580-2113599 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_1:2113633-2113652 Msa0868520:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_1:2113637-2113656 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_1:2113891-2113910 Msa0868520:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_1:2113948-2113967 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_1:2113947-2113966 Msa0868520:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_1:2113951-2113970 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_1:2114301-2114320 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_1:2114316-2114335 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_1:2114318-2114337 Msa0868520:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_1:2114325-2114344 Msa0868520:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_1:2114376-2114395 Msa0868520:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_1:2114512-2114531 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_1:2114532-2114551 Msa0868520:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_1:2114535-2114554 Msa0868520:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_1:2114564-2114583 None:intergenic 50.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_1:2113576-2113595 Msa0868520:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_1:2113592-2113611 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_1:2113938-2113957 Msa0868520:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_1:2114503-2114522 None:intergenic 55.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_1:2113944-2113963 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_1:2114501-2114520 Msa0868520:CDS 60.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_1:2113520-2113539 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_1:2113532-2113551 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_1:2113539-2113558 None:intergenic 65.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_1:2113529-2113548 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_1:2113527-2113546 Msa0868520:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2113239 2115073 2113239 ID=Msa0868520;Name=Msa0868520
chr6_1 mRNA 2113239 2115073 2113239 ID=Msa0868520-mRNA-1;Parent=Msa0868520;Name=Msa0868520-mRNA-1;_AED=0.31;_eAED=0.31;_QI=259|0.5|0.66|1|1|1|3|357|162
chr6_1 exon 2113239 2113674 2113239 ID=Msa0868520-mRNA-1:exon:598;Parent=Msa0868520-mRNA-1
chr6_1 exon 2113897 2113977 2113897 ID=Msa0868520-mRNA-1:exon:599;Parent=Msa0868520-mRNA-1
chr6_1 exon 2114486 2115073 2114486 ID=Msa0868520-mRNA-1:exon:600;Parent=Msa0868520-mRNA-1
chr6_1 five_prime_UTR 2113239 2113497 2113239 ID=Msa0868520-mRNA-1:five_prime_utr;Parent=Msa0868520-mRNA-1
chr6_1 CDS 2113498 2113674 2113498 ID=Msa0868520-mRNA-1:cds;Parent=Msa0868520-mRNA-1
chr6_1 CDS 2113897 2113977 2113897 ID=Msa0868520-mRNA-1:cds;Parent=Msa0868520-mRNA-1
chr6_1 CDS 2114486 2114716 2114486 ID=Msa0868520-mRNA-1:cds;Parent=Msa0868520-mRNA-1
chr6_1 three_prime_UTR 2114717 2115073 2114717 ID=Msa0868520-mRNA-1:three_prime_utr;Parent=Msa0868520-mRNA-1
Gene Sequence

>Msa0868520

ATGGCTTTGATTTCTTCTGCCGCAGTCACCACCGTTAGCCGCGCCTCCTTGGCACAAGCCAACTTAGTTGCCCCATTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTTACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0868520

MALISSAAVTTVSRASLAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*