AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978560 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 3.95e-108 305
Msa0978560 MtrunA17_Chr6g0457461 81.111 180 13 2 1 162 1 177 8.98e-104 294
Msa0978560 MtrunA17_Chr7g0215381 72.674 172 28 2 9 162 11 181 3.96e-89 258
Msa0978560 MtrunA17_Chr7g0215421 73.256 172 27 2 9 162 11 181 5.75e-89 257
Msa0978560 MtrunA17_Chr7g0215361 73.099 171 27 2 10 162 12 181 1.29e-88 256
Msa0978560 MtrunA17_Chr7g0215351 72.674 172 28 2 9 162 11 181 1.65e-88 256
Msa0978560 MtrunA17_Chr7g0215431 73.099 171 27 2 10 162 12 181 3.14e-88 255
Msa0978560 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.10e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978560 AT5G38410.1 66.480 179 38 2 2 162 4 178 4.65e-84 245
Msa0978560 AT1G67090.1 65.922 179 39 2 2 162 4 178 6.68e-84 244
Msa0978560 AT5G38430.1 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0978560 AT5G38430.2 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0978560 AT5G38410.3 64.674 184 38 2 2 162 4 183 2.64e-83 243
Msa0978560 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.97e-82 241
Msa0978560 AT5G38410.2 66.860 172 42 2 2 162 4 171 7.56e-82 239
Msa0978560 AT1G67090.2 68.132 91 25 1 2 92 4 90 2.07e-38 128

Find 77 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGGTCTTCTTGGTAAC+TGG 0.200361 6_4:-14621699 None:intergenic
TATGATTAATTATAATTTAT+AGG 0.238559 6_4:+14621324 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.259020 6_4:-14621706 None:intergenic
GGGAAATTAAAGAGTAATAC+TGG 0.278829 6_4:-14623012 None:intergenic
AGAGTAATACTGGGTTCTTT+TGG 0.290685 6_4:-14623002 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_4:-14622831 None:intergenic
GTATTACTCTTTAATTTCCC+TGG 0.338836 6_4:+14623015 Msa0978560:three_prime_UTR
TCAAACATGTATTTCACCTT+TGG 0.342691 6_4:+14621483 Msa0978560:five_prime_UTR
GATACTATGACGGACGTTAC+TGG 0.345500 6_4:+14622619 Msa0978560:CDS
ATATGTATTCGGATTTCCTT+TGG 0.353083 6_4:+14622929 Msa0978560:three_prime_UTR
GATTCATTCATCAGAATCAT+TGG 0.353791 6_4:+14622726 Msa0978560:CDS
AAATATTGATGCAATCTATA+AGG 0.355302 6_4:-14621350 None:intergenic
TCTATATTGAAGTTATTTGC+AGG 0.365574 6_4:+14623051 Msa0978560:three_prime_UTR
ATGATTCTGATGAATGAATC+TGG 0.373664 6_4:-14622723 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_4:-14622002 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_4:+14622674 Msa0978560:CDS
CACCGTTAGCCGCGCCTCCT+TGG 0.395494 6_4:+14621623 Msa0978560:CDS
CAACATAGTTTATTATTGAT+AGG 0.416694 6_4:-14622971 None:intergenic
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_4:+14622645 Msa0978560:CDS
TTAGAGTGGACCCTTTAGAT+AGG 0.419452 6_4:+14621371 Msa0978560:five_prime_UTR
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_4:+14622043 Msa0978560:CDS
TTTCCTTTGGAAATTATGAA+TGG 0.422475 6_4:+14622942 Msa0978560:three_prime_UTR
CACAAAAGTACCTATCTAAA+GGG 0.424073 6_4:-14621381 None:intergenic
TATTACTCTTTAATTTCCCT+GGG 0.434541 6_4:+14623016 Msa0978560:three_prime_UTR
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_4:-14622045 None:intergenic
AGGATTTGAGACCGGTGAAT+GGG 0.457658 6_4:-14621665 None:intergenic
ACAAACAAAGTAGTAATAAA+GGG 0.462386 6_4:-14622830 None:intergenic
TCACAAAAGTACCTATCTAA+AGG 0.465075 6_4:-14621382 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.472739 6_4:+14621672 Msa0978560:CDS
TGTTGGTCTTCTTGGTAACT+GGG 0.488557 6_4:-14621698 None:intergenic
AACTTAGTTGCCCCATTCAC+CGG 0.491052 6_4:+14621654 Msa0978560:CDS
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_4:+14622597 Msa0978560:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_4:-14621730 None:intergenic
TGCCAAGGAGGCGCGGCTAA+CGG 0.502121 6_4:-14621625 None:intergenic
GAGGATTTGAGACCGGTGAA+TGG 0.506111 6_4:-14621666 None:intergenic
GGTGAATGGGGCAACTAAGT+TGG 0.512162 6_4:-14621652 None:intergenic
TTGTATAGTTTGAGTAGAGG+AGG 0.514696 6_4:-14621446 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_4:-14621733 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_4:-14621999 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_4:-14621715 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_4:+14622049 Msa0978560:CDS
CTATATTGAAGTTATTTGCA+GGG 0.547216 6_4:+14623052 Msa0978560:three_prime_UTR
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_4:-14622046 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_4:-14622615 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_4:-14622596 None:intergenic
AACTAAGTTGGCTTGTGCCA+AGG 0.563759 6_4:-14621640 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_4:+14621729 Msa0978560:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_4:-14622037 None:intergenic
GATTGCATCAATATTTAGAG+TGG 0.571992 6_4:+14621357 Msa0978560:five_prime_UTR
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_4:-14621673 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_4:-14622044 None:intergenic
CATCCATTCATAATTTCCAA+AGG 0.578098 6_4:-14622945 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_4:-14622657 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_4:-14622859 None:intergenic
TGGCTTGTGCCAAGGAGGCG+CGG 0.597288 6_4:-14621632 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_4:+14621987 Msa0978560:intron
AGAAGCAAAAGTTCAGCACT+TGG 0.603924 6_4:+14621541 Msa0978560:five_prime_UTR
ATGTTGTATAGTTTGAGTAG+AGG 0.605108 6_4:-14621449 None:intergenic
CAAGGAGGCGCGGCTAACGG+TGG 0.605314 6_4:-14621622 None:intergenic
CAAACTTGCTATATATCCAA+AGG 0.613113 6_4:-14621499 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_4:+14621726 Msa0978560:CDS
GCGGCTAACGGTGGTGACTG+CGG 0.617493 6_4:-14621613 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_4:-14622722 None:intergenic
GGATTTGAGACCGGTGAATG+GGG 0.628298 6_4:-14621664 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_4:+14621749 Msa0978560:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_4:-14622670 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_4:-14622608 None:intergenic
GGAAATTAAAGAGTAATACT+GGG 0.639491 6_4:-14623011 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_4:-14622041 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_4:-14622605 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_4:-14622827 None:intergenic
GGTAACTGGGAAACCAGCTG+AGG 0.671464 6_4:-14621685 None:intergenic
TAAGTTGGCTTGTGCCAAGG+AGG 0.671585 6_4:-14621637 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_4:+14622631 Msa0978560:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_4:+14622609 Msa0978560:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_4:+14622628 Msa0978560:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_4:+14622034 Msa0978560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_4:14621811-14621830 None:intergenic 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_4:14621965-14621984 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_4:14621966-14621985 None:intergenic 10.0%
!! AATAAATATATACAATAAAG+TGG - chr6_4:14622249-14622268 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14622320-14622339 None:intergenic 10.0%
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_4:14621811-14621830 None:intergenic 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_4:14621965-14621984 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_4:14621966-14621985 None:intergenic 10.0%
!! AATAAATATATACAATAAAG+TGG - chr6_4:14622249-14622268 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14622320-14622339 None:intergenic 10.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_4:14621810-14621829 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_4:14621812-14621831 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_4:14621858-14621877 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_4:14622153-14622172 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14622358-14622377 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_4:14622882-14622901 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_4:14622883-14622902 None:intergenic 15.0%
!!! ATTTTTGGTTAATATGTATT+CGG + chr6_4:14622918-14622937 Msa0978560:three_prime_UTR 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_4:14621810-14621829 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_4:14621812-14621831 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_4:14621858-14621877 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_4:14622153-14622172 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14622358-14622377 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_4:14622882-14622901 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_4:14622883-14622902 None:intergenic 15.0%
!!! ATTTTTGGTTAATATGTATT+CGG + chr6_4:14622918-14622937 Msa0978560:three_prime_UTR 15.0%
!! AAATATTGATGCAATCTATA+AGG - chr6_4:14621353-14621372 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_4:14621840-14621859 Msa0978560:intron 20.0%
!! GAATGCAACAAAAAAAAAAT+TGG + chr6_4:14621896-14621915 Msa0978560:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_4:14621942-14621961 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_4:14621976-14621995 Msa0978560:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14622164-14622183 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_4:14622360-14622379 Msa0978560:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14622564-14622583 Msa0978560:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_4:14622801-14622820 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14622833-14622852 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14622834-14622853 None:intergenic 20.0%
!! CAACATAGTTTATTATTGAT+AGG - chr6_4:14622974-14622993 None:intergenic 20.0%
!! AAATATTGATGCAATCTATA+AGG - chr6_4:14621353-14621372 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_4:14621840-14621859 Msa0978560:intron 20.0%
!! GAATGCAACAAAAAAAAAAT+TGG + chr6_4:14621896-14621915 Msa0978560:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_4:14621942-14621961 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_4:14621976-14621995 Msa0978560:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14622164-14622183 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_4:14622360-14622379 Msa0978560:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14622564-14622583 Msa0978560:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_4:14622801-14622820 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14622833-14622852 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14622834-14622853 None:intergenic 20.0%
!! CAACATAGTTTATTATTGAT+AGG - chr6_4:14622974-14622993 None:intergenic 20.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_4:14621782-14621801 None:intergenic 25.0%
!! ATTTCAGCATCTTGTATTTT+TGG + chr6_4:14622903-14622922 Msa0978560:three_prime_UTR 25.0%
!! TTTCCTTTGGAAATTATGAA+TGG + chr6_4:14622942-14622961 Msa0978560:three_prime_UTR 25.0%
! GGAAATTAAAGAGTAATACT+GGG - chr6_4:14623014-14623033 None:intergenic 25.0%
!! TATTACTCTTTAATTTCCCT+GGG + chr6_4:14623016-14623035 Msa0978560:three_prime_UTR 25.0%
! TAGAAAAAAATTTCAACCCA+GGG - chr6_4:14623035-14623054 None:intergenic 25.0%
! ATAGAAAAAAATTTCAACCC+AGG - chr6_4:14623036-14623055 None:intergenic 25.0%
! TCTATATTGAAGTTATTTGC+AGG + chr6_4:14623051-14623070 Msa0978560:three_prime_UTR 25.0%
! CTATATTGAAGTTATTTGCA+GGG + chr6_4:14623052-14623071 Msa0978560:three_prime_UTR 25.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_4:14621782-14621801 None:intergenic 25.0%
!! ATTTCAGCATCTTGTATTTT+TGG + chr6_4:14622903-14622922 Msa0978560:three_prime_UTR 25.0%
!! TTTCCTTTGGAAATTATGAA+TGG + chr6_4:14622942-14622961 Msa0978560:three_prime_UTR 25.0%
! GGAAATTAAAGAGTAATACT+GGG - chr6_4:14623014-14623033 None:intergenic 25.0%
!! TATTACTCTTTAATTTCCCT+GGG + chr6_4:14623016-14623035 Msa0978560:three_prime_UTR 25.0%
! TAGAAAAAAATTTCAACCCA+GGG - chr6_4:14623035-14623054 None:intergenic 25.0%
! ATAGAAAAAAATTTCAACCC+AGG - chr6_4:14623036-14623055 None:intergenic 25.0%
! TCTATATTGAAGTTATTTGC+AGG + chr6_4:14623051-14623070 Msa0978560:three_prime_UTR 25.0%
! CTATATTGAAGTTATTTGCA+GGG + chr6_4:14623052-14623071 Msa0978560:three_prime_UTR 25.0%
GATTGCATCAATATTTAGAG+TGG + chr6_4:14621357-14621376 Msa0978560:five_prime_UTR 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_4:14621384-14621403 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_4:14621385-14621404 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_4:14621452-14621471 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_4:14621483-14621502 Msa0978560:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_4:14621502-14621521 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14622189-14622208 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_4:14622227-14622246 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_4:14622367-14622386 Msa0978560:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_4:14622725-14622744 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_4:14622726-14622745 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_4:14622726-14622745 Msa0978560:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14622830-14622849 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_4:14622862-14622881 None:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG + chr6_4:14622929-14622948 Msa0978560:three_prime_UTR 30.0%
CATCCATTCATAATTTCCAA+AGG - chr6_4:14622948-14622967 None:intergenic 30.0%
GGGAAATTAAAGAGTAATAC+TGG - chr6_4:14623015-14623034 None:intergenic 30.0%
! GTATTACTCTTTAATTTCCC+TGG + chr6_4:14623015-14623034 Msa0978560:three_prime_UTR 30.0%
TCTGATACTGTGAAAAATTG+CGG + chr6_4:14623091-14623110 Msa0978560:three_prime_UTR 30.0%
GATTGCATCAATATTTAGAG+TGG + chr6_4:14621357-14621376 Msa0978560:five_prime_UTR 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_4:14621384-14621403 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_4:14621385-14621404 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_4:14621452-14621471 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_4:14621483-14621502 Msa0978560:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_4:14621502-14621521 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14622189-14622208 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_4:14622227-14622246 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_4:14622367-14622386 Msa0978560:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_4:14622725-14622744 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_4:14622726-14622745 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_4:14622726-14622745 Msa0978560:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14622830-14622849 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_4:14622862-14622881 None:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG + chr6_4:14622929-14622948 Msa0978560:three_prime_UTR 30.0%
CATCCATTCATAATTTCCAA+AGG - chr6_4:14622948-14622967 None:intergenic 30.0%
GGGAAATTAAAGAGTAATAC+TGG - chr6_4:14623015-14623034 None:intergenic 30.0%
! GTATTACTCTTTAATTTCCC+TGG + chr6_4:14623015-14623034 Msa0978560:three_prime_UTR 30.0%
TCTGATACTGTGAAAAATTG+CGG + chr6_4:14623091-14623110 Msa0978560:three_prime_UTR 30.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_4:14621388-14621407 Msa0978560:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_4:14621449-14621468 None:intergenic 35.0%
GCTGAGTAATTGAGCAAAAA+TGG + chr6_4:14621575-14621594 Msa0978560:exon 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14621709-14621728 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14621718-14621737 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_4:14621788-14621807 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14622069-14622088 Msa0978560:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14622073-14622092 Msa0978560:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14622074-14622093 Msa0978560:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14622107-14622126 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14622106-14622125 Msa0978560:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14622674-14622693 Msa0978560:CDS 35.0%
! AGAGTAATACTGGGTTCTTT+TGG - chr6_4:14623005-14623024 None:intergenic 35.0%
TGAAAAATTGCGGTCAGATT+CGG + chr6_4:14623101-14623120 Msa0978560:three_prime_UTR 35.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_4:14621388-14621407 Msa0978560:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_4:14621449-14621468 None:intergenic 35.0%
GCTGAGTAATTGAGCAAAAA+TGG + chr6_4:14621575-14621594 Msa0978560:exon 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14621709-14621728 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14621718-14621737 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_4:14621788-14621807 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14622069-14622088 Msa0978560:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14622073-14622092 Msa0978560:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14622074-14622093 Msa0978560:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14622107-14622126 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14622106-14622125 Msa0978560:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14622674-14622693 Msa0978560:CDS 35.0%
! AGAGTAATACTGGGTTCTTT+TGG - chr6_4:14623005-14623024 None:intergenic 35.0%
TGAAAAATTGCGGTCAGATT+CGG + chr6_4:14623101-14623120 Msa0978560:three_prime_UTR 35.0%
TTAGAGTGGACCCTTTAGAT+AGG + chr6_4:14621371-14621390 Msa0978560:five_prime_UTR 40.0%
AGAAGCAAAAGTTCAGCACT+TGG + chr6_4:14621541-14621560 Msa0978560:five_prime_UTR 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_4:14621701-14621720 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_4:14621702-14621721 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14621726-14621745 Msa0978560:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_4:14621795-14621814 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14622005-14622024 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14622078-14622097 Msa0978560:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14622382-14622401 Msa0978560:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14622406-14622425 Msa0978560:intron 40.0%
ATTCGGATTGTGTGAAGTCA+AGG - chr6_4:14622504-14622523 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_4:14622529-14622548 Msa0978560:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_4:14622530-14622549 Msa0978560:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_4:14622534-14622553 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14622673-14622692 None:intergenic 40.0%
TTAGAGTGGACCCTTTAGAT+AGG + chr6_4:14621371-14621390 Msa0978560:five_prime_UTR 40.0%
AGAAGCAAAAGTTCAGCACT+TGG + chr6_4:14621541-14621560 Msa0978560:five_prime_UTR 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_4:14621701-14621720 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_4:14621702-14621721 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14621726-14621745 Msa0978560:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_4:14621795-14621814 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14622005-14622024 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14622078-14622097 Msa0978560:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14622382-14622401 Msa0978560:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14622406-14622425 Msa0978560:intron 40.0%
ATTCGGATTGTGTGAAGTCA+AGG - chr6_4:14622504-14622523 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_4:14622529-14622548 Msa0978560:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_4:14622530-14622549 Msa0978560:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_4:14622534-14622553 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14622673-14622692 None:intergenic 40.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_4:14621643-14621662 None:intergenic 45.0%
AACTTAGTTGCCCCATTCAC+CGG + chr6_4:14621654-14621673 Msa0978560:CDS 45.0%
! AGGATTTGAGACCGGTGAAT+GGG - chr6_4:14621668-14621687 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14621736-14621755 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14621749-14621768 Msa0978560:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14622002-14622021 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14622048-14622067 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14622049-14622068 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14622049-14622068 Msa0978560:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14622085-14622104 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14622091-14622110 Msa0978560:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_4:14622461-14622480 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_4:14622480-14622499 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_4:14622521-14622540 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14622611-14622630 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14622609-14622628 Msa0978560:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14622618-14622637 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14622619-14622638 Msa0978560:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14622645-14622664 Msa0978560:CDS 45.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_4:14621643-14621662 None:intergenic 45.0%
AACTTAGTTGCCCCATTCAC+CGG + chr6_4:14621654-14621673 Msa0978560:CDS 45.0%
! AGGATTTGAGACCGGTGAAT+GGG - chr6_4:14621668-14621687 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14621736-14621755 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14621749-14621768 Msa0978560:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14622002-14622021 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14622048-14622067 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14622049-14622068 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14622049-14622068 Msa0978560:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14622085-14622104 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14622091-14622110 Msa0978560:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_4:14622461-14622480 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_4:14622480-14622499 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_4:14622521-14622540 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14622611-14622630 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14622609-14622628 Msa0978560:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14622618-14622637 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14622619-14622638 Msa0978560:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14622645-14622664 Msa0978560:CDS 45.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_4:14621971-14621990 Msa0978560:intron 5.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_4:14621971-14621990 Msa0978560:intron 5.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_4:14621640-14621659 None:intergenic 50.0%
GGTGAATGGGGCAACTAAGT+TGG - chr6_4:14621655-14621674 None:intergenic 50.0%
! GGATTTGAGACCGGTGAATG+GGG - chr6_4:14621667-14621686 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+TGG - chr6_4:14621669-14621688 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14621676-14621695 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14621729-14621748 Msa0978560:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14621733-14621752 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14621987-14622006 Msa0978560:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14622044-14622063 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14622043-14622062 Msa0978560:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14622047-14622066 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14622397-14622416 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14622412-14622431 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14622414-14622433 Msa0978560:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14622421-14622440 Msa0978560:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_4:14622472-14622491 Msa0978560:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14622608-14622627 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14622628-14622647 Msa0978560:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14622631-14622650 Msa0978560:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14622660-14622679 None:intergenic 50.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_4:14621640-14621659 None:intergenic 50.0%
GGTGAATGGGGCAACTAAGT+TGG - chr6_4:14621655-14621674 None:intergenic 50.0%
! GGATTTGAGACCGGTGAATG+GGG - chr6_4:14621667-14621686 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+TGG - chr6_4:14621669-14621688 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14621676-14621695 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14621729-14621748 Msa0978560:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14621733-14621752 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14621987-14622006 Msa0978560:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14622044-14622063 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14622043-14622062 Msa0978560:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14622047-14622066 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14622397-14622416 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14622412-14622431 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14622414-14622433 Msa0978560:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14622421-14622440 Msa0978560:intron 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_4:14622472-14622491 Msa0978560:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14622608-14622627 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14622628-14622647 Msa0978560:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14622631-14622650 Msa0978560:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14622660-14622679 None:intergenic 50.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14621672-14621691 Msa0978560:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_4:14621688-14621707 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14622034-14622053 Msa0978560:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14622599-14622618 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14621672-14621691 Msa0978560:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_4:14621688-14621707 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14622034-14622053 Msa0978560:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14622599-14622618 None:intergenic 55.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14622040-14622059 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14622597-14622616 Msa0978560:CDS 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14622040-14622059 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14622597-14622616 Msa0978560:CDS 60.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_4:14621616-14621635 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_4:14621628-14621647 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_4:14621635-14621654 None:intergenic 65.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_4:14621616-14621635 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_4:14621628-14621647 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_4:14621635-14621654 None:intergenic 65.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_4:14621625-14621644 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_4:14621623-14621642 Msa0978560:CDS 70.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_4:14621625-14621644 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_4:14621623-14621642 Msa0978560:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 14621335 14623169 14621335 ID=Msa0978560;Name=Msa0978560
chr6_4 mRNA 14621335 14623169 14621335 ID=Msa0978560-mRNA-1;Parent=Msa0978560;Name=Msa0978560-mRNA-1;_AED=0.31;_eAED=0.31;_QI=259|0.5|0.66|1|1|1|3|357|162
chr6_4 exon 14621335 14621770 14621335 ID=Msa0978560-mRNA-1:exon:4780;Parent=Msa0978560-mRNA-1
chr6_4 exon 14621993 14622073 14621993 ID=Msa0978560-mRNA-1:exon:4781;Parent=Msa0978560-mRNA-1
chr6_4 exon 14622582 14623169 14622582 ID=Msa0978560-mRNA-1:exon:4782;Parent=Msa0978560-mRNA-1
chr6_4 five_prime_UTR 14621335 14621593 14621335 ID=Msa0978560-mRNA-1:five_prime_utr;Parent=Msa0978560-mRNA-1
chr6_4 CDS 14621594 14621770 14621594 ID=Msa0978560-mRNA-1:cds;Parent=Msa0978560-mRNA-1
chr6_4 CDS 14621993 14622073 14621993 ID=Msa0978560-mRNA-1:cds;Parent=Msa0978560-mRNA-1
chr6_4 CDS 14622582 14622812 14622582 ID=Msa0978560-mRNA-1:cds;Parent=Msa0978560-mRNA-1
chr6_4 three_prime_UTR 14622813 14623169 14622813 ID=Msa0978560-mRNA-1:three_prime_utr;Parent=Msa0978560-mRNA-1
Gene Sequence

>Msa0978560

ATGGCTTTGATTTCTTCTGCCGCAGTCACCACCGTTAGCCGCGCCTCCTTGGCACAAGCCAACTTAGTTGCCCCATTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTTACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0978560

MALISSAAVTTVSRASLAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*