AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0868510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868510 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 3.95e-108 305
Msa0868510 MtrunA17_Chr6g0457461 81.111 180 13 2 1 162 1 177 8.98e-104 294
Msa0868510 MtrunA17_Chr7g0215381 72.674 172 28 2 9 162 11 181 3.96e-89 258
Msa0868510 MtrunA17_Chr7g0215421 73.256 172 27 2 9 162 11 181 5.75e-89 257
Msa0868510 MtrunA17_Chr7g0215361 73.099 171 27 2 10 162 12 181 1.29e-88 256
Msa0868510 MtrunA17_Chr7g0215351 72.674 172 28 2 9 162 11 181 1.65e-88 256
Msa0868510 MtrunA17_Chr7g0215431 73.099 171 27 2 10 162 12 181 3.14e-88 255
Msa0868510 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.10e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0868510 AT5G38410.1 66.480 179 38 2 2 162 4 178 4.65e-84 245
Msa0868510 AT1G67090.1 65.922 179 39 2 2 162 4 178 6.68e-84 244
Msa0868510 AT5G38430.1 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0868510 AT5G38430.2 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0868510 AT5G38410.3 64.674 184 38 2 2 162 4 183 2.64e-83 243
Msa0868510 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.97e-82 241
Msa0868510 AT5G38410.2 66.860 172 42 2 2 162 4 171 7.56e-82 239
Msa0868510 AT1G67090.2 68.132 91 25 1 2 92 4 90 2.07e-38 128

Find 55 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGGTCTTCTTGGTAAC+TGG 0.200361 6_1:-2109898 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.259020 6_1:-2109905 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_1:-2111048 None:intergenic
GATACTATGACGGACGTTAC+TGG 0.345500 6_1:+2110836 Msa0868510:CDS
GATTCATTCATCAGAATCAT+TGG 0.353791 6_1:+2110943 Msa0868510:CDS
ATGATTCTGATGAATGAATC+TGG 0.373664 6_1:-2110940 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_1:-2110219 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_1:+2110891 Msa0868510:CDS
CACCGTTAGCCGCGCCTCCT+TGG 0.395494 6_1:+2109822 Msa0868510:CDS
AGGATTTGAGACCGGTGAAC+GGG 0.405433 6_1:-2109864 None:intergenic
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_1:+2110862 Msa0868510:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_1:+2110260 Msa0868510:CDS
AACTTAGTTGCCCCGTTCAC+CGG 0.452141 6_1:+2109853 Msa0868510:CDS
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_1:-2110262 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.471949 6_1:+2109871 Msa0868510:CDS
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_1:-2111047 None:intergenic
TGTTGGTCTTCTTGGTAACT+GGG 0.488557 6_1:-2109897 None:intergenic
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_1:+2110814 Msa0868510:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_1:-2109929 None:intergenic
TGCCAAGGAGGCGCGGCTAA+CGG 0.502121 6_1:-2109824 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_1:-2109932 None:intergenic
GGTGAACGGGGCAACTAAGT+TGG 0.527020 6_1:-2109851 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_1:-2110216 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_1:-2109914 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_1:+2110266 Msa0868510:CDS
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_1:-2110263 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_1:-2110832 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_1:-2110813 None:intergenic
AACTAAGTTGGCTTGTGCCA+AGG 0.563759 6_1:-2109839 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_1:+2109928 Msa0868510:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_1:-2110254 None:intergenic
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_1:-2109872 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_1:-2110261 None:intergenic
GAGGATTTGAGACCGGTGAA+CGG 0.588658 6_1:-2109865 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_1:-2110874 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_1:-2111076 None:intergenic
TGGCTTGTGCCAAGGAGGCG+CGG 0.597288 6_1:-2109831 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_1:+2110204 Msa0868510:intron
CAAGGAGGCGCGGCTAACGG+TGG 0.605314 6_1:-2109821 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_1:+2109925 Msa0868510:CDS
GCGGCTAACGGTGGTGACTG+CGG 0.617493 6_1:-2109812 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_1:-2110939 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_1:+2109948 Msa0868510:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_1:-2110887 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_1:-2110825 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_1:-2110258 None:intergenic
GGATTTGAGACCGGTGAACG+GGG 0.645575 6_1:-2109863 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_1:-2110822 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_1:-2111044 None:intergenic
GGTAACTGGGAAACCAGCTG+AGG 0.671464 6_1:-2109884 None:intergenic
TAAGTTGGCTTGTGCCAAGG+AGG 0.671585 6_1:-2109836 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_1:+2110848 Msa0868510:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_1:+2110826 Msa0868510:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_1:+2110845 Msa0868510:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_1:+2110251 Msa0868510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_1:2110010-2110029 None:intergenic 10.0%
!! AATTAATTGAATTTCATATT+AGG + chr6_1:2110016-2110035 Msa0868510:intron 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_1:2110182-2110201 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_1:2110183-2110202 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_1:2110537-2110556 None:intergenic 10.0%
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_1:2110010-2110029 None:intergenic 10.0%
!! AATTAATTGAATTTCATATT+AGG + chr6_1:2110016-2110035 Msa0868510:intron 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_1:2110182-2110201 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_1:2110183-2110202 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_1:2110537-2110556 None:intergenic 10.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_1:2110009-2110028 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_1:2110011-2110030 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_1:2110057-2110076 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_1:2110370-2110389 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_1:2110466-2110485 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_1:2110575-2110594 None:intergenic 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_1:2110009-2110028 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_1:2110011-2110030 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_1:2110057-2110076 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_1:2110370-2110389 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_1:2110466-2110485 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_1:2110575-2110594 None:intergenic 15.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_1:2110039-2110058 Msa0868510:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_1:2110140-2110159 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_1:2110193-2110212 Msa0868510:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_1:2110381-2110400 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG + chr6_1:2110577-2110596 Msa0868510:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_1:2110781-2110800 Msa0868510:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_1:2111018-2111037 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_1:2111050-2111069 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_1:2111051-2111070 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_1:2110039-2110058 Msa0868510:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_1:2110140-2110159 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_1:2110193-2110212 Msa0868510:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_1:2110381-2110400 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG + chr6_1:2110577-2110596 Msa0868510:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_1:2110781-2110800 Msa0868510:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_1:2111018-2111037 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_1:2111050-2111069 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_1:2111051-2111070 None:intergenic 20.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_1:2109981-2110000 None:intergenic 25.0%
! AGAATGCAACAAAAAGAAAT+TGG + chr6_1:2110094-2110113 Msa0868510:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG + chr6_1:2110584-2110603 Msa0868510:intron 25.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_1:2109981-2110000 None:intergenic 25.0%
! AGAATGCAACAAAAAGAAAT+TGG + chr6_1:2110094-2110113 Msa0868510:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG + chr6_1:2110584-2110603 Msa0868510:intron 25.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_1:2110406-2110425 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_1:2110444-2110463 None:intergenic 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_1:2110942-2110961 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_1:2110943-2110962 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_1:2110943-2110962 Msa0868510:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_1:2111047-2111066 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_1:2111079-2111098 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_1:2110406-2110425 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_1:2110444-2110463 None:intergenic 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_1:2110942-2110961 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_1:2110943-2110962 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_1:2110943-2110962 Msa0868510:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_1:2111047-2111066 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_1:2111079-2111098 None:intergenic 30.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_1:2109908-2109927 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_1:2109917-2109936 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_1:2109987-2110006 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_1:2110286-2110305 Msa0868510:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_1:2110290-2110309 Msa0868510:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_1:2110291-2110310 Msa0868510:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_1:2110324-2110343 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_1:2110323-2110342 Msa0868510:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_1:2110650-2110669 Msa0868510:intron 35.0%
TTCCAAGTGATGAATTTCGT+AGG + chr6_1:2110746-2110765 Msa0868510:intron 35.0%
TCCAAGTGATGAATTTCGTA+GGG + chr6_1:2110747-2110766 Msa0868510:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_1:2110891-2110910 Msa0868510:CDS 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_1:2109908-2109927 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_1:2109917-2109936 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_1:2109987-2110006 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_1:2110286-2110305 Msa0868510:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_1:2110290-2110309 Msa0868510:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_1:2110291-2110310 Msa0868510:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_1:2110324-2110343 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_1:2110323-2110342 Msa0868510:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_1:2110650-2110669 Msa0868510:intron 35.0%
TTCCAAGTGATGAATTTCGT+AGG + chr6_1:2110746-2110765 Msa0868510:intron 35.0%
TCCAAGTGATGAATTTCGTA+GGG + chr6_1:2110747-2110766 Msa0868510:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_1:2110891-2110910 Msa0868510:CDS 35.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_1:2109900-2109919 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_1:2109901-2109920 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_1:2109925-2109944 Msa0868510:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_1:2109994-2110013 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_1:2110222-2110241 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_1:2110295-2110314 Msa0868510:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_1:2110599-2110618 Msa0868510:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_1:2110623-2110642 Msa0868510:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_1:2110721-2110740 None:intergenic 40.0%
CATCACTTGGAACACGAATT+CGG - chr6_1:2110738-2110757 None:intergenic 40.0%
ACCCTACGAAATTCATCACT+TGG - chr6_1:2110751-2110770 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_1:2110890-2110909 None:intergenic 40.0%
GCAGAAGAAATCAAAGCCAT+TGG - chr6_1:2109793-2109812 None:intergenic 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_1:2109900-2109919 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_1:2109901-2109920 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_1:2109925-2109944 Msa0868510:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_1:2109994-2110013 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_1:2110222-2110241 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_1:2110295-2110314 Msa0868510:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_1:2110599-2110618 Msa0868510:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_1:2110623-2110642 Msa0868510:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_1:2110721-2110740 None:intergenic 40.0%
CATCACTTGGAACACGAATT+CGG - chr6_1:2110738-2110757 None:intergenic 40.0%
ACCCTACGAAATTCATCACT+TGG - chr6_1:2110751-2110770 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_1:2110890-2110909 None:intergenic 40.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_1:2109842-2109861 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_1:2109935-2109954 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_1:2109948-2109967 Msa0868510:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_1:2110219-2110238 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_1:2110265-2110284 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_1:2110266-2110285 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_1:2110266-2110285 Msa0868510:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_1:2110302-2110321 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_1:2110308-2110327 Msa0868510:intron 45.0%
!! ATGTGTCGACTCTGTGAATG+TGG + chr6_1:2110689-2110708 Msa0868510:intron 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_1:2110828-2110847 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_1:2110826-2110845 Msa0868510:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_1:2110835-2110854 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_1:2110836-2110855 Msa0868510:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_1:2110862-2110881 Msa0868510:CDS 45.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_1:2109842-2109861 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_1:2109935-2109954 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_1:2109948-2109967 Msa0868510:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_1:2110219-2110238 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_1:2110265-2110284 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_1:2110266-2110285 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_1:2110266-2110285 Msa0868510:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_1:2110302-2110321 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_1:2110308-2110327 Msa0868510:intron 45.0%
!! ATGTGTCGACTCTGTGAATG+TGG + chr6_1:2110689-2110708 Msa0868510:intron 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_1:2110828-2110847 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_1:2110826-2110845 Msa0868510:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_1:2110835-2110854 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_1:2110836-2110855 Msa0868510:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_1:2110862-2110881 Msa0868510:CDS 45.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_1:2110188-2110207 Msa0868510:intron 5.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_1:2110188-2110207 Msa0868510:intron 5.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_1:2109839-2109858 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_1:2109853-2109872 Msa0868510:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_1:2109867-2109886 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_1:2109868-2109887 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_1:2109875-2109894 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_1:2109928-2109947 Msa0868510:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_1:2109932-2109951 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_1:2110204-2110223 Msa0868510:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_1:2110261-2110280 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_1:2110260-2110279 Msa0868510:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_1:2110264-2110283 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_1:2110614-2110633 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_1:2110629-2110648 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_1:2110631-2110650 Msa0868510:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_1:2110638-2110657 Msa0868510:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_1:2110825-2110844 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_1:2110845-2110864 Msa0868510:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_1:2110848-2110867 Msa0868510:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_1:2110877-2110896 None:intergenic 50.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_1:2109839-2109858 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_1:2109853-2109872 Msa0868510:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_1:2109867-2109886 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_1:2109868-2109887 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_1:2109875-2109894 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_1:2109928-2109947 Msa0868510:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_1:2109932-2109951 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_1:2110204-2110223 Msa0868510:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_1:2110261-2110280 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_1:2110260-2110279 Msa0868510:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_1:2110264-2110283 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_1:2110614-2110633 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_1:2110629-2110648 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_1:2110631-2110650 Msa0868510:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_1:2110638-2110657 Msa0868510:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_1:2110825-2110844 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_1:2110845-2110864 Msa0868510:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_1:2110848-2110867 Msa0868510:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_1:2110877-2110896 None:intergenic 50.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_1:2109854-2109873 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_1:2109866-2109885 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_1:2109871-2109890 Msa0868510:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_1:2109887-2109906 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_1:2110251-2110270 Msa0868510:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_1:2110816-2110835 None:intergenic 55.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_1:2109854-2109873 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_1:2109866-2109885 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_1:2109871-2109890 Msa0868510:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_1:2109887-2109906 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_1:2110251-2110270 Msa0868510:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_1:2110816-2110835 None:intergenic 55.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_1:2110257-2110276 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_1:2110814-2110833 Msa0868510:CDS 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_1:2110257-2110276 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_1:2110814-2110833 Msa0868510:CDS 60.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_1:2109815-2109834 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_1:2109827-2109846 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_1:2109834-2109853 None:intergenic 65.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_1:2109815-2109834 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_1:2109827-2109846 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_1:2109834-2109853 None:intergenic 65.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_1:2109824-2109843 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_1:2109822-2109841 Msa0868510:CDS 70.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_1:2109824-2109843 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_1:2109822-2109841 Msa0868510:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 2109793 2111099 2109793 ID=Msa0868510;Name=Msa0868510
chr6_1 mRNA 2109793 2111099 2109793 ID=Msa0868510-mRNA-1;Parent=Msa0868510;Name=Msa0868510-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.5|0.33|1|1|1|3|70|162
chr6_1 exon 2109793 2109969 2109793 ID=Msa0868510-mRNA-1:exon:607;Parent=Msa0868510-mRNA-1
chr6_1 exon 2110210 2110290 2110210 ID=Msa0868510-mRNA-1:exon:608;Parent=Msa0868510-mRNA-1
chr6_1 exon 2110799 2111099 2110799 ID=Msa0868510-mRNA-1:exon:609;Parent=Msa0868510-mRNA-1
chr6_1 CDS 2109793 2109969 2109793 ID=Msa0868510-mRNA-1:cds;Parent=Msa0868510-mRNA-1
chr6_1 CDS 2110210 2110290 2110210 ID=Msa0868510-mRNA-1:cds;Parent=Msa0868510-mRNA-1
chr6_1 CDS 2110799 2111029 2110799 ID=Msa0868510-mRNA-1:cds;Parent=Msa0868510-mRNA-1
chr6_1 three_prime_UTR 2111030 2111099 2111030 ID=Msa0868510-mRNA-1:three_prime_utr;Parent=Msa0868510-mRNA-1
Gene Sequence

>Msa0868510

ATGGCTTTGATTTCTTCTGCCGCAGTCACCACCGTTAGCCGCGCCTCCTTGGCACAAGCCAACTTAGTTGCCCCGTTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTTACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0868510

MALISSAAVTTVSRASLAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*