AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1303690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303690 MtrunA17_Chr4g0070091 97.297 222 5 1 1 222 1 221 7.80e-157 433
Msa1303690 MtrunA17_Chr7g0267151 30.052 193 113 6 51 222 38 229 2.92e-15 72.8
Msa1303690 MtrunA17_Chr1g0177361 31.410 156 95 4 78 222 77 231 7.36e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1303690 AT3G26060.1 78.771 179 35 1 43 221 40 215 1.50e-99 288
Msa1303690 AT3G26060.2 78.333 180 35 2 43 221 40 216 1.19e-97 283
Msa1303690 AT3G26060.3 85.135 148 22 0 74 221 6 153 1.64e-94 273
Msa1303690 AT5G06290.2 34.177 158 88 5 78 222 83 237 4.14e-18 80.5
Msa1303690 AT5G06290.1 35.256 156 89 4 78 222 83 237 5.72e-18 80.5
Msa1303690 AT3G11630.1 33.974 156 91 4 78 222 76 230 6.79e-17 77.4

Find 83 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAACAAGATTGGCTTTC+TGG 0.121852 8_3:-66905191 None:intergenic
GTTGAGTTGGGGTGAGAATT+TGG 0.222433 8_3:+66905163 Msa1303690:five_prime_UTR
TCATCACTCAACAAGGTAAA+TGG 0.285138 8_3:-66907219 None:intergenic
AAGGGATACGGAAGCATTAA+AGG 0.286619 8_3:-66907407 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 8_3:-66905704 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 8_3:+66907267 Msa1303690:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 8_3:-66907202 None:intergenic
CTTAATTACTAGGTTGAGTT+GGG 0.323258 8_3:+66905151 Msa1303690:five_prime_UTR
TACGGAAGCATTAAAGGCTT+TGG 0.346601 8_3:-66907401 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 8_3:+66907279 Msa1303690:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 8_3:-66905371 None:intergenic
ATAGTTACATACTTGAATTA+AGG 0.359749 8_3:-66907433 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 8_3:+66907080 Msa1303690:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 8_3:+66905344 Msa1303690:CDS
GACTCACTGTCTTGCCATCC+TGG 0.400499 8_3:-66905678 None:intergenic
CATACTTGAATTAAGGCAAA+AGG 0.409250 8_3:-66907426 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 8_3:-66905757 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 8_3:+66907072 Msa1303690:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 8_3:-66905496 None:intergenic
GAAAGCCAATCTTGTTTCGC+TGG 0.434729 8_3:+66905194 Msa1303690:five_prime_UTR
AGAGTTACAACTTAATTACT+AGG 0.440665 8_3:+66905141 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 8_3:-66905742 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 8_3:-66907388 None:intergenic
ACTTTGCTCTTCATCTTCCA+TGG 0.463410 8_3:+66905338 Msa1303690:CDS
AATAAATGTGGGGAAAGAAT+TGG 0.464668 8_3:-66905388 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 8_3:+66907255 Msa1303690:CDS
AGAGGGAAAGTGTATACATT+GGG 0.465820 8_3:-66905244 None:intergenic
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 8_3:+66907071 Msa1303690:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 8_3:+66905739 Msa1303690:CDS
ACACCTTCTTCGTTCAAAAG+AGG 0.473477 8_3:+66905513 Msa1303690:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 8_3:-66905370 None:intergenic
GACCCCTGGCTGTACCAAAC+AGG 0.480415 8_3:+66905753 Msa1303690:CDS
ACTTAATTACTAGGTTGAGT+TGG 0.489845 8_3:+66905150 None:intergenic
TGAAGCCAGCGAAACAAGAT+TGG 0.493039 8_3:-66905199 None:intergenic
TTACCTGTTTGGTACAGCCA+GGG 0.504190 8_3:-66905756 None:intergenic
TCTCTATCTATCACCCCAAA+AGG 0.504556 8_3:+66905287 Msa1303690:five_prime_UTR
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 8_3:+66907056 Msa1303690:CDS
CGAAGAAGGTGTAGAAGAAG+TGG 0.514867 8_3:-66905502 None:intergenic
ACAGTGTTTGTGATAATTGA+AGG 0.520796 8_3:-66907583 None:intergenic
ATACTTGAATTAAGGCAAAA+GGG 0.521615 8_3:-66907425 None:intergenic
GATAGATTATGATATGAGAG+AGG 0.526572 8_3:-66905262 None:intergenic
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 8_3:+66905695 Msa1303690:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 8_3:+66907222 Msa1303690:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 8_3:+66907221 Msa1303690:CDS
GAATTAAGGCAAAAGGGATA+CGG 0.536094 8_3:-66907419 None:intergenic
ACAAGATTGGCTTTCTGGCG+TGG 0.542842 8_3:-66905186 None:intergenic
AATGATCCAAAGAAATCGCC+AGG 0.551351 8_3:-66907273 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.552307 8_3:+66905625 Msa1303690:intron
ATTTCTTTGGATCATTGCCT+GGG 0.553738 8_3:+66907280 Msa1303690:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 8_3:-66905658 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 8_3:+66907245 Msa1303690:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 8_3:+66905660 Msa1303690:CDS
GAGAGGGAAAGTGTATACAT+TGG 0.554364 8_3:-66905245 None:intergenic
TATACATTGGGTTGAGTGGG+TGG 0.556458 8_3:-66905232 None:intergenic
ATAGATTATGATATGAGAGA+GGG 0.563899 8_3:-66905261 None:intergenic
AGTGTATACATTGGGTTGAG+TGG 0.565184 8_3:-66905236 None:intergenic
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 8_3:+66907064 Msa1303690:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 8_3:-66907036 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 8_3:+66907235 Msa1303690:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 8_3:-66905383 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 8_3:-66905755 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 8_3:+66905639 Msa1303690:CDS
TGTTTGATCTCTATATGAGA+AGG 0.582902 8_3:-66907532 None:intergenic
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 8_3:-66905655 None:intergenic
GTGTATACATTGGGTTGAGT+GGG 0.592798 8_3:-66905235 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 8_3:+66907244 Msa1303690:CDS
AATCAGCTACTTAATTACAA+TGG 0.604161 8_3:-66907469 None:intergenic
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 8_3:+66905694 Msa1303690:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 8_3:-66905721 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 8_3:-66905355 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 8_3:-66907297 None:intergenic
TTAATTACTAGGTTGAGTTG+GGG 0.611650 8_3:+66905152 Msa1303690:five_prime_UTR
TGGAAGAATGGGATAACTTG+AGG 0.612538 8_3:-66905470 None:intergenic
ACAATTATAATGTCTCGCGA+TGG 0.616434 8_3:+66907552 Msa1303690:three_prime_UTR
AATGTGGGGAAAGAATTGGT+AGG 0.616864 8_3:-66905384 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 8_3:+66907230 Msa1303690:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 8_3:+66907246 Msa1303690:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 8_3:+66907103 Msa1303690:CDS
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 8_3:-66905741 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 8_3:-66907226 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 8_3:+66905664 Msa1303690:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 8_3:+66905705 Msa1303690:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 8_3:-66905398 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTTTATAATCCATAAA+TGG + chr8_3:66905821-66905840 Msa1303690:intron 15.0%
!! AAAAAATTGTTTACCTAAAT+AGG + chr8_3:66906567-66906586 Msa1303690:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG - chr8_3:66906862-66906881 None:intergenic 15.0%
!!! TTTTATGAATTTATTATTGC+AGG + chr8_3:66907013-66907032 Msa1303690:intron 15.0%
!! CCAAAAAATAAAGAATTGAA+TGG - chr8_3:66905450-66905469 None:intergenic 20.0%
!!! CCATTCAATTCTTTATTTTT+TGG + chr8_3:66905447-66905466 Msa1303690:CDS 20.0%
!!! TCATAACTACTTTTTGTAAT+AGG + chr8_3:66906139-66906158 Msa1303690:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG + chr8_3:66906929-66906948 Msa1303690:intron 20.0%
!!! CAATGTATTGGTTAATTAAT+TGG - chr8_3:66907163-66907182 None:intergenic 20.0%
!! ATAGTTACATACTTGAATTA+AGG - chr8_3:66907436-66907455 None:intergenic 20.0%
! ATAGATTATGATATGAGAGA+GGG - chr8_3:66905264-66905283 None:intergenic 25.0%
!! TTACGTTTTCTTTTCCTTTT+GGG - chr8_3:66905304-66905323 None:intergenic 25.0%
! AAACAATGCATATCCATTTA+TGG - chr8_3:66905837-66905856 None:intergenic 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG + chr8_3:66905850-66905869 Msa1303690:intron 25.0%
! TTATGTTAGATTGTTAGAGT+TGG + chr8_3:66905899-66905918 Msa1303690:intron 25.0%
! TAACTAATTAACTTCCCAAA+AGG - chr8_3:66906067-66906086 None:intergenic 25.0%
!!! TTTTGGGAAGTTAATTAGTT+AGG + chr8_3:66906066-66906085 Msa1303690:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG + chr8_3:66906096-66906115 Msa1303690:intron 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG + chr8_3:66906422-66906441 Msa1303690:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG + chr8_3:66906423-66906442 Msa1303690:intron 25.0%
! ATGAATCAATAGATCATAGT+TGG + chr8_3:66906467-66906486 Msa1303690:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG + chr8_3:66906479-66906498 Msa1303690:intron 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG - chr8_3:66906796-66906815 None:intergenic 25.0%
!! AATTGATTCCAATATGGTAA+AGG + chr8_3:66906935-66906954 Msa1303690:intron 25.0%
! GCAAATACTTGATATAGTTA+AGG + chr8_3:66906984-66907003 Msa1303690:intron 25.0%
! ACTTATGTTCTTGACAAAAA+TGG + chr8_3:66907309-66907328 Msa1303690:CDS 25.0%
! ATACTTGAATTAAGGCAAAA+GGG - chr8_3:66907428-66907447 None:intergenic 25.0%
! AATCAGCTACTTAATTACAA+TGG - chr8_3:66907472-66907491 None:intergenic 25.0%
!! ATATCAGTATCTTTTGCATA+TGG + chr8_3:66907609-66907628 Msa1303690:three_prime_UTR 25.0%
! CTTAATTACTAGGTTGAGTT+GGG + chr8_3:66905151-66905170 Msa1303690:five_prime_UTR 30.0%
! TTAATTACTAGGTTGAGTTG+GGG + chr8_3:66905152-66905171 Msa1303690:five_prime_UTR 30.0%
GATAGATTATGATATGAGAG+AGG - chr8_3:66905265-66905284 None:intergenic 30.0%
! TACGTTTTCTTTTCCTTTTG+GGG - chr8_3:66905303-66905322 None:intergenic 30.0%
! GTTACGTTTTCTTTTCCTTT+TGG - chr8_3:66905305-66905324 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG - chr8_3:66905391-66905410 None:intergenic 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG - chr8_3:66905402-66905421 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG - chr8_3:66905416-66905435 None:intergenic 30.0%
!! AGTGATGATGATATGTTTTG+AGG - chr8_3:66905417-66905436 None:intergenic 30.0%
! ATTGTGTGAATAAAGTACCT+TGG - chr8_3:66905550-66905569 None:intergenic 30.0%
CAATAAATTCAAAATGCAGG+TGG - chr8_3:66905605-66905624 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAT+TGG + chr8_3:66905603-66905622 Msa1303690:intron 30.0%
TGCCAATAAATTCAAAATGC+AGG - chr8_3:66905608-66905627 None:intergenic 30.0%
!!! TTTTTTTCTCCTTACCTGTT+TGG - chr8_3:66905770-66905789 None:intergenic 30.0%
CATTGTTTGTTCTAGTGAAA+AGG + chr8_3:66905849-66905868 Msa1303690:intron 30.0%
! TGTTAGAGTTGGTTAGTATT+TGG + chr8_3:66905910-66905929 Msa1303690:intron 30.0%
ACATATGTACAAGACTTTCA+AGG - chr8_3:66906270-66906289 None:intergenic 30.0%
AAGACTAATATTCTGGGTAA+TGG - chr8_3:66906324-66906343 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG - chr8_3:66906330-66906349 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG - chr8_3:66906331-66906350 None:intergenic 30.0%
TCAACCATGCAACAATAATT+TGG + chr8_3:66906350-66906369 Msa1303690:intron 30.0%
CAACCATGCAACAATAATTT+GGG + chr8_3:66906351-66906370 Msa1303690:intron 30.0%
!! TGGTATATATGTTGGTTTAG+AGG + chr8_3:66906487-66906506 Msa1303690:intron 30.0%
AATATTCATTGTCATTGCAC+CGG - chr8_3:66906530-66906549 None:intergenic 30.0%
ATTGTTTACCTAAATAGGAC+AGG + chr8_3:66906572-66906591 Msa1303690:intron 30.0%
TTGTTTACCTAAATAGGACA+GGG + chr8_3:66906573-66906592 Msa1303690:intron 30.0%
!! TTTAGAGCTCGTTTTTAAAC+AGG + chr8_3:66906609-66906628 Msa1303690:intron 30.0%
!! TTAGAGCTCGTTTTTAAACA+GGG + chr8_3:66906610-66906629 Msa1303690:intron 30.0%
GAGAAATGAAATATTGCAGA+AGG - chr8_3:66906774-66906793 None:intergenic 30.0%
CTTCATAAACAACTACTGTT+AGG - chr8_3:66906904-66906923 None:intergenic 30.0%
CTAACAGTAGTTGTTTATGA+AGG + chr8_3:66906902-66906921 Msa1303690:intron 30.0%
CTACATTTCATGCAATGTAT+TGG - chr8_3:66907175-66907194 None:intergenic 30.0%
CAATACATTGCATGAAATGT+AGG + chr8_3:66907173-66907192 Msa1303690:intron 30.0%
CATACTTGAATTAAGGCAAA+AGG - chr8_3:66907429-66907448 None:intergenic 30.0%
TGTTTGATCTCTATATGAGA+AGG - chr8_3:66907535-66907554 None:intergenic 30.0%
ACAGTGTTTGTGATAATTGA+AGG - chr8_3:66907586-66907605 None:intergenic 30.0%
! AGAGGGAAAGTGTATACATT+GGG - chr8_3:66905247-66905266 None:intergenic 35.0%
TTTGAGGGTGAATAAATGTG+GGG - chr8_3:66905401-66905420 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG - chr8_3:66905403-66905422 None:intergenic 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG - chr8_3:66905484-66905503 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG - chr8_3:66905485-66905504 None:intergenic 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG - chr8_3:66905493-66905512 None:intergenic 35.0%
! AAACCTCTTTTGAACGAAGA+AGG - chr8_3:66905519-66905538 None:intergenic 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG + chr8_3:66905530-66905549 Msa1303690:CDS 35.0%
GAATTTATTGGCAAATGAGC+AGG + chr8_3:66905615-66905634 Msa1303690:intron 35.0%
! GAGTTGGTTAGTATTTGGAA+TGG + chr8_3:66905915-66905934 Msa1303690:intron 35.0%
! TGGTTAGTATTTGGAATGGA+TGG + chr8_3:66905919-66905938 Msa1303690:intron 35.0%
CACTCTTTCATCTCTTTACA+AGG - chr8_3:66906186-66906205 None:intergenic 35.0%
TGTACAAGACTTTCAAGGAA+AGG - chr8_3:66906265-66906284 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG - chr8_3:66906357-66906376 None:intergenic 35.0%
GCATTACTGCTAAGATATTG+TGG - chr8_3:66906400-66906419 None:intergenic 35.0%
GAAAAGGCTTCAAGCATTAT+CGG - chr8_3:66906650-66906669 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG + chr8_3:66906650-66906669 Msa1303690:intron 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG + chr8_3:66906681-66906700 Msa1303690:intron 35.0%
ATTTGAGAACTCTTCTCATG+TGG - chr8_3:66906834-66906853 None:intergenic 35.0%
CAACTACTGTTAGGAATTAG+AGG - chr8_3:66906895-66906914 None:intergenic 35.0%
ATTCCAATATGGTAAAGGCA+TGG + chr8_3:66906940-66906959 Msa1303690:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG - chr8_3:66906946-66906965 None:intergenic 35.0%
TATGAGAAGTTCAAGAAAGC+AGG + chr8_3:66907056-66907075 Msa1303690:CDS 35.0%
AAATGGAAGCTTGTACTTCT+TGG - chr8_3:66907205-66907224 None:intergenic 35.0%
TCATCACTCAACAAGGTAAA+TGG - chr8_3:66907222-66907241 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG + chr8_3:66907221-66907240 Msa1303690:CDS 35.0%
TTTACCTTGTTGAGTGATGA+GGG + chr8_3:66907222-66907241 Msa1303690:CDS 35.0%
TAACAAGGTAAGGAAAGAGT+GGG + chr8_3:66907245-66907264 Msa1303690:CDS 35.0%
ATTTCTTTGGATCATTGCCT+GGG + chr8_3:66907280-66907299 Msa1303690:CDS 35.0%
GAATTAAGGCAAAAGGGATA+CGG - chr8_3:66907422-66907441 None:intergenic 35.0%
!! GTAGCTGATTTTGAACACTT+TGG + chr8_3:66907482-66907501 Msa1303690:three_prime_UTR 35.0%
ACAATTATAATGTCTCGCGA+TGG + chr8_3:66907552-66907571 Msa1303690:three_prime_UTR 35.0%
!! GTGTATACATTGGGTTGAGT+GGG - chr8_3:66905238-66905257 None:intergenic 40.0%
!! AGTGTATACATTGGGTTGAG+TGG - chr8_3:66905239-66905258 None:intergenic 40.0%
! GAGAGGGAAAGTGTATACAT+TGG - chr8_3:66905248-66905267 None:intergenic 40.0%
TCTCTATCTATCACCCCAAA+AGG + chr8_3:66905287-66905306 Msa1303690:five_prime_UTR 40.0%
ACTTTGCTCTTCATCTTCCA+TGG + chr8_3:66905338-66905357 Msa1303690:CDS 40.0%
ATGTGGGGAAAGAATTGGTA+GGG - chr8_3:66905386-66905405 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG - chr8_3:66905387-66905406 None:intergenic 40.0%
TGGAAGAATGGGATAACTTG+AGG - chr8_3:66905473-66905492 None:intergenic 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG - chr8_3:66905499-66905518 None:intergenic 40.0%
ACACCTTCTTCGTTCAAAAG+AGG + chr8_3:66905513-66905532 Msa1303690:CDS 40.0%
TGAGTCTCTCCAAGTACAAA+GGG + chr8_3:66905695-66905714 Msa1303690:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG - chr8_3:66905724-66905743 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG + chr8_3:66905856-66905875 Msa1303690:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG + chr8_3:66906037-66906056 Msa1303690:intron 40.0%
!!! TTAGTTCTGGCAGACCTTTT+GGG + chr8_3:66906050-66906069 Msa1303690:intron 40.0%
GTTAGGTCTCGTCAATTTGT+TGG + chr8_3:66906083-66906102 Msa1303690:intron 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG - chr8_3:66906311-66906330 None:intergenic 40.0%
AACTTGATGTGCAGTTACTG+TGG + chr8_3:66906374-66906393 Msa1303690:intron 40.0%
ACATGATCCCTGTCCTATTT+AGG - chr8_3:66906583-66906602 None:intergenic 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG + chr8_3:66906680-66906699 Msa1303690:intron 40.0%
CCCTACAAAGCTGTAAAAAC+AGG - chr8_3:66906684-66906703 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG - chr8_3:66907039-66907058 None:intergenic 40.0%
TCCTCTCACAAGGTAAAACT+TGG + chr8_3:66907113-66907132 Msa1303690:intron 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG - chr8_3:66907117-66907136 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG + chr8_3:66907244-66907263 Msa1303690:CDS 40.0%
AACAAGGTAAGGAAAGAGTG+GGG + chr8_3:66907246-66907265 Msa1303690:CDS 40.0%
AATGATCCAAAGAAATCGCC+AGG - chr8_3:66907276-66907295 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG + chr8_3:66907279-66907298 Msa1303690:CDS 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG - chr8_3:66907365-66907384 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG - chr8_3:66907369-66907388 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG - chr8_3:66907391-66907410 None:intergenic 40.0%
!! TACGGAAGCATTAAAGGCTT+TGG - chr8_3:66907404-66907423 None:intergenic 40.0%
!! AAGGGATACGGAAGCATTAA+AGG - chr8_3:66907410-66907429 None:intergenic 40.0%
!! GTTGAGTTGGGGTGAGAATT+TGG + chr8_3:66905163-66905182 Msa1303690:five_prime_UTR 45.0%
!! GCGAAACAAGATTGGCTTTC+TGG - chr8_3:66905194-66905213 None:intergenic 45.0%
! GAAAGCCAATCTTGTTTCGC+TGG + chr8_3:66905194-66905213 Msa1303690:five_prime_UTR 45.0%
TGAAGCCAGCGAAACAAGAT+TGG - chr8_3:66905202-66905221 None:intergenic 45.0%
!! TATACATTGGGTTGAGTGGG+TGG - chr8_3:66905235-66905254 None:intergenic 45.0%
CTCTTCATCTTCCATGGCTA+AGG + chr8_3:66905344-66905363 Msa1303690:CDS 45.0%
ATTGGTAGGGAGAGTGATCA+GGG - chr8_3:66905373-66905392 None:intergenic 45.0%
AATTGGTAGGGAGAGTGATC+AGG - chr8_3:66905374-66905393 None:intergenic 45.0%
! CGAAGAAGGTGTAGAAGAAG+TGG - chr8_3:66905505-66905524 None:intergenic 45.0%
GCAAATGAGCAGGTGAGTAA+AGG + chr8_3:66905625-66905644 Msa1303690:intron 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG + chr8_3:66905639-66905658 Msa1303690:CDS 45.0%
TGGTCTTTCAACGTGAAAGC+CGG - chr8_3:66905661-66905680 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG + chr8_3:66905664-66905683 Msa1303690:CDS 45.0%
GTGAGTCTCTCCAAGTACAA+AGG + chr8_3:66905694-66905713 Msa1303690:CDS 45.0%
CACAGGTTTCCCTTTGTACT+TGG - chr8_3:66905707-66905726 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG + chr8_3:66905705-66905724 Msa1303690:CDS 45.0%
TTACCTGTTTGGTACAGCCA+GGG - chr8_3:66905759-66905778 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG + chr8_3:66905863-66905882 Msa1303690:intron 45.0%
GTCTGCCAGAACTAACACAA+GGG - chr8_3:66906045-66906064 None:intergenic 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG + chr8_3:66906049-66906068 Msa1303690:intron 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG - chr8_3:66906312-66906331 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG + chr8_3:66906504-66906523 Msa1303690:intron 45.0%
AGGCTTCAAGCATTATCGGA+CGG - chr8_3:66906646-66906665 None:intergenic 45.0%
AGCTGTAAAAACAGGCTACC+CGG - chr8_3:66906676-66906695 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG + chr8_3:66907103-66907122 Msa1303690:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG - chr8_3:66907229-66907248 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG + chr8_3:66907230-66907249 Msa1303690:CDS 45.0%
GTGATGAGGGTAACAAGGTA+AGG + chr8_3:66907235-66907254 Msa1303690:CDS 45.0%
AGAACATAAGTCTCTCTCCC+AGG - chr8_3:66907300-66907319 None:intergenic 45.0%
!! ACAAGATTGGCTTTCTGGCG+TGG - chr8_3:66905189-66905208 None:intergenic 50.0%
GATCAGGGAAACCTTAGCCA+TGG - chr8_3:66905358-66905377 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG - chr8_3:66905658-66905677 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG + chr8_3:66905660-66905679 Msa1303690:CDS 50.0%
TACCTGTTTGGTACAGCCAG+GGG - chr8_3:66905758-66905777 None:intergenic 50.0%
CTTACCTGTTTGGTACAGCC+AGG - chr8_3:66905760-66905779 None:intergenic 50.0%
CTGGCTGTACCAAACAGGTA+AGG + chr8_3:66905758-66905777 Msa1303690:intron 50.0%
GGTCTGCCAGAACTAACACA+AGG - chr8_3:66906046-66906065 None:intergenic 50.0%
GCTTCAAGCATTATCGGACG+GGG - chr8_3:66906644-66906663 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG - chr8_3:66906645-66906664 None:intergenic 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG + chr8_3:66906654-66906673 Msa1303690:intron 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG + chr8_3:66906691-66906710 Msa1303690:intron 50.0%
GATCTTCTACATCCTCACCG+AGG - chr8_3:66906711-66906730 None:intergenic 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG + chr8_3:66907027-66907046 Msa1303690:intron 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG + chr8_3:66907028-66907047 Msa1303690:intron 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG + chr8_3:66907064-66907083 Msa1303690:CDS 50.0%
AAAGCAGGAGCAGAGGTTGT+TGG + chr8_3:66907071-66907090 Msa1303690:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG + chr8_3:66907072-66907091 Msa1303690:CDS 50.0%
GCAGAGGTTGTTGGGATAAG+TGG + chr8_3:66907080-66907099 Msa1303690:CDS 50.0%
GACTCACTGTCTTGCCATCC+TGG - chr8_3:66905681-66905700 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG + chr8_3:66906508-66906527 Msa1303690:intron 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG + chr8_3:66906655-66906674 Msa1303690:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG + chr8_3:66906696-66906715 Msa1303690:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG + chr8_3:66907267-66907286 Msa1303690:CDS 55.0%
TACCCTGCTGATGAGACCCC+TGG + chr8_3:66905739-66905758 Msa1303690:CDS 60.0%
AGCCAGGGGTCTCATCAGCA+GGG - chr8_3:66905744-66905763 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG + chr8_3:66905753-66905772 Msa1303690:CDS 60.0%
ACAGGCTACCCGGCCTGAAA+AGG - chr8_3:66906666-66906685 None:intergenic 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG + chr8_3:66907255-66907274 Msa1303690:CDS 60.0%
CAGCCAGGGGTCTCATCAGC+AGG - chr8_3:66905745-66905764 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 66905151 66907656 66905151 ID=Msa1303690;Name=Msa1303690
chr8_3 mRNA 66905151 66907656 66905151 ID=Msa1303690-mRNA-1;Parent=Msa1303690;Name=Msa1303690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|4|243|222
chr8_3 exon 66905151 66905551 66905151 ID=Msa1303690-mRNA-1:exon:20406;Parent=Msa1303690-mRNA-1
chr8_3 exon 66905637 66905774 66905637 ID=Msa1303690-mRNA-1:exon:20407;Parent=Msa1303690-mRNA-1
chr8_3 exon 66907035 66907124 66907035 ID=Msa1303690-mRNA-1:exon:20408;Parent=Msa1303690-mRNA-1
chr8_3 exon 66907195 66907656 66907195 ID=Msa1303690-mRNA-1:exon:20409;Parent=Msa1303690-mRNA-1
chr8_3 five_prime_UTR 66905151 66905329 66905151 ID=Msa1303690-mRNA-1:five_prime_utr;Parent=Msa1303690-mRNA-1
chr8_3 CDS 66905330 66905551 66905330 ID=Msa1303690-mRNA-1:cds;Parent=Msa1303690-mRNA-1
chr8_3 CDS 66905637 66905774 66905637 ID=Msa1303690-mRNA-1:cds;Parent=Msa1303690-mRNA-1
chr8_3 CDS 66907035 66907124 66907035 ID=Msa1303690-mRNA-1:cds;Parent=Msa1303690-mRNA-1
chr8_3 CDS 66907195 66907413 66907195 ID=Msa1303690-mRNA-1:cds;Parent=Msa1303690-mRNA-1
chr8_3 three_prime_UTR 66907414 66907656 66907414 ID=Msa1303690-mRNA-1:three_prime_utr;Parent=Msa1303690-mRNA-1
Gene Sequence

>Msa1303690

ATGTTATCACTTTGCTCTTCATCTTCCATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTTTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCGTTCAAAAGAGGTTTCATTTTTGCCAAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA

Protein sequence

>Msa1303690

MLSLCSSSSMAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL*