AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1091450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091450 MtrunA17_Chr7g0215351 69.591 171 7 1 11 136 11 181 3.85e-80 234
Msa1091450 MtrunA17_Chr7g0215381 69.006 171 8 1 11 136 11 181 5.97e-80 233
Msa1091450 MtrunA17_Chr7g0215421 69.591 171 7 1 11 136 11 181 9.06e-80 233
Msa1091450 MtrunA17_Chr7g0215361 69.412 170 7 1 12 136 12 181 1.83e-79 232
Msa1091450 MtrunA17_Chr7g0215431 68.824 170 8 1 12 136 12 181 1.73e-78 229
Msa1091450 MtrunA17_Chr6g0457471 62.011 179 22 2 4 136 2 180 1.31e-72 214
Msa1091450 MtrunA17_Chr6g0457461 60.894 179 21 3 4 136 2 177 2.62e-69 206
Msa1091450 MtrunA17_Chr4g0072241 50.000 74 37 0 62 135 96 169 1.59e-27 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1091450 AT5G38410.1 51.648 182 38 3 1 136 1 178 1.31e-56 174
Msa1091450 AT5G38410.3 50.267 187 38 3 1 136 1 183 9.90e-56 172
Msa1091450 AT5G38430.1 50.549 182 40 3 1 136 1 178 6.19e-55 170
Msa1091450 AT5G38430.2 50.549 182 40 3 1 136 1 178 6.19e-55 170
Msa1091450 AT1G67090.1 50.549 182 40 3 1 136 1 178 7.07e-55 170
Msa1091450 AT5G38420.1 50.549 182 40 3 1 136 1 178 8.98e-55 170
Msa1091450 AT5G38410.2 52.571 175 40 4 1 136 1 171 1.47e-53 166
Msa1091450 AT1G67090.2 43.697 119 47 7 1 118 1 100 3.60e-15 67.8

Find 43 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTATAAGACCATAATAT+TGG 0.289906 7_3:+6776532 Msa1091450:five_prime_UTR
TCTTTGTTGACCTTTGTAAC+TGG 0.323260 7_3:-6776773 None:intergenic
AAGACCATAATATTGGAAAT+AGG 0.332452 7_3:+6776539 Msa1091450:five_prime_UTR
GATACTATGACGGACGTTAC+TGG 0.345500 7_3:+6777432 Msa1091450:CDS
CTTTACTAGTGAACTAAGTA+AGG 0.376005 7_3:+6776629 Msa1091450:intron
TGATGCTTCTCAAGTGTTGA+AGG 0.410018 7_3:+6777487 Msa1091450:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_3:+6777458 Msa1091450:CDS
GAAATTACAAACAGAACAAA+TGG 0.425519 7_3:-6777672 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 7_3:+6776697 Msa1091450:CDS
ATGATACGGACAAAGGCATC+AGG 0.443523 7_3:-6777536 None:intergenic
GGCGCGGTGGCTCCATTCGT+TGG 0.460922 7_3:+6776728 Msa1091450:CDS
AATTTACTATCTGCCATTGA+AGG 0.468057 7_3:+6777633 Msa1091450:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_3:+6777539 Msa1091450:CDS
CGTGCCTCTTCGGTACAATC+TGG 0.487772 7_3:+6776707 Msa1091450:CDS
CTGGTGAACTGTGGTTCTCA+TGG 0.508830 7_3:-6777409 None:intergenic
CTTTGTTGACCTTTGTAACT+GGG 0.514716 7_3:-6776772 None:intergenic
TCTCAAATTTAGTAGACTGC+AGG 0.515110 7_3:-6777611 None:intergenic
CATGAGAACCACAGTTCACC+AGG 0.519088 7_3:+6777410 Msa1091450:CDS
TATTATGGTCTTATAAATTG+TGG 0.521418 7_3:-6776528 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.537419 7_3:-6776804 None:intergenic
GTTGGACTAAAGTCCATGGC+TGG 0.555609 7_3:+6776746 Msa1091450:CDS
TAACGTCCGTCATAGTATCC+TGG 0.560465 7_3:-6777428 None:intergenic
AGCTGAAGAGGACATGATAG+AGG 0.561007 7_3:-6776669 None:intergenic
ACTTCCATTGCAAGCAATGG+TGG 0.573273 7_3:+6776800 Msa1091450:CDS
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_3:-6777550 None:intergenic
TTTACTAGTGAACTAAGTAA+GGG 0.581770 7_3:+6776630 Msa1091450:intron
ATTACTTCCATTGCAAGCAA+TGG 0.582522 7_3:+6776797 Msa1091450:CDS
CGCGCCAGATTGTACCGAAG+AGG 0.592678 7_3:-6776711 None:intergenic
GGCTGGCTTCCCAGTTACAA+AGG 0.593536 7_3:+6776763 Msa1091450:CDS
AACTGTAGTCACAGCTGAAG+AGG 0.597051 7_3:-6776681 None:intergenic
GCATCAGTTGCTCCAAACAA+AGG 0.598394 7_3:-6777470 None:intergenic
TTCGGTACAATCTGGCGCGG+TGG 0.607482 7_3:+6776715 Msa1091450:CDS
ATTCGTTGGACTAAAGTCCA+TGG 0.609669 7_3:+6776742 Msa1091450:CDS
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_3:-6776759 None:intergenic
ATGGACTTTAGTCCAACGAA+TGG 0.623442 7_3:-6776740 None:intergenic
CATAGTATCCTGGTGAACTG+TGG 0.641120 7_3:-6777418 None:intergenic
CTCTTCGGTACAATCTGGCG+CGG 0.651184 7_3:+6776712 Msa1091450:CDS
CAGATTGTACCGAAGAGGCA+CGG 0.652303 7_3:-6776706 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_3:+6776820 Msa1091450:CDS
TGATACGGACAAAGGCATCA+GGG 0.656050 7_3:-6777535 None:intergenic
AGTTCACCAGGATACTATGA+CGG 0.676016 7_3:+6777422 Msa1091450:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 7_3:-6777543 None:intergenic
ACGGACGTTACTGGACAATG+TGG 0.708236 7_3:+6777441 Msa1091450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAAGACCATAATAT+TGG + chr7_3:6776532-6776551 Msa1091450:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr7_3:6777111-6777130 Msa1091450:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr7_3:6777688-6777707 Msa1091450:intron 15.0%
!! AATTTATAAGACCATAATAT+TGG + chr7_3:6776532-6776551 Msa1091450:five_prime_UTR 15.0%
!!! TTCAAATTTTGTTCAATTTT+AGG + chr7_3:6777111-6777130 Msa1091450:intron 15.0%
!!! TAATTTCCTTTTCTTTTTAA+AGG + chr7_3:6777688-6777707 Msa1091450:intron 15.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr7_3:6776531-6776550 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr7_3:6776546-6776565 None:intergenic 20.0%
!!! TTACATATTTTGATACTAGA+AGG + chr7_3:6777066-6777085 Msa1091450:intron 20.0%
!!! ACATTTCCTTTAAAAAGAAA+AGG - chr7_3:6777697-6777716 None:intergenic 20.0%
!!! TATTATGGTCTTATAAATTG+TGG - chr7_3:6776531-6776550 None:intergenic 20.0%
!!! TTTTCCTATTTCCAATATTA+TGG - chr7_3:6776546-6776565 None:intergenic 20.0%
!!! TTACATATTTTGATACTAGA+AGG + chr7_3:6777066-6777085 Msa1091450:intron 20.0%
!!! ACATTTCCTTTAAAAAGAAA+AGG - chr7_3:6777697-6777716 None:intergenic 20.0%
! AAGACCATAATATTGGAAAT+AGG + chr7_3:6776539-6776558 Msa1091450:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr7_3:6776630-6776649 Msa1091450:intron 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr7_3:6776643-6776662 Msa1091450:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr7_3:6776999-6777018 None:intergenic 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr7_3:6777116-6777135 Msa1091450:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr7_3:6777209-6777228 Msa1091450:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_3:6777266-6777285 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr7_3:6777362-6777381 Msa1091450:intron 25.0%
! GAAAAAAAATGTTCCTTCAA+TGG - chr7_3:6777649-6777668 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr7_3:6777675-6777694 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr7_3:6777746-6777765 Msa1091450:three_prime_UTR 25.0%
! AAGACCATAATATTGGAAAT+AGG + chr7_3:6776539-6776558 Msa1091450:five_prime_UTR 25.0%
! TTTACTAGTGAACTAAGTAA+GGG + chr7_3:6776630-6776649 Msa1091450:intron 25.0%
! TAAGTAAGGGAGAAAAAAAA+TGG + chr7_3:6776643-6776662 Msa1091450:exon 25.0%
! TTAAAGAGTAACATGTCATA+TGG - chr7_3:6776999-6777018 None:intergenic 25.0%
!!! ATTTTGTTCAATTTTAGGTG+TGG + chr7_3:6777116-6777135 Msa1091450:intron 25.0%
! AAGAAGTAGAATACCTTATA+AGG + chr7_3:6777209-6777228 Msa1091450:intron 25.0%
! AGTAAATGAATATTAGACCT+CGG - chr7_3:6777266-6777285 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTCTACT+TGG + chr7_3:6777362-6777381 Msa1091450:intron 25.0%
! GAAAAAAAATGTTCCTTCAA+TGG - chr7_3:6777649-6777668 None:intergenic 25.0%
! GAAATTACAAACAGAACAAA+TGG - chr7_3:6777675-6777694 None:intergenic 25.0%
!!! GATTTTGAAATGCAAATAGA+TGG + chr7_3:6777746-6777765 Msa1091450:three_prime_UTR 25.0%
CTTTACTAGTGAACTAAGTA+AGG + chr7_3:6776629-6776648 Msa1091450:intron 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr7_3:6777087-6777106 Msa1091450:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr7_3:6777213-6777232 Msa1091450:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr7_3:6777214-6777233 Msa1091450:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr7_3:6777305-6777324 Msa1091450:intron 30.0%
AATTTACTATCTGCCATTGA+AGG + chr7_3:6777633-6777652 Msa1091450:three_prime_UTR 30.0%
!!! AAATGTCTCCAGTGTTTTTT+CGG + chr7_3:6777711-6777730 Msa1091450:three_prime_UTR 30.0%
CTTTACTAGTGAACTAAGTA+AGG + chr7_3:6776629-6776648 Msa1091450:intron 30.0%
GGTTACTTGAATAGCATTAA+AGG + chr7_3:6777087-6777106 Msa1091450:intron 30.0%
AGTAGAATACCTTATAAGGA+AGG + chr7_3:6777213-6777232 Msa1091450:intron 30.0%
GTAGAATACCTTATAAGGAA+GGG + chr7_3:6777214-6777233 Msa1091450:intron 30.0%
!! ATATAATCGTTGTTTTGTCG+TGG + chr7_3:6777305-6777324 Msa1091450:intron 30.0%
AATTTACTATCTGCCATTGA+AGG + chr7_3:6777633-6777652 Msa1091450:three_prime_UTR 30.0%
!!! AAATGTCTCCAGTGTTTTTT+CGG + chr7_3:6777711-6777730 Msa1091450:three_prime_UTR 30.0%
CTTTGTTGACCTTTGTAACT+GGG - chr7_3:6776775-6776794 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr7_3:6776776-6776795 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr7_3:6776797-6776816 Msa1091450:CDS 35.0%
CATAGAAGGTGATATAAAGC+AGG - chr7_3:6776861-6776880 None:intergenic 35.0%
!! ATCACCTTCTATGACTTGTT+TGG + chr7_3:6776868-6776887 Msa1091450:intron 35.0%
CAATCCAAACAAGTCATAGA+AGG - chr7_3:6776875-6776894 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_3:6777145-6777164 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr7_3:6777218-6777237 Msa1091450:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr7_3:6777219-6777238 Msa1091450:intron 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr7_3:6777614-6777633 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr7_3:6777724-6777743 Msa1091450:three_prime_UTR 35.0%
CTTTGTTGACCTTTGTAACT+GGG - chr7_3:6776775-6776794 None:intergenic 35.0%
TCTTTGTTGACCTTTGTAAC+TGG - chr7_3:6776776-6776795 None:intergenic 35.0%
ATTACTTCCATTGCAAGCAA+TGG + chr7_3:6776797-6776816 Msa1091450:CDS 35.0%
CATAGAAGGTGATATAAAGC+AGG - chr7_3:6776861-6776880 None:intergenic 35.0%
!! ATCACCTTCTATGACTTGTT+TGG + chr7_3:6776868-6776887 Msa1091450:intron 35.0%
CAATCCAAACAAGTCATAGA+AGG - chr7_3:6776875-6776894 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_3:6777145-6777164 None:intergenic 35.0%
AATACCTTATAAGGAAGGGA+TGG + chr7_3:6777218-6777237 Msa1091450:intron 35.0%
ATACCTTATAAGGAAGGGAT+GGG + chr7_3:6777219-6777238 Msa1091450:intron 35.0%
TCTCAAATTTAGTAGACTGC+AGG - chr7_3:6777614-6777633 None:intergenic 35.0%
!!! GTTTTTTCGGTCTTTGCTTT+CGG + chr7_3:6777724-6777743 Msa1091450:three_prime_UTR 35.0%
ATGGACTTTAGTCCAACGAA+TGG - chr7_3:6776743-6776762 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr7_3:6776742-6776761 Msa1091450:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_3:6777142-6777161 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_3:6777184-6777203 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_3:6777183-6777202 Msa1091450:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_3:6777194-6777213 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_3:6777331-6777350 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr7_3:6777377-6777396 Msa1091450:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr7_3:6777422-6777441 Msa1091450:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_3:6777458-6777477 Msa1091450:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr7_3:6777487-6777506 Msa1091450:CDS 40.0%
AGCAAAGACCGAAAAAACAC+TGG - chr7_3:6777722-6777741 None:intergenic 40.0%
ATGGACTTTAGTCCAACGAA+TGG - chr7_3:6776743-6776762 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr7_3:6776742-6776761 Msa1091450:CDS 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_3:6777142-6777161 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_3:6777184-6777203 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_3:6777183-6777202 Msa1091450:intron 40.0%
TTCTTTCGCCAATTGTTCTC+TGG - chr7_3:6777194-6777213 None:intergenic 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_3:6777331-6777350 None:intergenic 40.0%
CTACTTGGTTACTTGCAGAA+AGG + chr7_3:6777377-6777396 Msa1091450:intron 40.0%
AGTTCACCAGGATACTATGA+CGG + chr7_3:6777422-6777441 Msa1091450:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_3:6777458-6777477 Msa1091450:CDS 40.0%
!! TGATGCTTCTCAAGTGTTGA+AGG + chr7_3:6777487-6777506 Msa1091450:CDS 40.0%
AGCAAAGACCGAAAAAACAC+TGG - chr7_3:6777722-6777741 None:intergenic 40.0%
AGCTGAAGAGGACATGATAG+AGG - chr7_3:6776672-6776691 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_3:6776684-6776703 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_3:6776697-6776716 Msa1091450:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr7_3:6776800-6776819 Msa1091450:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr7_3:6776807-6776826 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_3:6776820-6776839 Msa1091450:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_3:6777127-6777146 Msa1091450:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_3:6777187-6777206 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_3:6777225-6777244 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr7_3:6777421-6777440 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr7_3:6777431-6777450 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr7_3:6777432-6777451 Msa1091450:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr7_3:6777473-6777492 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_3:6777538-6777557 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_3:6777539-6777558 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_3:6777539-6777558 Msa1091450:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_3:6777546-6777565 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_3:6777553-6777572 None:intergenic 45.0%
AGCTGAAGAGGACATGATAG+AGG - chr7_3:6776672-6776691 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_3:6776684-6776703 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_3:6776697-6776716 Msa1091450:CDS 45.0%
ACTTCCATTGCAAGCAATGG+TGG + chr7_3:6776800-6776819 Msa1091450:CDS 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr7_3:6776807-6776826 None:intergenic 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_3:6776820-6776839 Msa1091450:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_3:6777127-6777146 Msa1091450:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_3:6777187-6777206 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_3:6777225-6777244 None:intergenic 45.0%
CATAGTATCCTGGTGAACTG+TGG - chr7_3:6777421-6777440 None:intergenic 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr7_3:6777431-6777450 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr7_3:6777432-6777451 Msa1091450:CDS 45.0%
GCATCAGTTGCTCCAAACAA+AGG - chr7_3:6777473-6777492 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_3:6777538-6777557 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_3:6777539-6777558 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_3:6777539-6777558 Msa1091450:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_3:6777546-6777565 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_3:6777553-6777572 None:intergenic 45.0%
CAGATTGTACCGAAGAGGCA+CGG - chr7_3:6776709-6776728 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_3:6776746-6776765 Msa1091450:CDS 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr7_3:6777252-6777271 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr7_3:6777311-6777330 Msa1091450:intron 50.0%
CTGGTGAACTGTGGTTCTCA+TGG - chr7_3:6777412-6777431 None:intergenic 50.0%
CATGAGAACCACAGTTCACC+AGG + chr7_3:6777410-6777429 Msa1091450:CDS 50.0%
ACGGACGTTACTGGACAATG+TGG + chr7_3:6777441-6777460 Msa1091450:CDS 50.0%
CAGATTGTACCGAAGAGGCA+CGG - chr7_3:6776709-6776728 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_3:6776746-6776765 Msa1091450:CDS 50.0%
AGACCTCGGTCTCAAATTCC+AGG - chr7_3:6777252-6777271 None:intergenic 50.0%
!! TCGTTGTTTTGTCGTGGCCA+AGG + chr7_3:6777311-6777330 Msa1091450:intron 50.0%
CTGGTGAACTGTGGTTCTCA+TGG - chr7_3:6777412-6777431 None:intergenic 50.0%
CATGAGAACCACAGTTCACC+AGG + chr7_3:6777410-6777429 Msa1091450:CDS 50.0%
ACGGACGTTACTGGACAATG+TGG + chr7_3:6777441-6777460 Msa1091450:CDS 50.0%
CGTGCCTCTTCGGTACAATC+TGG + chr7_3:6776707-6776726 Msa1091450:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr7_3:6776712-6776731 Msa1091450:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_3:6776762-6776781 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr7_3:6776763-6776782 Msa1091450:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr7_3:6777248-6777267 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr7_3:6777246-6777265 Msa1091450:intron 55.0%
CGTGCCTCTTCGGTACAATC+TGG + chr7_3:6776707-6776726 Msa1091450:CDS 55.0%
CTCTTCGGTACAATCTGGCG+CGG + chr7_3:6776712-6776731 Msa1091450:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_3:6776762-6776781 None:intergenic 55.0%
!! GGCTGGCTTCCCAGTTACAA+AGG + chr7_3:6776763-6776782 Msa1091450:CDS 55.0%
CTCGGTCTCAAATTCCAGGC+AGG - chr7_3:6777248-6777267 None:intergenic 55.0%
! CTGCCTGGAATTTGAGACCG+AGG + chr7_3:6777246-6777265 Msa1091450:intron 55.0%
CGCGCCAGATTGTACCGAAG+AGG - chr7_3:6776714-6776733 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr7_3:6776715-6776734 Msa1091450:CDS 60.0%
CGCGCCAGATTGTACCGAAG+AGG - chr7_3:6776714-6776733 None:intergenic 60.0%
TTCGGTACAATCTGGCGCGG+TGG + chr7_3:6776715-6776734 Msa1091450:CDS 60.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr7_3:6777231-6777250 Msa1091450:intron 65.0%
!! GAAGGGATGGGTTGCCTGCC+TGG + chr7_3:6777231-6777250 Msa1091450:intron 65.0%
GGCGCGGTGGCTCCATTCGT+TGG + chr7_3:6776728-6776747 Msa1091450:CDS 70.0%
GGCGCGGTGGCTCCATTCGT+TGG + chr7_3:6776728-6776747 Msa1091450:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 6776506 6777811 6776506 ID=Msa1091450;Name=Msa1091450
chr7_3 mRNA 6776506 6777811 6776506 ID=Msa1091450-mRNA-1;Parent=Msa1091450;Name=Msa1091450-mRNA-1;_AED=0.33;_eAED=0.33;_QI=135|0.66|1|1|0.33|0.25|4|163|136
chr7_3 exon 6776506 6776613 6776506 ID=Msa1091450-mRNA-1:exon:2155;Parent=Msa1091450-mRNA-1
chr7_3 exon 6776635 6776841 6776635 ID=Msa1091450-mRNA-1:exon:2156;Parent=Msa1091450-mRNA-1
chr7_3 exon 6777395 6777686 6777395 ID=Msa1091450-mRNA-1:exon:2157;Parent=Msa1091450-mRNA-1
chr7_3 exon 6777710 6777811 6777710 ID=Msa1091450-mRNA-1:exon:2158;Parent=Msa1091450-mRNA-1
chr7_3 five_prime_UTR 6776506 6776613 6776506 ID=Msa1091450-mRNA-1:five_prime_utr;Parent=Msa1091450-mRNA-1
chr7_3 five_prime_UTR 6776635 6776661 6776635 ID=Msa1091450-mRNA-1:five_prime_utr;Parent=Msa1091450-mRNA-1
chr7_3 CDS 6776662 6776841 6776662 ID=Msa1091450-mRNA-1:cds;Parent=Msa1091450-mRNA-1
chr7_3 CDS 6777395 6777625 6777395 ID=Msa1091450-mRNA-1:cds;Parent=Msa1091450-mRNA-1
chr7_3 three_prime_UTR 6777626 6777686 6777626 ID=Msa1091450-mRNA-1:three_prime_utr;Parent=Msa1091450-mRNA-1
chr7_3 three_prime_UTR 6777710 6777811 6777710 ID=Msa1091450-mRNA-1:three_prime_utr;Parent=Msa1091450-mRNA-1
Gene Sequence

>Msa1091450

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCTGGCGCGGTGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGGTCAACAAAGACATTACTTCCATTGCAAGCAATGGTGGAAGAGTAAACTGCATGCAGAAAGGATTTGTGTACCATGAGAACCACAGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACTGATGCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1091450

MASSIMSSSAVTTVNRASSVQSGAVAPFVGLKSMAGFPVTKVNKDITSIASNGGRVNCMQKGFVYHENHSSPGYYDGRYWTMWKLPLFGATDASQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*