AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0941420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941420 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 3.95e-108 305
Msa0941420 MtrunA17_Chr6g0457461 81.111 180 13 2 1 162 1 177 8.98e-104 294
Msa0941420 MtrunA17_Chr7g0215381 72.674 172 28 2 9 162 11 181 3.96e-89 258
Msa0941420 MtrunA17_Chr7g0215421 73.256 172 27 2 9 162 11 181 5.75e-89 257
Msa0941420 MtrunA17_Chr7g0215361 73.099 171 27 2 10 162 12 181 1.29e-88 256
Msa0941420 MtrunA17_Chr7g0215351 72.674 172 28 2 9 162 11 181 1.65e-88 256
Msa0941420 MtrunA17_Chr7g0215431 73.099 171 27 2 10 162 12 181 3.14e-88 255
Msa0941420 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.10e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0941420 AT5G38410.1 66.480 179 38 2 2 162 4 178 4.65e-84 245
Msa0941420 AT1G67090.1 65.922 179 39 2 2 162 4 178 6.68e-84 244
Msa0941420 AT5G38430.1 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0941420 AT5G38430.2 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0941420 AT5G38410.3 64.674 184 38 2 2 162 4 183 2.64e-83 243
Msa0941420 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.97e-82 241
Msa0941420 AT5G38410.2 66.860 172 42 2 2 162 4 171 7.56e-82 239
Msa0941420 AT1G67090.2 68.132 91 25 1 2 92 4 90 2.07e-38 128

Find 77 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGGTCTTCTTGGTAAC+TGG 0.200361 6_3:-15231813 None:intergenic
TATGATTAATTATAATTTAT+AGG 0.238559 6_3:+15231438 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.259020 6_3:-15231820 None:intergenic
GGGAAATTAAAGAGTAATAC+TGG 0.278829 6_3:-15233129 None:intergenic
AGAGTAATACTGGGTTCTTT+TGG 0.290685 6_3:-15233119 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_3:-15232948 None:intergenic
GTATTACTCTTTAATTTCCC+TGG 0.338836 6_3:+15233132 Msa0941420:three_prime_UTR
TCAAACATGTATTTCACCTT+TGG 0.342691 6_3:+15231597 Msa0941420:five_prime_UTR
GATACTATGACGGACGTTAC+TGG 0.345500 6_3:+15232736 Msa0941420:CDS
ATATGTATTCGGATTTCCTT+TGG 0.353083 6_3:+15233046 Msa0941420:three_prime_UTR
GATTCATTCATCAGAATCAT+TGG 0.353791 6_3:+15232843 Msa0941420:CDS
AAATATTGATGCAATCTATA+AGG 0.355302 6_3:-15231464 None:intergenic
ATGATTCTGATGAATGAATC+TGG 0.373664 6_3:-15232840 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_3:-15232117 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_3:+15232791 Msa0941420:CDS
CACCGTTAGCCGCGCCTCCT+TGG 0.395494 6_3:+15231737 Msa0941420:CDS
CAACATAGTTTATTATTGAT+AGG 0.416694 6_3:-15233088 None:intergenic
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_3:+15232762 Msa0941420:CDS
TTAGAGTGGACCCTTTAGAT+AGG 0.419452 6_3:+15231485 Msa0941420:five_prime_UTR
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_3:+15232158 Msa0941420:CDS
TTTCCTTTGGAAATTATGAA+TGG 0.422475 6_3:+15233059 Msa0941420:three_prime_UTR
CACAAAAGTACCTATCTAAA+GGG 0.424073 6_3:-15231495 None:intergenic
TATTACTCTTTAATTTCCCT+GGG 0.434541 6_3:+15233133 Msa0941420:three_prime_UTR
TCTATATTGAAGTTATTAGC+AGG 0.447443 6_3:+15233168 Msa0941420:three_prime_UTR
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_3:-15232160 None:intergenic
AGGATTTGAGACCGGTGAAT+GGG 0.457658 6_3:-15231779 None:intergenic
TCACAAAAGTACCTATCTAA+AGG 0.465075 6_3:-15231496 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.472739 6_3:+15231786 Msa0941420:CDS
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_3:-15232947 None:intergenic
TGTTGGTCTTCTTGGTAACT+GGG 0.488557 6_3:-15231812 None:intergenic
AACTTAGTTGCCCCATTCAC+CGG 0.491052 6_3:+15231768 Msa0941420:CDS
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_3:+15232714 Msa0941420:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_3:-15231844 None:intergenic
TGCCAAGGAGGCGCGGCTAA+CGG 0.502121 6_3:-15231739 None:intergenic
GAGGATTTGAGACCGGTGAA+TGG 0.506111 6_3:-15231780 None:intergenic
GGTGAATGGGGCAACTAAGT+TGG 0.512162 6_3:-15231766 None:intergenic
TTGTATAGTTTGAGTAGAGG+AGG 0.514696 6_3:-15231560 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_3:-15231847 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_3:-15232114 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_3:-15231829 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_3:+15232164 Msa0941420:CDS
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_3:-15232161 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_3:-15232732 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_3:-15232713 None:intergenic
CTATATTGAAGTTATTAGCA+GGG 0.563375 6_3:+15233169 Msa0941420:three_prime_UTR
AACTAAGTTGGCTTGTGCCA+AGG 0.563759 6_3:-15231754 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_3:+15231843 Msa0941420:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_3:-15232152 None:intergenic
GATTGCATCAATATTTAGAG+TGG 0.571992 6_3:+15231471 Msa0941420:five_prime_UTR
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_3:-15231787 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_3:-15232159 None:intergenic
CATCCATTCATAATTTCCAA+AGG 0.578098 6_3:-15233062 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_3:-15232774 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_3:-15232976 None:intergenic
TGGCTTGTGCCAAGGAGGCG+CGG 0.597288 6_3:-15231746 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_3:+15232102 Msa0941420:intron
AGAAGCAAAAGTTCAGCACT+TGG 0.603924 6_3:+15231655 Msa0941420:five_prime_UTR
ATGTTGTATAGTTTGAGTAG+AGG 0.605108 6_3:-15231563 None:intergenic
CAAGGAGGCGCGGCTAACGG+TGG 0.605314 6_3:-15231736 None:intergenic
CAAACTTGCTATATATCCAA+AGG 0.613113 6_3:-15231613 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_3:+15231840 Msa0941420:CDS
GCGGCTAACGGTGGTGACTG+CGG 0.617493 6_3:-15231727 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_3:-15232839 None:intergenic
GGATTTGAGACCGGTGAATG+GGG 0.628298 6_3:-15231778 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_3:+15231863 Msa0941420:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_3:-15232787 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_3:-15232725 None:intergenic
GGAAATTAAAGAGTAATACT+GGG 0.639491 6_3:-15233128 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_3:-15232156 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_3:-15232722 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_3:-15232944 None:intergenic
GGTAACTGGGAAACCAGCTG+AGG 0.671464 6_3:-15231799 None:intergenic
TAAGTTGGCTTGTGCCAAGG+AGG 0.671585 6_3:-15231751 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_3:+15232748 Msa0941420:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_3:+15232726 Msa0941420:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_3:+15232745 Msa0941420:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_3:+15232149 Msa0941420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_3:15231925-15231944 None:intergenic 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_3:15232080-15232099 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_3:15232081-15232100 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_3:15232437-15232456 None:intergenic 10.0%
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_3:15231925-15231944 None:intergenic 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_3:15232080-15232099 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_3:15232081-15232100 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_3:15232437-15232456 None:intergenic 10.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_3:15231924-15231943 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_3:15231926-15231945 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_3:15231972-15231991 None:intergenic 15.0%
!! AATGCAACAAAAAAAAAAAT+TGG + chr6_3:15232011-15232030 Msa0941420:intron 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_3:15232268-15232287 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_3:15232366-15232385 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_3:15232475-15232494 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_3:15232999-15233018 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_3:15233000-15233019 None:intergenic 15.0%
!!! ATTTTTGGTTAATATGTATT+CGG + chr6_3:15233035-15233054 Msa0941420:three_prime_UTR 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_3:15231924-15231943 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_3:15231926-15231945 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_3:15231972-15231991 None:intergenic 15.0%
!! AATGCAACAAAAAAAAAAAT+TGG + chr6_3:15232011-15232030 Msa0941420:intron 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_3:15232268-15232287 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_3:15232366-15232385 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_3:15232475-15232494 None:intergenic 15.0%
!! TCAAAAAACATAAAACAAAT+GGG - chr6_3:15232999-15233018 None:intergenic 15.0%
!! ATCAAAAAACATAAAACAAA+TGG - chr6_3:15233000-15233019 None:intergenic 15.0%
!!! ATTTTTGGTTAATATGTATT+CGG + chr6_3:15233035-15233054 Msa0941420:three_prime_UTR 15.0%
!! AAATATTGATGCAATCTATA+AGG - chr6_3:15231467-15231486 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_3:15231954-15231973 Msa0941420:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_3:15232057-15232076 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_3:15232091-15232110 Msa0941420:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_3:15232279-15232298 None:intergenic 20.0%
!! TTCATATGATAAAATCTGAT+TGG - chr6_3:15232342-15232361 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_3:15232477-15232496 Msa0941420:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_3:15232681-15232700 Msa0941420:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_3:15232918-15232937 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_3:15232950-15232969 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_3:15232951-15232970 None:intergenic 20.0%
!!! ATTTCATCATCTTGTATTTT+TGG + chr6_3:15233020-15233039 Msa0941420:three_prime_UTR 20.0%
!! CAACATAGTTTATTATTGAT+AGG - chr6_3:15233091-15233110 None:intergenic 20.0%
!! AAATATTGATGCAATCTATA+AGG - chr6_3:15231467-15231486 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_3:15231954-15231973 Msa0941420:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_3:15232057-15232076 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_3:15232091-15232110 Msa0941420:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_3:15232279-15232298 None:intergenic 20.0%
!! TTCATATGATAAAATCTGAT+TGG - chr6_3:15232342-15232361 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+CGG + chr6_3:15232477-15232496 Msa0941420:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_3:15232681-15232700 Msa0941420:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_3:15232918-15232937 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_3:15232950-15232969 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_3:15232951-15232970 None:intergenic 20.0%
!!! ATTTCATCATCTTGTATTTT+TGG + chr6_3:15233020-15233039 Msa0941420:three_prime_UTR 20.0%
!! CAACATAGTTTATTATTGAT+AGG - chr6_3:15233091-15233110 None:intergenic 20.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_3:15231896-15231915 None:intergenic 25.0%
!! TTTCCTTTGGAAATTATGAA+TGG + chr6_3:15233059-15233078 Msa0941420:three_prime_UTR 25.0%
! GGAAATTAAAGAGTAATACT+GGG - chr6_3:15233131-15233150 None:intergenic 25.0%
!! TATTACTCTTTAATTTCCCT+GGG + chr6_3:15233133-15233152 Msa0941420:three_prime_UTR 25.0%
! TAGAAAAAAATTTCAACCCA+GGG - chr6_3:15233152-15233171 None:intergenic 25.0%
! ATAGAAAAAAATTTCAACCC+AGG - chr6_3:15233153-15233172 None:intergenic 25.0%
! TCTATATTGAAGTTATTAGC+AGG + chr6_3:15233168-15233187 Msa0941420:three_prime_UTR 25.0%
! CTATATTGAAGTTATTAGCA+GGG + chr6_3:15233169-15233188 Msa0941420:three_prime_UTR 25.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_3:15231896-15231915 None:intergenic 25.0%
!! TTTCCTTTGGAAATTATGAA+TGG + chr6_3:15233059-15233078 Msa0941420:three_prime_UTR 25.0%
! GGAAATTAAAGAGTAATACT+GGG - chr6_3:15233131-15233150 None:intergenic 25.0%
!! TATTACTCTTTAATTTCCCT+GGG + chr6_3:15233133-15233152 Msa0941420:three_prime_UTR 25.0%
! TAGAAAAAAATTTCAACCCA+GGG - chr6_3:15233152-15233171 None:intergenic 25.0%
! ATAGAAAAAAATTTCAACCC+AGG - chr6_3:15233153-15233172 None:intergenic 25.0%
! TCTATATTGAAGTTATTAGC+AGG + chr6_3:15233168-15233187 Msa0941420:three_prime_UTR 25.0%
! CTATATTGAAGTTATTAGCA+GGG + chr6_3:15233169-15233188 Msa0941420:three_prime_UTR 25.0%
GATTGCATCAATATTTAGAG+TGG + chr6_3:15231471-15231490 Msa0941420:five_prime_UTR 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_3:15231498-15231517 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_3:15231499-15231518 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_3:15231566-15231585 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_3:15231597-15231616 Msa0941420:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_3:15231616-15231635 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_3:15232304-15232323 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_3:15232484-15232503 Msa0941420:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_3:15232842-15232861 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_3:15232843-15232862 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_3:15232843-15232862 Msa0941420:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_3:15232947-15232966 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_3:15232979-15232998 None:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG + chr6_3:15233046-15233065 Msa0941420:three_prime_UTR 30.0%
CATCCATTCATAATTTCCAA+AGG - chr6_3:15233065-15233084 None:intergenic 30.0%
GGGAAATTAAAGAGTAATAC+TGG - chr6_3:15233132-15233151 None:intergenic 30.0%
! GTATTACTCTTTAATTTCCC+TGG + chr6_3:15233132-15233151 Msa0941420:three_prime_UTR 30.0%
TCTGATACTGTGAAAAATTG+CGG + chr6_3:15233208-15233227 Msa0941420:three_prime_UTR 30.0%
GATTGCATCAATATTTAGAG+TGG + chr6_3:15231471-15231490 Msa0941420:five_prime_UTR 30.0%
!! CACAAAAGTACCTATCTAAA+GGG - chr6_3:15231498-15231517 None:intergenic 30.0%
!! TCACAAAAGTACCTATCTAA+AGG - chr6_3:15231499-15231518 None:intergenic 30.0%
ATGTTGTATAGTTTGAGTAG+AGG - chr6_3:15231566-15231585 None:intergenic 30.0%
TCAAACATGTATTTCACCTT+TGG + chr6_3:15231597-15231616 Msa0941420:five_prime_UTR 30.0%
!! CAAACTTGCTATATATCCAA+AGG - chr6_3:15231616-15231635 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_3:15232304-15232323 None:intergenic 30.0%
TTATAGTGTTTAGCGGAATT+TGG + chr6_3:15232484-15232503 Msa0941420:intron 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_3:15232842-15232861 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_3:15232843-15232862 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_3:15232843-15232862 Msa0941420:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_3:15232947-15232966 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_3:15232979-15232998 None:intergenic 30.0%
ATATGTATTCGGATTTCCTT+TGG + chr6_3:15233046-15233065 Msa0941420:three_prime_UTR 30.0%
CATCCATTCATAATTTCCAA+AGG - chr6_3:15233065-15233084 None:intergenic 30.0%
GGGAAATTAAAGAGTAATAC+TGG - chr6_3:15233132-15233151 None:intergenic 30.0%
! GTATTACTCTTTAATTTCCC+TGG + chr6_3:15233132-15233151 Msa0941420:three_prime_UTR 30.0%
TCTGATACTGTGAAAAATTG+CGG + chr6_3:15233208-15233227 Msa0941420:three_prime_UTR 30.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_3:15231502-15231521 Msa0941420:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_3:15231563-15231582 None:intergenic 35.0%
GCTGAGTAATTGAGCAAAAA+TGG + chr6_3:15231689-15231708 Msa0941420:exon 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_3:15231823-15231842 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_3:15231832-15231851 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_3:15231902-15231921 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_3:15232184-15232203 Msa0941420:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_3:15232188-15232207 Msa0941420:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_3:15232189-15232208 Msa0941420:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_3:15232222-15232241 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_3:15232221-15232240 Msa0941420:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_3:15232550-15232569 Msa0941420:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_3:15232791-15232810 Msa0941420:CDS 35.0%
! AGAGTAATACTGGGTTCTTT+TGG - chr6_3:15233122-15233141 None:intergenic 35.0%
TGAAAAATTGCGGTCAGATT+CGG + chr6_3:15233218-15233237 Msa0941420:three_prime_UTR 35.0%
! GATAGGTACTTTTGTGAACA+AGG + chr6_3:15231502-15231521 Msa0941420:five_prime_UTR 35.0%
TTGTATAGTTTGAGTAGAGG+AGG - chr6_3:15231563-15231582 None:intergenic 35.0%
GCTGAGTAATTGAGCAAAAA+TGG + chr6_3:15231689-15231708 Msa0941420:exon 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_3:15231823-15231842 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_3:15231832-15231851 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_3:15231902-15231921 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_3:15232184-15232203 Msa0941420:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_3:15232188-15232207 Msa0941420:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_3:15232189-15232208 Msa0941420:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_3:15232222-15232241 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_3:15232221-15232240 Msa0941420:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_3:15232550-15232569 Msa0941420:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_3:15232791-15232810 Msa0941420:CDS 35.0%
! AGAGTAATACTGGGTTCTTT+TGG - chr6_3:15233122-15233141 None:intergenic 35.0%
TGAAAAATTGCGGTCAGATT+CGG + chr6_3:15233218-15233237 Msa0941420:three_prime_UTR 35.0%
TTAGAGTGGACCCTTTAGAT+AGG + chr6_3:15231485-15231504 Msa0941420:five_prime_UTR 40.0%
AGAAGCAAAAGTTCAGCACT+TGG + chr6_3:15231655-15231674 Msa0941420:five_prime_UTR 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_3:15231815-15231834 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_3:15231816-15231835 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_3:15231840-15231859 Msa0941420:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_3:15231909-15231928 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_3:15232120-15232139 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_3:15232193-15232212 Msa0941420:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_3:15232499-15232518 Msa0941420:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_3:15232621-15232640 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_3:15232646-15232665 Msa0941420:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_3:15232647-15232666 Msa0941420:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_3:15232651-15232670 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_3:15232790-15232809 None:intergenic 40.0%
TTAGAGTGGACCCTTTAGAT+AGG + chr6_3:15231485-15231504 Msa0941420:five_prime_UTR 40.0%
AGAAGCAAAAGTTCAGCACT+TGG + chr6_3:15231655-15231674 Msa0941420:five_prime_UTR 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_3:15231815-15231834 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_3:15231816-15231835 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_3:15231840-15231859 Msa0941420:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_3:15231909-15231928 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_3:15232120-15232139 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_3:15232193-15232212 Msa0941420:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_3:15232499-15232518 Msa0941420:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_3:15232621-15232640 None:intergenic 40.0%
TTCCGAGTGATGAATTTCGT+AGG + chr6_3:15232646-15232665 Msa0941420:intron 40.0%
TCCGAGTGATGAATTTCGTA+GGG + chr6_3:15232647-15232666 Msa0941420:intron 40.0%
ACCCTACGAAATTCATCACT+CGG - chr6_3:15232651-15232670 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_3:15232790-15232809 None:intergenic 40.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_3:15231757-15231776 None:intergenic 45.0%
AACTTAGTTGCCCCATTCAC+CGG + chr6_3:15231768-15231787 Msa0941420:CDS 45.0%
! AGGATTTGAGACCGGTGAAT+GGG - chr6_3:15231782-15231801 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_3:15231850-15231869 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_3:15231863-15231882 Msa0941420:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_3:15232117-15232136 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_3:15232163-15232182 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_3:15232164-15232183 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_3:15232164-15232183 Msa0941420:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_3:15232200-15232219 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_3:15232206-15232225 Msa0941420:intron 45.0%
CGGTAATCCTCTCATTCACT+CGG + chr6_3:15232519-15232538 Msa0941420:intron 45.0%
AATCCTCTCATTCACTCGGT+CGG + chr6_3:15232523-15232542 Msa0941420:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_3:15232578-15232597 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_3:15232597-15232616 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_3:15232638-15232657 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_3:15232728-15232747 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_3:15232726-15232745 Msa0941420:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_3:15232735-15232754 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_3:15232736-15232755 Msa0941420:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_3:15232762-15232781 Msa0941420:CDS 45.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_3:15231757-15231776 None:intergenic 45.0%
AACTTAGTTGCCCCATTCAC+CGG + chr6_3:15231768-15231787 Msa0941420:CDS 45.0%
! AGGATTTGAGACCGGTGAAT+GGG - chr6_3:15231782-15231801 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_3:15231850-15231869 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_3:15231863-15231882 Msa0941420:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_3:15232117-15232136 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_3:15232163-15232182 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_3:15232164-15232183 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_3:15232164-15232183 Msa0941420:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_3:15232200-15232219 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_3:15232206-15232225 Msa0941420:intron 45.0%
CGGTAATCCTCTCATTCACT+CGG + chr6_3:15232519-15232538 Msa0941420:intron 45.0%
AATCCTCTCATTCACTCGGT+CGG + chr6_3:15232523-15232542 Msa0941420:intron 45.0%
TCGGCACATCATGTAGTTGT+TGG - chr6_3:15232578-15232597 None:intergenic 45.0%
ATTCTCCGCATTCACAGAGT+CGG - chr6_3:15232597-15232616 None:intergenic 45.0%
CATCACTCGGAACACGAATT+CGG - chr6_3:15232638-15232657 None:intergenic 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_3:15232728-15232747 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_3:15232726-15232745 Msa0941420:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_3:15232735-15232754 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_3:15232736-15232755 Msa0941420:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_3:15232762-15232781 Msa0941420:CDS 45.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_3:15232086-15232105 Msa0941420:intron 5.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_3:15232086-15232105 Msa0941420:intron 5.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_3:15231754-15231773 None:intergenic 50.0%
GGTGAATGGGGCAACTAAGT+TGG - chr6_3:15231769-15231788 None:intergenic 50.0%
! GGATTTGAGACCGGTGAATG+GGG - chr6_3:15231781-15231800 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+TGG - chr6_3:15231783-15231802 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_3:15231790-15231809 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_3:15231843-15231862 Msa0941420:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_3:15231847-15231866 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_3:15232102-15232121 Msa0941420:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_3:15232159-15232178 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_3:15232158-15232177 Msa0941420:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_3:15232162-15232181 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_3:15232514-15232533 None:intergenic 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_3:15232589-15232608 Msa0941420:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_3:15232725-15232744 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_3:15232745-15232764 Msa0941420:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_3:15232748-15232767 Msa0941420:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_3:15232777-15232796 None:intergenic 50.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_3:15231754-15231773 None:intergenic 50.0%
GGTGAATGGGGCAACTAAGT+TGG - chr6_3:15231769-15231788 None:intergenic 50.0%
! GGATTTGAGACCGGTGAATG+GGG - chr6_3:15231781-15231800 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+TGG - chr6_3:15231783-15231802 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_3:15231790-15231809 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_3:15231843-15231862 Msa0941420:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_3:15231847-15231866 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_3:15232102-15232121 Msa0941420:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_3:15232159-15232178 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_3:15232158-15232177 Msa0941420:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_3:15232162-15232181 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_3:15232514-15232533 None:intergenic 50.0%
!! ATGTGCCGACTCTGTGAATG+CGG + chr6_3:15232589-15232608 Msa0941420:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_3:15232725-15232744 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_3:15232745-15232764 Msa0941420:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_3:15232748-15232767 Msa0941420:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_3:15232777-15232796 None:intergenic 50.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_3:15231786-15231805 Msa0941420:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_3:15231802-15231821 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_3:15232149-15232168 Msa0941420:CDS 55.0%
! GTACCGACCGAGTGAATGAG+AGG - chr6_3:15232529-15232548 None:intergenic 55.0%
CATTCACTCGGTCGGTACAC+AGG + chr6_3:15232531-15232550 Msa0941420:intron 55.0%
TCGGTCGGTACACAGGTTGT+TGG + chr6_3:15232538-15232557 Msa0941420:intron 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_3:15232716-15232735 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_3:15231786-15231805 Msa0941420:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_3:15231802-15231821 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_3:15232149-15232168 Msa0941420:CDS 55.0%
! GTACCGACCGAGTGAATGAG+AGG - chr6_3:15232529-15232548 None:intergenic 55.0%
CATTCACTCGGTCGGTACAC+AGG + chr6_3:15232531-15232550 Msa0941420:intron 55.0%
TCGGTCGGTACACAGGTTGT+TGG + chr6_3:15232538-15232557 Msa0941420:intron 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_3:15232716-15232735 None:intergenic 55.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_3:15232155-15232174 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_3:15232714-15232733 Msa0941420:CDS 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_3:15232155-15232174 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_3:15232714-15232733 Msa0941420:CDS 60.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_3:15231730-15231749 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_3:15231742-15231761 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_3:15231749-15231768 None:intergenic 65.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_3:15231730-15231749 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_3:15231742-15231761 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_3:15231749-15231768 None:intergenic 65.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_3:15231739-15231758 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_3:15231737-15231756 Msa0941420:CDS 70.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_3:15231739-15231758 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_3:15231737-15231756 Msa0941420:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 15231449 15233286 15231449 ID=Msa0941420;Name=Msa0941420
chr6_3 mRNA 15231449 15233286 15231449 ID=Msa0941420-mRNA-1;Parent=Msa0941420;Name=Msa0941420-mRNA-1;_AED=0.23;_eAED=0.23;_QI=259|0.5|0.66|1|1|1|3|357|162
chr6_3 exon 15231449 15231884 15231449 ID=Msa0941420-mRNA-1:exon:4637;Parent=Msa0941420-mRNA-1
chr6_3 exon 15232108 15232188 15232108 ID=Msa0941420-mRNA-1:exon:4638;Parent=Msa0941420-mRNA-1
chr6_3 exon 15232699 15233286 15232699 ID=Msa0941420-mRNA-1:exon:4639;Parent=Msa0941420-mRNA-1
chr6_3 five_prime_UTR 15231449 15231707 15231449 ID=Msa0941420-mRNA-1:five_prime_utr;Parent=Msa0941420-mRNA-1
chr6_3 CDS 15231708 15231884 15231708 ID=Msa0941420-mRNA-1:cds;Parent=Msa0941420-mRNA-1
chr6_3 CDS 15232108 15232188 15232108 ID=Msa0941420-mRNA-1:cds;Parent=Msa0941420-mRNA-1
chr6_3 CDS 15232699 15232929 15232699 ID=Msa0941420-mRNA-1:cds;Parent=Msa0941420-mRNA-1
chr6_3 three_prime_UTR 15232930 15233286 15232930 ID=Msa0941420-mRNA-1:three_prime_utr;Parent=Msa0941420-mRNA-1
Gene Sequence

>Msa0941420

ATGGCTTTGATTTCTTCTGCCGCAGTCACCACCGTTAGCCGCGCCTCCTTGGCACAAGCCAACTTAGTTGCCCCATTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTTACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0941420

MALISSAAVTTVSRASLAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*